The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	0	59497	4091930	tRNA,transposase	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|58546_59497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	70134	123116	4091930	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115987_117004_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117079_117880_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117876_118752_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118762_120055_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120097_121138_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121243_122065_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122165_123116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	165936	226447	4091930	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165936_166887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168330_169233_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169210_169840_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170122_171553_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171586_172216_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172264_173872_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173896_174580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174661_175138_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175344_176295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177410_177938_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178029_178845_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178905_179640_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179677_181756_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182005_182278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182379_183465_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183468_185373_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185369_189044_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189104_189668_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189675_190098_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190125_190545_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190573_191020_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191146_191644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191798_194069_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194144_195350_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195448_196399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196501_197137_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197133_198027_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198421_199522_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199603_199978_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200037_202902_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203046_203787_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203856_205068_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205096_206065_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206678_207629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207785_208109_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208213_209254_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209259_210039_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210084_210381_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210406_210682_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210738_211383_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211382_212069_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212267_213050_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213100_213826_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213857_215207_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215318_216251_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|216708_219504_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220097_222941_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223111_223831_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223869_224418_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224572_225472_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225496_226447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	234379	287969	4091930	protease,tRNA,transposase	Bacillus_phage(25.0%)	46	NA	NA
WP_005012067.1|234379_235330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235416_236367_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236363_237314_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237412_238210_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239159_239570_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240591_241335_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241378_242422_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242592_244695_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246105_247062_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247080_247572_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247568_248924_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248924_249623_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249619_250321_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250573_251623_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251728_252670_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252666_254556_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254642_255281_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255423_256809_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256739_257276_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257427_258819_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258835_259816_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259951_260935_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|260999_261899_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262005_263760_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263767_264892_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264905_265886_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|266616_267954_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268127_268673_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268798_270376_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270391_271546_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271559_271685_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271681_273433_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273429_275109_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275171_275720_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276862_277141_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278184_279135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279413_279575_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280241_280691_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280700_281312_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281470_282319_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282344_283727_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283791_284433_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284572_285031_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285055_285832_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285885_287022_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287018_287969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	355963	415431	4091930	tRNA,transposase	Streptococcus_phage(50.0%)	56	NA	NA
WP_005012067.1|355963_356914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|357025_357748_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|357846_358590_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|358820_360329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|360448_361180_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|361224_362685_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|362709_363189_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|363207_364218_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|364432_365173_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997839.1|365379_366390_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|366349_367300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|368348_368987_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929767.1|369023_370367_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|370789_371578_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_010929769.1|371715_372390_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|372503_373958_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|373960_375499_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|375501_375810_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|376040_377084_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|377172_378057_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|378043_378607_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|378620_380573_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|380569_381706_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|381731_382787_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|382797_384291_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|384503_385079_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|385128_385875_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|385874_386777_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|387038_387827_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|387967_388459_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|388455_389199_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|389195_389789_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|389797_390274_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|390398_391337_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|391333_391906_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|391902_392853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392989_393907_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393903_394152_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394148_395354_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395426_396422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396444_397665_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397661_398306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400036_400846_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401150_402104_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_023852714.1|402202_403153_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486049.1|403251_404235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|404161_404863_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|404911_405682_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|405678_406857_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|407024_408731_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|408727_409624_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|409664_411254_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|411303_412296_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|412364_412964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|413424_414405_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|414480_415431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	423242	486392	4091930	tRNA,transposase	Bradyrhizobium_phage(20.0%)	51	NA	NA
WP_022997984.1|423242_424220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|424415_425621_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|425617_427129_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|427144_428458_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|428648_428828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|429237_429972_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|432416_433367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815668.1|433363_433771_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247835.1|433767_434436_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003815671.1|435054_436026_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815672.1|436132_437095_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929934.1|437213_438935_+	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_010929935.1|438978_440109_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929936.1|440122_441313_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929937.1|441493_442513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929938.1|442645_443818_-	acetylornithine deacetylase	NA	NA	NA	NA	NA
WP_003815682.1|443810_444485_-	DUF1028 domain-containing protein	NA	NA	NA	NA	NA
WP_010929939.1|444495_444924_-	RidA family protein	NA	NA	NA	NA	NA
WP_003815690.1|444954_446229_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929940.1|446593_447577_+	oxidoreductase	NA	NA	NA	NA	NA
WP_010929941.1|447660_448605_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929942.1|448752_450894_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929943.1|450893_451673_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815697.1|452071_452965_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929944.1|453028_454048_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929945.1|454104_455085_+	NAD(P)-dependent oxidoreductase	NA	M1IDV7	Acanthocystis_turfacea_Chlorella_virus	29.5	7.6e-11
WP_010929946.1|455282_457115_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	48.1	4.3e-156
WP_010929947.1|457264_457753_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929948.1|457774_458959_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929949.1|458988_461106_-	crotonase	NA	NA	NA	NA	NA
WP_010929950.1|461363_463166_+	DNA alkylation response protein	NA	NA	NA	NA	NA
WP_010929951.1|463247_464234_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929952.1|464285_466475_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010929953.1|466471_467269_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929954.1|467265_468102_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929955.1|468121_470497_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|470595_471546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|471644_472595_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|472693_473644_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|474366_475641_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|475727_476810_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|476820_477633_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|477669_477996_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|478000_478561_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|478801_479794_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|479812_480808_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|480823_482200_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|482192_484574_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|484590_484980_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|485106_485337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|485441_486392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	499780	559403	4091930	tRNA,transposase	Vibrio_phage(25.0%)	49	NA	NA
WP_010929969.1|499780_500731_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|502164_503451_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|503616_503925_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|503946_504591_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|504631_506422_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|506534_507395_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|507391_508597_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|508593_509478_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|510994_511429_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|511391_512390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|512501_513647_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|513721_515050_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|515083_515674_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|515963_516758_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|517927_518662_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|518668_519535_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|519542_521318_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|521360_521858_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|522154_523105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|523203_524154_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|524494_525445_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|527768_528917_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|528961_529585_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|529737_530730_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|530726_531464_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|531543_532365_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|532453_533317_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|533443_533680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|535654_536689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|536747_537725_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|537732_538653_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|538649_540350_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|540352_541258_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|541301_542435_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|542563_543514_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|543612_545682_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|545724_547827_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|548133_549210_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|549285_550170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|550352_550775_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|550784_552185_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|552227_553133_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|553231_554773_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|554807_555347_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|555359_555830_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|555967_556210_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|556326_557208_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|557280_557601_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|558452_559403_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	564729	633852	4091930	tRNA,transposase	Acinetobacter_phage(25.0%)	56	NA	NA
WP_010931381.1|564729_565692_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|565790_566741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|566753_567689_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|567748_568588_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|568584_569754_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|569750_571040_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|571082_571457_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|571571_572300_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|572307_573012_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|573275_574796_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|574851_575415_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|575433_576465_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|576461_577250_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|577425_578415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|580171_581122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|582344_583247_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|583248_584103_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|584149_585259_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|585269_585788_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|585817_586450_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|586521_587181_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|587177_588317_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|588666_589539_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|589694_590432_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|590434_592066_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|592161_593151_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|593147_593858_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|593953_594970_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|595241_595868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|595923_597051_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|597056_602774_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|603341_604286_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|604474_605410_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|605527_607099_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|607178_608387_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|608884_609802_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|612162_612384_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|612714_613731_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|613815_614067_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|614070_614886_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|614998_615877_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|615988_617752_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|617867_619208_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|620277_621702_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|621701_622403_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|623907_624858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|624953_625925_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|625929_626610_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|626747_627140_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|627247_628264_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|628503_629289_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|629383_630793_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|630803_631604_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|631624_632395_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|632437_632905_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|632901_633852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	676697	754006	4091930	protease,tRNA,integrase,transposase	Bacillus_phage(20.0%)	58	723834:723852	743722:743740
WP_023995489.1|676697_677648_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|677746_679222_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|680809_681697_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|681699_682641_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|682686_684252_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|686029_687355_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|687537_688995_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|688958_689456_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|689486_690458_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|690510_690942_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|691071_691740_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|692468_693572_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|693677_694952_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|694963_695989_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|695990_697361_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|697361_698498_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|698544_700470_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|700466_701588_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|701584_702739_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|702735_703866_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|703873_705439_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|705445_706828_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|707106_707718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|707809_709225_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|709242_709953_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|709949_711272_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|711351_713313_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|713438_714752_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|714860_716159_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|716341_717250_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|717259_717469_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|717480_719160_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|719261_720215_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|720305_721133_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|721131_723018_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|723014_723614_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|723662_724562_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
723834:723852	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|724770_725721_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|725843_726458_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|726586_727183_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|727179_727962_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|728034_729126_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|729405_730533_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|730874_731921_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|732431_735188_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|735189_738141_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|738156_739368_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|739364_739565_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|739551_740502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|740518_741013_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|741016_741274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|741817_742729_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|742810_743095_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|743878_744829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
743722:743740	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|745247_747812_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|747856_749710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|750042_751614_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|753055_754006_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	999940	1102333	4091930	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|999940_1001056_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1001156_1001975_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1002072_1002684_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1002843_1004220_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1004282_1004741_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1004825_1005521_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1005582_1005864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1006426_1007179_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1007223_1008300_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1008296_1009247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1009349_1010012_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1010106_1010277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1010629_1011631_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1011633_1012830_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1012850_1013654_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1013734_1014031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1014061_1014625_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1014665_1015523_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1015530_1016280_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1016301_1017174_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1017202_1017982_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1018015_1018813_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1021467_1021860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1021853_1022714_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1022717_1023680_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1024456_1025146_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1026006_1026957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1027306_1028176_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1028246_1028942_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1028931_1029441_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1029437_1030658_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1030605_1031508_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1032394_1033681_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1033719_1035093_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1035131_1035833_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1036131_1037121_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1037221_1037683_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1037698_1038247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1038388_1039864_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1039969_1041061_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1041064_1041847_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1041856_1042645_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1043770_1044205_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1044201_1045212_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1045255_1046182_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1046468_1046837_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1047053_1048004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1048048_1050475_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1050523_1051216_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1051288_1052488_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1052505_1053411_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1053526_1054456_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1054481_1055828_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1055840_1056605_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1056618_1057401_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1057593_1058544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1058605_1059715_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1060227_1061064_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1061190_1062099_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1062095_1063046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1063431_1063974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1065009_1065960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1066201_1066570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1066615_1067740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1068874_1069615_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1069718_1070339_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1070442_1071393_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1071389_1073498_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1073642_1074302_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1074333_1074798_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1075073_1075259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1075310_1076063_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1076069_1077332_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1077373_1078612_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1079689_1080817_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1080827_1081655_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1081641_1082508_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1083874_1084279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1084370_1085321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1085690_1086602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1086616_1087327_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1087323_1088568_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1088569_1089004_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1089032_1089338_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1089436_1090387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1090443_1091592_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1091672_1092623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1093154_1093952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1093999_1094653_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1094609_1095698_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1095862_1098088_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1100365_1101262_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1101382_1102333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	1132719	1204739	4091930	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1132719_1133670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1133726_1134839_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1137222_1138173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1138763_1139540_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1139657_1139921_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1140021_1141026_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1141226_1142828_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1142853_1143612_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1143703_1144360_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1144450_1145215_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1145224_1145413_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1145468_1146512_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1146508_1146922_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1146918_1147539_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1147819_1148770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1148937_1150329_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1150401_1150980_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1151096_1152494_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1152609_1153815_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1153914_1154433_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1154527_1154773_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1155000_1155315_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1155413_1160594_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1160590_1162759_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1162814_1165130_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1165134_1166454_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1166472_1168146_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1168150_1168819_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1168975_1172797_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1173127_1174078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1174099_1175245_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1175393_1176323_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1176319_1177408_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1177404_1178208_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1178204_1178936_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1178993_1180283_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1180379_1180982_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1185535_1185874_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1186581_1186848_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005013747.1|1188554_1189505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1189603_1190554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1190550_1191882_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1193142_1195143_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1195135_1195777_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1195773_1196181_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1196177_1196978_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1197052_1197757_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1197788_1198583_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1198579_1199530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1199628_1200579_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1200677_1201112_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1201194_1203531_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1203722_1204739_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	1252133	1333008	4091930	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1252133_1253084_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1253080_1254031_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1254291_1255320_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1255399_1256698_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1256694_1257276_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1257588_1261635_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1261875_1269537_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1269533_1270484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1271623_1272097_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1272236_1272857_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1272992_1273793_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1273847_1274939_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1274960_1275404_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1275432_1276065_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1276175_1276592_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1276584_1277277_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1277383_1277758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1277834_1278644_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1278739_1279684_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1279722_1280694_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1280784_1281222_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1281280_1282162_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1283165_1284026_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1284058_1285441_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1285437_1286457_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1286829_1287324_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1287331_1288072_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1288152_1289757_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1289796_1290585_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1290710_1292876_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1293756_1294569_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1294581_1294890_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1295007_1296738_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1296739_1297942_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1298014_1298683_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1298804_1299272_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1299407_1300790_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1300786_1301911_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1301907_1304544_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1304959_1305910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1309656_1310268_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1310490_1311951_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1312047_1313640_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1313993_1314251_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1314252_1315593_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1315688_1316378_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1316390_1317821_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1319545_1320367_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1320377_1321949_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1321977_1322955_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1322981_1323785_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1323781_1324576_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1324583_1325819_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1325832_1326246_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1326995_1327946_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1328567_1330295_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1330406_1331765_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|1332057_1333008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	1430581	1482734	4091930	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1430581_1431532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1431698_1432052_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1432064_1432427_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1432468_1432894_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_057110980.1|1433096_1434353_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1434551_1435532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1435681_1436923_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1437021_1437972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1437980_1438676_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1441497_1442097_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1442107_1444273_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1444296_1446081_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1446080_1446170_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1446864_1447137_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1447136_1449203_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1449199_1450150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1450248_1451199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1451314_1451647_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1451643_1452330_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1452316_1453276_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1453308_1455678_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1455677_1456310_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1456411_1457752_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1457798_1459154_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1459444_1459681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1459868_1460186_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1460458_1460974_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1461244_1462000_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1462338_1462545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1462552_1463212_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1463506_1465711_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1465821_1467045_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1467167_1468142_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1468209_1469403_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1469417_1470218_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1470214_1472071_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1472067_1472673_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1472691_1474077_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1474802_1476029_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1476117_1476900_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_010929591.1|1476998_1477949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1477975_1478749_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1478760_1480002_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1481783_1482734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	1526659	1594745	4091930	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1526659_1527148_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1527265_1527844_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1527949_1528318_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1528416_1529367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1529373_1530486_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1531172_1532375_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1532578_1535239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1535251_1538656_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1539323_1541549_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1541595_1541922_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1541972_1542581_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1542679_1543630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1543699_1544464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1544460_1544997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1545163_1546015_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1546074_1546701_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1546697_1547648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1547746_1548859_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1548848_1549850_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1549955_1551467_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1551463_1552768_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1552879_1553440_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1553707_1554262_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1554717_1554933_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1555187_1557785_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1557781_1558969_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1559627_1560242_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1560330_1561452_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1561469_1562375_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1563267_1564218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1564399_1565152_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1565220_1565880_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1565876_1566605_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1566617_1568897_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1568921_1569125_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1569166_1569799_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1569934_1570852_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1570848_1571562_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1571799_1572570_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1572574_1573174_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1573418_1574909_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1574967_1575252_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1575817_1576744_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1576880_1577621_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1577787_1579164_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1579345_1580251_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1581902_1583705_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1583822_1584473_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1584571_1585522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1585543_1586764_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1586949_1588362_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1588425_1589493_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1589492_1590980_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1590989_1591934_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1592093_1592792_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1592869_1593775_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1593794_1594745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	1630694	1686285	4091930	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1630694_1631645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1631703_1632477_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1632469_1634026_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1634022_1634973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1636299_1636902_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1637141_1637843_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1637836_1638619_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1638803_1639754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1639852_1640590_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1640779_1641538_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1641584_1642574_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1642751_1643720_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1645259_1646228_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1646236_1647178_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1647651_1648662_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1648652_1650167_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1650163_1651510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1651512_1652547_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1652596_1654222_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1654774_1655725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1655829_1656777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1656830_1658645_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1658637_1659312_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1659441_1662516_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1662529_1662829_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1663143_1663767_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1664010_1664880_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1664857_1665802_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1665887_1666814_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1666926_1667706_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1667696_1668893_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1668923_1669874_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1670095_1670785_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1670849_1671605_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1671656_1672649_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1672658_1673612_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1673727_1674690_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1676091_1676520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1676516_1677467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1677760_1678483_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1678921_1680109_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1680112_1680463_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1682212_1683184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1683197_1683911_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1683915_1684833_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1684939_1685236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1685334_1686285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	1899164	1968389	4091930	protease,transposase	Klebsiella_phage(11.11%)	53	NA	NA
WP_005012808.1|1899164_1900115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853556.1|1900101_1900332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926318.1|1900476_1901388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1901613_1903131_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1904362_1905325_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1905413_1905662_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_010930866.1|1912240_1914988_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1915008_1915632_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1915643_1916114_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1916125_1916512_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1916573_1917167_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1917157_1918069_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_023853662.1|1918084_1919395_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1919492_1920224_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1920378_1921899_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930859.1|1921959_1923315_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1923349_1924675_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1924856_1925789_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1925799_1927293_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1927289_1928213_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1928215_1929478_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1929497_1930511_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1930583_1930874_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1930903_1932178_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_005013747.1|1932320_1933271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1933267_1934905_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1934909_1935749_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023997180.1|1935745_1936753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1936869_1938444_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1938863_1940408_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1940512_1941580_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1941598_1943185_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1943181_1944372_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1945944_1946433_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1946492_1947350_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1947412_1948363_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1948425_1949415_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1949489_1950371_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1951428_1952280_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1952296_1952866_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1952896_1953760_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1953919_1954996_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1955060_1956758_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1956774_1957605_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1957633_1958656_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1959185_1960136_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1960132_1961455_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1961555_1961873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1962006_1963320_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1963350_1964988_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1965611_1966088_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_005013747.1|1966389_1967340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1967438_1968389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	2007502	2055517	4091930	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|2007502_2008453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2008551_2011152_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2011258_2012263_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2012371_2013712_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2013752_2014781_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2014976_2015522_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2015518_2016079_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2016177_2017128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2017165_2017753_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2017770_2018154_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2019513_2020806_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2020940_2021981_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2022078_2023095_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|2023362_2023998_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2024135_2024894_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2024878_2025658_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2025675_2026560_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2026556_2027336_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|2027362_2028040_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2028328_2029081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2029199_2030600_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2030623_2031022_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2031197_2031398_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2031536_2032265_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2032398_2033814_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2033817_2034681_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2034693_2035443_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|2035685_2037641_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|2037622_2038291_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2039065_2040016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2040114_2041065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2041213_2041552_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2041609_2041771_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2041802_2042003_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2042268_2044842_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2044912_2047462_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2050012_2050501_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2050592_2051744_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2051797_2052619_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2052657_2053887_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2054015_2054456_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2054566_2055517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	2117079	2176349	4091930	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2117079_2118030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2118154_2118964_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|2119164_2120115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2121388_2122606_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2123662_2124565_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2124641_2125514_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2125644_2126013_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2126070_2127117_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2127312_2128569_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2128573_2129911_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2130060_2131017_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2131119_2132052_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2132167_2132488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2132480_2132840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2132887_2134462_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2134514_2135459_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2135476_2136307_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2136299_2137934_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2137930_2139286_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2140192_2141770_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2141773_2143048_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2143145_2143520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2145235_2146369_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2146406_2147012_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2147008_2147827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2147898_2150523_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2150509_2150764_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2150830_2151412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2151715_2151976_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2152141_2152765_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2152764_2153538_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2153534_2154743_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2154768_2155242_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2155315_2156266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2156364_2157315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2157413_2158763_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2159528_2160284_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2160376_2163259_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2163581_2164007_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2164034_2165183_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2165179_2165686_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|2165701_2166988_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|2167037_2168333_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2168334_2168973_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_057110966.1|2168978_2170136_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2170162_2171518_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2171521_2172592_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2172730_2172967_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2173054_2174161_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2174126_2175431_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2175449_2176349_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 21
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	2473726	2539610	4091930	protease,tRNA,transposase	Planktothrix_phage(22.22%)	60	NA	NA
WP_004566381.1|2473726_2475214_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2475251_2476310_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2476309_2476810_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2476822_2477422_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2477418_2477919_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2477920_2479150_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2479339_2479579_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2479761_2480514_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2480515_2481451_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2481532_2482519_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2482518_2483577_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2483633_2483816_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2483867_2484461_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2484569_2485169_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2485165_2485876_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2485877_2486705_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2488521_2489763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2489774_2490548_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2490574_2491525_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2492004_2492661_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2492675_2494343_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2494345_2494975_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2495186_2496281_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2496425_2497238_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2497241_2498825_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2498995_2500126_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2500312_2501389_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2501470_2502121_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2502135_2503539_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2503822_2504641_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2504637_2505342_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2506241_2507357_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2507390_2507765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2507787_2508945_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2508957_2509191_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2509825_2512795_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2512809_2513019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2513170_2513800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2513796_2515854_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2515910_2516591_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2516587_2517148_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2517154_2518252_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2518404_2518998_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2518994_2520287_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2520300_2520843_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2520852_2521689_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2521722_2522784_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2522825_2523878_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2523893_2524196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2524337_2525288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2525466_2527161_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2527157_2528243_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2528290_2529190_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2529200_2529845_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2530866_2534109_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2534119_2535274_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2535500_2536463_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2536561_2537512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2537610_2538561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2538659_2539610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	2592147	2658647	4091930	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2592147_2593098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2593467_2594040_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2594042_2595053_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2595045_2595546_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2595556_2595898_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2595966_2596701_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2596717_2596987_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2597009_2597798_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2597844_2598861_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2599077_2600520_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2600698_2602318_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2602438_2604259_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2604337_2605870_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2605903_2607550_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2607619_2608642_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2608659_2609793_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2609795_2610485_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2610484_2611270_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2611313_2612078_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2612116_2613538_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2613603_2614308_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2614355_2614775_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2614787_2615195_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2615378_2616089_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2616215_2616506_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2616523_2617006_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2621511_2622666_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|2622971_2623988_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2624234_2625023_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2625089_2625770_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2625766_2626537_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2626635_2627586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2627641_2628559_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2628569_2629748_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2629767_2630763_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2632351_2632960_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2632947_2633988_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2634005_2634968_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2634964_2636158_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2636154_2636952_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2636977_2637964_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2637982_2640022_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2640223_2640904_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2640917_2641829_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2641825_2642404_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2642542_2643448_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2643455_2646875_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2646862_2649463_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2650418_2651051_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2651444_2652203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2652199_2653402_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2653589_2654540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2655447_2656593_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2656579_2657335_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2657451_2657631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2657696_2658647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	2821212	2886796	4091930	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2821212_2822163_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2822261_2823212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2823414_2824404_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2824487_2824841_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2824918_2825527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2827200_2827779_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2827803_2828757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2828796_2829714_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2829835_2830762_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2830769_2831516_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2831842_2832784_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2833010_2834708_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2835142_2836564_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2836717_2837497_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2837621_2838500_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2838605_2839730_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2839775_2840738_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2840730_2841585_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2841692_2842103_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2842099_2843050_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2843148_2844030_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2844107_2845487_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2845525_2846371_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2846386_2846701_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2846733_2847270_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2847442_2848018_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2848120_2848858_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2848925_2850563_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2850670_2851426_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2851413_2852376_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2852483_2853278_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2853339_2855415_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2855579_2857955_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2858035_2859391_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2860869_2861592_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2861646_2862630_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2862759_2863710_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2863706_2864609_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2864696_2865455_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2865467_2866559_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2866656_2868084_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2868313_2869528_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2869573_2872444_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2874854_2875343_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_077083465.1|2875468_2878165_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2878319_2880602_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2880766_2881399_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2881497_2882448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2882494_2883049_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2883116_2883962_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2884031_2885000_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2884999_2886796_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	2904366	2965393	4091930	tRNA,holin,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2904366_2905887_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2905929_2906232_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2906228_2906861_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2906939_2908805_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2908801_2909596_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2909624_2910740_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2911644_2912523_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2912522_2913347_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2913514_2914465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2914677_2917527_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2917508_2918237_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2918377_2919841_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2919837_2920209_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2920226_2921540_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2921576_2922035_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2922147_2923098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2923094_2924108_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2924247_2925234_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2925592_2926300_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2926880_2927831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2927982_2928585_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2928603_2929236_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2929280_2929532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2929473_2931360_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2931378_2932221_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2932217_2933576_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2933796_2934591_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2934821_2936315_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2936550_2938632_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2938826_2939867_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2940001_2941018_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2941039_2941897_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2941941_2942718_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2943085_2944036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2944062_2944527_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2945733_2948022_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2948138_2949011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2949053_2950208_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2950242_2951073_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2951156_2952701_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2952743_2953103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2953104_2953518_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2953558_2953876_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2953960_2954677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2954940_2956362_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2956428_2959176_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2959508_2960525_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2960860_2961502_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2961592_2963029_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2963186_2964260_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2964256_2965393_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 25
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	2969146	3041663	4091930	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2969146_2970163_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2971100_2972528_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2972524_2973547_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2973536_2974010_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2974150_2975038_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2975034_2976678_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2976674_2977682_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2978512_2979529_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2979628_2980261_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2980269_2980659_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2980711_2981764_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2982627_2984334_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2984407_2984908_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2984922_2986980_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|2987006_2987300_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|2987401_2988349_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|2988361_2989237_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|2989357_2989918_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|2989952_2990276_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|2990711_2991449_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|2991747_2992698_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|2992941_2993205_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|2993278_2993560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|2993576_2994437_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|2994433_2994769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|2994822_2995473_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|2997153_2998098_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|2998143_2998461_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|2998463_2999402_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|2999579_3000065_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3000083_3000632_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3000663_3000816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3002145_3002787_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3002941_3005290_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3005286_3006225_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3006250_3007441_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3007437_3008211_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3008240_3009434_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3009551_3010562_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3010579_3012616_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3012810_3013551_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3013649_3014600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3014642_3015818_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3016039_3017830_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3017842_3019504_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3019516_3022222_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3022514_3024269_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3024265_3024892_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3024888_3025740_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3025869_3027930_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3028116_3028731_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3028876_3029128_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3029197_3030580_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3030576_3033756_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3034563_3035481_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3035532_3036264_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3036323_3036896_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3038404_3039421_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3039558_3040608_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3040712_3041663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	3061063	3126003	4091930	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3061063_3062014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3062112_3062697_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3062731_3063721_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3063717_3064659_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3064655_3065876_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3065918_3066233_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3066424_3066784_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3066785_3068501_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3068688_3069360_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3069374_3070703_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3070699_3071599_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3071685_3072771_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3072763_3073894_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3073896_3076578_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3076948_3077530_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3077655_3078381_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3078377_3079055_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3079270_3080452_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3081224_3081407_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3081436_3082387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3082516_3082909_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3083185_3084097_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3084221_3085196_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3085192_3086143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3086241_3087327_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3087424_3087835_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3088450_3090364_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3090499_3093112_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3093113_3093848_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3094011_3095193_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3095189_3095402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3095398_3096379_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3096424_3097252_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3097401_3099216_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3099270_3099654_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3099650_3100601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3100713_3100965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3101158_3101374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3101470_3102589_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3102708_3102921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3103080_3103302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3103354_3104305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3105481_3106852_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3106884_3107676_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3107688_3108744_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3108769_3109645_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3109750_3109999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3110033_3111488_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3111484_3112006_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3112034_3113387_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3113610_3116499_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3118643_3119945_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3119959_3120676_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3120957_3121638_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3122165_3122825_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3123223_3125056_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3125052_3126003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	3217626	3332834	4091930	tRNA,transposase	Planktothrix_phage(30.0%)	95	NA	NA
WP_005012067.1|3217626_3218577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|3218675_3219626_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3219622_3220642_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3220651_3223360_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3223507_3224164_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3224262_3225213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3225360_3226254_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3226453_3228148_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3228182_3229109_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3229177_3230275_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3230293_3231157_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3231168_3231951_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3231947_3233066_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3233062_3234595_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3234635_3235643_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3235787_3236510_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3236525_3237548_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3237864_3238599_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3238683_3240429_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3240425_3241178_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3241222_3242179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3242267_3242834_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3242841_3243702_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3243731_3244460_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3244491_3245175_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3246012_3246927_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3246991_3247900_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3247990_3249415_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3249416_3250739_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3250735_3252874_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3252951_3258072_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3258172_3258481_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3258550_3259108_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3259123_3260605_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3260659_3262513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3262775_3264113_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3264147_3266145_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3266162_3268211_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3268341_3269208_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3269476_3270442_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3270556_3271705_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3272129_3272441_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3272474_3272735_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3272884_3274018_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3274088_3275225_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3275390_3276185_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3276247_3276691_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3276806_3277757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3277879_3278287_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3278359_3280555_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3280776_3281727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3281825_3282776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3282735_3283260_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3283391_3284363_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3284482_3286927_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3286942_3287533_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3287776_3288727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3288884_3290150_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3290183_3291281_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3291935_3292886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3292886_3293456_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3293523_3294339_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3294505_3296125_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3296203_3297145_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3297144_3298029_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3298032_3299685_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3299724_3301122_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3301163_3302543_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3302582_3302801_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3303141_3304014_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3304173_3305124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3305222_3306173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3306904_3307282_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3307266_3307968_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3308111_3308804_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3308803_3309907_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3310016_3312389_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3312385_3313945_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3313969_3314767_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3314798_3315944_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3316048_3317491_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3317493_3318723_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3320860_3321811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3322940_3323498_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3323473_3323824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3323992_3324787_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3324783_3325833_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3325832_3326522_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3326608_3327106_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3327137_3328454_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3328470_3329445_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3329481_3329940_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3329939_3330620_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3330622_3331051_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3331103_3332834_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 28
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	3339000	3397287	4091930	tail,protease,tRNA,terminase,transposase	uncultured_Caudovirales_phage(17.39%)	61	NA	NA
WP_010931429.1|3339000_3342957_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3342949_3343339_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3343335_3343869_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3343936_3344296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3344305_3346918_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3346943_3347234_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3347251_3347581_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3347590_3348109_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3348363_3348864_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3348871_3349294_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3349290_3349689_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3349685_3350081_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3350080_3350269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3350282_3350765_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3350827_3351079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3351753_3352704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3353132_3353735_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3353857_3354100_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3354105_3355161_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3355189_3356608_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3356610_3357888_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3357874_3358360_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3358999_3359950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3360206_3360896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3360888_3361140_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3361694_3362306_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3362377_3362584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3362835_3363786_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3363884_3364958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3365125_3365920_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3365959_3366484_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3366476_3368219_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3368428_3369187_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3369189_3369897_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3369913_3370795_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3370805_3371564_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3371532_3372288_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3372357_3373776_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3373797_3374448_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3374581_3374917_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3375005_3375956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3376032_3377853_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3377857_3378931_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3379053_3380022_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3380095_3381007_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3381025_3381598_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3381678_3382227_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3382226_3383816_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3383885_3384125_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3384165_3385191_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3385256_3386438_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3386534_3386987_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3386996_3388337_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3388653_3389691_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3390072_3390432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3390515_3391457_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3391531_3392482_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3392775_3393870_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3393960_3394833_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3394854_3395694_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3395769_3397287_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 30
NZ_CP011736	Bordetella pertussis strain I380 chromosome, complete genome	4091930	3990998	4055910	4091930	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|3990998_3991484_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|3991572_3991710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|3991702_3992683_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|3992949_3993759_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|3993798_3994479_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|3994472_3994931_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|3994942_3995305_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|3995387_3996071_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|3996126_3996435_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|3996453_3996768_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|3996764_3999239_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|3999246_4000638_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4000634_4000820_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4000798_4001500_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4001496_4002318_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4002298_4003423_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4003415_4004435_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4004640_4005531_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4005775_4006567_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4006649_4007024_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4007001_4008411_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4008403_4009786_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4010120_4011725_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4011802_4012774_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4012784_4013711_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4014101_4015052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4015221_4016448_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4016647_4017514_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4017506_4018469_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4018569_4019520_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4019618_4020569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4020667_4021618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4021614_4023108_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4023104_4026212_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4026208_4029277_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4029273_4030524_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4030704_4031457_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4031498_4032143_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4032151_4033132_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4033231_4033975_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4034057_4034405_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4034502_4035345_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4035389_4036277_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4036303_4036492_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4036589_4038047_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4038033_4039560_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4039578_4040046_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4040045_4041068_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4041188_4041929_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4041983_4043084_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4043085_4044276_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4044395_4045412_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4045730_4046402_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4046398_4047307_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4047518_4048166_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4052026_4053094_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4053104_4053914_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4054003_4054777_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853639.1|4054959_4055910_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
