The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	27282	70036	4104294	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	77634	136108	4104294	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	164893	225404	4104294	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	233336	286924	4104294	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	390857	448366	4104294	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	589371	650562	4104294	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590818_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592705_593197_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593215_594289_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594335_595439_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595514_596135_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596155_596665_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596719_596971_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597034_598168_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598175_598562_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598558_601078_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601506_601845_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601841_602348_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602409_603210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603320_604262_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604355_605891_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607570_609421_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609424_610258_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610257_611199_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611450_612422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612563_614852_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615158_616067_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616121_617087_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617161_618823_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618894_619605_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619753_620704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621402_621786_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621843_622446_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622463_622865_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622998_623892_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623888_624470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625264_625999_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626039_627089_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627236_627815_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628201_629179_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629272_633667_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633867_634716_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634874_635687_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635742_636693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636791_637592_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637653_638037_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638048_639482_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639688_640018_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640020_640770_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640952_641873_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641919_642132_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642154_642577_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642593_643694_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643790_645308_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645383_646223_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646244_647126_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647207_648302_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648595_649546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649620_650562_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	655886	702077	4104294	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655886_656912_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656952_657192_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657261_658851_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658850_659399_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659479_660052_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660070_660982_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661055_662024_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662146_663220_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663224_665045_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665121_666072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666160_666496_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666629_667280_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667301_668720_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668789_669545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669513_670272_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670282_671164_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671180_671888_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671890_672649_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672858_674601_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674593_675118_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675157_675952_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676119_677193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677291_678242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678493_678700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678771_679383_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679937_680189_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680181_680871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681127_682078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682717_683203_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683189_684467_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684469_685888_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685916_686972_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686977_687220_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687342_687945_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688373_689324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689998_690250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690312_690795_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690796_690997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690996_691392_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691388_691787_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691783_692206_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692213_692714_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692968_693487_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693496_693826_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693843_694134_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694159_696772_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696781_697141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697208_697742_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697738_698128_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698120_702077_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	708243	762173	4104294	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708243_709974_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710026_710455_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710457_711138_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711137_711596_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711632_712607_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712623_713940_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713971_714469_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714555_715245_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715244_716294_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716290_717085_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717253_717604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717579_718137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719266_720217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722354_723584_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723586_725029_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725133_726279_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726310_727108_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727132_728692_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728688_731061_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731170_732274_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732273_732966_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733109_733811_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733795_734173_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734904_735855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736014_736887_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737227_737446_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737485_738865_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738906_740304_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740343_741996_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741999_742884_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742883_743825_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743903_745523_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745689_746505_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746572_747142_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747142_748093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748747_749845_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749878_751144_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751301_752252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752495_753086_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753101_755546_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755665_756637_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756768_757293_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757252_758203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758424_760620_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760692_761121_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761222_762173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	813766	885779	4104294	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|813766_814717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|814815_815472_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|815619_818328_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|818337_819357_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|819353_820304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|820402_820891_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|820887_821571_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|821600_825056_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|825091_825952_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|826080_826998_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|827135_828116_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|828175_829966_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|829962_830739_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|830748_831267_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|831379_833650_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|833861_836093_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|836393_836723_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|836739_838224_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|838234_839737_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|839733_841746_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|841763_842072_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|842068_842716_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|842733_843222_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|843243_844317_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|844316_846644_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|846659_848027_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|848023_848518_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|848563_849820_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|849822_850446_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|850520_850997_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|851033_851393_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|851581_852739_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|853051_854002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854019_854574_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854575_855010_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855006_855441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855424_856228_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856244_857060_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857056_857872_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858018_858720_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858747_860706_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860788_861739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861959_862628_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862751_863858_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863870_866984_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866980_868474_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868488_869160_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869203_869698_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869838_870486_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870589_872638_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872634_874647_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874672_876007_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876115_877108_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877174_879259_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879283_880255_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880383_881415_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881418_882570_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882740_883664_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883741_884566_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884762_885779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	893413	956494	4104294	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|893413_895645_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896432_896879_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896900_897647_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897790_898768_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899401_900013_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900006_901224_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901364_902315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902311_903031_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903151_905311_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905401_905671_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|905964_906492_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906510_907290_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907457_908474_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908546_909038_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909048_910764_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911927_912878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912874_914707_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915105_915765_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915858_916005_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916113_916281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916292_916973_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917254_917971_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917985_919287_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921431_924320_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924543_925896_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925924_926446_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926442_927897_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927931_928180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928285_929161_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929186_930242_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930254_931046_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931078_932449_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933625_934576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934628_934850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935009_935222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935341_936460_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936965_937217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937329_938280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938276_938660_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938714_940529_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940678_941506_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941551_942532_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942528_942741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942737_943919_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944082_944817_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944818_947431_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947566_949480_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950095_950506_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950603_951689_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951787_952738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952734_953709_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953833_954745_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955021_955414_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955543_956494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	975916	1046183	4104294	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|975916_976867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|976947_977859_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|977919_979065_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|979084_979999_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|980070_980820_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|980819_981749_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|981992_983819_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|983901_984543_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|984765_985767_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|987603_988668_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|989465_990374_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|991861_993136_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|993289_993670_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|993677_994550_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|994855_995236_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|995446_996172_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|996267_997218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997322_998372_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998509_999526_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001034_1001607_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001666_1002398_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002449_1003367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004174_1007354_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007350_1008733_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008802_1009054_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009199_1009814_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1010000_1012115_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012190_1013042_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013038_1013665_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013661_1015416_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015708_1018414_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018426_1020088_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020100_1021891_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022112_1023288_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023330_1024281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029719_1030493_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032640_1034989_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035143_1035785_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035888_1037022_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037114_1037267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037298_1037847_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037865_1038351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038528_1039467_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039832_1040777_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043493_1044354_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045232_1046183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1058401	1116832	4104294	holin,transposase,tRNA,protease	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1058401_1059418_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1060206_1061256_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061252_1062896_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062892_1063780_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063920_1064394_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064383_1065406_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067767_1068784_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069116_1070052_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070101_1071982_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072048_1072393_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073670_1074744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077405_1078422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080464_1081415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082617_1084039_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087906_1088737_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094452_1094917_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094943_1095894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095911_1096049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097082_1097940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107619_1109506_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109447_1109699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109743_1110376_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110394_1110997_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111148_1112099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112679_1113387_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115881_1116832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1156531	1218709	4104294	transposase,tRNA	Erysipelothrix_phage(33.33%)	49	NA	NA
WP_010930198.1|1156531_1157482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157580_1158204_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166534_1169405_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169450_1170665_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170894_1172322_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172419_1173511_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173531_1174290_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174377_1175280_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175276_1176227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176356_1177340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177394_1178117_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179595_1180951_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181031_1183407_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183571_1185647_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185708_1186509_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186610_1187573_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187560_1188316_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188423_1190061_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190128_1190866_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190968_1191544_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191716_1192253_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192255_1192600_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192615_1193461_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193499_1194879_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194956_1195838_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195936_1196887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196883_1197294_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197401_1198256_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198248_1199211_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199256_1200381_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200486_1201365_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201489_1202269_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202422_1203844_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204278_1205976_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206202_1207144_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207470_1208217_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208224_1209151_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209272_1210190_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210229_1211183_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211207_1211786_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213459_1214068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214145_1214499_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214582_1215572_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_076879566.1|1215774_1216725_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216811_1217762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217758_1218709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1269637	1326848	4104294	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1269637_1270588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274334_1274946_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275168_1276629_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276725_1278318_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278671_1278929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278930_1280271_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280366_1281056_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281068_1282499_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284223_1285045_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285055_1286627_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286655_1287633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287659_1288463_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288459_1289254_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289261_1290497_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290489_1290924_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291673_1292624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293245_1294973_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295084_1296443_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296735_1297686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297726_1298797_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298819_1299698_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299869_1300841_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1301003_1301846_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302007_1302688_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302681_1303851_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303847_1304879_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304922_1306164_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306198_1307731_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307811_1308435_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308465_1309077_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309112_1309583_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310014_1311019_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311055_1312570_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312573_1313533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313561_1314365_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314366_1316001_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316084_1317146_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317344_1317614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317617_1318142_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318557_1319508_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319504_1320539_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320647_1321286_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321580_1321808_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321930_1322644_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322888_1323839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323942_1324224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324338_1325787_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325897_1326848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1417081	1469234	4104294	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1417081_1418032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418198_1418552_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418564_1418927_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418968_1419394_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419596_1420853_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421051_1422032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422181_1423423_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423521_1424472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424480_1425176_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427997_1428597_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428607_1430773_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430796_1432581_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432580_1432670_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433364_1433637_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433636_1435703_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435699_1436650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436748_1437699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437814_1438147_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438143_1438830_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438816_1439776_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439817_1442178_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442177_1442810_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442911_1444252_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444298_1445654_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445779_1446424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446368_1446686_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446958_1447474_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447567_1447729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447744_1448500_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448838_1449045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449052_1449712_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450006_1452211_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452321_1453545_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453667_1454642_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454709_1455903_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455917_1456718_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456714_1458571_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458567_1459173_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459191_1460577_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461302_1462529_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462617_1463400_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463498_1464449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464475_1465249_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465260_1466502_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468283_1469234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1513159	1581245	4104294	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1513159_1513648_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513765_1514344_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514449_1514818_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514916_1515867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515873_1516986_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517672_1518875_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518910_1519057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519078_1521739_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1521751_1525156_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525823_1528049_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528095_1528422_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528472_1529081_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529179_1530130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530199_1530964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1530960_1531560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531663_1532515_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532574_1533201_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533197_1534148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534246_1535359_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535348_1536350_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536455_1537967_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537963_1539268_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539379_1539940_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540207_1540762_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541217_1541433_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541687_1544285_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544281_1545469_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1546127_1546742_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1546830_1547958_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547969_1548875_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549767_1550718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550899_1551652_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551720_1552380_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552376_1553105_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553117_1555397_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555421_1555625_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555666_1556299_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556434_1557352_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557348_1558062_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558299_1559070_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559074_1559674_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559918_1561409_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561467_1561752_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1561889_1562045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562317_1563244_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563380_1564121_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564287_1565664_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565845_1566751_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568402_1570205_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1570331_1570973_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571071_1572022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572043_1573264_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573449_1574862_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574925_1575993_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575992_1577480_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577489_1578434_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578593_1579292_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579369_1580275_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580294_1581245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1617194	1672785	4104294	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617194_1618145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618203_1618977_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618969_1620526_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620522_1621473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622799_1623402_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623641_1624343_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624336_1625119_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625303_1626254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626352_1627090_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627279_1628038_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628084_1629074_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629251_1630220_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631759_1632728_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632736_1633678_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634151_1635162_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635152_1636667_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636663_1638010_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1638012_1639047_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639096_1640722_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641274_1642225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642329_1643277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643330_1645145_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645137_1645812_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645941_1649016_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649029_1649329_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649643_1650267_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1650510_1651380_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651357_1652302_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652387_1653314_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653426_1654206_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654196_1655393_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655423_1656374_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656595_1657285_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657349_1658105_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658156_1659149_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659158_1660112_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660227_1661190_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662591_1663020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663016_1663967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1664260_1664998_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665421_1666609_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1666612_1666993_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668712_1669684_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669697_1670411_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670415_1671333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671439_1671736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671834_1672785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1830552	1889822	4104294	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830552_1831503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831627_1832437_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1832637_1833588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834861_1836079_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837135_1838038_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838114_1838987_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839117_1839486_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839543_1840590_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840785_1842042_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842046_1843384_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843533_1844490_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844592_1845525_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845640_1845961_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845953_1846313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846360_1847935_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847987_1848932_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848949_1849780_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849772_1851407_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851403_1852759_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853665_1855243_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855246_1856521_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856618_1856993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858708_1859842_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859879_1860485_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860481_1861300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861371_1863996_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863982_1864237_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864303_1864885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865188_1865449_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865614_1866238_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866237_1867011_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1867007_1868216_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868241_1868715_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868788_1869739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869837_1870788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870886_1872236_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1873001_1873757_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873849_1876732_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877054_1877480_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877507_1878656_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878652_1879159_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1879165_1880461_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1880519_1881806_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881807_1882446_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1882448_1883609_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883635_1884991_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884994_1886065_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886203_1886440_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886527_1887634_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887599_1888904_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888922_1889822_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1900062	1944385	4104294	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1900062_1901013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901111_1902062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902261_1903347_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903362_1904124_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1904120_1905080_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1905142_1905643_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905675_1906419_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906514_1906754_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906767_1906920_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1907005_1908496_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908587_1909526_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909522_1909699_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909701_1910364_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911985_1912129_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912125_1913100_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1913266_1914217_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914213_1915488_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915591_1916785_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916781_1917435_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917431_1918868_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918855_1919215_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920029_1920170_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920187_1921138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922183_1924049_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924306_1925827_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925914_1926565_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1927513_1928809_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928830_1929715_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929813_1930689_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930678_1931035_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931165_1932140_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932269_1932449_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932546_1933071_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933081_1933918_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934030_1934402_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934398_1934950_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934965_1936657_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936705_1937386_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937633_1938098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938267_1939197_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939209_1939857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939930_1941748_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941831_1942782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943434_1944385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	1974158	2038527	4104294	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974158_1975109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975330_1976281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976379_1977345_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977482_1978382_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980976_1982464_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982474_1983671_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983743_1985063_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985059_1985935_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985965_1987114_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987131_1987446_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987467_1988190_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988189_1989008_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989012_1989540_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989545_1990802_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991160_1992300_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992377_1993250_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994120_1995071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995030_1995666_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996025_1997348_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997666_1998488_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999912_2000485_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000524_2002354_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002316_2003375_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003412_2003874_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003958_2004705_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006195_2009426_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009492_2010824_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011076_2011451_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011553_2012732_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012742_2013333_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013443_2014250_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014275_2015070_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016070_2017045_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017203_2017716_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017872_2018844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020588_2021395_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2021391_2022693_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2022643_2023408_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023521_2024292_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024376_2025564_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025636_2026011_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2026111_2027374_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027370_2028228_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028400_2029402_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2029853_2030804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2032319_2033519_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033887_2034124_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034187_2034355_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2034468_2036274_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2036527_2037478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037576_2038527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	2170056	2219709	4104294	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170056_2171007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171105_2173100_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173159_2174125_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174114_2176976_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176978_2177485_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177589_2178798_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178799_2179738_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179899_2180373_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180369_2181320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181430_2181871_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181999_2183229_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183267_2184089_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184142_2185294_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185385_2185874_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188424_2190974_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191044_2193618_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193883_2194084_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194115_2194277_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194334_2194673_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194821_2195772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196546_2197215_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2197196_2199212_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2199394_2200144_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200156_2201020_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201023_2202439_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202572_2203301_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203439_2203640_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203815_2204214_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204237_2205638_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205756_2206509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2206797_2207397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207501_2208281_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208277_2209162_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209179_2209959_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209943_2210702_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2210827_2211475_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211742_2212759_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212856_2213897_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214031_2215324_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216683_2217067_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217084_2217672_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217709_2218660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218758_2219709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	2476016	2534260	4104294	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2476016_2476967_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477446_2478103_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478117_2479785_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479787_2480417_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480628_2481723_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481867_2482680_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2482683_2484387_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2484437_2485568_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485754_2486831_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486912_2487563_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487577_2488981_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489264_2490083_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2490079_2490784_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491683_2492799_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492832_2493207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493229_2494387_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494399_2494633_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495267_2498237_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498251_2498461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498612_2499242_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2499238_2501329_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501352_2502033_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502029_2502590_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502596_2503694_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503846_2504440_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504436_2505729_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505742_2506285_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506294_2507131_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507164_2508226_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508267_2509320_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509335_2509638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509779_2510730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2510908_2512603_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512599_2513685_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513732_2514632_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514642_2515287_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516308_2519551_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519561_2520716_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520942_2521905_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2522003_2522954_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523052_2524003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524012_2524702_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524761_2525199_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525244_2526138_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526185_2527358_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527354_2528509_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2528705_2529056_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529045_2529480_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529496_2530447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530594_2531062_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531042_2532200_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532265_2533192_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533309_2534260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	2576538	2643038	4104294	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576538_2577489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577858_2578431_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578433_2579444_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579436_2579937_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579947_2580289_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2580300_2581092_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581108_2581378_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581400_2582189_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582235_2583252_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583468_2584911_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585089_2586709_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586829_2588650_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588728_2590261_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2590294_2591941_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592010_2593033_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593050_2594184_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594186_2594876_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594875_2595661_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595704_2596469_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596507_2597929_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597994_2598699_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598746_2599166_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599178_2599586_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599769_2600480_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600606_2600897_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600914_2601397_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605902_2607057_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607362_2608379_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608625_2609414_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609480_2610161_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610157_2610928_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611026_2611977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612032_2612950_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612960_2614139_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614158_2615154_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616742_2617351_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617338_2618379_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618396_2619359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619355_2620549_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620545_2621343_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621368_2622355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622373_2624413_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2624614_2625295_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625308_2626220_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626216_2626795_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626933_2627839_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627846_2631266_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631253_2633854_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634809_2635442_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635835_2636594_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2636590_2637793_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637980_2638931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639838_2640984_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640970_2641726_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641842_2642022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642087_2643038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	2806643	2861160	4104294	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806643_2807594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807922_2808528_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808581_2809895_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809969_2810440_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810439_2811228_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811238_2812891_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812978_2813929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815090_2815597_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815593_2816358_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816373_2816658_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816722_2817712_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817883_2818813_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818784_2819471_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819504_2820050_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820094_2821360_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821356_2822259_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823440_2824385_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824479_2825997_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826038_2827667_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827774_2828656_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831768_2832143_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832167_2832506_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832549_2834184_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834222_2835569_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835676_2837098_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837167_2837752_-	nitroreductase	NA	NA	NA	NA	NA
WP_010929591.1|2837854_2838805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838939_2840046_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840056_2841154_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841298_2842504_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842510_2843032_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843028_2843520_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843516_2843768_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843748_2844234_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844369_2847831_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847848_2848733_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848742_2849174_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849420_2849924_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850001_2851402_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851476_2852352_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852348_2853356_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853823_2854129_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854219_2854810_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855000_2856017_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856208_2858545_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858627_2859062_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859160_2860111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860209_2861160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	2869185	2925971	4104294	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2869185_2870136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871842_2872109_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872816_2873155_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877708_2878311_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878407_2879697_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879754_2880486_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880482_2881286_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881282_2882371_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882367_2883297_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883445_2884591_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884612_2885563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885893_2889715_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889871_2890540_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890544_2892218_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892236_2893556_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893560_2895876_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895931_2898100_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898096_2903286_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903375_2903690_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903917_2904163_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904257_2904776_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904875_2906081_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906196_2907594_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907710_2908289_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908361_2909753_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909920_2910871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911151_2911772_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911768_2912182_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912178_2913222_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913277_2913466_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913475_2914240_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914330_2914987_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915078_2915837_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915862_2917464_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917664_2918669_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918769_2919033_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919150_2919927_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920517_2921468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923851_2924964_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925020_2925971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	2956357	3000048	4104294	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2956357_2957308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957428_2958325_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960602_2962828_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962992_2964081_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964037_2964691_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964738_2965536_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966067_2967018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967092_2968247_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968303_2969254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969352_2969658_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969686_2970121_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970122_2971367_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971363_2972074_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972088_2973000_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973362_2973767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973763_2974222_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974228_2975137_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975133_2976000_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975986_2976814_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976824_2977952_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979029_2980268_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980309_2981572_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981578_2982331_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982382_2982568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982843_2983308_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983339_2983999_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984143_2986252_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986248_2987199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987302_2987923_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988014_2988767_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989901_2991026_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991071_2991440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991681_2992632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993667_2994210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994407_2994578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994595_2995546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995542_2996508_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996577_2997414_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997926_2999036_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999097_3000048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	3379994	3433735	4104294	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379994_3380945_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381349_3381994_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382018_3382603_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382703_3383321_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383323_3385039_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385035_3385344_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385360_3385978_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386022_3386325_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386425_3387280_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387467_3387692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387861_3388134_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388551_3388959_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389328_3390123_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390223_3391459_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391527_3392544_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392555_3393932_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393928_3395125_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395121_3396660_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396656_3397916_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399856_3400807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401573_3402668_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402660_3403995_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403948_3404632_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404657_3405821_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3405817_3406819_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406818_3407691_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407687_3408437_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408433_3409225_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409221_3410361_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410636_3411422_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411455_3412238_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412241_3412631_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3413770_3414634_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3414669_3415758_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415754_3416705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417058_3420037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420963_3421842_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423790_3424741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424737_3425205_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425247_3426018_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3426038_3426839_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426849_3428259_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428353_3429139_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429378_3430395_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430502_3430895_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431032_3431713_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431717_3432689_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432784_3433735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	3439890	3499188	4104294	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3439890_3441654_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441765_3442644_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442756_3443572_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443575_3443827_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443911_3444928_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445258_3445480_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447840_3448758_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449255_3450464_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450543_3452115_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452232_3453168_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453356_3454301_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454868_3460586_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460591_3461719_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461774_3462401_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3462672_3463689_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463784_3464495_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464491_3465481_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465576_3467208_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467210_3467948_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468103_3468976_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3469244_3470465_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470461_3471121_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471192_3471825_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471854_3472373_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472383_3473493_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473539_3474394_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474395_3475298_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476520_3477471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479225_3480215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3480211_3480370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3480390_3481179_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481175_3482207_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482225_3482789_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482844_3484365_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484628_3485333_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3485340_3486078_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486183_3486558_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486600_3487890_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487886_3489056_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489052_3489892_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489951_3490887_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490899_3491850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491948_3492911_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492942_3493302_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493426_3494329_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494330_3496103_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496137_3496914_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498237_3499188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011735	Bordetella pertussis strain I379 chromosome, complete genome	4104294	3514126	3572199	4104294	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514126_3515077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515205_3516339_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516382_3517288_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517290_3518991_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518987_3519908_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519915_3520893_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520951_3521986_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3523960_3524197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524323_3525187_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525275_3526097_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526176_3526914_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3526910_3527903_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3528016_3528679_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528723_3529872_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3532195_3533146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533486_3534437_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534535_3535486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535782_3536280_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536322_3538098_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538105_3538972_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538978_3539713_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540882_3541677_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541966_3542557_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542590_3543919_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543993_3545139_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545250_3546249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546211_3546646_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548162_3549047_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549043_3550249_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550245_3551106_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3551218_3553009_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3553049_3553715_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3553715_3554024_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554189_3555476_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3556909_3557860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559811_3561026_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561131_3562121_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562117_3562726_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562738_3563368_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563364_3563985_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564016_3564808_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565659_3566115_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3566133_3567060_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567113_3568400_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569330_3570203_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570199_3571150_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571248_3572199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
