The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	27282	70036	4107435	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	77634	136108	4107435	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	164892	225403	4107435	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	233335	286923	4107435	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	390856	448365	4107435	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	589370	650561	4107435	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590796_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619570_619735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622979_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638047_639400_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646243_647116_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	655885	702076	4107435	terminase,tail,transposase,tRNA	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680887_681109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690807_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	708242	762172	4107435	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728687_731060_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731169_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736013_736886_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737226_737445_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737484_738864_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738905_740303_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740342_741995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741998_742883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742882_743824_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743902_745522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745688_746504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746571_747141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747141_748092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749877_751143_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751300_752251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756767_757292_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757251_758202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758423_760619_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760691_761099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	884761	952737	4107435	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893412_895644_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902310_903030_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903150_905310_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905400_905670_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905758_905965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905963_906491_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906509_907289_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907456_908473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908545_909037_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909047_910763_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911926_912877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912873_914706_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915104_915764_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916291_916972_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917253_917970_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917984_919286_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921430_924319_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924542_925895_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925923_926445_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926441_927896_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927930_928179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928284_929160_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929185_930241_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930253_931045_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931077_932448_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933624_934575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934627_934849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935008_935221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935340_936459_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936555_936771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936964_937216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937328_938279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938275_938659_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938713_940528_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940677_941505_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941550_942531_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942527_942740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942736_943918_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944081_944816_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944817_947430_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947565_949479_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950094_950505_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950602_951688_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951786_952737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	996266	1068784	4107435	tRNA,transposase	Enterococcus_phage(14.29%)	59	NA	NA
WP_005012067.1|996266_997217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997321_998371_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998508_999525_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001033_1001606_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001665_1002397_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002448_1003366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004173_1007353_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008802_1009054_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009199_1009814_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010000_1012061_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012190_1013042_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013038_1013665_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013661_1015416_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015708_1018414_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018426_1020088_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020100_1021891_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022112_1023288_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023330_1024281_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024379_1025120_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025314_1027351_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027368_1028379_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028496_1029690_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029719_1030493_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030489_1031680_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031705_1032644_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032640_1034989_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035143_1035785_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037114_1037267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037298_1037847_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037865_1038351_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038528_1039467_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039469_1039787_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039832_1040777_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042457_1043108_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043161_1043497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043493_1044354_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044370_1044652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044725_1044989_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045232_1046183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046481_1047219_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047654_1047978_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048012_1048573_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048693_1049569_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049581_1050529_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050630_1050924_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050950_1053008_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053022_1053523_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053596_1055303_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056166_1057219_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057271_1057661_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057669_1058302_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058401_1059418_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060248_1061256_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061252_1062896_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062892_1063780_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063920_1064394_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064383_1065406_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065402_1066830_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067767_1068784_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1072537	1134613	4107435	holin,transposase,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1072537_1073674_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073670_1074744_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074901_1076338_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076428_1077070_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077405_1078422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080464_1081415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082617_1084039_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084302_1085019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085103_1085421_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085461_1085875_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085876_1086236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086278_1087823_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087906_1088737_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088771_1089926_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089968_1090841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090957_1093246_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094452_1094917_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094943_1095894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095911_1096049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096261_1097038_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097082_1097940_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097961_1098978_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099112_1100153_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100347_1102429_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102664_1104158_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104388_1105183_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105403_1106762_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106758_1107601_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107619_1109506_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109447_1109699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109743_1110376_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110394_1110997_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111148_1112099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112679_1113387_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113745_1114732_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114871_1115885_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115881_1116832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116849_1116990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116944_1117403_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117439_1118753_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118770_1119142_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119138_1120602_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120742_1121471_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121452_1124302_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124514_1125465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125632_1126457_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126456_1127335_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128239_1129355_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129383_1130178_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130174_1132040_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132118_1132751_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132747_1133050_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133092_1134613_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1152183	1218702	4107435	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1152183_1153980_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153979_1154948_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155017_1155863_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155930_1156485_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156531_1157482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157580_1158213_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158377_1160660_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160814_1163511_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163636_1164125_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166535_1169406_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169451_1170666_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170895_1172323_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172420_1173512_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173524_1174283_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174370_1175273_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175269_1176220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176349_1177333_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177387_1178110_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179588_1180944_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181024_1183400_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183564_1185640_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185701_1186496_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186603_1187566_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187553_1188309_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188416_1190054_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190121_1190859_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190961_1191537_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191709_1192246_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192278_1192593_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192608_1193454_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193492_1194872_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194949_1195831_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195929_1196880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196876_1197287_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197394_1198249_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198241_1199204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199249_1200374_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200479_1201358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201482_1202262_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202415_1203837_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204271_1205969_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206195_1207137_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207463_1208210_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208217_1209144_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209265_1210183_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210222_1211176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211200_1211779_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213452_1214061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214138_1214492_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214575_1215565_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215561_1215750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215767_1216718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216804_1217755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217751_1218702_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1269630	1326841	4107435	transposase	Klosneuvirus(16.67%)	50	NA	NA
WP_010931070.1|1269630_1270581_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274327_1274939_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275161_1276622_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276718_1278311_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278664_1278922_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278923_1280264_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280359_1281049_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281061_1282492_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284216_1285038_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285048_1286620_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286648_1287626_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287652_1288456_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288452_1289247_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289254_1290490_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290503_1290917_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1291227_1291545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1291666_1292617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293238_1294966_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295077_1296436_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296492_1296711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296728_1297679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297719_1298790_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298812_1299691_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299862_1300834_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300996_1301839_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302000_1302681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302674_1303844_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303840_1304872_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304939_1306157_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306191_1307724_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307804_1308428_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308458_1309070_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309105_1309576_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310007_1311012_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311048_1312563_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312566_1313526_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313554_1314358_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314359_1315994_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316077_1317139_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317337_1317607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317610_1318135_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318550_1319501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319497_1320532_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320640_1321279_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321573_1321801_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321923_1322637_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322881_1323832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323971_1324217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324331_1325780_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325890_1326841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1417074	1469227	4107435	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1417074_1418025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418042_1418195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418191_1418545_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418557_1418920_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418961_1419387_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419589_1420846_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421044_1422025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422174_1423416_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423514_1424465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424473_1425169_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427990_1428590_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428600_1430766_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430789_1432574_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432573_1432663_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433357_1433630_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433629_1435696_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435692_1436643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436741_1437692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437807_1438140_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438136_1438823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438809_1439769_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439801_1442171_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442170_1442803_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442904_1444245_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444291_1445647_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445937_1446174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446361_1446679_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446951_1447467_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447737_1448493_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448831_1449038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449045_1449705_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449999_1452204_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452314_1453538_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453660_1454635_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454702_1455896_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455910_1456711_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456707_1458564_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458560_1459166_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459184_1460570_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461295_1462522_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462610_1463393_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463491_1464442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464468_1465242_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465253_1466495_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468276_1469227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1513152	1581239	4107435	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1513152_1513641_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513758_1514337_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514442_1514811_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514909_1515860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515866_1516979_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517665_1518868_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519071_1521732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521744_1525149_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525816_1528042_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528088_1528415_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528465_1529074_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529172_1530123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530192_1530957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1530953_1531490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531656_1532508_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532567_1533194_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533190_1534141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534239_1535352_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535341_1536343_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536448_1537960_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537956_1539261_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539372_1539933_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540200_1540755_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541210_1541426_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541680_1544278_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544274_1545462_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1546121_1546736_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1546824_1547946_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547963_1548869_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549761_1550712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550893_1551646_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551714_1552374_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552370_1553099_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553111_1555391_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555415_1555619_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555660_1556293_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556428_1557346_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557342_1558056_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558293_1559064_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559068_1559668_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559912_1561403_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561461_1561746_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1562311_1563238_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563374_1564115_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564281_1565658_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565839_1566745_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568396_1570199_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1570316_1570967_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571065_1572016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572037_1573258_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573443_1574856_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574919_1575987_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575986_1577474_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577483_1578428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578587_1579286_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579363_1580269_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580288_1581239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1617188	1672779	4107435	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617188_1618139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618197_1618971_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618963_1620520_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620516_1621467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622793_1623396_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623635_1624337_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624330_1625113_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625297_1626248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626346_1627084_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627273_1628032_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628078_1629068_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629245_1630214_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631753_1632722_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632730_1633672_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634145_1635156_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635146_1636661_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636657_1638004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1638006_1639041_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639090_1640716_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641268_1642219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642323_1643271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643324_1645139_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645131_1645806_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645935_1649010_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649023_1649323_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649637_1650261_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1650504_1651374_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651351_1652296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652381_1653308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653420_1654200_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654190_1655387_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655417_1656368_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656589_1657279_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657343_1658099_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658150_1659143_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659152_1660106_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660221_1661184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662585_1663014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663010_1663961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1664254_1664977_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665415_1666603_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1666606_1666957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668706_1669678_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669691_1670405_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670409_1671327_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671433_1671730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671828_1672779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1830546	1889816	4107435	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830546_1831497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831621_1832431_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1832631_1833582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834855_1836073_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837129_1838032_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838108_1838981_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839111_1839480_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839537_1840584_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840779_1842036_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842040_1843378_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843527_1844484_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844586_1845519_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845634_1845955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845947_1846307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846354_1847929_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847981_1848926_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848943_1849774_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849766_1851401_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851397_1852753_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853659_1855237_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855240_1856515_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856612_1856987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858702_1859836_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859873_1860479_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860475_1861294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861365_1863990_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863976_1864231_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864297_1864879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865182_1865443_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865608_1866232_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866231_1867005_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1867001_1868210_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868235_1868709_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868782_1869733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869831_1870782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870880_1872230_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872995_1873751_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873843_1876726_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877048_1877474_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877501_1878650_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878646_1879153_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1879168_1880455_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1880504_1881800_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881801_1882440_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1882445_1883603_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883629_1884985_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884988_1886059_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886197_1886434_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886521_1887628_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887593_1888898_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888916_1889816_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1900056	1944379	4107435	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1900056_1901007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901105_1902056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902255_1903341_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903356_1904118_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1904114_1905038_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1905136_1905661_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905669_1906413_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906508_1906748_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906761_1906914_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1906999_1908490_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908581_1909520_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909516_1909693_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909695_1910358_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911979_1912123_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912119_1913094_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1912988_1913243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1913260_1914211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914207_1915482_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915585_1916779_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916775_1917429_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917425_1918862_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918849_1919209_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920023_1920164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920181_1921132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922177_1924043_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924300_1925821_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925908_1926559_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927507_1928803_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928824_1929709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929807_1930683_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930672_1931029_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931159_1932134_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932263_1932443_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932540_1933065_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933075_1933912_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934024_1934396_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934392_1934944_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934959_1936651_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936699_1937380_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937627_1938092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938261_1939191_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939203_1939851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939924_1941742_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941825_1942776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943428_1944379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	1974152	2038521	4107435	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974152_1975103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975324_1976275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976373_1977339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977476_1978376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980970_1982458_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982468_1983665_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983737_1985057_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985053_1985929_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985959_1987108_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987125_1987440_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987461_1988184_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988183_1989002_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989006_1989534_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989539_1990796_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991154_1992294_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992371_1993244_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994114_1995065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995024_1995660_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996019_1997342_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997660_1998482_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999906_2000479_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000518_2002348_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002310_2003369_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003406_2003868_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003952_2004699_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006189_2009420_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009486_2010818_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011070_2011445_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011547_2012726_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012736_2013327_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013437_2014244_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014269_2015064_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016064_2017039_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017197_2017710_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017866_2018838_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020582_2021389_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021385_2022687_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022637_2023402_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023515_2024286_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024370_2025558_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025630_2026005_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026105_2027368_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027364_2028222_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028394_2029396_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029847_2030798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032361_2033513_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033881_2034118_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034181_2034349_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034462_2036358_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036521_2037472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037570_2038521_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	2170050	2219703	4107435	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170050_2171001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171099_2173094_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173153_2174119_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174108_2176970_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176972_2177479_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177583_2178792_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178793_2179732_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179893_2180367_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180363_2181314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181424_2181865_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181993_2183223_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183261_2184083_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184136_2185288_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185379_2185868_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188418_2190968_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191038_2193612_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193877_2194078_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194109_2194271_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194328_2194667_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194815_2195766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196540_2197209_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197190_2199146_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199388_2200138_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200150_2201014_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201017_2202433_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202566_2203295_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203433_2203634_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203809_2204208_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204231_2205632_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205750_2206503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206791_2207469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207495_2208275_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208271_2209156_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209173_2209953_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209937_2210696_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2210833_2211469_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211736_2212753_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212850_2213891_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214025_2215318_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216677_2217061_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217078_2217666_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217703_2218654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218752_2219703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	2476011	2534255	4107435	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2476011_2476962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2477441_2478098_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2478112_2479780_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2479782_2480412_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2480623_2481718_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2481862_2482675_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2482678_2484262_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2484432_2485563_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2485749_2486826_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2486907_2487558_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2487572_2488976_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2489259_2490078_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2490074_2490779_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2491678_2492794_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2492827_2493202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2493224_2494382_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2494394_2494628_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2495262_2498232_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2498246_2498456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2498607_2499237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2499233_2501291_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2501347_2502028_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2502024_2502585_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2502591_2503689_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2503841_2504435_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2504431_2505724_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2505737_2506280_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2506289_2507126_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2507159_2508221_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2508262_2509315_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2509330_2509633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2509774_2510725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2510742_2510907_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2510903_2512598_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2512594_2513680_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2513727_2514627_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2514637_2515282_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2516303_2519546_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2519556_2520711_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2520937_2521900_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2521998_2522949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2523047_2523998_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2524007_2524697_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2524756_2525194_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2525239_2526133_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2526180_2527353_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2527349_2528504_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2528700_2529051_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2529040_2529475_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2529491_2530442_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2530589_2531057_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2531037_2532195_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2532260_2533187_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2533304_2534255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	2576533	2643033	4107435	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2576533_2577484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2577853_2578426_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2578428_2579439_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2579431_2579932_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2579942_2580284_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2580352_2581087_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2581103_2581373_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2581395_2582184_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2582230_2583247_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2583463_2584906_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2585084_2586704_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2586824_2588645_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2588723_2590256_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2590289_2591936_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2592005_2593028_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2593045_2594179_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2594181_2594871_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2594870_2595656_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2595699_2596464_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2596502_2597924_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2597989_2598694_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2598741_2599161_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2599173_2599581_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2599764_2600475_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2600601_2600892_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2600909_2601392_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2605897_2607052_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2607357_2608374_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2608620_2609409_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2609475_2610156_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2610152_2610923_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2611021_2611972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2612027_2612945_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2612955_2614134_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2614153_2615149_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2616737_2617346_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2617333_2618374_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2618391_2619354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2619350_2620544_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2620540_2621338_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2621363_2622350_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2622368_2624408_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2624609_2625290_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2625303_2626215_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2626211_2626790_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2626928_2627834_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2627841_2631261_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2631248_2633849_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2634804_2635437_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2635830_2636589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2636585_2637788_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2637975_2638926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2639833_2640979_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2640965_2641721_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2641837_2642017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2642082_2643033_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	2671148	2708560	4107435	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2671148_2672099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2672197_2673148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2673240_2673780_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2673886_2674231_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2674288_2675737_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2675924_2676260_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2677887_2679066_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2679148_2679649_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2679758_2680460_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2680471_2680936_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2680950_2681226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2681222_2681999_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2682027_2682855_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2682980_2683451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2683577_2684471_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2684518_2685700_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2685712_2686528_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2686661_2687189_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2687185_2687683_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2687830_2688208_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2688429_2689380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2689478_2690090_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2690324_2691452_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2691562_2692651_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2692703_2693555_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2693574_2694456_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2694632_2695946_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2696156_2696990_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2696986_2697568_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2697921_2698872_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2698887_2700003_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2700105_2701032_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2701031_2702270_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2702266_2703034_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2703034_2703736_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2703817_2704264_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2705153_2705792_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2706560_2707511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2707609_2708560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	2807687	2928064	4107435	protease,transposase	Agrobacterium_phage(16.67%)	97	NA	NA
WP_023853639.1|2807687_2808638_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2808736_2809687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810015_2810621_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810674_2811988_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812062_2812533_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812532_2813321_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813331_2814984_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815071_2816022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817183_2817690_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817686_2818451_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818466_2818751_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818815_2819805_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819976_2820906_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820877_2821564_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821597_2822143_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822187_2823453_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823449_2824352_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825533_2826478_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826572_2828090_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828131_2829760_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829867_2830749_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833861_2834236_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834260_2834599_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834642_2836277_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836315_2837662_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837769_2839191_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839260_2839845_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839947_2840898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841032_2842139_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842149_2843247_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843391_2844597_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844603_2845125_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845121_2845604_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845609_2845861_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845841_2846327_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846462_2849924_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849941_2850826_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850835_2851267_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851513_2852017_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852094_2853495_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853569_2854445_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854441_2855449_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855916_2856222_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856312_2856903_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857093_2858110_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858301_2860638_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860720_2861155_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861253_2862204_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862302_2863253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863249_2864044_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864075_2864780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864854_2865655_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865651_2866059_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866055_2866697_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866689_2868690_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869950_2871282_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871278_2872229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873935_2874202_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874909_2875248_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879801_2880404_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880500_2881790_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881847_2882579_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882575_2883379_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883375_2884464_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884460_2885390_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885538_2886684_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886705_2887656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887673_2887832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887986_2891808_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891964_2892633_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892637_2894311_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894329_2895649_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895653_2897969_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898024_2900193_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900189_2905370_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905468_2905783_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906010_2906256_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906350_2906869_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906968_2908174_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908289_2909687_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909803_2910382_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910454_2911846_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912013_2912964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913244_2913865_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913861_2914275_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914271_2915315_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915370_2915559_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915568_2916333_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916423_2917080_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917171_2917930_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917955_2919557_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919757_2920762_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920862_2921126_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921243_2922020_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922610_2923561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925944_2927057_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927113_2928064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	2958450	3002141	4107435	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958450_2959401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959418_2959568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959521_2960418_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962695_2964921_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965085_2966174_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966130_2966784_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966831_2967629_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968160_2969111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969191_2970340_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970396_2971347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971445_2971751_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971779_2972214_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972215_2973460_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973456_2974167_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974181_2975093_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975455_2975860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975856_2976315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976321_2977230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977226_2978093_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978079_2978907_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978917_2980045_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981122_2982361_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982402_2983665_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983671_2984424_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984475_2984661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984936_2985401_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985432_2986092_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986236_2988345_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988341_2989292_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989395_2990016_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990119_2990860_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991994_2993119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993164_2993533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993774_2994725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995760_2996303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996500_2996671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996688_2997639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997635_2998544_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998670_2999507_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000019_3001129_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001190_3002141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	3382086	3435827	4107435	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382086_3383037_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383441_3384086_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384110_3384695_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384795_3385413_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385415_3387131_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387127_3387436_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387452_3388070_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388114_3388417_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388517_3389372_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389559_3389784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389953_3390226_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390643_3391051_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391420_3392215_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392315_3393551_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393619_3394636_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394647_3396024_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396020_3397217_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397213_3398752_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398748_3400008_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401948_3402899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403665_3404760_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404752_3406087_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406040_3406724_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406749_3407913_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407909_3408911_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408910_3409783_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409779_3410529_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410525_3411317_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411313_3412453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412728_3413514_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413547_3414330_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414333_3414723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415862_3416726_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416761_3417850_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417846_3418797_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419150_3422129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423055_3423934_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425882_3426833_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426829_3427297_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427339_3428110_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428130_3428931_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428941_3430351_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430445_3431231_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431470_3432487_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432594_3432987_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433124_3433805_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433809_3434781_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434876_3435827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	3441982	3501280	4107435	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3441982_3443746_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443857_3444736_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444848_3445664_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445667_3445919_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446003_3447020_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447350_3447572_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449932_3450850_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451347_3452556_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452635_3454207_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454324_3455260_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455448_3456393_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456960_3462678_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462683_3463811_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463866_3464493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464764_3465781_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465876_3466587_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466583_3467573_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467668_3469300_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469302_3470040_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470195_3471068_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471417_3472557_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472553_3473213_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473284_3473917_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473946_3474465_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474475_3475585_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475631_3476486_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476487_3477390_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478612_3479563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481317_3482307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482482_3483271_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483267_3484299_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484317_3484881_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484936_3486457_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486720_3487425_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487432_3488161_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488275_3488650_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488692_3489982_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489978_3491148_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491144_3491984_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492043_3492979_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3492991_3493942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494040_3495003_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495034_3495394_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495518_3496421_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496422_3498195_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498229_3499006_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500329_3501280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	3516218	3574291	4107435	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516218_3517169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517297_3518431_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518474_3519380_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519382_3521083_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521079_3522000_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522007_3522985_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523043_3524078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526052_3526289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526415_3527279_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527367_3528189_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528268_3529006_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3529002_3529995_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530147_3530771_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530815_3531964_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3534287_3535238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535578_3536529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536627_3537578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537874_3538372_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538414_3540190_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540197_3541064_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541070_3541805_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542974_3543769_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544058_3544649_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544682_3546011_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546085_3547231_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547342_3548341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548303_3548738_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550254_3551139_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551135_3552341_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552337_3553198_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553310_3555101_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555141_3555786_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555807_3556116_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556281_3557568_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3559001_3559952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561903_3563118_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563223_3564213_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564209_3564818_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564830_3565460_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565456_3566077_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566108_3566900_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567751_3568207_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568225_3569152_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569205_3570492_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571422_3572295_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572291_3573242_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573340_3574291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011733	Bordetella pertussis strain I350 chromosome, complete genome	4107435	4006503	4071415	4107435	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006503_4006989_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007077_4007215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007207_4008188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008454_4009264_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009303_4009984_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009977_4010436_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010447_4010810_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010892_4011576_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011631_4011940_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011958_4012273_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012269_4014744_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014751_4016143_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016139_4016325_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016303_4017005_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017001_4017823_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017803_4018928_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018920_4019940_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020145_4021036_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021280_4022072_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022154_4022529_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022506_4023916_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023908_4025291_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025625_4027230_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027307_4028279_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028289_4029216_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029606_4030557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030726_4031953_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032152_4033019_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033011_4033974_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034074_4035025_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035123_4036074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036172_4037123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037119_4038613_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038609_4041717_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041713_4044782_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044778_4046029_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046209_4046962_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047003_4047648_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047656_4048637_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048736_4049480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049562_4049910_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050007_4050850_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050894_4051782_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051808_4051997_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052094_4053552_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053538_4055065_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055083_4055551_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055550_4056573_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056693_4057434_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057488_4058589_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058590_4059781_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059900_4060917_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061235_4061907_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061903_4062812_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063023_4063671_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067531_4068599_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068609_4069419_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069508_4070282_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070282_4070447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070464_4071415_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
