The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	27282	70036	4105343	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	77634	136108	4105343	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	174298	303018	4105343	protease,transposase,tRNA	Klosneuvirus(11.76%)	110	NA	NA
WP_010929591.1|174298_175249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176364_176892_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176983_177799_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177859_178594_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181333_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184323_187998_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188629_189052_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189079_189499_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189527_189974_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190752_193023_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193098_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194402_195353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195455_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197375_198476_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198557_198932_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198991_201856_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205632_206583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206739_207063_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207167_208208_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208213_208993_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209360_209636_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210336_211023_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211221_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212054_212780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214272_215205_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219051_221895_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224450_225401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|225619_226315_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|226331_227744_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|227856_229287_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|229328_231242_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|231560_232127_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|232217_233219_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|233333_234284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234370_235321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235317_236268_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236366_237164_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238113_238524_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239545_240289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240332_241376_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069018.1|241546_243649_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245059_246016_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246034_246526_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246522_247878_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247878_248577_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248573_249275_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249527_250577_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250682_251624_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251620_253510_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253596_254235_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254377_255763_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255693_256230_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256381_257773_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257789_258770_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258905_259889_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259953_260853_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260959_262714_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262721_263846_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263859_264840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265570_266521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267080_267626_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267751_269329_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269344_270499_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270512_270638_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270634_272386_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272382_274062_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274124_274673_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275815_276094_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277137_278088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278074_278290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278365_278527_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279193_279643_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279652_280264_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280422_281271_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281296_282679_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282743_283385_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283524_283983_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284007_284784_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284837_285974_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285970_286921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807705.1|287019_287646_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_003807706.1|287668_288595_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003819100.1|288603_290190_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929723.1|290186_291191_-	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003807710.1|291390_292251_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|292282_293284_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003819104.1|293354_294164_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003819105.1|294241_296101_+	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_010929725.1|296229_297432_-	MFS transporter	NA	NA	NA	NA	NA
WP_004566082.1|297545_298427_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004566083.1|299929_300490_-	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_005013747.1|300549_301500_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|301691_301979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|302067_303018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	390854	448363	4105343	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390854_391805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391941_392859_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392855_393104_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393100_394306_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394378_395374_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395396_396617_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396613_397258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398988_399798_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400102_401056_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401154_402138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402064_402766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402814_403585_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403581_404760_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404927_406634_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406630_407527_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407567_409157_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409206_410199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410267_410867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411327_412308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412383_413334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413422_414337_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414333_414993_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415082_416006_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416011_416467_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416463_417567_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417522_417795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417754_419374_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419370_420429_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420558_421053_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421145_422123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422318_423524_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423520_425032_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425047_426361_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426551_426731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427140_427875_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430319_431270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431401_431800_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432210_432681_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432769_433114_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433213_434614_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436402_436921_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437031_437787_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437982_439215_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439207_439993_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440059_441031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441041_442019_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442144_443317_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443343_444372_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444437_445631_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447412_448363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	589368	650558	4105343	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589368_590319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590794_591685_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591681_592503_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592701_593193_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593211_594285_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594331_595435_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595510_596131_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596151_596661_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596715_596967_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597030_598164_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598171_598558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598554_601074_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601502_601841_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601837_602344_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602405_603206_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603316_604258_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604351_605887_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607566_609417_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609420_610254_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610253_611195_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611446_612418_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612559_614848_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615154_616063_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616117_617083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617157_618819_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618890_619601_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619749_620700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621398_621782_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621839_622442_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622459_622861_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622976_623888_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623884_624466_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625260_625995_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626035_627085_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627232_627811_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628197_629175_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629268_633663_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633863_634712_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634870_635683_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635738_636689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636787_637588_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637649_638033_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638044_639397_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639684_640014_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640016_640766_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640948_641869_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641915_642128_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642150_642573_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642589_643690_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643786_645304_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645379_646219_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646240_647113_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647203_648298_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648591_649542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649616_650558_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	655882	702073	4105343	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655882_656908_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656948_657188_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657257_658847_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658846_659395_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659475_660048_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660066_660978_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661051_662020_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662142_663216_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663220_665041_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665117_666068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666156_666492_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666625_667276_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667297_668716_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668785_669541_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669509_670268_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670278_671160_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671176_671884_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671886_672645_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672854_674597_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674589_675114_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675153_675948_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676115_677189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677287_678238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678489_678696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678767_679379_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679933_680185_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680177_680867_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681123_682074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682713_683199_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683185_684463_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684465_685884_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685912_686968_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686973_687216_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687338_687941_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688369_689320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689994_690246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690308_690791_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690804_690993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690992_691388_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691384_691783_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691779_692202_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692209_692710_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692964_693483_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693492_693822_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693839_694130_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694155_696768_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696777_697137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697204_697738_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697734_698124_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698116_702073_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	708239	762169	4105343	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708239_709970_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710022_710451_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710453_711134_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711133_711592_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711628_712603_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712619_713936_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713967_714465_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714551_715241_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715240_716290_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716286_717081_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717249_717600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717575_718133_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719262_720213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722350_723580_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723582_725025_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725129_726275_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726306_727104_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727128_728688_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728684_731057_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731166_732270_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732269_732962_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733105_733807_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733791_734169_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734900_735851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736010_736883_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737223_737442_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737481_738861_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738902_740300_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740339_741992_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741995_742880_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742879_743821_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743899_745519_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745685_746501_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746568_747138_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747138_748089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748743_749841_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749874_751140_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751297_752248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752491_753082_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753097_755542_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755661_756633_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756764_757289_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757248_758199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758420_760616_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760688_761096_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761218_762169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	884758	952734	4105343	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884758_885775_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885971_886955_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888553_889942_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889972_890962_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891072_892305_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892586_893387_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893409_895641_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896428_896875_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896896_897643_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897786_898764_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899397_900009_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900002_901220_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901360_902311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902307_903027_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903147_905307_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905397_905667_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905755_905962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905960_906488_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906506_907286_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907453_908470_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908542_909034_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909044_910760_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911923_912874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912870_914703_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915101_915761_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916288_916969_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917250_917967_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917981_919283_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921427_924316_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924539_925892_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925920_926442_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926438_927893_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927927_928176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928281_929157_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929182_930238_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930250_931042_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931074_932445_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933621_934572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934624_934846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935005_935218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935337_936456_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936552_936768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936961_937213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937325_938276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938272_938656_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938710_940525_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940674_941502_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941547_942528_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942524_942737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942733_943915_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944078_944813_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944814_947427_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947562_949476_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950091_950502_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950599_951685_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951783_952734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	996263	1068780	4105343	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996263_997214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997318_998368_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998505_999522_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001030_1001603_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001662_1002394_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002445_1003363_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004170_1007350_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007346_1008729_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008798_1009050_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009195_1009810_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009996_1012057_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012186_1013038_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013034_1013661_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013657_1015412_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015704_1018410_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018422_1020084_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020096_1021887_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022108_1023284_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023326_1024277_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024375_1025116_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025310_1027347_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027364_1028375_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028492_1029686_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029715_1030489_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030485_1031676_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031701_1032640_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032636_1034985_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035139_1035781_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037110_1037263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037294_1037843_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037861_1038347_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038524_1039463_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039465_1039783_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039828_1040773_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042453_1043104_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043157_1043493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043489_1044350_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044366_1044648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044721_1044985_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045228_1046179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046477_1047215_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047650_1047974_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048008_1048569_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048689_1049565_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049577_1050525_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050626_1050920_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050946_1053004_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053018_1053519_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053592_1055299_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056162_1057215_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057267_1057657_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057665_1058298_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058397_1059414_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060244_1061252_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061248_1062892_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062888_1063776_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063916_1064390_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064379_1065402_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065398_1066826_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067763_1068780_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1072533	1134609	4105343	transposase,holin,tRNA	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1072533_1073670_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073666_1074740_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074897_1076334_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076424_1077066_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077401_1078418_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080460_1081411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082613_1084035_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084298_1085015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085099_1085417_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085457_1085871_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085872_1086232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086274_1087819_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087902_1088733_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088767_1089922_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089964_1090837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090953_1093242_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094448_1094913_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094939_1095890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095907_1096045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096257_1097034_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097078_1097936_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097957_1098974_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099108_1100149_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100343_1102425_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102660_1104154_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104384_1105179_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105399_1106758_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106754_1107597_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107615_1109502_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109443_1109695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109739_1110372_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110390_1110993_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111144_1112095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112675_1113383_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113741_1114728_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114867_1115881_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115877_1116828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116940_1117399_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117435_1118749_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118766_1119138_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119134_1120598_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120738_1121467_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121448_1124298_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124510_1125461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125628_1126453_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126452_1127331_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128235_1129351_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129379_1130174_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130170_1132036_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132114_1132747_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132743_1133046_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133088_1134609_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1152179	1218699	4105343	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152179_1153976_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153975_1154944_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155013_1155859_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155926_1156481_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156527_1157478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157576_1158209_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158373_1160656_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160810_1163507_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163632_1164121_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166531_1169402_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169447_1170662_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170891_1172319_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172416_1173508_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173520_1174279_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174366_1175269_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175265_1176216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176345_1177329_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177383_1178106_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179584_1180940_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181020_1183396_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183560_1185636_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185697_1186492_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186599_1187562_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187549_1188305_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188412_1190050_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190117_1190855_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190957_1191533_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191705_1192242_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192274_1192589_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192604_1193450_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193488_1194868_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194945_1195827_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195926_1196877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196873_1197284_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197391_1198246_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198238_1199201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199246_1200371_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200476_1201355_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201479_1202259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202412_1203834_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204268_1205966_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206192_1207134_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207460_1208207_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208214_1209141_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209262_1210180_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210219_1211173_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211197_1211776_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213449_1214058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214135_1214489_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214572_1215562_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215764_1216715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216801_1217752_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217748_1218699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1269626	1326836	4105343	transposase	Klosneuvirus(16.67%)	50	NA	NA
WP_010931070.1|1269626_1270577_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274323_1274935_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275157_1276618_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276714_1278307_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278660_1278918_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278919_1280260_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280355_1281045_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281057_1282488_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284212_1285034_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285044_1286616_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286644_1287622_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287648_1288452_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288448_1289243_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289250_1290486_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290499_1290913_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_161633141.1|1291397_1291541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1291662_1292613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293234_1294962_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295073_1296432_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296724_1297675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297715_1298786_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298808_1299687_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299858_1300830_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300992_1301835_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301996_1302677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302670_1303840_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303836_1304868_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304935_1306153_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306187_1307720_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307800_1308424_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308454_1309066_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309101_1309572_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1309761_1309995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1310002_1311007_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311043_1312558_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312561_1313521_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313549_1314353_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314354_1315989_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316072_1317134_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317332_1317602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317605_1318130_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318545_1319496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319492_1320527_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320635_1321274_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321568_1321796_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321918_1322632_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322876_1323827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323966_1324212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324326_1325775_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325885_1326836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1417069	1469222	4105343	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1417069_1418020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418186_1418540_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418552_1418915_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418956_1419382_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419584_1420841_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421039_1422020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422169_1423411_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423509_1424460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424468_1425164_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427985_1428585_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428595_1430761_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430784_1432569_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432568_1432658_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433352_1433625_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433624_1435691_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435687_1436638_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436736_1437687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437802_1438135_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438131_1438818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438804_1439764_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439796_1442166_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442165_1442798_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442899_1444240_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444286_1445642_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445932_1446169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446356_1446674_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446946_1447462_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447732_1448488_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448826_1449033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449040_1449700_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449994_1452199_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452309_1453533_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453655_1454630_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454697_1455891_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455905_1456706_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456702_1458559_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458555_1459161_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459179_1460565_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461290_1462517_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462605_1463388_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463486_1464437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464463_1465237_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465248_1466490_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468271_1469222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1513147	1581233	4105343	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1513147_1513636_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513753_1514332_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514437_1514806_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514904_1515855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515861_1516974_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517660_1518863_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519066_1521727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521739_1525144_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525811_1528037_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528083_1528410_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528460_1529069_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529167_1530118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530187_1530952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1530948_1531485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531651_1532503_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532562_1533189_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533185_1534136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534234_1535347_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535336_1536338_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536443_1537955_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537951_1539256_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539367_1539928_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540195_1540750_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541205_1541421_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541675_1544273_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544269_1545457_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1546115_1546730_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1546818_1547940_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547957_1548863_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549755_1550706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550887_1551640_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551708_1552368_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552364_1553093_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553105_1555385_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555409_1555613_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555654_1556287_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556422_1557340_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557336_1558050_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558287_1559058_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559062_1559662_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559906_1561397_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561455_1561740_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1562305_1563232_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563368_1564109_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564275_1565652_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565833_1566739_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568390_1570193_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1570310_1570961_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571059_1572010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572031_1573252_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573437_1574850_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574913_1575981_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575980_1577468_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577477_1578422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578581_1579280_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579357_1580263_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580282_1581233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1617182	1672773	4105343	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617182_1618133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618191_1618965_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618957_1620514_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620510_1621461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622787_1623390_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623629_1624331_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624324_1625107_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625291_1626242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626340_1627078_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627267_1628026_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628072_1629062_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629239_1630208_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631747_1632716_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632724_1633666_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634139_1635150_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635140_1636655_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636651_1637998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1638000_1639035_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639084_1640710_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641262_1642213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642317_1643265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643318_1645133_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645125_1645800_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645929_1649004_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649017_1649317_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649631_1650255_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1650498_1651368_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651345_1652290_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652375_1653302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653414_1654194_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654184_1655381_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655411_1656362_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656583_1657273_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657337_1658093_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658144_1659137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659146_1660100_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660215_1661178_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662579_1663008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663004_1663955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1664248_1664971_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665409_1666597_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1666600_1666951_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668700_1669672_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669685_1670399_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670403_1671321_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671427_1671724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671822_1672773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1830540	1889810	4105343	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830540_1831491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831615_1832425_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1832625_1833576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834849_1836067_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837123_1838026_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838102_1838975_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839105_1839474_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839531_1840578_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840773_1842030_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842034_1843372_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843521_1844478_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844580_1845513_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845628_1845949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845941_1846301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846348_1847923_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847975_1848920_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848937_1849768_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849760_1851395_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851391_1852747_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853653_1855231_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855234_1856509_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856606_1856981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858696_1859830_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859867_1860473_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860469_1861288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861359_1863984_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863970_1864225_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864291_1864873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865176_1865437_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865602_1866226_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866225_1866999_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1866995_1868204_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868229_1868703_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868776_1869727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869825_1870776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870874_1872224_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872989_1873745_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873837_1876720_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877042_1877468_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877495_1878644_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878640_1879147_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1879162_1880449_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1880498_1881794_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881795_1882434_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1882439_1883597_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883623_1884979_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884982_1886053_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886191_1886428_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886515_1887622_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887587_1888892_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888910_1889810_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1900050	1944373	4105343	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1900050_1901001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901099_1902050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902249_1903335_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903350_1904112_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1904108_1905032_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1905130_1905655_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905663_1906407_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906502_1906742_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906755_1906908_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1906993_1908484_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908575_1909514_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909510_1909687_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909689_1910352_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911973_1912117_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912113_1913088_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1913254_1914205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914201_1915476_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915579_1916773_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916769_1917423_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917419_1918856_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918843_1919203_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920017_1920158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920175_1921126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922171_1924037_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924294_1925815_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925902_1926553_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927501_1928797_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928818_1929703_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929801_1930677_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930666_1931023_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931153_1932128_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932257_1932437_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932534_1933059_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933069_1933906_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934018_1934390_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934386_1934938_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934953_1936645_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936693_1937374_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937621_1938086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938255_1939185_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939197_1939845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939918_1941736_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941819_1942770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943422_1944373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	1974146	2038515	4105343	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974146_1975097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975318_1976269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976367_1977333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977470_1978370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980964_1982452_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982462_1983659_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983731_1985051_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985047_1985923_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985953_1987102_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987119_1987434_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987455_1988178_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988177_1988996_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989000_1989528_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989533_1990790_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991148_1992288_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992365_1993238_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994108_1995059_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995018_1995654_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996013_1997336_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997654_1998476_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999900_2000473_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000512_2002342_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002304_2003363_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003400_2003862_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003946_2004693_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006183_2009414_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009480_2010812_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011064_2011439_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011541_2012720_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012730_2013321_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013431_2014238_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014263_2015058_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016058_2017033_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017191_2017704_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017860_2018832_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020576_2021383_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021379_2022681_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022631_2023396_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023509_2024280_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024364_2025552_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025624_2025999_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026099_2027362_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027358_2028216_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028388_2029390_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029841_2030792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032355_2033507_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033875_2034112_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034175_2034343_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034456_2036352_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036515_2037466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037564_2038515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	2170053	2219706	4105343	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170053_2171004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171102_2173097_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173156_2174122_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174111_2176973_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176975_2177482_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177586_2178795_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178796_2179735_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179896_2180370_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180366_2181317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181427_2181868_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181996_2183226_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183264_2184086_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184139_2185291_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185382_2185871_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188421_2190971_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191041_2193615_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193880_2194081_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194112_2194274_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194331_2194670_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194818_2195769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196543_2197212_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197193_2199149_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199391_2200141_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200153_2201017_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201020_2202436_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202569_2203298_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203436_2203637_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203812_2204211_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204234_2205635_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205753_2206506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206794_2207472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207498_2208278_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208274_2209159_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209176_2209956_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209940_2210699_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2210836_2211472_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211739_2212756_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212853_2213894_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214028_2215321_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216680_2217064_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217081_2217669_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217706_2218657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218755_2219706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	2476013	2534260	4105343	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2476013_2476964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477443_2478100_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478114_2479782_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479784_2480414_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480625_2481720_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481864_2482677_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_080501873.1|2482680_2484267_-	peptidoglycan-binding protein LysM	NA	NA	NA	NA	NA
WP_010930382.1|2484437_2485568_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485754_2486831_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486912_2487563_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487577_2488981_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489264_2490083_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490079_2490784_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491683_2492799_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492832_2493207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493229_2494387_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494399_2494633_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495267_2498237_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498251_2498461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498612_2499242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2499238_2501296_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501352_2502033_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502029_2502590_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502596_2503694_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503846_2504440_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504436_2505729_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505742_2506285_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506294_2507131_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507164_2508226_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508267_2509320_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509335_2509638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509779_2510730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2510908_2512603_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512599_2513685_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513732_2514632_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514642_2515287_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516308_2519551_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519561_2520716_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520942_2521905_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2522003_2522954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523052_2524003_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524012_2524702_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524761_2525199_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525244_2526138_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526185_2527358_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527354_2528509_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2528705_2529056_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529045_2529480_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529496_2530447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530594_2531062_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531042_2532200_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532265_2533192_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533309_2534260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	2576538	2643038	4105343	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576538_2577489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577858_2578431_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578433_2579444_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579436_2579937_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579947_2580289_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580357_2581092_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581108_2581378_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581400_2582189_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582235_2583252_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583468_2584911_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585089_2586709_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586829_2588650_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588728_2590261_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590294_2591941_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592010_2593033_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593050_2594184_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594186_2594876_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594875_2595661_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595704_2596469_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596507_2597929_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597994_2598699_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598746_2599166_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599178_2599586_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599769_2600480_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600606_2600897_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600914_2601397_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605902_2607057_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607362_2608379_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608625_2609414_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609480_2610161_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610157_2610928_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611026_2611977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612032_2612950_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612960_2614139_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614158_2615154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616742_2617351_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617338_2618379_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618396_2619359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619355_2620549_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620545_2621343_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621368_2622355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622373_2624413_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624614_2625295_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625308_2626220_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626216_2626795_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626933_2627839_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627846_2631266_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631253_2633854_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634809_2635442_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635835_2636594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636590_2637793_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637980_2638931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639838_2640984_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640970_2641726_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641842_2642022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642087_2643038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	2671153	2708565	4105343	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2671153_2672104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672202_2673153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673245_2673785_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673891_2674236_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674293_2675742_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675929_2676265_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677892_2679071_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679153_2679654_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679763_2680465_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2680476_2680941_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2680955_2681231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2681227_2682004_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682032_2682860_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682985_2683456_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683582_2684476_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684523_2685705_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685717_2686533_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2686666_2687194_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687190_2687688_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687835_2688213_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688434_2689385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689483_2690095_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690329_2691457_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691567_2692656_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692708_2693560_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693579_2694461_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694637_2695951_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696161_2696995_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696991_2697573_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697926_2698877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698892_2700008_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700110_2701037_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701036_2702275_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702271_2703039_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703039_2703741_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703822_2704269_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2705158_2705797_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706565_2707516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707614_2708565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	2807692	2862209	4105343	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2807692_2808643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808971_2809577_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809630_2810944_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811018_2811489_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811488_2812277_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812287_2813940_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814027_2814978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816139_2816646_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816642_2817407_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817422_2817707_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817771_2818761_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818932_2819862_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819833_2820520_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820553_2821099_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821143_2822409_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822405_2823308_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824489_2825434_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825528_2827046_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827087_2828716_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828823_2829705_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832817_2833192_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833216_2833555_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833598_2835233_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835271_2836618_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836725_2838147_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838216_2838801_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838903_2839854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839988_2841095_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841105_2842203_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842347_2843553_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843559_2844081_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844077_2844560_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844565_2844817_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844797_2845283_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845418_2848880_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848897_2849782_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849791_2850223_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850469_2850973_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851050_2852451_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852525_2853401_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853397_2854405_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854872_2855178_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855268_2855859_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856049_2857066_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857257_2859594_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859676_2860111_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860209_2861160_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861258_2862209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	2870234	2927020	4105343	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2870234_2871185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872891_2873158_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873865_2874204_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878757_2879360_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879456_2880746_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880803_2881535_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881531_2882335_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882331_2883420_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883416_2884346_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884494_2885640_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885661_2886612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2886942_2890764_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890920_2891589_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891593_2893267_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893285_2894605_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894609_2896925_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896980_2899149_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899145_2904326_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904424_2904739_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904966_2905212_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905306_2905825_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905924_2907130_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907245_2908643_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908759_2909338_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909410_2910802_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910969_2911920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912200_2912821_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912817_2913231_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913227_2914271_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914326_2914515_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914524_2915289_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915379_2916036_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916127_2916886_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916911_2918513_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918713_2919718_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919818_2920082_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920199_2920976_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921566_2922517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924900_2926013_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926069_2927020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	2957406	3001097	4105343	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2957406_2958357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2958477_2959374_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961651_2963877_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964041_2965130_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965086_2965740_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965787_2966585_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967116_2968067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968147_2969296_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969352_2970303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970401_2970707_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970735_2971170_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971171_2972416_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972412_2973123_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973137_2974049_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974411_2974816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974812_2975271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975277_2976186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976182_2977049_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977035_2977863_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977873_2979001_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980078_2981317_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981358_2982621_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982627_2983380_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983431_2983617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983892_2984357_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984388_2985048_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985192_2987301_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987297_2988248_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988351_2988972_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989075_2989816_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990950_2992075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992120_2992489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992730_2993681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994716_2995259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995456_2995627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995644_2996595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2996591_2997500_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997626_2998463_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998975_3000085_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000146_3001097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	3381043	3434784	4105343	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381043_3381994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382398_3383043_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383067_3383652_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383752_3384370_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384372_3386088_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386084_3386393_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386409_3387027_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387071_3387374_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387474_3388329_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388516_3388741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388910_3389183_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389600_3390008_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390377_3391172_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391272_3392508_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392576_3393593_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393604_3394981_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394977_3396174_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396170_3397709_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397705_3398965_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400905_3401856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402622_3403717_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403709_3405044_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404997_3405681_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405706_3406870_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3406866_3407868_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407867_3408740_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408736_3409486_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409482_3410274_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410270_3411410_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411685_3412471_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412504_3413287_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413290_3413680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3414819_3415683_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3415718_3416807_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416803_3417754_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418107_3421086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422012_3422891_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424839_3425790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425786_3426254_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426296_3427067_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3427087_3427888_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427898_3429308_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429402_3430188_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430427_3431444_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431551_3431944_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432081_3432762_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432766_3433738_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433833_3434784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	3440939	3500237	4105343	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3440939_3442703_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442814_3443693_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443805_3444621_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444624_3444876_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444960_3445977_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446307_3446529_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448889_3449807_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450304_3451513_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451592_3453164_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453281_3454217_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454405_3455350_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455917_3461635_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461640_3462768_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462823_3463450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3463721_3464738_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464833_3465544_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465540_3466530_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466625_3468257_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468259_3468997_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469152_3470025_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3470374_3471514_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471510_3472170_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472241_3472874_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472903_3473422_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473432_3474542_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474588_3475443_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475444_3476347_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477569_3478520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480274_3481264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3481439_3482228_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482224_3483256_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483274_3483838_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483893_3485414_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485677_3486382_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3486389_3487118_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487232_3487607_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487649_3488939_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488935_3490105_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490101_3490941_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491000_3491936_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491948_3492899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492997_3493960_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493991_3494351_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494475_3495378_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495379_3497152_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497186_3497963_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499286_3500237_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	3515175	3573248	4105343	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515175_3516126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516254_3517388_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517431_3518337_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518339_3520040_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520036_3520957_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520964_3521942_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522000_3523035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3525009_3525246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525372_3526236_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526324_3527146_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527225_3527963_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3527959_3528952_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3529104_3529728_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529772_3530921_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3533244_3534195_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534535_3535486_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535584_3536535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536831_3537329_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537371_3539147_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539154_3540021_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540027_3540762_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541931_3542726_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543015_3543606_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543639_3544968_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545042_3546188_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546299_3547298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547260_3547695_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549211_3550096_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550092_3551298_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551294_3552155_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3552267_3554058_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3554098_3554743_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3554764_3555073_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555238_3556525_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3557958_3558909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560860_3562075_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562180_3563170_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563166_3563775_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563787_3564417_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564413_3565034_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565065_3565857_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566708_3567164_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3567182_3568109_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568162_3569449_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570379_3571252_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571248_3572199_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572297_3573248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011742	Bordetella pertussis strain I735 chromosome, complete genome	4105343	4004411	4069323	4105343	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4004411_4004897_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004985_4005123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005115_4006096_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006362_4007172_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007211_4007892_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007885_4008344_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008355_4008718_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008800_4009484_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009539_4009848_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009866_4010181_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010177_4012652_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012659_4014051_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014047_4014233_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014211_4014913_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014909_4015731_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015711_4016836_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016828_4017848_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018053_4018944_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019188_4019980_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020062_4020437_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020414_4021824_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021816_4023199_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023533_4025138_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025215_4026187_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026197_4027124_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027514_4028465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028634_4029861_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030060_4030927_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030919_4031882_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031982_4032933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033031_4033982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034080_4035031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035027_4036521_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036517_4039625_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039621_4042690_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042686_4043937_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044117_4044870_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044911_4045556_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045564_4046545_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046644_4047388_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047470_4047818_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047915_4048758_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048802_4049690_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049716_4049905_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050002_4051460_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051446_4052973_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052991_4053459_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053458_4054481_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054601_4055342_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055396_4056497_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056498_4057689_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057808_4058825_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059143_4059815_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059811_4060720_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060931_4061579_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065439_4066507_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066517_4067327_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067416_4068190_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068372_4069323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
