The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	27282	70036	4110505	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	77634	136108	4110505	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	164894	225405	4110505	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	233337	287974	4110505	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	391907	449416	4110505	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418578_418848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	590421	651612	4110505	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590421_591372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591847_592738_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592734_593556_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593755_594247_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594265_595339_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595385_596489_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596564_597185_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597205_597715_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597769_598021_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598084_599218_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599225_599612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599608_602128_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602556_602895_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602891_603398_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603459_604260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604370_605312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605405_606941_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608620_610471_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610474_611308_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611307_612249_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612500_613472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613613_615902_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616208_617117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617171_618137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618211_619873_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619944_620655_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620621_620786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620803_621754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622452_622836_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622893_623496_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623513_623915_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624030_624942_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624938_625520_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626314_627049_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627089_628139_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628286_628865_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629251_630229_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630322_634717_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634917_635766_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635924_636737_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636792_637743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637841_638642_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638703_639087_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639098_640451_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640738_641068_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641070_641820_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642002_642923_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642969_643182_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643204_643627_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643643_644744_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644840_646358_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646433_647273_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647294_648167_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648257_649352_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649645_650596_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650670_651612_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	656936	703127	4110505	transposase,terminase,tail,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656936_657962_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658002_658242_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658311_659901_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659900_660449_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660529_661102_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661120_662032_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662105_663074_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663196_664270_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664274_666095_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666171_667122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667210_667546_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667679_668330_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668351_669770_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669839_670595_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670563_671322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671332_672214_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672230_672938_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672940_673699_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673908_675651_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675643_676168_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676207_677002_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677169_678243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678341_679292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679543_679750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679821_680433_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680987_681239_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681231_681921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681938_682160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682177_683128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683767_684253_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684239_685517_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685519_686938_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686966_688022_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688027_688270_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688392_688995_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689423_690374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691048_691300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691362_691845_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691858_692047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692046_692442_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692438_692837_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692833_693256_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693263_693764_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694018_694537_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694546_694876_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694893_695184_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695209_697822_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697831_698191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698258_698792_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698788_699178_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699170_703127_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	709293	763223	4110505	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709293_711024_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711076_711505_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711507_712188_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712187_712646_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712682_713657_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713673_714990_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715021_715519_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715605_716295_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716294_717344_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717340_718135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718303_718654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718629_719187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720316_721267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723404_724634_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724636_726079_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726183_727329_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727360_728158_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728182_729742_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729738_732111_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732220_733324_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733323_734016_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734159_734861_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734845_735223_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735954_736905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737064_737937_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738277_738496_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738535_739915_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739956_741354_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741393_743046_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743049_743934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743933_744875_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744953_746573_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746739_747555_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747622_748192_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748192_749143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749797_750895_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750928_752194_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752351_753302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753545_754136_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754151_756596_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756715_757687_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757818_758343_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758302_759253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759474_761670_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761742_762150_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762272_763223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	885812	953788	4110505	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885812_886829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887025_888009_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889607_890996_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891026_892016_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892126_893359_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893640_894441_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894463_896695_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897482_897929_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897950_898697_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898840_899818_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900451_901063_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901056_902274_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902414_903365_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903361_904081_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904201_906361_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906451_906721_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906809_907016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907014_907542_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907560_908340_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908507_909524_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909596_910088_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910098_911814_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912977_913928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913924_915757_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916155_916815_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917342_918023_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918304_919021_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919035_920337_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922481_925370_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925593_926946_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926974_927496_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927492_928947_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928981_929230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929335_930211_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930236_931292_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931304_932096_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932128_933499_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934675_935626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935678_935900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936059_936272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936391_937510_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937606_937822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938015_938267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938379_939330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939326_939710_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939764_941579_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941728_942556_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942601_943582_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943578_943791_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943787_944969_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945132_945867_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945868_948481_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948616_950530_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951145_951556_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951653_952739_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952837_953788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	997317	1069834	4110505	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997317_998268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998372_999422_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999559_1000576_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002084_1002657_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002716_1003448_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003499_1004417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005224_1008404_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008400_1009783_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009852_1010104_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010249_1010864_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011050_1013111_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013240_1014092_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014088_1014715_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014711_1016466_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016758_1019464_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019476_1021138_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021150_1022941_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023162_1024338_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024380_1025331_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025429_1026170_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026364_1028401_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028418_1029429_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029546_1030740_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030769_1031543_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031539_1032730_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032755_1033694_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033690_1036039_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036193_1036835_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038164_1038317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038348_1038897_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038915_1039401_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039578_1040517_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040519_1040837_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040882_1041827_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043507_1044158_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044211_1044547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044543_1045404_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045420_1045702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045775_1046039_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046282_1047233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047531_1048269_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048704_1049028_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049062_1049623_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049743_1050619_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050631_1051579_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051680_1051974_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052000_1054058_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054072_1054573_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054646_1056353_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057216_1058269_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058321_1058711_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058719_1059352_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059451_1060468_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061298_1062306_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062302_1063946_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063942_1064830_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064970_1065444_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065433_1066456_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066452_1067880_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068817_1069834_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1073587	1135663	4110505	transposase,holin,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073587_1074724_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074720_1075794_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075951_1077388_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077478_1078120_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078455_1079472_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081514_1082465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083667_1085089_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085352_1086069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086153_1086471_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086511_1086925_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086926_1087286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087328_1088873_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088956_1089787_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089821_1090976_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091018_1091891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092007_1094296_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095502_1095967_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095993_1096944_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096961_1097099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097311_1098088_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098132_1098990_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099011_1100028_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100162_1101203_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101397_1103479_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103714_1105208_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105438_1106233_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106453_1107812_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107808_1108651_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108669_1110556_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110497_1110749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110793_1111426_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111444_1112047_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112198_1113149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113729_1114437_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114795_1115782_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115921_1116935_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116931_1117882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117899_1118040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117994_1118453_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118489_1119803_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119820_1120192_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120188_1121652_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121792_1122521_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122502_1125352_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125564_1126515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126682_1127507_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127506_1128385_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129289_1130405_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130433_1131228_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131224_1133090_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133168_1133801_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133797_1134100_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134142_1135663_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1153233	1219752	4110505	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153233_1155030_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155029_1155998_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156067_1156913_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156980_1157535_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157581_1158532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158630_1159263_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159427_1161710_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161864_1164561_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164686_1165175_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167585_1170456_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170501_1171716_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171945_1173373_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173470_1174562_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174574_1175333_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175420_1176323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176319_1177270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177399_1178383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178437_1179160_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180638_1181994_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182074_1184450_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184614_1186690_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186751_1187546_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187653_1188616_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188603_1189359_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189466_1191104_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191171_1191909_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192011_1192587_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192759_1193296_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193328_1193643_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193658_1194504_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194542_1195922_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195999_1196881_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196979_1197930_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197926_1198337_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198444_1199299_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199291_1200254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200299_1201424_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201529_1202408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202532_1203312_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203465_1204887_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205321_1207019_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207245_1208187_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208513_1209260_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209267_1210194_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210315_1211233_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211272_1212226_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212250_1212829_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214502_1215111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215188_1215542_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215625_1216615_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216611_1216800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216817_1217768_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217854_1218805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218801_1219752_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1270679	1327890	4110505	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270679_1271630_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275376_1275988_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276210_1277671_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277767_1279360_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279713_1279971_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279972_1281313_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281408_1282098_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282110_1283541_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285265_1286087_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286097_1287669_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287697_1288675_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288701_1289505_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289501_1290296_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290303_1291539_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291552_1291966_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292715_1293666_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294287_1296015_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296126_1297485_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297541_1297760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297777_1298728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298768_1299839_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299861_1300740_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300911_1301883_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302045_1302888_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303049_1303730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303723_1304893_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304889_1305921_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1305988_1307206_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307240_1308773_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308853_1309477_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309507_1310119_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310154_1310625_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311056_1312061_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312097_1313612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313615_1314575_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314603_1315407_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315408_1317043_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317126_1318188_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318386_1318656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318659_1319184_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319599_1320550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320546_1321581_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321689_1322328_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322622_1322850_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322972_1323686_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323930_1324881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325020_1325266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325380_1326829_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326939_1327890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1418123	1470276	4110505	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418123_1419074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419091_1419244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419240_1419594_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419606_1419969_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420010_1420436_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420638_1421895_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422093_1423074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423223_1424465_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424563_1425514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425522_1426218_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429039_1429639_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429649_1431815_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431838_1433623_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433622_1433712_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434406_1434679_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434678_1436745_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437790_1438741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438856_1439189_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439185_1439872_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1439858_1440818_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1440850_1443220_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443219_1443852_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443953_1445294_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445340_1446696_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1446986_1447223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447410_1447728_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448000_1448516_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1448786_1449542_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449880_1450087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450094_1450754_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451048_1453253_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453363_1454587_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454709_1455684_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455751_1456945_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456959_1457760_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457756_1459613_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459609_1460215_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460233_1461619_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462344_1463571_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1463659_1464442_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464540_1465491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465517_1466291_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466302_1467544_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469325_1470276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1514201	1574038	4110505	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1514201_1514690_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514807_1515386_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515491_1515860_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515958_1516909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_145939694.1|1517880_1518096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930419.1|1518640_1519843_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520046_1522707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522719_1526124_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526791_1529017_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529063_1529390_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529440_1530049_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530147_1531098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|1531196_1532147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532216_1532981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532977_1533514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533680_1534532_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534591_1535218_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535214_1536165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536263_1537376_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537365_1538367_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538472_1539984_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539980_1541285_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541396_1541957_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542224_1542779_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543234_1543450_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543704_1546302_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546298_1547486_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548143_1548758_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548846_1549968_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549985_1550891_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551783_1552734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552915_1553668_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553736_1554396_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554392_1555121_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555133_1557413_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557437_1557641_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557682_1558315_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558450_1559368_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559364_1560078_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560315_1561086_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561090_1561690_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1561934_1563425_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563483_1563768_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1564333_1565260_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565396_1566137_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566303_1567680_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567861_1568767_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570418_1572221_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1572338_1572989_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573087_1574038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1582310	1645290	4110505	transposase	Planktothrix_phage(11.11%)	47	NA	NA
WP_005012067.1|1582310_1583261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248220.1|1583359_1584154_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_010930454.1|1584158_1585829_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_010930455.1|1585952_1587002_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811187.1|1587323_1588100_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930456.1|1588164_1589067_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930457.1|1590360_1591164_+	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930458.1|1593857_1594244_+	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_033446218.1|1594259_1596350_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_003811203.1|1596401_1597355_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_010930460.1|1597369_1598257_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930461.1|1598394_1599921_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003811209.1|1600019_1600520_+	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_019247170.1|1600843_1602799_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930464.1|1602966_1605051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|1605077_1605863_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930466.1|1606718_1607489_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014486073.1|1607488_1608229_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930468.1|1608270_1609440_+	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_010930469.1|1609471_1611556_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_003811224.1|1611552_1612443_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930470.1|1612439_1613537_+	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_010930471.1|1613559_1614849_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|1614860_1615886_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930473.1|1615882_1617940_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_023852812.1|1617953_1619129_+	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_005013747.1|1619210_1620161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1620259_1621210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1621268_1622042_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1622034_1623591_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1623587_1624538_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1625864_1626467_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1626706_1627408_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1627401_1628184_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1628368_1629319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1629417_1630155_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1630344_1631103_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1631149_1632139_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1632316_1633285_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1634824_1635793_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1635801_1636743_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1637216_1638227_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1638217_1639732_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1639728_1641075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1641077_1642112_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1642161_1643787_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1644339_1645290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1666081	1727429	4110505	transposase,tRNA	uncultured_Caudovirales_phage(12.5%)	52	NA	NA
WP_005013747.1|1666081_1667032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1667325_1668048_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1668486_1669674_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1669677_1670028_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1671777_1672749_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1672762_1673476_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1673480_1674398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1674504_1674801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1674899_1675850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930509.1|1677008_1679942_+	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_003810969.1|1679941_1680286_+	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_004568496.1|1680282_1681911_+	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_010930510.1|1681907_1682387_+	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_033446177.1|1682386_1682668_+	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930511.1|1682664_1682991_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_005013747.1|1683146_1684097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247780.1|1684140_1684683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930513.1|1684780_1685629_+	hydrolase	NA	NA	NA	NA	NA
WP_010930514.1|1685678_1686128_+|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930515.1|1686124_1687126_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930516.1|1687138_1687933_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930517.1|1687981_1689883_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003810992.1|1689879_1690503_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_003816541.1|1690629_1691754_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930518.1|1692134_1693739_+	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_010930519.1|1693894_1694671_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930520.1|1694755_1695754_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930521.1|1695750_1696524_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_014905945.1|1697508_1698459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1698482_1698947_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1699093_1700302_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1700345_1700783_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1700901_1702191_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1704931_1705882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1705980_1706997_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1707175_1708210_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1708206_1708833_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1708829_1709882_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1709931_1710702_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1710752_1711589_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1711784_1712525_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1712599_1713343_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811719.1|1714004_1714778_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_003811716.1|1715915_1717205_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1718815_1720063_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1720072_1721782_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1721778_1722717_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1722713_1723997_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1724000_1724483_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1724483_1725470_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1725642_1726362_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1726478_1727429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1833617	1892887	4110505	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1833617_1834568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1834692_1835502_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1835702_1836653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1837926_1839144_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1840200_1841103_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1841179_1842052_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1842182_1842551_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1842608_1843655_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1843850_1845107_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1845111_1846449_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1846598_1847555_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1847657_1848590_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1848705_1849026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1849018_1849378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1849425_1851000_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1851052_1851997_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1852014_1852845_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1852837_1854472_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1854468_1855824_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1856730_1858308_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1858311_1859586_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1859683_1860058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1861773_1862907_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1862944_1863550_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1863546_1864365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1864436_1867061_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1867047_1867302_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1867368_1867950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1868253_1868514_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1868679_1869303_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1869302_1870076_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1870072_1871281_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1871306_1871780_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1871853_1872804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1872902_1873853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1873951_1875301_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1876066_1876822_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1876914_1879797_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1880119_1880545_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1880572_1881721_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1881717_1882224_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1882239_1883526_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1883575_1884871_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1884872_1885511_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1885516_1886674_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1886700_1888056_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1888059_1889130_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1889268_1889505_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1889592_1890699_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1890664_1891969_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1891987_1892887_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1903127	1947450	4110505	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1903127_1904078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1904176_1905127_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1905326_1906412_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1906427_1907189_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1907185_1908109_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1908207_1908732_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1908740_1909484_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1909579_1909819_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1909832_1909985_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1910070_1911561_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1911652_1912591_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1912587_1912764_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1912766_1913429_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1915050_1915194_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1915190_1916165_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1916059_1916314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1916331_1917282_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1917278_1918553_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1918656_1919850_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1919846_1920500_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1920496_1921933_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1921920_1922280_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1923094_1923235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1923252_1924203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1925248_1927114_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1927371_1928892_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1928979_1929630_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1930578_1931874_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1931895_1932780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1932878_1933754_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1933743_1934100_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1934230_1935205_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1935334_1935514_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1935611_1936136_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1936146_1936983_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1937095_1937467_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1937463_1938015_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1938030_1939722_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1939770_1940451_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1940698_1941163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1941332_1942262_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1942274_1942922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1942995_1944813_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1944896_1945847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1946499_1947450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	1977223	2041592	4110505	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1977223_1978174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1978395_1979346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1979444_1980410_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1980547_1981447_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1984041_1985529_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1985539_1986736_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1986808_1988128_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1988124_1989000_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1989030_1990179_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1990196_1990511_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1990532_1991255_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1991254_1992073_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1992077_1992605_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1992610_1993867_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1994225_1995365_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1995442_1996315_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1997185_1998136_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1998095_1998731_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1999090_2000413_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2000731_2001553_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2002977_2003550_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2003589_2005419_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2005381_2006440_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2006477_2006939_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2007023_2007770_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2009260_2012491_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2012557_2013889_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2014141_2014516_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2014618_2015797_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2015807_2016398_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2016508_2017315_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2017340_2018135_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2019135_2020110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2020268_2020781_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2020937_2021909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2023653_2024460_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2024456_2025758_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2025708_2026473_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2026586_2027357_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2027441_2028629_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2028701_2029076_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2029176_2030439_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2030435_2031293_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2031465_2032467_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2032918_2033869_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2035432_2036584_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2036952_2037189_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2037252_2037420_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2037533_2039429_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2039592_2040543_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2040641_2041592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	2173121	2222774	4110505	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2173121_2174072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2174170_2176165_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2176224_2177190_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2177179_2180041_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2180043_2180550_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2180654_2181863_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2181864_2182803_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2182964_2183438_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2183434_2184385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2184495_2184936_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2185064_2186294_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2186332_2187154_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2187207_2188359_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2188450_2188939_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2191489_2194039_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2194109_2196683_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2196948_2197149_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2197180_2197342_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2197399_2197738_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2197886_2198837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2199611_2200280_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2200261_2202217_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2202459_2203209_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2203221_2204085_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2204088_2205504_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2205637_2206366_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2206504_2206705_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2206880_2207279_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2207302_2208703_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2208821_2209574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2209862_2210540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2210566_2211346_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2211342_2212227_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2212244_2213024_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2213008_2213767_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2213904_2214540_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2214807_2215824_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2215921_2216962_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2217096_2218389_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2219748_2220132_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2220149_2220737_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2220774_2221725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2221823_2222774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	2479081	2537325	4110505	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2479081_2480032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2480511_2481168_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2481182_2482850_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2482852_2483482_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2483693_2484788_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2484932_2485745_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2485748_2487332_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2487502_2488633_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2488819_2489896_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2489977_2490628_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2490642_2492046_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2492329_2493148_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2493144_2493849_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2494748_2495864_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2495897_2496272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2496294_2497452_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2497464_2497698_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2498332_2501302_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2501316_2501526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2501677_2502307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2502303_2504361_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2504417_2505098_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2505094_2505655_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2505661_2506759_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2506911_2507505_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2507501_2508794_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2508807_2509350_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2509359_2510196_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2510229_2511291_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2511332_2512385_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2512400_2512703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2512844_2513795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2513812_2513977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2513973_2515668_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2515664_2516750_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2516797_2517697_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2517707_2518352_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2519373_2522616_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2522626_2523781_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2524007_2524970_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2525068_2526019_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2526117_2527068_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2527077_2527767_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2527826_2528264_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2528309_2529203_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2529250_2530423_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2530419_2531574_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2531770_2532121_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2532110_2532545_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2532561_2533512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2533659_2534127_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2534107_2535265_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2535330_2536257_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2536374_2537325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	2579603	2646103	4110505	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2579603_2580554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2580923_2581496_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2581498_2582509_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2582501_2583002_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2583012_2583354_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2583422_2584157_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2584173_2584443_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2584465_2585254_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2585300_2586317_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2586533_2587976_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2588154_2589774_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2589894_2591715_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2591793_2593326_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2593359_2595006_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2595075_2596098_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2596115_2597249_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2597251_2597941_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2597940_2598726_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2598769_2599534_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2599572_2600994_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2601059_2601764_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2601811_2602231_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2602243_2602651_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2602834_2603545_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2603671_2603962_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603979_2604462_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2608967_2610122_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2610427_2611444_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2611690_2612479_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2612545_2613226_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2613222_2613993_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2614091_2615042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2615097_2616015_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2616025_2617204_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2617223_2618219_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2619807_2620416_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2620403_2621444_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2621461_2622424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2622420_2623614_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2623610_2624408_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2624433_2625420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2625438_2627478_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2627679_2628360_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2628373_2629285_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2629281_2629860_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629998_2630904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2630911_2634331_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2634318_2636919_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2637874_2638507_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2638900_2639659_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2639655_2640858_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2641045_2641996_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2642903_2644049_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2644035_2644791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2644907_2645087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2645152_2646103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	2674218	2712679	4110505	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2674218_2675169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2675267_2676218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2676316_2677267_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2677359_2677899_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2678005_2678350_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2678407_2679856_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2680043_2680379_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2682006_2683185_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2683267_2683768_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2683877_2684579_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2684590_2685055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2685069_2685345_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2685341_2686118_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2686146_2686974_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2687099_2687570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2687696_2688590_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2688637_2689819_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2689831_2690647_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2690780_2691308_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2691304_2691802_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2691949_2692327_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2692548_2693499_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2693597_2694209_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2694443_2695571_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2695681_2696770_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2696822_2697674_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2697693_2698575_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2698751_2700065_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2700275_2701109_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2701105_2701687_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2702040_2702991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2703006_2704122_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2704224_2705151_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2705150_2706389_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2706385_2707153_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2707153_2707855_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2707936_2708383_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2709272_2709911_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2710679_2711630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2711728_2712679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	2811806	2866323	4110505	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2811806_2812757_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2813085_2813691_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2813744_2815058_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2815132_2815603_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2815602_2816391_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2816401_2818054_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2818141_2819092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2820253_2820760_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2820756_2821521_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2821536_2821821_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2821885_2822875_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2823046_2823976_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2823947_2824634_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2824667_2825213_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2825257_2826523_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2826519_2827422_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2828603_2829548_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2829642_2831160_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2831201_2832830_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2832937_2833819_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2836931_2837306_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2837330_2837669_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2837712_2839347_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2839385_2840732_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2840839_2842261_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2842330_2842915_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2843017_2843968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2844102_2845209_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2845219_2846317_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2846461_2847667_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2847673_2848195_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2848191_2848674_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2848679_2848931_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2848911_2849397_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2849532_2852994_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2853011_2853896_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2853905_2854337_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2854583_2855087_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2855164_2856565_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2856639_2857515_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2857511_2858519_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858986_2859292_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2859382_2859973_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2860163_2861180_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2861371_2863708_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2863790_2864225_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2864323_2865274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2865372_2866323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	2874348	2931134	4110505	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2874348_2875299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2877005_2877272_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2877979_2878318_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2882871_2883474_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2883570_2884860_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2884917_2885649_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2885645_2886449_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2886445_2887534_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2887530_2888460_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2888608_2889754_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2889775_2890726_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2890743_2890902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2891056_2894878_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2895034_2895703_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2895707_2897381_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2897399_2898719_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2898723_2901039_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2901094_2903263_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2903259_2908440_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2908538_2908853_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2909080_2909326_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2909420_2909939_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2910038_2911244_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2911359_2912757_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2912873_2913452_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2913524_2914916_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2915083_2916034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2916314_2916935_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2916931_2917345_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2917341_2918385_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2918440_2918629_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2918638_2919403_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2919493_2920150_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2920241_2921000_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2921025_2922627_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2922827_2923832_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2923932_2924196_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2924313_2925090_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2925680_2926631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2929014_2930127_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2930183_2931134_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	2961519	3005210	4110505	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2961519_2962470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2962487_2962637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2962590_2963487_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2965764_2967990_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2968154_2969243_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2969199_2969853_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2969900_2970698_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2971229_2972180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2972260_2973409_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2973465_2974416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2974514_2974820_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2974848_2975283_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2975284_2976529_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2976525_2977236_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2977250_2978162_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2978524_2978929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2978925_2979384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2979390_2980299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2980295_2981162_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2981148_2981976_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981986_2983114_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2984191_2985430_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2985471_2986734_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2986740_2987493_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2987544_2987730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2988005_2988470_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2988501_2989161_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2989305_2991414_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2991410_2992361_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2992464_2993085_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2993188_2993929_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2995063_2996188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2996233_2996602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996843_2997794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2998829_2999372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2999569_2999740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2999757_3000708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3000704_3001613_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3001739_3002576_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3003088_3004198_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3004259_3005210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	3385154	3438895	4110505	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3385154_3386105_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3386509_3387154_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3387178_3387763_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387863_3388481_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3388483_3390199_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3390195_3390504_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3390520_3391138_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3391182_3391485_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3391585_3392440_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3392627_3392852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3393021_3393294_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3393711_3394119_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3394488_3395283_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3395383_3396619_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3396687_3397704_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3397715_3399092_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3399088_3400285_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3400281_3401820_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401816_3403076_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3405016_3405967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406733_3407828_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407820_3409155_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409108_3409792_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3409817_3410981_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3410977_3411979_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411978_3412851_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412847_3413597_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413593_3414385_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414381_3415521_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415796_3416582_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416615_3417398_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417401_3417791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3418930_3419794_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419829_3420918_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3420914_3421865_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422218_3425197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426123_3427002_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3428950_3429901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429897_3430365_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430407_3431178_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431198_3431999_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432009_3433419_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433513_3434299_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434538_3435555_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435662_3436055_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436192_3436873_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436877_3437849_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3437944_3438895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	3445050	3504350	4110505	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3445050_3446814_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3446925_3447804_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447916_3448732_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448735_3448987_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449071_3450088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450418_3450640_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453000_3453918_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454415_3455624_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455703_3457275_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457392_3458328_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458516_3459461_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460028_3465746_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465751_3466879_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466934_3467561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467832_3468849_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468944_3469655_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469651_3470641_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470736_3472368_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472370_3473108_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473263_3474136_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474485_3475625_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475621_3476281_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476352_3476985_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477014_3477533_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477543_3478653_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478699_3479554_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479555_3480458_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929969.1|3481680_3482631_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484387_3485377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485552_3486341_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486337_3487369_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487387_3487951_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488006_3489527_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489790_3490495_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490502_3491231_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491345_3491720_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491762_3493052_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493048_3494218_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494214_3495054_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495113_3496049_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496061_3497012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497110_3498073_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498104_3498464_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498588_3499491_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499492_3501265_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501299_3502076_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503399_3504350_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	3519288	3577361	4110505	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519288_3520239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520367_3521501_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521544_3522450_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522452_3524153_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524149_3525070_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525077_3526055_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526113_3527148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529122_3529359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3529485_3530349_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530437_3531259_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531338_3532076_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532072_3533065_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533217_3533841_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533885_3535034_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537357_3538308_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538648_3539599_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539697_3540648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3540944_3541442_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541484_3543260_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543267_3544134_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544140_3544875_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546044_3546839_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547128_3547719_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547752_3549081_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549155_3550301_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550412_3551411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551373_3551808_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553324_3554209_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554205_3555411_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555407_3556268_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556380_3558171_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558211_3558856_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558877_3559186_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559351_3560638_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562071_3563022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564973_3566188_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566293_3567283_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567279_3567888_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567900_3568530_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568526_3569147_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569178_3569970_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570821_3571277_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571295_3572222_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572275_3573562_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574492_3575365_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575361_3576312_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576410_3577361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011737	Bordetella pertussis strain I382 chromosome, complete genome	4110505	4009573	4074485	4110505	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009573_4010059_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010147_4010285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010277_4011258_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011524_4012334_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012373_4013054_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013047_4013506_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013517_4013880_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013962_4014646_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014701_4015010_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015028_4015343_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015339_4017814_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017821_4019213_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019209_4019395_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019373_4020075_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020071_4020893_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020873_4021998_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021990_4023010_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023215_4024106_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024350_4025142_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025224_4025599_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025576_4026986_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026978_4028361_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028695_4030300_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030377_4031349_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031359_4032286_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032676_4033627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033796_4035023_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035222_4036089_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036081_4037044_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037144_4038095_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038193_4039144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039242_4040193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040189_4041683_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041679_4044787_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044783_4047852_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047848_4049099_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049279_4050032_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050073_4050718_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050726_4051707_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051806_4052550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052632_4052980_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053077_4053920_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053964_4054852_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054878_4055067_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055164_4056622_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056608_4058135_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058153_4058621_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058620_4059643_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059763_4060504_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060558_4061659_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061660_4062851_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062970_4063987_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064305_4064977_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064973_4065882_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066093_4066741_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070601_4071669_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071679_4072489_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4072578_4073352_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073352_4073517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073534_4074485_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
