The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	27282	71085	4113693	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|61523_61937_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	78683	137157	4113693	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|133731_134034_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	165942	289022	4113693	tRNA,transposase,protease	Klosneuvirus(11.76%)	106	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190579_191053_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|220103_223046_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|226551_227502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|227720_228416_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|228432_229845_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|229957_231388_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|231429_233343_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|233661_234228_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|234318_235320_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|235434_236385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|236471_237422_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|237418_238369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238467_239265_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240214_240625_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|241646_242390_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242433_243477_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243647_245750_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247160_248117_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248135_248627_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248623_249979_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|249979_250678_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250674_251376_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251628_252678_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252783_253725_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253721_255611_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255697_256336_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|256478_257864_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257794_258331_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258482_259874_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259890_260871_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261006_261990_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262054_262954_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263060_264815_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264822_265947_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265960_266941_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267671_268622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269181_269727_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|269810_271430_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271445_272600_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272613_272739_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272735_274487_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274483_276163_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276225_276774_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277916_278195_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279238_280189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|280206_280353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280466_280628_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280635_280776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281294_281744_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281753_282365_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|282523_283378_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283397_284780_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284844_285486_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285625_286084_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286108_286885_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286938_288075_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288071_289022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	558456	617756	4113693	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|558456_559407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|560730_561507_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|561541_563314_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|563315_564218_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|564342_564702_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|564733_565696_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|565794_566745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|566757_567693_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|567752_568592_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|568588_569758_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|569754_571044_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|571086_571461_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|571566_572304_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|572311_573016_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|573279_574800_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|574855_575419_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|575437_576469_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|576465_577254_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|577274_577433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905441.1|577429_578419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|580175_581126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|582348_583251_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|583252_584107_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|584153_585263_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|585273_585792_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|585821_586454_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|586525_587185_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|587181_588402_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|588670_589543_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|589698_590436_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|590438_592070_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|592165_593155_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|593151_593862_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|593957_594974_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|595245_595872_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|595927_597055_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|597060_602778_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|603345_604290_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|604478_605414_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|605531_607103_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|607182_608391_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|608888_609806_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|612166_612388_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|612718_613735_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|613819_614071_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|614074_614890_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|615002_615881_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|615992_617756_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	623911	677652	4113693	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|623911_624862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|624957_625929_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|625933_626614_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|626751_627144_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|627251_628268_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|628507_629293_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|629387_630797_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|630807_631608_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|631628_632399_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|632441_632909_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|632905_633856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|635804_636683_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|637609_640588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|640941_641892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|641888_642977_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|643012_643876_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|645015_645405_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|645408_646191_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|646224_647010_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|647285_648425_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|648421_649213_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|649209_649959_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|649955_650828_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|650827_651829_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|651825_652989_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|653014_653698_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|653651_654986_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|654978_656073_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|656839_657790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|659730_660990_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|660986_662525_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|662521_663718_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|663714_665091_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|665102_666119_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|666187_667423_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|667523_668318_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|668687_669095_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|669512_669785_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|669954_670179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|670366_671221_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|671321_671624_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|671668_672286_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|672302_672611_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|672607_674323_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|674325_674943_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|675043_675628_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|675652_676297_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|676701_677652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	726590	766540	4113693	tRNA,transposase,integrase,protease	Pseudomonas_phage(33.33%)	30	723838:723856	743726:743744
723838:723856	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|726590_727187_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|727183_727966_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|728038_729130_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|729409_730537_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|730878_731925_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|732072_735192_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|735193_738145_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|738160_739372_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|739555_740506_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|740522_741017_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|741020_741278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|741821_742733_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|742814_743099_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|743882_744833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
743726:743744	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|745251_747816_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|747860_749714_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|750046_751618_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|752886_753042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|753059_754010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|754095_754836_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|755062_756010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|757397_758348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|758365_758578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|758541_759357_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|759489_760929_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|760942_761284_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|761338_762994_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|763145_764156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|764288_765062_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|765589_766540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	776467	824085	4113693	tRNA,transposase,holin,protease	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|776467_777418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|777556_778309_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|778547_780272_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|780291_781551_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|781565_782660_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|782656_784783_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|784795_785476_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|785753_787127_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|787128_788148_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|788211_789183_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|789247_790198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|790296_791139_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|791138_791474_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|791544_792963_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|793242_794283_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|794362_794614_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|794724_795888_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|796171_797026_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|797022_797913_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|797955_798867_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|798893_799586_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|799600_800581_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|800593_802735_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|802783_803752_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|803742_804411_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|804371_805307_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|805303_806200_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|806196_806919_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|806909_807074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|807247_807751_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|808027_809143_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|809285_809750_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|809897_810437_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|810458_811793_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|811806_812112_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|812536_813118_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|813199_814150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|814248_815199_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|815639_816545_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|816600_818205_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|818461_819967_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|819981_820446_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|820735_821686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|821703_821892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|821848_822379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|822378_822690_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|823134_824085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	1008300	1102337	4113693	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1008300_1009251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1009353_1010016_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1010110_1010281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1010633_1011635_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1011637_1012834_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1012854_1013658_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1013738_1014035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1014065_1014629_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1014669_1015527_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1015534_1016284_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1016305_1017178_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1017206_1017986_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1018019_1018817_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1021471_1021864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1021857_1022718_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1022721_1023684_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1024460_1025150_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1026010_1026961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1027310_1028180_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1028250_1028946_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1028935_1029445_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1029441_1030662_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1030609_1031512_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023995373.1|1032398_1033685_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1033723_1035097_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1035135_1035837_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1036135_1037125_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1037225_1037687_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1037702_1038251_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1038392_1039868_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1039973_1041065_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1041068_1041851_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1041860_1042649_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1043774_1044209_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1044205_1045216_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1045259_1046186_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1046472_1046841_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1046893_1047040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1047057_1048008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1048052_1050479_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1050527_1051220_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1051292_1052492_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1052509_1053415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1053530_1054460_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1054485_1055832_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1055859_1056609_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1056622_1057405_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1057597_1058548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1058609_1059719_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1060231_1061068_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1061137_1062103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1062099_1063050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1063067_1063238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1063435_1063978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1065013_1065964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1066205_1066574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1066619_1067744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1068878_1069631_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1069722_1070343_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1070446_1071397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1071393_1073502_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1073646_1074306_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1074337_1074802_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1075077_1075263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1075314_1076067_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1076073_1077336_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1077377_1078616_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1079693_1080821_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1080831_1081659_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1081645_1082512_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1083878_1084283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1084374_1085325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1085342_1085507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1085694_1086606_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1086620_1087331_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1087327_1088572_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1088573_1089008_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1089036_1089342_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1089440_1090391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1090447_1091602_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1091676_1092627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1093158_1093956_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1094003_1094657_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1094613_1095702_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1095866_1098092_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1100369_1101266_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1101219_1101369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1101386_1102337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	1132722	1203692	4113693	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1132722_1133673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1133729_1134842_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1137225_1138176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1138766_1139543_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1139660_1139924_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1140024_1141029_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1141229_1142831_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1142856_1143615_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1143706_1144363_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1144453_1145218_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1145227_1145416_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1145471_1146515_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1146511_1146925_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1146921_1147542_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1147822_1148773_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1148940_1150332_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1150404_1150983_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1151099_1152497_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1152612_1153818_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1153917_1154436_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1154530_1154776_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1155003_1155318_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1155407_1160597_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1160593_1162762_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1162817_1165133_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1165137_1166457_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1166475_1168149_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1168153_1168822_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1168978_1172800_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1172954_1173113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1173130_1174081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1174102_1175248_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1175396_1176326_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1176322_1177411_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1177407_1178211_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1178207_1178939_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1178996_1180286_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1180382_1180985_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1185537_1185876_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1186583_1186850_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1188556_1189507_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1189503_1190835_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1192095_1194096_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1194088_1194730_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1194726_1195134_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1195130_1195931_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1196005_1196710_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1196741_1197536_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1197532_1198483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1198581_1199532_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1199630_1200065_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1200147_1202484_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1202675_1203692_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	1251086	1331961	4113693	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1251086_1252037_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1252033_1252984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1253244_1254273_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1254352_1255651_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1255647_1256229_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1256541_1260588_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1260828_1268490_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010929591.1|1268486_1269437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1270576_1271050_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1271189_1271810_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1271945_1272746_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1272800_1273892_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1273913_1274357_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1274385_1275018_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1275128_1275545_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1275537_1276230_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1276336_1276711_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1276787_1277597_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1277692_1278637_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1278675_1279647_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1279737_1280175_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1280233_1281115_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1282118_1282979_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1283011_1284394_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1284390_1285410_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1285782_1286277_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1286284_1287025_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1287105_1288710_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1288749_1289538_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1290740_1291829_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1292709_1293522_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1293534_1293843_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1293960_1295691_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1295692_1296838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1296967_1297636_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1297757_1298225_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1298360_1299743_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1299739_1300864_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1300860_1303497_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1303912_1304863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1308609_1309221_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1309443_1310904_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1311000_1312593_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1312946_1313204_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1313205_1314546_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1314641_1315331_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1315343_1316774_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1318498_1319320_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1319330_1320902_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1320930_1321908_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1321934_1322738_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1322734_1323529_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1323536_1324772_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1324764_1325199_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1325948_1326899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1327520_1329248_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1329359_1330718_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1330774_1330993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1331010_1331961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	1416617	1473023	4113693	transposase	Enterococcus_phage(16.67%)	51	NA	NA
WP_010930208.1|1416617_1417568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1417570_1418524_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1418551_1419403_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1419408_1420437_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1420433_1421477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1421544_1422570_-	dipeptidase	NA	NA	NA	NA	NA
WP_010930971.1|1422851_1424105_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1424115_1424388_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1424384_1427324_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1427331_1427931_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1427931_1428780_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1428817_1429804_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1429819_1431256_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1431268_1432060_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1432378_1433434_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_010930964.1|1433470_1434280_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1434280_1434829_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1434979_1435399_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1435473_1437135_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|1437150_1438050_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1438164_1439169_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1439226_1440315_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1440396_1440639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1440780_1441335_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1441342_1441723_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1441813_1443739_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1443839_1444973_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1445141_1447892_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1448224_1448599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1448636_1449179_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1449182_1450355_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1450376_1451264_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1451356_1452307_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1452324_1452477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1452473_1452827_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1452839_1453202_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1453243_1453669_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1453871_1455128_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1455326_1456307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1456456_1457698_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1457796_1458747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1458845_1459796_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|1459894_1460845_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1460853_1461549_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1464370_1464970_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1464980_1467146_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1467169_1468954_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1468953_1469043_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1469737_1470010_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1470009_1472076_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1472072_1473023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	1548483	1616566	4113693	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1548483_1548972_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1549089_1549668_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1549773_1550142_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1550240_1551191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1551197_1552310_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1552996_1554199_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1554234_1554381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1554402_1557063_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1557075_1560480_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1561147_1563373_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1563419_1563746_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1563796_1564405_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1564503_1565454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1565523_1566288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1566284_1566884_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1566987_1567839_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1567898_1568525_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1568521_1569472_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1569570_1570683_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1570672_1571674_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1571779_1573291_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1573287_1574592_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1574703_1575264_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1575531_1576086_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1576541_1576757_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1577011_1579609_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1579605_1580793_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1581448_1582063_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1582151_1583279_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1583290_1584196_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585088_1586039_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1586220_1586973_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1587041_1587701_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1587697_1588426_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1588438_1590718_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1590742_1590946_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1590987_1591620_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1591755_1592673_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1592669_1593383_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1593620_1594391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1594395_1594995_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1595239_1596730_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1596788_1597073_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1597210_1597366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1597638_1598565_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1598701_1599442_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1599608_1600985_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1601166_1602072_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1603723_1605526_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1605652_1606294_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1606392_1607343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1607364_1608585_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1608770_1610183_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1610246_1611314_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1611313_1612801_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1612810_1613755_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1613914_1614613_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1614690_1615596_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1615615_1616566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	1652515	1708106	4113693	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1652515_1653466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1653524_1654298_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1654290_1655847_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1655843_1656794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1658120_1658723_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1658962_1659664_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1659657_1660440_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1660624_1661575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1661673_1662411_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1662600_1663359_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1663405_1664395_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1664572_1665541_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1667080_1668049_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1668057_1668999_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1669472_1670483_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1670473_1671988_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1671984_1673331_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1673333_1674368_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1674417_1676043_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1676595_1677546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1677650_1678598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1678651_1680466_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1680458_1681133_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1681262_1684337_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1684350_1684650_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1684964_1685588_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1685831_1686701_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1686678_1687623_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1687708_1688635_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1688747_1689527_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1689517_1690714_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1690744_1691695_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1691916_1692606_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1692670_1693426_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1693477_1694470_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1694479_1695433_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1695548_1696511_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1697912_1698341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1698337_1699288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1699581_1700319_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1700742_1701930_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1701933_1702314_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1704033_1705005_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1705018_1705732_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1705736_1706654_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1706760_1707057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1707155_1708106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2028230	2076245	4113693	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|2028230_2029181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2029279_2031880_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2031986_2032991_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2033099_2034440_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2034480_2035509_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2035704_2036250_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2036246_2036807_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2036905_2037856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2037893_2038481_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2038498_2038882_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2040241_2041534_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2041668_2042709_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2042806_2043823_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2044090_2044738_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2044863_2045622_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2045606_2046386_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2046403_2047288_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2047284_2048064_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2048168_2048768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2049056_2049809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2049927_2051328_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2051351_2051750_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2051925_2052126_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2052264_2052993_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2053126_2054542_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2054545_2055409_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2055421_2056171_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2056353_2058369_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2058350_2059019_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2059793_2060744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2060842_2061793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2061941_2062280_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2062337_2062499_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2062530_2062731_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2062996_2065570_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2065640_2068190_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2070740_2071229_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2071320_2072472_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2072525_2073347_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2073385_2074615_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2074743_2075184_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2075294_2076245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2137807	2197077	4113693	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2137807_2138758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2138882_2139692_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2139892_2140843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2142116_2143334_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2144390_2145293_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2145369_2146242_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2146372_2146741_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2146798_2147845_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2148040_2149297_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2149301_2150639_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2150788_2151745_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2151847_2152780_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2152895_2153216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2153208_2153568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2153615_2155190_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2155242_2156187_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2156204_2157035_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2157027_2158662_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2158658_2160014_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2160920_2162498_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2162501_2163776_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2163873_2164248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2165963_2167097_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2167134_2167740_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2167736_2168555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2168626_2171251_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2171237_2171492_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2171558_2172140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2172443_2172704_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2172869_2173493_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2173492_2174266_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2174262_2175471_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2175496_2175970_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2176043_2176994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2177092_2178043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2178141_2179491_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2180256_2181012_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2181104_2183987_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2184309_2184735_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2184762_2185911_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2185907_2186414_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2186420_2187716_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2187774_2189061_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2189062_2189701_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2189703_2190864_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2190890_2192246_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2192249_2193320_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2193458_2193695_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2193782_2194889_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2194854_2196159_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2196177_2197077_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2207317	2251640	4113693	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|2207317_2208268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2208366_2209317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2209516_2210602_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2210617_2211379_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2211375_2212335_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2212397_2212898_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2212930_2213674_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2213769_2214009_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2214022_2214175_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2214260_2215751_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2215842_2216781_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2216777_2216954_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2216956_2217619_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2219240_2219384_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2219380_2220355_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|2220249_2220504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2220521_2221472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2221468_2222743_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2222846_2224040_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2224036_2224690_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2224686_2226123_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2226110_2226470_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2227284_2227425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2227442_2228393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2229438_2231304_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2231561_2233082_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2233169_2233820_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2234768_2236064_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2236085_2236970_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2237068_2237944_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2237933_2238290_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2238420_2239395_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2239524_2239704_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2239801_2240326_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2240336_2241173_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2241285_2241657_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2241653_2242205_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2242220_2243912_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2243960_2244641_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2244888_2245353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2245522_2246452_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2246464_2247112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2247185_2249003_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2249086_2250037_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2250689_2251640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2281413	2345782	4113693	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2281413_2282364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2282585_2283536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2283634_2284600_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2284737_2285637_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2288231_2289719_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2289729_2290926_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2290998_2292318_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2292314_2293190_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2293220_2294369_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2294386_2294701_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2294722_2295445_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2295444_2296263_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2296267_2296795_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2296800_2298057_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2298415_2299555_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2299632_2300505_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2301375_2302326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2302285_2302921_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2303280_2304603_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2304921_2305743_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2307167_2307740_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2307779_2309609_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2309571_2310630_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2310667_2311129_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2311213_2311960_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2313450_2316681_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2316747_2318079_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2318331_2318706_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2318808_2319987_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2319997_2320588_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2320698_2321505_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2321530_2322325_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2323325_2324300_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2324458_2324971_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2325127_2326099_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2327843_2328650_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2328646_2329948_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2329898_2330663_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2330776_2331547_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2331631_2332819_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2332891_2333266_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2333366_2334629_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2334625_2335483_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2335655_2336657_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2337108_2338059_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2339574_2340774_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2341142_2341379_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2341442_2341610_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2341723_2343529_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2343782_2344733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2344831_2345782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2510243	2568487	4113693	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2510243_2511194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2511673_2512330_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2512344_2514012_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2514014_2514644_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2514855_2515950_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2516094_2516907_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2516910_2518614_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2518664_2519795_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2519981_2521058_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2521139_2521790_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2521804_2523208_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2523491_2524310_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2524306_2525011_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2525910_2527026_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2527059_2527434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2527456_2528614_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2528626_2528860_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2529494_2532464_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2532478_2532688_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2532839_2533469_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2533465_2535556_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2535579_2536260_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2536256_2536817_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2536823_2537921_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2538073_2538667_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2538663_2539956_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2539969_2540512_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2540521_2541358_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2541391_2542453_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2542494_2543547_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2543562_2543865_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2544006_2544957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2544974_2545139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2545135_2546830_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2546826_2547912_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2547959_2548859_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2548869_2549514_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2550535_2553778_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2553788_2554943_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2555169_2556132_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2556230_2557181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2557279_2558230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2558239_2558929_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2558988_2559426_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2559471_2560365_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2560412_2561585_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2561581_2562736_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2562932_2563283_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2563272_2563707_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2563723_2564674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2564821_2565289_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2565269_2566427_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2566492_2567419_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2567536_2568487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2610767	2677267	4113693	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2610767_2611718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2612087_2612660_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2612662_2613673_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2613665_2614166_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2614176_2614518_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2614529_2615321_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2615337_2615607_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2615629_2616418_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2616464_2617481_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2617697_2619140_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2619318_2620938_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2621058_2622879_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2622957_2624490_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2624523_2626170_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2626239_2627262_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2627279_2628413_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2628415_2629105_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2629104_2629890_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2629933_2630698_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2630736_2632158_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2632223_2632928_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2632975_2633395_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2633407_2633815_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2633998_2634709_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2634835_2635126_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2635143_2635626_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2640131_2641286_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2641591_2642608_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2642854_2643643_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2643709_2644390_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2644386_2645157_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2645255_2646206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2646261_2647179_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2647189_2648368_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2648387_2649383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2650971_2651580_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2651567_2652608_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2652625_2653588_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2653584_2654778_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2654774_2655572_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2655597_2656584_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2656602_2658642_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2658843_2659524_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2659537_2660449_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2660445_2661024_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2661162_2662068_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2662075_2665495_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2665482_2668083_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2669038_2669671_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2670064_2670823_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2670819_2672022_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2672209_2673160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2674067_2675213_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2675199_2675955_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2676071_2676251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2676316_2677267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2876655	2949986	4113693	tRNA,transposase,protease	Catovirus(22.22%)	53	NA	NA
WP_010930211.1|2876655_2878011_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2879489_2880212_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2880266_2881250_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2881379_2882330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2882326_2883229_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2883316_2884075_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2884087_2885179_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2885276_2886704_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2886933_2888148_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2888193_2891064_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2893474_2893963_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2894088_2896785_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2896939_2899222_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2899401_2900025_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2900123_2901074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2901120_2901675_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2901742_2902588_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2902657_2903626_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2903625_2904489_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2907321_2911248_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2911983_2915214_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2915495_2916323_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2916356_2917052_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2917044_2918325_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2918334_2919312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2919293_2920994_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2921096_2922200_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2922230_2922986_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2922992_2924513_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2924555_2924858_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2924854_2925487_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2925565_2927431_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2927427_2928222_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2928250_2929366_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2930270_2931149_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2931148_2931973_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2932140_2933091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2933303_2936153_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2936134_2936863_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2937003_2938467_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2938463_2938835_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2938852_2940166_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2940202_2940661_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2940615_2940756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2940773_2941724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2941720_2942734_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2942873_2943860_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2944218_2944926_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2945506_2946457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2946608_2947211_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2947229_2947862_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2947906_2948158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2948099_2949986_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	2961711	3011324	4113693	tRNA,transposase,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005013747.1|2961711_2962662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2962688_2963153_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2964359_2966648_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2966764_2967637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2967679_2968834_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2968868_2969699_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2969782_2971327_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2971369_2971729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2971730_2972144_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2972184_2972502_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2972586_2973303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2973566_2974988_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2975054_2977802_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2978134_2979151_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2979486_2980128_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2980218_2981655_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2981812_2982886_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2982882_2984019_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2984163_2984508_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2984574_2986455_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2986504_2987440_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2987772_2988789_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2989726_2991154_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2991150_2992173_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2992162_2992636_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2992776_2993664_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2993660_2995304_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2995300_2996350_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2997138_2998155_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2998254_2998887_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2998895_2999285_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2999337_3000390_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3001253_3002960_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3003033_3003534_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3003548_3005606_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3005632_3005926_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3006027_3006975_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3006987_3007863_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3007983_3008544_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3008578_3008902_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3009337_3010075_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3010373_3011324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	3032275	3104769	4113693	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3032275_3033226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3033268_3034444_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3034665_3036456_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3036468_3038130_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3038142_3040848_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3041140_3042895_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3042891_3043518_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3043514_3044366_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_080501856.1|3044441_3046556_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3046742_3047357_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3047502_3047754_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3047823_3049206_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3049202_3052382_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3053189_3054107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3054158_3054890_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3054949_3055522_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3057030_3058047_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3058184_3059234_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929577.1|3059338_3060289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3060384_3061110_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3061320_3061701_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3062006_3062879_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3062886_3063267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3063420_3064695_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3066182_3067091_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3067888_3068953_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3070789_3071791_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3072013_3072655_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3072737_3074564_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3074807_3075737_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3075736_3076486_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3076557_3077472_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3077491_3078637_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3078697_3079609_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3079689_3080640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3080738_3081323_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3081357_3082347_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3082343_3083285_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3083281_3084502_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3084544_3084859_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3085050_3085410_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3085411_3087127_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3087314_3087986_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3088000_3089329_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3089325_3090225_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3090311_3091397_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3091389_3092523_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3092522_3095204_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3095574_3096156_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3096281_3097007_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3097003_3097681_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3097896_3099078_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3099850_3100033_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3100062_3101013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3101142_3101535_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3101811_3102723_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3102847_3103822_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3103818_3104769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	3118276	3172843	4113693	transposase,holin	Bacillus_phage(33.33%)	45	NA	NA
WP_010930066.1|3118276_3119227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3119339_3119591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3120096_3121215_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3121334_3121547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3121706_3121928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3121980_3122931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3124107_3125478_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3125510_3126302_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3126314_3127370_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3127395_3128271_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3128376_3128625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3128659_3130114_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3130110_3130632_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3130660_3132013_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3132236_3135125_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3137269_3138571_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3138585_3139302_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3139583_3140264_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3140275_3140443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3140551_3140698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3140791_3141451_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3141849_3143682_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3143678_3144629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3144727_3145678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3146841_3148557_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3148567_3149059_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3149131_3150148_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3150315_3151095_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3151113_3151641_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3151934_3152204_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3152294_3154454_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3154574_3155294_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3155290_3156241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3156381_3157599_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3157592_3158204_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3158837_3159815_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3159958_3160705_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3160726_3161173_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3161960_3164192_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3164214_3165015_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3165296_3166529_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3166639_3167629_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3167659_3169048_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3170646_3171630_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3171826_3172843_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	3237301	3310463	4113693	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3237301_3238252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3238248_3239268_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3239277_3241986_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3242133_3242790_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3242888_3243839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3243986_3244880_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3245079_3246774_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3246808_3247735_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3247803_3248901_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3248919_3249783_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3249794_3250577_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3250573_3251692_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3251688_3253221_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3253261_3254269_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3254413_3255136_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3255151_3256174_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3256490_3257225_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3257309_3259055_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3259051_3259804_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3259848_3260805_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3260893_3261460_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3261467_3262328_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3262357_3263086_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3263117_3263801_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3264638_3265553_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3265617_3266526_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3266616_3268041_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3268042_3269365_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3269361_3271500_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3271577_3276698_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3276798_3277107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3277176_3277734_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3277749_3279231_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3281401_3282739_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3282773_3284771_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3284788_3286837_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3286967_3287834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3288102_3289068_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3289182_3290331_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3290755_3291067_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3291100_3291361_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3291510_3292644_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3292714_3293851_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3294016_3294811_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3294873_3295317_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3295432_3296383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3296484_3296913_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3296985_3299181_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3299402_3300353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3300312_3300837_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3300968_3301940_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3302059_3304504_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3304519_3305110_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3305353_3306304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3306461_3307727_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3307760_3308858_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3309512_3310463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	3321750	3423961	4113693	transposase,tRNA,tail,protease,terminase	uncultured_Caudovirales_phage(14.81%)	109	NA	NA
WP_005012067.1|3321750_3322701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3323432_3323810_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3323794_3324496_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3324639_3325332_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3325331_3326435_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3326544_3328917_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3328913_3330473_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3330497_3331295_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3331326_3332472_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3332576_3334019_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3334021_3335251_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3337388_3338339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3339468_3340026_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3340001_3340352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3340520_3341315_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3341311_3342361_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3342360_3343050_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3343136_3343634_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3343665_3344982_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3344998_3345973_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3346009_3346468_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3346467_3347148_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3347150_3347579_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3347631_3349362_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3349427_3350000_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3349980_3350667_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3351022_3351694_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3352022_3352244_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3352243_3352525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3352521_3353037_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3353036_3353588_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3353566_3353809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3353813_3354626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3354625_3354889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3354929_3355127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3355107_3355524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|3356406_3357357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931430.1|3360526_3360916_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3360912_3361446_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3361513_3361873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3361882_3364495_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3364520_3364811_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3364828_3365158_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3365167_3365686_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3365940_3366441_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3366448_3366871_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3366867_3367266_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3367262_3367658_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3367657_3367858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3367859_3368342_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3368404_3368656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3369330_3370281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3370709_3371312_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3371434_3371677_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3371682_3372738_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_077071161.1|3372766_3374185_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3374187_3375465_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3375451_3375937_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3376576_3377527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3377544_3377766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3377783_3378473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3378465_3378717_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3379271_3379883_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3379954_3380161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3380412_3381363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3381461_3382535_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3382702_3383497_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3383536_3384061_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3384053_3385796_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3386005_3386764_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3386766_3387474_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3387490_3388372_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3388382_3389141_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3389109_3389865_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3389934_3391353_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3391374_3392025_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3392158_3392494_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3392582_3393533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930800.1|3393631_3394582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3394658_3396479_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3396483_3397557_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3397679_3398648_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3398721_3399633_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3399651_3400224_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3400304_3400853_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3400852_3402442_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3402511_3402751_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3402791_3403817_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3403882_3405064_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3405160_3405613_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3405622_3406963_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3407279_3408317_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3408698_3409058_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3409141_3410083_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3410157_3411108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3411401_3412496_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3412577_3413459_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3413480_3414320_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3414395_3415913_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3416009_3417110_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3417126_3417549_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3417571_3417784_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3417830_3418751_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3418933_3419683_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3419685_3420015_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3420221_3421655_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3421666_3422050_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3422111_3422912_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3423010_3423961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011734	Bordetella pertussis strain I375 chromosome, complete genome	4113693	4034815	4077673	4113693	transposase	Planktothrix_phage(50.0%)	36	NA	NA
WP_010931661.1|4034815_4035766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4035935_4037162_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4037361_4038228_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4038220_4039183_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4039283_4040234_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|4040332_4041283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4041381_4042332_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4042328_4043822_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4043818_4046926_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4046922_4049991_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4049987_4051238_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4051418_4052180_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4052212_4052863_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4052865_4053705_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4053945_4054689_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4054771_4055119_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4055216_4056059_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4056103_4056991_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4057017_4057206_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4057303_4058761_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4058747_4060274_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4060292_4060760_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4060759_4061782_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4061902_4062622_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4062697_4063798_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4063799_4064990_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4065109_4066126_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4066444_4067116_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4067112_4068021_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4068232_4068880_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4072731_4073808_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4073818_4074628_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4074717_4075491_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4075491_4075656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4075673_4076624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|4076722_4077673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
