The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	27282	70036	4106406	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	77634	136108	4106406	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	164893	225404	4106406	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	233336	286924	4106406	transposase,tRNA,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069018.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	390857	448366	4106406	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	589371	650562	4106406	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590818_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592705_593197_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593215_594289_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594335_595439_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595514_596135_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596155_596665_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596719_596971_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597034_598168_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598175_598562_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598558_601078_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601506_601845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601841_602348_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602409_603210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603320_604262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604355_605891_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607570_609421_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609424_610258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610257_611199_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611450_612422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612563_614852_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615158_616067_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616121_617087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617161_618823_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618894_619605_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619571_619736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619753_620704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621402_621786_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621843_622446_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622998_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626039_627089_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627236_627815_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635742_636693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636791_637592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637653_638037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638048_639482_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640020_640770_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642154_642577_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642593_643694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643790_645308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646244_647126_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647207_648302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648595_649546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	655886	702077	4106406	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656952_657192_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661055_662024_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665121_666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668789_669545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672858_674601_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677291_678242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678493_678700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678771_679383_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679937_680189_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680181_680871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680888_681110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681127_682078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682717_683203_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683189_684467_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684469_685888_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685916_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688373_689324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690796_690997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691783_692206_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692213_692714_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692968_693487_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693496_693826_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693843_694134_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697208_697742_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697738_698128_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698120_702077_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	708243	763222	4106406	transposase,tRNA	Planktothrix_phage(50.0%)	47	NA	NA
WP_003814636.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711632_712607_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712623_713940_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713971_714469_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715244_716294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716290_717085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717579_718137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719266_720217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722354_723584_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723586_725029_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725133_726279_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726310_727108_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727132_728692_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728688_731061_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731170_732274_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732273_732966_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733109_733811_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733795_734173_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734904_735855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|735953_736904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737063_737936_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738276_738495_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738534_739914_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739955_741353_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741392_743045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743048_743933_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743932_744874_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744952_746572_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746738_747554_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747621_748191_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748191_749142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750927_752193_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752350_753301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754150_756595_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756714_757686_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757817_758342_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758301_759252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759473_761669_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761741_762170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762271_763222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	854100	903364	4106406	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|854100_855051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855068_855623_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855624_856059_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856055_856490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856473_857277_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857293_858109_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858105_858921_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859067_859769_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859796_861755_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861837_862788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863008_863677_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863800_864907_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864919_868033_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868029_869523_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869537_870209_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870252_870747_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870887_871535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871638_873687_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873683_875696_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875721_877056_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877164_878157_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878223_880308_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880332_881304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881432_882464_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883789_884713_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884790_885615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885811_886828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887024_888008_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889606_890995_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891025_892015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894462_896694_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897949_898696_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900450_901062_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901055_902273_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902413_903364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	912976	977916	4106406	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|912976_913927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913923_915756_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916154_916814_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916907_917054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917162_917330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917341_918022_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918303_919020_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919034_920336_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922480_925369_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925592_926945_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926973_927495_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927491_928946_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928980_929229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929334_930210_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930235_931291_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931303_932095_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932127_933498_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934674_935625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935677_935899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936058_936271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936390_937509_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938014_938266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938378_939329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939325_939709_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939763_941578_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941727_942555_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942600_943581_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943577_943790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943786_944968_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945131_945866_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945867_948480_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948615_950529_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951144_951555_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952836_953787_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953783_954758_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954882_955794_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956070_956463_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956592_957543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957572_957755_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958527_959709_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959924_960602_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960598_961324_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|961449_962031_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|962401_965083_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|965082_966216_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|966208_967294_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|967380_968280_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|968276_969605_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|969619_970291_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|970478_972194_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|972195_972555_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|972746_973061_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|973103_974324_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|974320_975262_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|975258_976248_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|976282_976867_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|976965_977916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	997316	1060489	4106406	transposase	Enterococcus_phage(16.67%)	53	NA	NA
WP_005012067.1|997316_998267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998371_999421_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999558_1000575_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002083_1002656_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002715_1003447_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010930121.1|1005245_1008425_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008421_1009804_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009873_1010125_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010270_1010885_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011071_1013186_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013261_1014113_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014109_1014736_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014732_1016487_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016779_1019485_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019497_1021159_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021171_1022962_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023183_1024359_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024401_1025352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025450_1026191_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026385_1028422_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028439_1029450_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029567_1030761_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030790_1031564_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031560_1032751_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032776_1033715_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033711_1036060_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036214_1036856_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036959_1038093_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038185_1038338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038369_1038918_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038936_1039422_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039599_1040538_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040540_1040858_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040903_1041848_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043528_1044179_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044232_1044568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044564_1045425_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045441_1045723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045796_1046060_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046303_1047254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047552_1048290_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048725_1049049_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049083_1049644_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049764_1050640_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050652_1051600_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051701_1051995_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052021_1054079_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054093_1054594_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054667_1056374_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057237_1058290_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058342_1058732_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058740_1059373_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059472_1060489_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1066473	1126536	4106406	holin,transposase,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1066473_1067901_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068838_1069855_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070187_1071123_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071172_1073053_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073119_1073464_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073608_1074745_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074741_1075815_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075972_1077409_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077499_1078141_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078476_1079493_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081535_1082486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083688_1085110_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085373_1086090_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086174_1086492_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086532_1086946_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086947_1087307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087349_1088894_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088977_1089808_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089842_1090997_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091039_1091912_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092028_1094317_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095523_1095988_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096014_1096965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096982_1097120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097332_1098109_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098153_1099011_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099032_1100049_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100183_1101224_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101418_1103500_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103735_1105229_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105459_1106254_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106474_1107833_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107829_1108672_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108690_1110577_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110518_1110770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110814_1111447_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111465_1112068_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112219_1113170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113750_1114458_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114816_1115803_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115942_1116956_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116952_1117903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117920_1118061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1118015_1118474_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118510_1119824_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119841_1120213_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120209_1121673_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121813_1122542_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122523_1125373_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125585_1126536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1157602	1219773	4106406	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157602_1158553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158651_1159275_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159448_1161731_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161885_1164582_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164707_1165196_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167606_1170477_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170522_1171737_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171966_1173394_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173491_1174583_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174595_1175354_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175441_1176344_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176340_1177291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177420_1178404_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178458_1179181_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180659_1182015_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182095_1184471_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184635_1186711_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186772_1187573_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187674_1188637_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188624_1189380_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189487_1191125_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191192_1191930_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192032_1192608_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192780_1193317_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193319_1193664_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193679_1194525_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194563_1195943_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196020_1196902_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1197000_1197951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197947_1198358_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198465_1199320_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199312_1200275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200320_1201445_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201550_1202429_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202553_1203333_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203486_1204908_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205342_1207040_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207266_1208208_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208534_1209281_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209288_1210215_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210336_1211254_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211293_1212247_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212271_1212850_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214523_1215132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215209_1215563_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215646_1216636_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216632_1216821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216838_1217789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217875_1218826_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218822_1219773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1270701	1327912	4106406	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270701_1271652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275398_1276010_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276232_1277693_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277789_1279382_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279735_1279993_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279994_1281335_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281430_1282120_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282132_1283563_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285287_1286109_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286119_1287691_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287719_1288697_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288723_1289527_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289523_1290318_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290325_1291561_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291553_1291988_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292737_1293688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294309_1296037_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296148_1297507_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297563_1297782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297799_1298750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298790_1299861_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299883_1300762_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300933_1301905_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302067_1302910_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303071_1303752_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303745_1304915_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304911_1305943_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305986_1307228_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307262_1308795_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308875_1309499_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309529_1310141_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310176_1310647_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311078_1312083_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312119_1313634_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313637_1314597_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314625_1315429_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315430_1317065_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317148_1318210_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318408_1318678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318681_1319206_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319621_1320572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320568_1321603_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321711_1322350_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322644_1322872_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322994_1323708_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323952_1324903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1325006_1325288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325402_1326851_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326961_1327912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1418145	1470298	4106406	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418145_1419096_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419113_1419266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419262_1419616_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419628_1419991_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420032_1420458_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420660_1421917_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422115_1423096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423245_1424487_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424585_1425536_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425544_1426240_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429061_1429661_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429671_1431837_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431860_1433645_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433644_1433734_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434428_1434701_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434700_1436767_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436763_1437714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437812_1438763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438878_1439211_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439207_1439894_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439880_1440840_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440881_1443242_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443241_1443874_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443975_1445316_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445362_1446718_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446843_1447488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447432_1447750_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448022_1448538_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448631_1448793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448808_1449564_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449902_1450109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450116_1450776_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451070_1453275_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453385_1454609_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454731_1455706_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455773_1456967_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456981_1457782_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457778_1459635_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459631_1460237_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460255_1461641_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462366_1463593_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463681_1464464_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464562_1465513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465539_1466313_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466324_1467566_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469347_1470298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1514223	1582309	4106406	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1514223_1514712_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514829_1515408_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515513_1515882_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515980_1516931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516937_1518050_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518736_1519939_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519974_1520121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520142_1522803_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522815_1526220_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526887_1529113_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529159_1529486_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529536_1530145_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530243_1531194_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531263_1532028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532024_1532624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532727_1533579_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533638_1534265_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534261_1535212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535310_1536423_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536412_1537414_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537519_1539031_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539027_1540332_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540443_1541004_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541271_1541826_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542281_1542497_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542751_1545349_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545345_1546533_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547191_1547806_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547894_1549022_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549033_1549939_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550831_1551782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551963_1552716_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552784_1553444_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553440_1554169_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554181_1556461_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556485_1556689_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556730_1557363_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557498_1558416_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558412_1559126_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559363_1560134_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560138_1560738_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560982_1562473_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562531_1562816_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562953_1563109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563381_1564308_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564444_1565185_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565351_1566728_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566909_1567815_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569466_1571269_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571395_1572037_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572135_1573086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573107_1574328_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574513_1575926_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575989_1577057_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577056_1578544_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578553_1579498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579657_1580356_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580433_1581339_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581358_1582309_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1618258	1673849	4106406	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618258_1619209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619267_1620041_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620033_1621590_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621586_1622537_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623863_1624466_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624705_1625407_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625400_1626183_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626367_1627318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627416_1628154_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628343_1629102_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629148_1630138_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630315_1631284_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632823_1633792_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633800_1634742_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635215_1636226_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636216_1637731_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637727_1639074_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639076_1640111_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640160_1641786_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642338_1643289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643393_1644341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644394_1646209_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646201_1646876_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647005_1650080_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650093_1650393_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650707_1651331_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651574_1652444_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652421_1653366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653451_1654378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654490_1655270_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655260_1656457_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656487_1657438_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657659_1658349_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658413_1659169_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659220_1660213_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660222_1661176_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661291_1662254_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663655_1664084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664080_1665031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665324_1666062_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666485_1667673_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667676_1668057_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669776_1670748_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670761_1671475_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671479_1672397_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672503_1672800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672898_1673849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1831616	1890886	4106406	transposase,tRNA,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831616_1832567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832691_1833501_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1833701_1834652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835925_1837143_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838199_1839102_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839178_1840051_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840181_1840550_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840607_1841654_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841849_1843106_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843110_1844448_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844597_1845554_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845656_1846589_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846704_1847025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847017_1847377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847424_1848999_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849051_1849996_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850013_1850844_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850836_1852471_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852467_1853823_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854729_1856307_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856310_1857585_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857682_1858057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859772_1860906_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860943_1861549_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861545_1862364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862435_1865060_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865046_1865301_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865367_1865949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866252_1866513_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866678_1867302_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867301_1868075_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868071_1869280_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869305_1869779_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869852_1870803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870901_1871852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871950_1873300_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874065_1874821_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874913_1877796_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878118_1878544_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878571_1879720_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879716_1880223_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880229_1881525_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881583_1882870_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882871_1883510_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883512_1884673_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884699_1886055_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886058_1887129_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887267_1887504_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887591_1888698_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888663_1889968_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889986_1890886_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1901126	1945449	4106406	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901126_1902077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902175_1903126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903325_1904411_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904426_1905188_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1905184_1906144_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1906206_1906707_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906739_1907483_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907578_1907818_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907831_1907984_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908069_1909560_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909651_1910590_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910586_1910763_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910765_1911428_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913049_1913193_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913189_1914164_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914058_1914313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914330_1915281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915277_1916552_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916655_1917849_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917845_1918499_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918495_1919932_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919919_1920279_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921093_1921234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921251_1922202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923247_1925113_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925370_1926891_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926978_1927629_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1928577_1929873_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929894_1930779_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930877_1931753_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931742_1932099_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932229_1933204_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933333_1933513_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933610_1934135_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934145_1934982_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935094_1935466_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935462_1936014_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936029_1937721_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937769_1938450_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938697_1939162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939331_1940261_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940273_1940921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940994_1942812_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942895_1943846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944498_1945449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	1975222	2039591	4106406	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975222_1976173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976394_1977345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977443_1978409_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978546_1979446_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982040_1983528_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983538_1984735_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984807_1986127_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986123_1986999_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987029_1988178_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988195_1988510_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988531_1989254_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989253_1990072_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990076_1990604_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990609_1991866_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992224_1993364_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993441_1994314_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995184_1996135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996094_1996730_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997089_1998412_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998730_1999552_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000976_2001549_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001588_2003418_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003380_2004439_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004476_2004938_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005022_2005769_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007259_2010490_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010556_2011888_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012140_2012515_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012617_2013796_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013806_2014397_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014507_2015314_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015339_2016134_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017134_2018109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018267_2018780_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018936_2019908_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021652_2022459_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2022455_2023757_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2023707_2024472_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024585_2025356_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025440_2026628_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026700_2027075_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2027175_2028438_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028434_2029292_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029464_2030466_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030917_2031868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033383_2034583_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034951_2035188_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035251_2035419_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2035532_2037338_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2037591_2038542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038640_2039591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	2171120	2220773	4106406	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171120_2172071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172169_2174164_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174223_2175189_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175178_2178040_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178042_2178549_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178653_2179862_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179863_2180802_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180963_2181437_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181433_2182384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182494_2182935_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183063_2184293_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184331_2185153_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185206_2186358_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186449_2186938_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189488_2192038_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192108_2194682_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194947_2195148_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195179_2195341_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195398_2195737_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195885_2196836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197610_2198279_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198260_2200276_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2200458_2201208_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201220_2202084_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202087_2203503_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203636_2204365_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204503_2204704_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204879_2205278_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205301_2206702_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206820_2207573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2207861_2208461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208565_2209345_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209341_2210226_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210243_2211023_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2211007_2211766_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211891_2212539_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212806_2213823_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213920_2214961_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215095_2216388_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217747_2218131_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218148_2218736_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218773_2219724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219822_2220773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	2477080	2535324	4106406	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477080_2478031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478510_2479167_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479181_2480849_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480851_2481481_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481692_2482787_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482931_2483744_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483747_2485451_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485501_2486632_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486818_2487895_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487976_2488627_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488641_2490045_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490328_2491147_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491143_2491848_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492747_2493863_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493896_2494271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494293_2495451_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495463_2495697_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496331_2499301_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499315_2499525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499676_2500306_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500302_2502393_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502416_2503097_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503093_2503654_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503660_2504758_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504910_2505504_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505500_2506793_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506806_2507349_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507358_2508195_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508228_2509290_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509331_2510384_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510399_2510702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510843_2511794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511811_2511976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511972_2513667_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513663_2514749_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514796_2515696_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515706_2516351_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517372_2520615_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520625_2521780_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2522006_2522969_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523067_2524018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524116_2525067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525076_2525766_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525825_2526263_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526308_2527202_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527249_2528422_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528418_2529573_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2529769_2530120_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530109_2530544_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530560_2531511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531658_2532126_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532106_2533264_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533329_2534256_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534373_2535324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	2577602	2644102	4106406	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577602_2578553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578922_2579495_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579497_2580508_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580500_2581001_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2581011_2581353_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581364_2582156_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582172_2582442_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582464_2583253_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583299_2584316_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584532_2585975_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586153_2587773_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587893_2589714_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589792_2591325_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591358_2593005_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593074_2594097_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594114_2595248_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595250_2595940_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595939_2596725_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596768_2597533_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597571_2598993_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599058_2599763_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599810_2600230_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600242_2600650_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600833_2601544_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601670_2601961_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601978_2602461_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606966_2608121_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608426_2609443_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609689_2610478_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610544_2611225_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611221_2611992_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612090_2613041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613096_2614014_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614024_2615203_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615222_2616218_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617806_2618415_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618402_2619443_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619460_2620423_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620419_2621613_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621609_2622407_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622432_2623419_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623437_2625477_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625678_2626359_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626372_2627284_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627280_2627859_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627997_2628903_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628910_2632330_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632317_2634918_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635873_2636506_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636899_2637658_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637654_2638857_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639044_2639995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640902_2642048_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642034_2642790_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642906_2643086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643151_2644102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	2672217	2709629	4106406	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672217_2673168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673266_2674217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674309_2674849_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674955_2675300_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675357_2676806_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676993_2677329_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678956_2680135_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680217_2680718_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680827_2681529_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2681540_2682005_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2682019_2682295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682291_2683068_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683096_2683924_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684049_2684520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684646_2685540_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685587_2686769_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686781_2687597_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2687730_2688258_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688254_2688752_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688899_2689277_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689498_2690449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690547_2691159_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691393_2692521_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692631_2693720_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693772_2694624_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694643_2695525_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695701_2697015_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697225_2698059_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698055_2698637_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698990_2699941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699956_2701072_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701174_2702101_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702100_2703339_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703335_2704103_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704103_2704805_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704886_2705333_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2706222_2706861_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707629_2708580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708678_2709629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	2808756	2863273	4106406	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808756_2809707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810035_2810641_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810694_2812008_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812082_2812553_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812552_2813341_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813351_2815004_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815091_2816042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817203_2817710_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817706_2818471_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818486_2818771_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818835_2819825_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819996_2820926_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820897_2821584_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821617_2822163_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822207_2823473_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823469_2824372_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825553_2826498_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826592_2828110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828151_2829780_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829887_2830769_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833881_2834256_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834280_2834619_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834662_2836297_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836335_2837682_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837789_2839211_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839280_2839865_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839967_2840918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841052_2842159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842169_2843267_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843411_2844617_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844623_2845145_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845141_2845633_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845629_2845881_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845861_2846347_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846482_2849944_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849961_2850846_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850855_2851287_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851533_2852037_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852114_2853515_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853589_2854465_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854461_2855469_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855936_2856242_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856332_2856923_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857113_2858130_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858321_2860658_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860740_2861175_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861273_2862224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862322_2863273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	2871298	2928084	4106406	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871298_2872249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873955_2874222_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874929_2875268_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879821_2880424_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880520_2881810_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881867_2882599_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882595_2883399_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883395_2884484_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884480_2885410_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885558_2886704_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886725_2887676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887693_2887852_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2888006_2891828_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891984_2892653_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892657_2894331_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894349_2895669_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895673_2897989_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898044_2900213_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900209_2905399_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905488_2905803_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906030_2906276_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906370_2906889_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906988_2908194_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908309_2909707_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909823_2910402_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910474_2911866_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912033_2912984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913264_2913885_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913881_2914295_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914291_2915335_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915390_2915579_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915588_2916353_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916443_2917100_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917191_2917950_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917975_2919577_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919777_2920782_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920882_2921146_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921263_2922040_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922630_2923581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925964_2927077_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927133_2928084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	2958470	3002161	4106406	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958470_2959421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959438_2959588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959541_2960438_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962715_2964941_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965105_2966194_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966150_2966804_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966851_2967649_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968180_2969131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969205_2970360_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970416_2971367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971465_2971771_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971799_2972234_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972235_2973480_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973476_2974187_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974201_2975113_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975475_2975880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975876_2976335_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976341_2977250_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977246_2978113_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978099_2978927_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978937_2980065_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981142_2982381_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982422_2983685_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983691_2984444_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984495_2984681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984956_2985421_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985452_2986112_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986256_2988365_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988361_2989312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989415_2990036_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990127_2990880_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992014_2993139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993184_2993553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993794_2994745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995780_2996323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996520_2996691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996708_2997659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997655_2998621_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998690_2999527_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000039_3001149_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001210_3002161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	3382106	3435847	4106406	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382106_3383057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383461_3384106_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384130_3384715_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384815_3385433_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385435_3387151_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387147_3387456_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387472_3388090_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388134_3388437_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388537_3389392_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389579_3389804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389973_3390246_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390663_3391071_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391440_3392235_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392335_3393571_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393639_3394656_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394667_3396044_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396040_3397237_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397233_3398772_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398768_3400028_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401968_3402919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403685_3404780_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404772_3406107_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406060_3406744_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406769_3407933_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407929_3408931_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408930_3409803_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409799_3410549_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410545_3411337_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411333_3412473_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412748_3413534_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413567_3414350_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414353_3414743_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415882_3416746_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416781_3417870_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417866_3418817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419170_3422149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423075_3423954_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425902_3426853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426849_3427317_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427359_3428130_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428150_3428951_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428961_3430371_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430465_3431251_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431490_3432507_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432614_3433007_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433144_3433825_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433829_3434801_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434896_3435847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	3442002	3501300	4106406	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3442002_3443766_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443877_3444756_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444868_3445684_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445687_3445939_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446023_3447040_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447370_3447592_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449952_3450870_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451367_3452576_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452655_3454227_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454344_3455280_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455468_3456413_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456980_3462698_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462703_3463831_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463886_3464513_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464784_3465801_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465896_3466607_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466603_3467593_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467688_3469320_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469322_3470060_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470215_3471088_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471356_3472577_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472573_3473233_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473304_3473937_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473966_3474485_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474495_3475605_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475651_3476506_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476507_3477410_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478632_3479583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481337_3482327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482323_3482482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482502_3483291_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483287_3484319_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484337_3484901_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484956_3486477_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486740_3487445_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487452_3488190_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488295_3488670_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488712_3490002_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489998_3491168_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491164_3492004_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492063_3492999_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493011_3493962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494060_3495023_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495054_3495414_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495538_3496441_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496442_3498215_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498249_3499026_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500349_3501300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	3516238	3574311	4106406	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516238_3517189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517317_3518451_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518494_3519400_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519402_3521103_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521099_3522020_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522027_3523005_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523063_3524098_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526072_3526309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526435_3527299_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527387_3528209_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528288_3529026_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3529022_3530015_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530128_3530791_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530835_3531984_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534307_3535258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535598_3536549_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536647_3537598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537894_3538392_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538434_3540210_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540217_3541084_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541090_3541825_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542994_3543789_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544078_3544669_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544702_3546031_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546105_3547251_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547362_3548361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548323_3548758_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550274_3551159_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551155_3552361_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552357_3553218_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553330_3555121_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555161_3555827_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555827_3556136_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556301_3557588_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3559021_3559972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561923_3563138_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563243_3564233_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564229_3564838_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564850_3565480_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565476_3566097_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566128_3566920_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567771_3568227_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568245_3569172_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569225_3570512_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571442_3572315_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572311_3573262_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573360_3574311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011740	Bordetella pertussis strain I461 chromosome, complete genome	4106406	4028577	4082009	4106406	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028577_4029528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029697_4030924_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031123_4031990_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031982_4032945_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033045_4033996_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034094_4035045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035143_4036094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036090_4037584_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037580_4040688_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040684_4043753_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043749_4045000_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045180_4045942_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045974_4046625_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046627_4047467_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047707_4048451_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048533_4048881_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048978_4049821_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049865_4050753_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050779_4050968_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051065_4052523_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052509_4054036_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054054_4054522_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054521_4055544_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055664_4056384_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056459_4057560_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057561_4058752_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058871_4059888_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060206_4060878_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060874_4061783_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061994_4062642_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066493_4067570_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067580_4068390_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068479_4069253_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069253_4069418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069435_4070386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070274_4071297_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071286_4072441_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072480_4073893_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074017_4074884_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074885_4075710_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075706_4076468_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076548_4077235_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077408_4078416_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078412_4079192_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079249_4080512_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081058_4082009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
