The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	0	59497	4109548	tRNA,transposase	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077068995.1|21943_22894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	70134	123122	4109548	tRNA,transposase	Planktothrix_phage(20.0%)	51	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	165944	226455	4109548	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165944_166895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168338_169241_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169218_169848_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170130_171561_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171594_172224_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173904_174588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175352_176303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177418_177946_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178037_178853_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178913_179648_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182387_183473_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183476_185381_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185377_189052_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189683_190106_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190133_190553_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190581_191055_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191154_191652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191806_194077_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194125_195358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195456_196407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196509_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197141_198035_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198429_199530_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199611_199986_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200045_202910_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203054_203795_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203864_205076_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205104_206073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|206686_207637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|207661_208561_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|208715_209264_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|209302_210022_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|210093_213036_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|213629_216425_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|216882_217815_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|217926_219276_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|219307_220033_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|220083_220935_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|221064_221751_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|221750_222395_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|222451_222727_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|222752_223049_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|223094_223874_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|223879_224920_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|225024_225348_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_005013747.1|225504_226455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	234387	287975	4109548	protease,tRNA,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|234387_235338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235424_236375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236371_237322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237420_238218_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239167_239578_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240599_241343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241386_242430_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242600_244703_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246113_247070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247088_247580_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247576_248932_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248932_249631_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249627_250329_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250581_251631_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251736_252678_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252674_254564_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254650_255289_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255431_256817_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256747_257284_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257435_258827_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258843_259824_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259959_260943_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261007_261907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262013_263768_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263775_264900_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264913_265894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266624_267575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268134_268680_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268763_270383_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270398_271553_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271566_271692_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271688_273440_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273436_275116_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275178_275727_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276869_277148_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278191_279142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279159_279306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279419_279581_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279588_279729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280247_280697_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280706_281318_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281476_282331_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282350_283733_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283797_284439_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284578_285037_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285061_285838_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285891_287028_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287024_287975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	391908	449417	4109548	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391908_392859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392995_393913_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393909_394158_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394154_395360_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395432_396428_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396450_397671_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397667_398312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400042_400852_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401156_402110_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402208_403192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403118_403820_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403868_404639_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404635_405814_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405981_407688_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407684_408581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408621_410211_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410260_411253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411321_411921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412381_413362_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413437_414388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414476_415391_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415387_416047_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416136_417060_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417065_417521_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417517_418621_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418579_418849_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418808_420428_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420424_421483_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421612_422107_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422199_423177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423372_424578_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424574_426086_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426101_427415_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427605_427785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428194_428929_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431373_432324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432455_432854_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433264_433735_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433823_434168_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434267_435668_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437456_437975_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438085_438841_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439036_440269_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440261_441047_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441113_442085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442095_443073_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443198_444371_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444397_445426_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445491_446685_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448466_449417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	591471	652662	4109548	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591471_592422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592918_593788_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593784_594606_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594805_595297_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595315_596389_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596435_597539_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597614_598235_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598255_598765_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598819_599071_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599134_600268_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600275_600662_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600658_603178_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603606_603945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603941_604448_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604509_605310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605420_606362_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606455_607991_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609670_611521_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611524_612358_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612357_613299_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613550_614522_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614663_616952_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617258_618167_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618221_619187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619261_620923_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620994_621705_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621671_621836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621853_622804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623502_623886_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623943_624546_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624563_624965_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625098_625992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625988_626570_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627364_628099_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628139_629189_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629336_629915_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630301_631279_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631372_635767_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635967_636816_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636974_637787_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637842_638793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638891_639692_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639753_640137_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640148_641582_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641788_642118_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642120_642870_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643052_643973_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644019_644232_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644254_644677_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644693_645794_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645890_647408_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647483_648323_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648344_649226_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649307_650402_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650695_651646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651720_652662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	657986	704177	4109548	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657986_659012_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659052_659292_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659361_660951_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660950_661499_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661579_662152_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662170_663082_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663155_664124_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664246_665320_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665324_667145_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667221_668172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668260_668596_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668729_669380_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669401_670820_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670889_671645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671613_672372_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672382_673264_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673280_673988_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673990_674749_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674958_676701_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676693_677218_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677257_678052_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678219_679293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679391_680342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680593_680800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680871_681483_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682037_682289_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682281_682971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682988_683210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683227_684178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684817_685303_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685289_686567_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686569_687988_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688016_689072_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689077_689320_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689442_690045_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690473_691424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692098_692350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692412_692895_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692896_693097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693096_693492_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693488_693887_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693883_694306_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694313_694814_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695068_695587_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695596_695926_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695943_696234_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696259_698872_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698881_699241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699308_699842_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699838_700228_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700220_704177_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	710343	764273	4109548	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710343_712074_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712126_712555_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712557_713238_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713237_713696_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713732_714707_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714723_716040_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716071_716569_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716655_717345_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717344_718394_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718390_719185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719353_719704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719679_720237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721366_722317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724454_725684_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725686_727129_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727233_728379_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728410_729208_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729232_730792_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730788_733161_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733270_734374_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734373_735066_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735209_735911_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735895_736273_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737004_737955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738114_738987_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739327_739546_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739585_740965_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741006_742404_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742443_744096_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744099_744984_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744983_745925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746003_747623_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747789_748605_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748672_749242_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749242_750193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750847_751945_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751978_753244_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753401_754352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754595_755186_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755201_757646_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757765_758737_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758868_759393_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759352_760303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760524_762720_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762792_763221_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763322_764273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	855151	904415	4109548	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855151_856102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856119_856674_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856675_857110_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857106_857541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857524_858328_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858344_859160_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859156_859972_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860118_860820_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860847_862806_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862888_863839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864059_864728_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864851_865958_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865970_869084_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869080_870574_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870588_871260_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871303_871798_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871938_872586_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872689_874738_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874734_876747_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876772_878107_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878215_879208_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879274_881359_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881383_882355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882483_883515_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883518_884670_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884840_885764_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885841_886666_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886862_887879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888075_889059_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890657_892046_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892076_893066_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893176_894409_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894690_895491_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895513_897745_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898532_898979_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899000_899747_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899890_900868_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901501_902113_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902106_903324_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903464_904415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	914027	978967	4109548	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914027_914978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914974_916807_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917205_917865_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917958_918105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918213_918381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918392_919073_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919354_920071_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920085_921387_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923531_926420_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926643_927996_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928024_928546_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928542_929997_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930031_930280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930385_931261_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931286_932342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932354_933146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933178_934549_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935725_936676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936728_936950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937109_937322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937441_938560_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939065_939317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939429_940380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940376_940760_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940814_942629_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942778_943606_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943651_944632_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944628_944841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944837_946019_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946182_946917_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946918_949531_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949666_951580_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952195_952606_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952703_953789_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953887_954838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954834_955809_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955933_956845_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957121_957514_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957643_958594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958623_958806_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959578_960760_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960975_961653_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961649_962375_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962500_963082_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963452_966134_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966133_967267_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967259_968345_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968431_969331_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969327_970656_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970670_971342_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971529_973245_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973246_973606_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973797_974112_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974154_975375_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975371_976313_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976309_977299_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977333_977918_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978016_978967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	998367	1049332	4109548	transposase	Enterococcus_phage(25.0%)	42	NA	NA
WP_010929591.1|998367_999318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000609_1001626_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003134_1003707_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006274_1009454_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009450_1010833_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010902_1011154_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011299_1011914_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012100_1014215_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014290_1015142_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015138_1015765_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015761_1017516_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017808_1020514_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020526_1022188_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022200_1023991_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024212_1025388_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025430_1026381_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026479_1027430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027528_1028269_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028463_1030500_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030517_1031528_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031645_1032839_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032868_1033642_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033638_1034829_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034854_1035793_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035789_1038138_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038292_1038934_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1039037_1040171_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040263_1040416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040447_1040996_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1041014_1041500_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041677_1042616_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042618_1042936_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042981_1043926_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045606_1046257_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046310_1046646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046642_1047503_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047519_1047801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047874_1048138_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048381_1049332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	1061550	1119981	4109548	protease,holin,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1061550_1062567_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1063355_1064405_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064401_1066045_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066041_1066929_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067069_1067543_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067532_1068555_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068551_1069979_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070916_1071933_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072265_1073201_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073250_1075131_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075197_1075542_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075686_1076823_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076819_1077893_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078050_1079487_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079577_1080219_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080554_1081571_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083511_1084462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085766_1087188_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087451_1088168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088252_1088570_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088610_1089024_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089025_1089385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089427_1090972_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091055_1091886_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091920_1093075_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093117_1093990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094106_1096395_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097601_1098066_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098092_1099043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099060_1099198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099410_1100187_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100231_1101089_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101110_1102127_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102261_1103302_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103496_1105578_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105813_1107307_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1107537_1108332_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108552_1109911_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109907_1110750_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110768_1112655_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112596_1112848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112892_1113525_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113543_1114146_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1114297_1115248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115828_1116536_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116894_1117881_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118020_1119034_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119030_1119981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	1319005	1387492	4109548	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319005_1319956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320724_1321363_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322252_1322699_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322780_1323482_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323482_1324250_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324246_1325485_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325484_1326411_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326513_1327629_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327644_1328595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328948_1329530_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329526_1330360_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330570_1331884_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332060_1332942_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332961_1333813_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333865_1334954_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335064_1336192_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336426_1337038_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337136_1338087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338308_1338686_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338833_1339331_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339327_1339855_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339988_1340804_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340816_1341998_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342045_1342939_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343065_1343536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343661_1344489_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344517_1345294_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345290_1345566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345580_1346045_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346056_1346758_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346867_1347368_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347450_1348629_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350256_1350592_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350779_1352228_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352285_1352630_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352736_1353276_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353368_1354319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354336_1354576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355057_1355489_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1355670_1356075_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357311_1357635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357637_1358525_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358557_1358983_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359054_1359408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359647_1360154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360192_1361524_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361583_1362399_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362395_1363250_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366312_1368856_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370222_1371977_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371973_1374094_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374098_1376294_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376290_1379632_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382434_1383385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383450_1383630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383746_1384502_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384488_1385634_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386541_1387492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	1447983	1503471	4109548	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447983_1448934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450135_1450582_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450574_1452050_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452046_1452802_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452794_1453805_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453794_1455471_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455783_1456116_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456129_1456525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456534_1456861_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456857_1457184_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457110_1458133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458129_1458480_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458527_1458956_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458963_1460337_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460477_1460855_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461117_1462425_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462485_1463316_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463312_1463801_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463842_1465363_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465406_1465883_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466686_1469284_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469313_1470135_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470861_1471611_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471794_1472673_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472770_1473487_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473501_1474062_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474228_1474993_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475012_1475870_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475866_1477066_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477105_1478440_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478492_1480829_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480954_1481518_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481526_1482618_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482689_1483145_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483145_1483940_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483936_1485118_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485104_1485710_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485706_1486480_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486491_1487319_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487480_1489844_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489911_1490631_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490754_1491180_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1491214_1492165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492282_1493209_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493274_1494432_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494412_1494880_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495027_1495978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495994_1496429_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496418_1496769_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496965_1498120_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1498116_1499289_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499336_1500230_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500275_1500713_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500772_1501462_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501471_1502422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502520_1503471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	1598168	1658080	4109548	tRNA,transposase	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1598168_1598657_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598774_1599353_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599458_1599827_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599925_1600876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600882_1601995_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602681_1603884_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603919_1604066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604087_1606748_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1606760_1610165_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610832_1613058_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613104_1613431_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613481_1614090_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614188_1615139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615237_1616188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616257_1617022_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617018_1617618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617721_1618573_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618632_1619259_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619255_1620206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620304_1621417_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621406_1622408_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622513_1624025_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624021_1625326_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625437_1625998_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626265_1626820_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627275_1627491_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627745_1630343_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630339_1631527_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632185_1632800_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1632888_1634016_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634027_1634933_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635825_1636776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636957_1637710_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637778_1638438_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638434_1639163_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639175_1641455_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641479_1641683_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641724_1642357_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642492_1643410_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643406_1644120_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644357_1645128_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645132_1645732_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645976_1647467_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647525_1647810_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1647947_1648103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1648375_1649302_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649438_1650179_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650345_1651722_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651903_1652809_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654460_1656263_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1656389_1657031_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657129_1658080_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	1703252	1758843	4109548	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703252_1704203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704261_1705035_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705027_1706584_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706580_1707531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708857_1709460_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709699_1710401_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710394_1711177_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711361_1712312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712410_1713148_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713337_1714096_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714142_1715132_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715309_1716278_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717817_1718786_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718794_1719736_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720209_1721220_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721210_1722725_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722721_1724068_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724070_1725105_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725154_1726780_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727332_1728283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728387_1729335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729388_1731203_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731195_1731870_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731999_1735074_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735087_1735387_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735701_1736325_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1736568_1737438_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737415_1738360_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738445_1739372_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739484_1740264_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740254_1741451_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741481_1742432_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742653_1743343_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743407_1744163_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744214_1745207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745216_1746170_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746285_1747248_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748649_1749078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749074_1750025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750318_1751056_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751479_1752667_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1752670_1753051_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754770_1755742_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755755_1756469_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756473_1757391_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757497_1757794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757892_1758843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2003564	2076777	4109548	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|2003564_2004515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2004966_2005968_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2006140_2006998_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2006994_2008257_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2008357_2008732_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2008804_2009992_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2010076_2010847_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2010960_2011725_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2011675_2012977_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2012973_2013780_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2015524_2016496_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016652_2017165_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2017323_2018298_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2019298_2020093_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2020118_2020925_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2021035_2021626_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2021636_2022815_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2022917_2023292_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2023544_2024876_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2024942_2028173_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2029663_2030410_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2030494_2030956_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2030993_2032052_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2032014_2033844_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2033883_2034456_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2035880_2036702_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2037020_2038343_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2038702_2039338_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2039297_2040248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2041118_2041991_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2042068_2043208_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2043566_2044823_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2044828_2045356_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2045360_2046179_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2046178_2046901_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2046922_2047237_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2047254_2048403_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2048433_2049309_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2049305_2050625_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2050697_2051894_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2051904_2053392_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2055986_2056886_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057023_2057989_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058087_2059038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2059259_2060210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2060206_2060509_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2060668_2061073_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2061065_2062292_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2062288_2062735_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2062804_2063587_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2063628_2065134_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2065419_2066253_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2067690_2068512_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2068530_2069385_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2069388_2070360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2071044_2071221_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2071706_2072657_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2073794_2074091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2074265_2075618_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2075760_2076777_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2089983	2134306	4109548	transposase	Bacillus_phage(25.0%)	45	NA	NA
WP_010929577.1|2089983_2090934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2091586_2092537_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2092620_2094438_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2094511_2095159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2095171_2096101_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2096270_2096735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2096982_2097663_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2097711_2099403_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2099418_2099970_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2099966_2100338_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2100450_2101287_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2101297_2101822_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2101919_2102099_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2102228_2103203_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2103333_2103690_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2103679_2104555_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2104653_2105538_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2105559_2106855_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2107803_2108454_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2108541_2110062_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2110319_2112185_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2113230_2114181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2114198_2114339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2115153_2115513_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2115500_2116937_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2116933_2117587_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2117583_2118777_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2118880_2120155_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2120151_2121102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268682.1|2121119_2121374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930774.1|2121268_2122243_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2122239_2122383_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2124004_2124667_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2124669_2124846_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2124842_2125781_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2125872_2127363_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2127448_2127601_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2127614_2127854_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2127949_2128693_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930780.1|2128725_2129226_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_170954295.1|2129288_2130248_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_003810400.1|2130244_2131006_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2131021_2132107_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2132306_2133257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2133355_2134306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2144546	2203815	4109548	protease,tRNA,transposase	Klosneuvirus(40.0%)	52	NA	NA
WP_010930787.1|2144546_2145446_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2145464_2146769_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2146734_2147841_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2147928_2148165_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2148303_2149374_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2149377_2150733_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2150759_2151920_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2151922_2152561_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2152562_2153849_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2153907_2155203_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2155209_2155716_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2155712_2156861_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2156888_2157314_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2157636_2160519_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2160611_2161367_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2162132_2163482_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2163580_2164531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2164629_2165580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2165653_2166127_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2166152_2167361_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2167357_2168131_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2168130_2168754_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2168919_2169180_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2169483_2170065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2170131_2170386_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2170372_2172997_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2173068_2173887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2173883_2174489_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2174526_2175660_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2177375_2177750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2177847_2179122_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2179125_2180703_-	lipoprotein	NA	NA	NA	NA	NA
WP_077071153.1|2180699_2181431_-	TcpQ domain-containing protein	NA	NA	NA	NA	NA
WP_010930584.1|2181608_2182964_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2182960_2184595_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2184587_2185418_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2185435_2186380_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2186432_2188007_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2188054_2188414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2188406_2188727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2188842_2189775_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2189877_2190834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2190983_2192321_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2192325_2193582_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2193777_2194824_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2194881_2195250_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2195380_2196253_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2196329_2197232_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2198288_2199506_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2200779_2201730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2201930_2202740_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2202864_2203815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2217008	2281829	4109548	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2217008_2217959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2218529_2218742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2218759_2219491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2219525_2220167_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2220159_2220828_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223040_2223817_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2223838_2224996_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2224992_2225424_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2225420_2226224_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2226237_2226639_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2226705_2227677_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2227742_2228966_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2229193_2230144_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2230267_2232721_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2232909_2234214_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2234318_2234972_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2234974_2236285_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2236481_2237042_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2237153_2237354_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2237699_2238266_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2238349_2238553_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2238859_2239180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2239221_2239503_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2239577_2240834_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2241216_2241546_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2243116_2243938_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2243937_2245077_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245083_2245980_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2245976_2247902_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2248261_2250874_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2250926_2253227_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2253223_2254432_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2254693_2255068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255064_2256015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2256113_2258108_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2258167_2259133_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2259122_2261984_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2261986_2262493_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2262597_2263806_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2263807_2264746_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2264907_2265381_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2265377_2266328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2266438_2266879_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2267007_2268237_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2268275_2269097_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2269150_2270302_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2270393_2270882_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2273432_2275982_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2276052_2278626_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2278891_2279092_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2279123_2279285_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2279342_2279681_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2279829_2280780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2280878_2281829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2352505	2416083	4109548	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2352505_2353456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2353757_2354234_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2354857_2356495_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2356525_2357839_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2357972_2358290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2358390_2359713_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2359709_2360660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2360758_2361709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2362238_2363261_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2363289_2364120_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2364136_2365834_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365898_2366975_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2367134_2367998_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368028_2368598_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2368614_2369466_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2370523_2371405_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2371479_2372469_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2372531_2373482_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2373544_2374402_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2374461_2374950_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2376522_2377713_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377709_2379296_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2379314_2380382_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2380486_2382031_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2382450_2384025_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2384132_2385149_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2385145_2385985_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385989_2387627_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387623_2388574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2388591_2388735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2388716_2389991_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390020_2390311_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2390383_2391397_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2391416_2392679_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392681_2393605_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2393601_2395095_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395105_2396038_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2396219_2397545_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2397579_2398923_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398995_2400516_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400670_2401402_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2401469_2402810_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402825_2403737_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403727_2404321_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2404382_2404769_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404780_2405251_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2405262_2405886_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405906_2408654_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2415132_2416083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2688069	2728738	4109548	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688069_2689020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689130_2689313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689412_2690009_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690192_2691284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691783_2692194_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2692252_2692594_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2692599_2695017_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695029_2696052_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696126_2696486_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696501_2696699_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697034_2697985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698179_2698629_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698625_2699576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699686_2701135_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2701249_2701531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701634_2702585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702829_2703543_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703665_2703893_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704187_2704826_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704934_2705969_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705965_2706916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707331_2707856_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707859_2708129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708327_2709389_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709472_2711107_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711108_2711912_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711940_2712900_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712903_2714418_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714454_2715459_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715890_2716361_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716396_2717008_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717038_2717662_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717742_2719275_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2719309_2720551_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720594_2721626_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721622_2722792_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2722785_2723466_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2723627_2724470_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724632_2725604_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725775_2726654_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726676_2727747_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727787_2728738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2732849	2814984	4109548	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2732849_2733800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2734549_2734984_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2734976_2736212_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2736219_2737014_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2737010_2737814_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2737840_2738818_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2738846_2740418_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2740428_2741250_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2742974_2744405_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2744417_2745107_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2745202_2746543_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2746544_2746802_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2747155_2748748_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2748844_2750305_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2750527_2751139_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2754885_2755836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2756251_2758888_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2758884_2760009_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2760005_2761388_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2761523_2761991_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2762909_2764055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2764056_2765787_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2765904_2766213_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2766225_2767038_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2767918_2769007_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2770209_2770998_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2771037_2772642_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2772722_2773463_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2773470_2773965_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2774337_2775357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2775353_2776736_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2776768_2777629_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2778632_2779514_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2779572_2780010_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2780100_2781072_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2781110_2782055_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2782150_2782960_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2783036_2783411_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2783517_2784210_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2784202_2784619_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784729_2785362_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785390_2785834_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785855_2786947_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2787001_2787802_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787937_2788558_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2788697_2789171_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790310_2791261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791257_2798919_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799159_2803206_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803518_2804100_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804096_2805395_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805474_2806503_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806763_2807714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807710_2808661_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808977_2809583_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809636_2810950_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811024_2811495_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811494_2812283_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812293_2813946_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814033_2814984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2838909	2886617	4109548	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2838909_2839860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839994_2841101_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841111_2842209_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842353_2843559_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843565_2844087_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844083_2844575_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844571_2844823_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844803_2845289_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845424_2848886_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848903_2849788_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849797_2850229_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850475_2850979_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851056_2852457_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852531_2853407_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853403_2854411_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854878_2855184_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855274_2855865_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856055_2857072_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857263_2859600_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859682_2860117_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860215_2861166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861264_2862215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862211_2863006_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863037_2863742_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863816_2864617_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864613_2865021_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865017_2865659_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865651_2867652_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868912_2870244_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870240_2871191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872897_2873164_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873871_2874210_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878762_2879365_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879461_2880751_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880808_2881540_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881536_2882340_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882336_2883425_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883421_2884351_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884499_2885645_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885666_2886617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2894614	2958362	4109548	protease,transposase	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2894614_2896930_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896985_2899154_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899150_2904340_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904429_2904744_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904971_2905217_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905311_2905830_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905929_2907135_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907250_2908648_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908764_2909343_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909415_2910807_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910974_2911925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912205_2912826_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912822_2913236_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913232_2914276_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914331_2914520_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914529_2915294_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915384_2916041_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916132_2916891_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916916_2918518_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918718_2919723_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919823_2920087_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920204_2920981_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921571_2922522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924905_2926018_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926074_2927025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2927042_2927309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2927233_2927455_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2927668_2929075_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2929071_2930376_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2930372_2931560_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2931776_2932229_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2932231_2932696_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2932775_2934455_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2934559_2935537_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2935616_2936585_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2936605_2937979_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2937975_2938812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2938928_2939384_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2939399_2939672_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2939764_2940088_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2940135_2940516_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2940735_2941533_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2941689_2943552_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2943601_2944513_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2944517_2944784_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2944870_2945740_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2945875_2946841_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2947011_2948022_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2948169_2949321_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2950463_2951936_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2951946_2952357_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2952420_2953467_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2953573_2954452_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2954465_2955662_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2955738_2957415_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2957411_2958362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	2967121	3011642	4109548	transposase	Bacillus_virus(20.0%)	43	NA	NA
WP_010930176.1|2967121_2968072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2968146_2969301_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969357_2970308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970406_2970712_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970740_2971175_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971176_2972421_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972417_2973128_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973142_2974054_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974416_2974821_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974817_2975276_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2975282_2976191_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2976187_2977054_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977040_2977868_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977878_2979006_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980083_2981322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981363_2982626_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982632_2983385_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983436_2983622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983897_2984362_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984393_2985053_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985197_2987306_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987302_2988253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988356_2988977_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2989068_2989821_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990955_2992080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992125_2992494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992735_2993686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994721_2995264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995461_2995632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995649_2996600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996596_2997562_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997631_2998468_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998980_3000090_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000151_3001102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3001294_3002077_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3002090_3002840_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3002867_3004214_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3004239_3005169_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3005284_3006190_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3006207_3007407_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3007479_3008172_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3008220_3010647_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3010691_3011642_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	3382097	3502342	4109548	tRNA,transposase	Acinetobacter_phage(20.0%)	100	NA	NA
WP_023995489.1|3382097_3383048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383452_3384097_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384121_3384706_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384806_3385424_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385426_3387142_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387138_3387447_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387463_3388081_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388125_3388428_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388528_3389383_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389570_3389795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389964_3390237_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390654_3391062_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391431_3392226_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392326_3393562_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393630_3394647_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394658_3396035_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396031_3397228_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397224_3398763_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398759_3400019_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401959_3402910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403676_3404771_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404763_3406098_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406051_3406735_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3406760_3407924_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407920_3408922_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408921_3409794_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409790_3410540_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410536_3411328_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411324_3412464_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412739_3413525_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413558_3414341_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414344_3414734_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415873_3416737_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416772_3417861_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417857_3418808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419161_3422140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423066_3423945_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3424909_3425860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3426942_3427893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427889_3428357_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428399_3429170_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3429190_3429991_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430001_3431411_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431505_3432291_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432530_3433547_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433654_3434047_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434184_3434865_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434869_3435841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435936_3436887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3438391_3439093_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439092_3440517_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3441586_3442927_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443042_3444806_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444917_3445796_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445908_3446724_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446727_3446979_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447063_3448080_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448410_3448632_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450992_3451910_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452407_3453616_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453695_3455267_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455384_3456320_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456508_3457453_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458020_3463738_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463743_3464871_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464926_3465553_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3465824_3466841_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466936_3467647_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467643_3468633_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468728_3470360_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470362_3471100_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471255_3472128_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3472396_3473617_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473613_3474273_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474344_3474977_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475006_3475525_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475535_3476645_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476691_3477546_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477547_3478450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479672_3480623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482379_3483369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3483365_3483524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3483544_3484333_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484329_3485361_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485379_3485943_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485998_3487519_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487782_3488487_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3488494_3489232_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489337_3489712_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489754_3491044_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491040_3492210_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492206_3493046_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493105_3494041_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494053_3495004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495102_3496065_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496096_3496456_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496580_3497483_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497484_3499257_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499291_3500068_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501391_3502342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	3517280	3575353	4109548	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517280_3518231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518359_3519493_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519536_3520442_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520444_3522145_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522141_3523062_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523069_3524047_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524105_3525140_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3527114_3527351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3527477_3528341_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528429_3529251_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529330_3530068_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3530064_3531057_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3531170_3531833_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531877_3533026_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3535349_3536300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536640_3537591_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537689_3538640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538936_3539434_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539476_3541252_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541259_3542126_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542132_3542867_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544036_3544831_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545120_3545711_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545744_3547073_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547147_3548293_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548404_3549403_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549365_3549800_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551316_3552201_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552197_3553403_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553399_3554260_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3554372_3556163_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3556203_3556869_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3556869_3557178_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557343_3558630_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3560063_3561014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562965_3564180_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564285_3565275_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565271_3565880_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565892_3566522_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566518_3567139_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567170_3567962_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568813_3569269_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3569287_3570214_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570267_3571554_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572484_3573357_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573353_3574304_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574402_3575353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011739	Bordetella pertussis strain I452 chromosome, complete genome	4109548	4031719	4085151	4109548	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4031719_4032670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032839_4034066_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034265_4035132_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035124_4036087_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036187_4037138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037236_4038187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038285_4039236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039232_4040726_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040722_4043830_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043826_4046895_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046891_4048142_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4048322_4049084_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4049116_4049767_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4049769_4050609_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050849_4051593_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4051675_4052023_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052120_4052963_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053007_4053895_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053921_4054110_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054207_4055665_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055651_4057178_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057196_4057664_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4057663_4058686_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4058806_4059526_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4059601_4060702_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060703_4061894_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062013_4063030_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063348_4064020_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064016_4064925_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065136_4065784_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4069635_4070712_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070722_4071532_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071621_4072395_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4072395_4072560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4072577_4073528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4073416_4074439_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4074428_4075583_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4075622_4077035_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4077159_4078026_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4078027_4078852_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4078848_4079610_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4079690_4080377_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4080550_4081558_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4081554_4082334_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4082391_4083654_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4084200_4085151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
