The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	27282	70036	4104202	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	77634	136108	4104202	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	164893	225404	4104202	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	233336	286924	4104202	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	555309	614609	4104202	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568428_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584034_585174_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	620764	675554	4104202	transposase	Salmonella_phage(33.33%)	49	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|631791_632742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633706_634585_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635511_638490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638843_639794_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639790_640879_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640914_641778_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642917_643307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643310_644093_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644126_644912_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645187_646327_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646323_647115_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647111_647861_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647857_648730_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648729_649731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649727_650891_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650916_651600_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651553_652888_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652880_653975_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654741_655692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657632_658892_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658888_660427_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660423_661620_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661616_662993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663004_664021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664089_665325_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665425_666220_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666589_666997_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667414_667687_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667856_668081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668268_669123_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669223_669526_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669570_670188_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670204_670513_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670509_672225_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672227_672845_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672945_673530_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673554_674199_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674603_675554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	724492	764442	4104202	tRNA,protease,transposase,integrase	Pseudomonas_phage(33.33%)	31	721740:721758	741628:741646
721740:721758	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724492_725089_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725085_725868_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725940_727032_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727311_728439_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728780_729827_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730337_733094_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733095_736047_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736062_737274_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737270_737471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|737457_738408_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738424_738919_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738922_739180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739723_740635_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740716_741001_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741784_742735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741628:741646	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743153_745718_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745762_747616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747948_749520_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|750788_750944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|750961_751912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751997_752738_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752964_753912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755299_756250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|756267_756480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|756443_757259_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757391_758831_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758844_759186_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759240_760896_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761047_762058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762190_762964_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763491_764442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	774369	821987	4104202	tRNA,protease,holin,transposase	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|774369_775320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775458_776211_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|776485_778174_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|778193_779453_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779467_780562_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|780558_782622_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|782697_783378_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783655_785029_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785030_786050_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786113_787085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787149_788100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788198_789041_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789040_789376_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789446_790865_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791144_792185_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792264_792516_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792626_793790_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794073_794928_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794924_795815_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795857_796769_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796795_797488_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797502_798483_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798495_800637_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800685_801654_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801644_802313_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802273_803209_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803205_804102_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804098_804821_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804811_804976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805149_805653_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805929_807045_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807187_807652_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807799_808339_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808360_809695_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809708_810014_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810438_811020_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812150_813101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813541_814447_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814502_816110_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816363_817869_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817883_818348_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818637_819588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|819605_819794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|819750_820281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820280_820592_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821036_821987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	963939	1038915	4104202	tRNA,protease,transposase	Klebsiella_phage(11.11%)	60	NA	NA
WP_005012067.1|963939_964890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931198.1|964988_965360_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_010931197.1|965484_966315_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_010931196.1|966325_967786_+|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_003813056.1|968042_969116_+	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A2I6UFP9	Klebsiella_phage	46.4	3.9e-77
WP_023853656.1|969137_981791_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.5	1.2e-15
WP_010931194.1|981920_983330_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_010931193.1|983464_984964_+	FAD-binding protein	NA	NA	NA	NA	NA
WP_003813049.1|984975_986085_+	glycolate oxidase subunit GlcE	NA	NA	NA	NA	NA
WP_003813047.1|986117_987347_+	glycolate oxidase subunit GlcF	NA	NA	NA	NA	NA
WP_010931192.1|987337_988249_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931191.1|988251_990465_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_033446272.1|990640_991651_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003813039.1|991694_993131_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA	NA
WP_010931189.1|993447_994566_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_010931188.1|994820_995696_-	N-formylglutamate amidohydrolase	NA	NA	NA	NA	NA
WP_010931187.1|995756_996743_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010931186.1|996913_997834_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	30.5	2.7e-26
WP_003813026.1|997846_998962_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999062_999881_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999978_1000590_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000749_1002126_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002188_1002647_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002731_1003427_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003488_1003770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004332_1005085_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005129_1006206_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006202_1007153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1007245_1007398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1007429_1007978_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1007996_1008482_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1008659_1009598_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1009600_1009918_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1009963_1010908_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1012588_1013239_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1013292_1013628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1013624_1014485_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1014501_1014783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1014856_1015120_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_010929591.1|1015363_1016314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1016612_1017350_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1017785_1018109_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1018143_1018704_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1018824_1019700_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1019712_1020660_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1020761_1021055_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1021081_1023139_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1023153_1023654_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1023727_1025434_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1026297_1027350_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1027402_1027792_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1027800_1028433_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1028532_1029549_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1030379_1031387_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1031383_1033027_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1033023_1033911_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1034051_1034525_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1034514_1035537_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1035533_1036961_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1037898_1038915_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	1042668	1103695	4104202	tRNA,holin,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1042668_1043805_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1043801_1044875_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1045032_1046469_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1046559_1047201_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1047536_1048553_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1048885_1051633_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1051699_1053121_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1053384_1054101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1054185_1054503_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1054543_1054957_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1054958_1055318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1055360_1056905_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1056988_1057819_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1057853_1059008_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1059050_1059923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1060039_1062328_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1063534_1063999_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1064025_1064976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1064993_1065131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1065343_1066120_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1066164_1067022_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1067043_1068060_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1068194_1069235_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1069429_1071511_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1071746_1073240_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1073470_1074265_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1074485_1075844_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1075840_1076683_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1076701_1078588_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1078529_1078781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1078825_1079458_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1079476_1080079_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1080230_1081181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1081761_1082469_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1082827_1083814_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1083953_1084967_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1084963_1085914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1085931_1086072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1086026_1086485_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1086521_1087835_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1087852_1088224_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1088220_1089684_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1089824_1090553_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1090534_1093384_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1093596_1094547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1094714_1095539_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1095538_1096417_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1097321_1098437_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1098465_1099260_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1099256_1101122_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1101200_1101833_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1101829_1102132_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1102174_1103695_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	1121265	1186847	4104202	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_095585338.1|1121265_1123062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1123061_1124030_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1124099_1124945_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1125012_1125567_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1125613_1126564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1126662_1127295_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1127457_1129740_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1129894_1132591_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1132716_1133205_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1135615_1138486_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1138531_1139746_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1139975_1141403_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1141500_1142592_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1142604_1143363_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1143450_1144353_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1144349_1145300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1145429_1146413_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1146467_1147190_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1148668_1150024_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1150104_1152480_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1152644_1154720_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1154781_1155576_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1155683_1156646_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1156633_1157389_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1157496_1159134_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1159201_1159939_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1160041_1160617_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1160789_1161326_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1161358_1161673_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1161688_1162534_+	membrane protein	NA	NA	NA	NA	NA
WP_050838896.1|1162572_1163952_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1164029_1164911_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1165009_1165960_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1165956_1166367_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1166474_1167329_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1167321_1168284_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1168329_1169454_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1169559_1170438_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1170562_1171342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1171495_1172917_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1173351_1175049_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1175275_1176217_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1176543_1177290_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1177297_1178224_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1178345_1179263_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1179302_1180256_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1180280_1180859_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1182532_1183141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1183218_1183572_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1183655_1184645_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1184641_1184830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1184847_1185798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1185896_1186847_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	1285983	1354470	4104202	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1285983_1286934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1287702_1288341_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1289230_1289677_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1289758_1290460_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1290460_1291228_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1291224_1292463_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1292462_1293389_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1293491_1294607_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1294622_1295573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1295926_1296508_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1296504_1297338_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1297548_1298862_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1299038_1299920_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1299939_1300791_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1300843_1301932_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1302042_1303170_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1303404_1304016_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1304114_1305065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1305286_1305664_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1305811_1306309_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1306305_1306833_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1306966_1307782_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1307794_1308976_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1309023_1309917_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1310043_1310514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1310639_1311467_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1311495_1312272_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1312268_1312544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1312558_1313023_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1313034_1313736_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1313845_1314346_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1314428_1315607_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1317234_1317570_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1317757_1319206_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1319263_1319608_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1319714_1320254_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1320346_1321297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1321314_1321554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1322035_1322467_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1322648_1323053_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1324289_1324613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1324615_1325503_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1325535_1325961_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1326032_1326386_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1326625_1327132_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1327170_1328502_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1328561_1329377_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1329373_1330228_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1333290_1335834_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1337200_1338955_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1338951_1341072_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1341076_1343272_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1343268_1346610_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1349412_1350363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1350428_1350608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1350724_1351480_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1351466_1352612_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1353519_1354470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	1674477	1744129	4104202	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1674477_1677135_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1677212_1678415_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1678411_1678924_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1679046_1679484_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1679760_1680711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1680809_1681760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1681923_1683819_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1683932_1684100_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1684163_1684400_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1684768_1685920_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1687483_1688434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1688885_1689887_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1690059_1690917_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1690913_1692176_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1692276_1692651_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1692723_1693911_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1693995_1694766_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1694879_1695644_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1695594_1696896_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1696892_1697699_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1699443_1700415_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1700571_1701084_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1701242_1702217_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1703217_1704012_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1704037_1704844_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1704954_1705545_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1705555_1706734_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1706836_1707211_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1707463_1708795_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1708861_1712092_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1713582_1714329_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1714413_1714875_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1714912_1715971_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1715933_1717763_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1717802_1718375_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1719799_1720621_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1720939_1722262_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1722621_1723257_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1723216_1724167_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1725037_1725910_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1725987_1727127_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1727485_1728742_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1728747_1729275_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1729279_1730098_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1730097_1730820_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1730841_1731156_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1731173_1732322_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1732352_1733228_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1733224_1734544_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1734616_1735813_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1735823_1737311_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1739905_1740805_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1740942_1741908_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1742006_1742957_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1743178_1744129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	1755625	1805021	4104202	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1755625_1756576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1757713_1758010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1758184_1759537_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1759679_1760696_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1762675_1763689_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|1763775_1764681_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1764837_1765182_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1765339_1765798_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1765811_1768028_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1768024_1769086_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1769114_1770089_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1770040_1770859_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1770871_1771480_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|1771654_1772050_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1772068_1773508_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1773536_1773884_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1773902_1774853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1775505_1776456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1776539_1778357_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|1778430_1779078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1779090_1780020_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|1780189_1780654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|1780901_1781582_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|1781630_1783322_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|1783337_1783889_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|1783885_1784257_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|1784369_1785206_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|1785216_1785741_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1785838_1786018_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|1786147_1787122_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|1787252_1787609_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|1787598_1788474_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|1788572_1789457_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|1789478_1790774_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|1791722_1792373_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|1792460_1793981_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|1794238_1796104_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1797149_1798100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|1798117_1798258_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|1799072_1799432_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|1799419_1800856_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|1800852_1801506_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|1801502_1802696_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|1802799_1804074_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930179.1|1804070_1805021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	1816225	1856916	4104202	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|1816225_1817176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1817274_1818225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|1818184_1818598_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|1818882_1819182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1819591_1821874_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|1822559_1824590_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|1824609_1824822_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|1825099_1825639_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|1825752_1827048_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|1827124_1828282_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|1828465_1829365_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|1829383_1830688_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|1830653_1831760_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|1831847_1832084_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|1832222_1833293_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|1833296_1834652_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|1834678_1835836_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|1835841_1836480_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|1836481_1837777_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|1837826_1839113_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|1839128_1839635_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|1839631_1840780_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|1840807_1841233_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|1841555_1844438_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|1844530_1845286_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|1846051_1847401_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|1847499_1848450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|1848548_1849499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|1849572_1850046_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|1850071_1851280_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|1851276_1852050_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|1852049_1852673_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|1852838_1853099_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|1853402_1853984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|1854050_1854305_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|1854291_1856916_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	1884699	1950248	4104202	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|1884699_1885650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1885850_1886660_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|1886784_1887735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|1887731_1888625_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|1888749_1888944_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|1888943_1889285_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|1889294_1891157_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|1891286_1891799_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|1891801_1892125_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|1892126_1892537_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|1892574_1893786_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|1893803_1894316_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|1894531_1895023_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|1895275_1897312_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|1897389_1898592_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|1898720_1899371_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|1900928_1901879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|1902449_1902662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|1902679_1903411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|1903445_1904087_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|1904079_1904748_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|1906960_1907737_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|1907758_1908916_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|1908912_1909344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|1909340_1910138_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|1910157_1910559_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|1910625_1911597_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|1911662_1912886_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|1913113_1914064_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|1914187_1916641_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|1916829_1918134_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|1918238_1918892_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|1918894_1920205_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|1920383_1920962_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|1921073_1921274_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|1921619_1922186_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|1922269_1922473_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|1922779_1923100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|1923141_1923423_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|1923497_1924754_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|1925136_1925466_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|1927036_1927858_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1927857_1928997_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|1929003_1929900_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|1929914_1931822_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|1932181_1934794_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|1934846_1937147_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|1937143_1938352_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|1938613_1938988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1938984_1939935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|1940033_1942028_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|1942087_1943053_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|1943042_1945904_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|1945906_1946413_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|1946517_1947726_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|1947727_1948666_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|1948827_1949301_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1949297_1950248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	2265902	2327250	4104202	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2265902_2266853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2266969_2267689_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2267861_2268848_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2268848_2269331_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2269334_2270618_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2270614_2271553_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2271549_2273259_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2273268_2274516_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2276126_2277416_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2278553_2279327_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2279988_2280732_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2280806_2281547_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2281742_2282579_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2282629_2283400_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2283449_2284502_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2284498_2285125_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2285121_2286156_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2286334_2287351_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2287449_2288400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2291140_2292430_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2292548_2292986_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2293029_2294238_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2294384_2294849_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2294872_2295823_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2296807_2297581_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2297577_2298576_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2298660_2299437_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2299592_2301197_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2301577_2302702_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2302828_2303452_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2303448_2305350_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2305398_2306193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2306205_2307207_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2307203_2307653_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2307702_2308551_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2308648_2309191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2309234_2310185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2310340_2310667_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2310663_2310945_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2310944_2311424_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2311420_2313049_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2313045_2313390_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2313389_2316323_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2317481_2318432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2318530_2318827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2318933_2319851_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2319855_2320569_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2320582_2321554_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2323303_2323654_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2323657_2324845_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2325283_2326006_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2326299_2327250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	2348041	2419195	4104202	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2348041_2348992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2349544_2351170_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2351219_2352254_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2352256_2353603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2353599_2355114_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2355104_2356115_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2356588_2357530_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2357538_2358507_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2360046_2361015_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2361192_2362182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2362228_2362987_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2363176_2363914_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2364012_2364963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2365147_2365930_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2365923_2366625_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2366864_2367467_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2368793_2369744_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2369740_2371297_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2371289_2372063_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2372121_2373072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2373153_2374329_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2374342_2376400_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2376396_2377422_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2377433_2378723_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2378745_2379843_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2379839_2380730_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2380726_2382811_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2382842_2384012_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2384053_2384794_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2384793_2385564_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2386419_2387205_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2387231_2389316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2389483_2391439_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2391762_2392263_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2392361_2393888_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2394025_2394913_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2394927_2395881_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2395932_2398023_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2398038_2398425_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2401118_2401922_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2403215_2404118_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2404182_2404959_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2405280_2406330_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2406453_2408124_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2408128_2408923_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2409021_2409972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2409991_2410897_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2410974_2411673_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2411832_2412777_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2412786_2414274_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2414273_2415341_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2415404_2416817_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2417002_2418223_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2418244_2419195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	2503395	2565691	4104202	tRNA,transposase	Salmonella_phage(18.18%)	54	NA	NA
WP_005012067.1|2503395_2504346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2504444_2505215_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2505211_2505883_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2505879_2506521_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2506533_2507454_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2507614_2508775_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2508816_2509767_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2510365_2510590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2510754_2512449_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2512570_2512840_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2512955_2513354_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2513364_2514321_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2514457_2515003_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2515023_2516973_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2517360_2518137_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2518142_2518535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2518956_2519907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2519903_2521001_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2521032_2521983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2523759_2525001_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2525012_2525786_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2525812_2526763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2526861_2527644_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2527732_2528959_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2529684_2531070_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2531088_2531694_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2531690_2533547_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2533543_2534344_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2534358_2535552_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2535619_2536594_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2536716_2537940_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2538050_2540255_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2540549_2541209_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2541216_2541423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2541761_2542517_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2542787_2543303_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2543575_2543893_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2544080_2544317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2544607_2545963_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2546009_2547350_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2547451_2548084_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2548083_2550453_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2550485_2551445_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2551431_2552118_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2552114_2552447_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2552562_2553513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2553509_2555576_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2555575_2555848_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2556542_2556632_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2556631_2558416_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2558439_2560605_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2560615_2561215_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2564036_2564732_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_010931070.1|2564740_2565691_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	2651808	2692477	4104202	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2651808_2652759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2652869_2653052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2653151_2653748_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2653931_2655023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2655522_2655933_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2655991_2656321_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2656338_2658756_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2658768_2659791_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2659865_2660225_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2660240_2660438_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2660773_2661724_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2661918_2662368_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2662364_2663315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2663425_2664874_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2664988_2665234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2665373_2666324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2666568_2667282_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2667404_2667632_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2667926_2668565_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2668673_2669708_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2669704_2670655_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2671070_2671595_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2671598_2671868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2672066_2673128_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2673211_2674846_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2674847_2675651_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2675679_2676639_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2676642_2678157_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2678193_2679198_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2679629_2680100_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2680135_2680747_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2680777_2681401_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2681481_2683014_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2683048_2684266_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2684333_2685365_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2685361_2686531_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2686524_2687205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2687366_2688209_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2688371_2689343_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2689514_2690393_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2690415_2691486_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2691526_2692477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	2747942	2820812	4104202	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2747942_2748359_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2748469_2749102_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2749130_2749574_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2749595_2750687_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2750741_2751542_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2751677_2752298_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2752437_2752911_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2754050_2755001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2754997_2762659_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2762899_2766946_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2767258_2767840_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2767836_2769135_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2769214_2770243_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2770503_2771454_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2771450_2772401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2772717_2773323_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2773376_2774690_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2774764_2775235_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2775234_2776023_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2776033_2777686_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2777773_2778724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2779885_2780392_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2780388_2781153_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2781168_2781453_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2781517_2782507_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2782678_2783608_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2783579_2784266_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2784299_2784845_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2784889_2786155_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2786151_2787054_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2788235_2789180_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2789274_2790792_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2790833_2792462_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2792569_2793451_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2796563_2796938_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2796962_2797301_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2797344_2798979_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2799017_2800364_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2800471_2801893_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2801962_2802547_-	nitroreductase	NA	NA	NA	NA	NA
WP_010929591.1|2802649_2803600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2803734_2804841_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2804851_2805949_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2806093_2807299_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2807305_2807827_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2807823_2808306_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2808311_2808563_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2808543_2809029_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2809164_2812626_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2812643_2813528_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2813537_2813969_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2814215_2814719_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2814796_2816197_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2816271_2817147_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2817143_2818151_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2818618_2818924_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2819014_2819605_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2819795_2820812_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	2823955	2890766	4104202	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2823955_2824906_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2825004_2825955_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2825951_2826746_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2826777_2827482_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2827556_2828357_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2828353_2828761_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2828757_2829399_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2829391_2831392_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2832652_2833984_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2833980_2834931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2836637_2836904_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2837611_2837950_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2842503_2843106_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2843202_2844492_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2844549_2845281_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2845277_2846081_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2846077_2847166_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2847162_2848092_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2848240_2849386_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2849407_2850358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2850375_2850534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2850688_2854510_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2854666_2855335_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2855339_2857013_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2857031_2858351_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2858355_2860671_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2860726_2862895_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2862891_2868072_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2868170_2868485_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2868712_2868958_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2869052_2869571_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2869670_2870876_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2870991_2872389_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2872505_2873084_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2873156_2874548_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2874715_2875666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2875946_2876567_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2876563_2876977_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2876973_2878017_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2878072_2878261_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2878270_2879035_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2879125_2879782_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2879873_2880632_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2880657_2882259_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2882459_2883464_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2883564_2883828_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2883945_2884722_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2885312_2886263_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2888646_2889759_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2889815_2890766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	2921152	2958476	4104202	transposase	Planktothrix_phage(50.0%)	36	NA	NA
WP_005012067.1|2921152_2922103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2922120_2922270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2922223_2923120_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2925397_2927623_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2927787_2928876_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2928832_2929486_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2929533_2930331_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2930862_2931813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2931893_2933042_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2933098_2934049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2934147_2934453_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2934481_2934916_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2934917_2936162_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2936158_2936869_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2936883_2937795_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|2937982_2938147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2938164_2939115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|2939206_2939611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2939607_2940066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2940072_2940981_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2940977_2941844_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2941830_2942658_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2942668_2943796_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2944873_2946112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2946153_2947416_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2947422_2948175_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2948226_2948412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2948687_2949152_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2949183_2949843_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2949987_2952096_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2952092_2953043_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2953146_2953767_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2953870_2954611_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2955745_2956870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2956915_2957284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2957525_2958476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	3026979	3099473	4104202	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_005012808.1|3026979_3027930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3027972_3029148_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029369_3031160_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031172_3032834_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3032846_3035552_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3035844_3037599_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3037595_3038222_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038218_3039070_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3039199_3041260_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041446_3042061_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042206_3042458_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3042527_3043910_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3043906_3047086_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_077090957.1|3047893_3048811_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3048862_3049594_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3049653_3050226_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3051734_3052751_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3052888_3053938_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054042_3054993_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3055088_3055814_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3056024_3056405_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3056710_3057583_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3057590_3057971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3058124_3059399_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3060886_3061795_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3062592_3063657_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3065493_3066528_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3066717_3067359_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3067441_3069268_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3069511_3070441_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3070440_3071190_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3071261_3072176_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3072195_3073341_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3073401_3074313_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3074393_3075344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075442_3076027_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076061_3077051_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077047_3077989_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3077985_3079206_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079248_3079563_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3079754_3080114_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080115_3081831_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082018_3082690_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3082704_3084033_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084029_3084929_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085015_3086101_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3086093_3087224_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3087226_3089908_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090278_3090860_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3090985_3091711_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3091707_3092385_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3092600_3093782_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3094554_3094737_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3094766_3095717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3095846_3096239_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3096515_3097427_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3097551_3098526_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3098522_3099473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	3230956	3299959	4104202	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_010930048.1|3230956_3231907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3231903_3232923_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3232932_3235641_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3235788_3236445_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3236543_3237494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3237641_3238535_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3238734_3240429_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3240463_3241390_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3241458_3242556_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3242574_3243438_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243449_3244232_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244228_3245347_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245343_3246876_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3246916_3247924_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248068_3248791_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3248806_3249829_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250145_3250880_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3250964_3252710_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3252706_3253459_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3253503_3254460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3254548_3255115_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255122_3255983_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256012_3256741_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3256772_3257456_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258293_3259208_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259272_3260181_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260271_3261696_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3261697_3263020_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263016_3265155_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265232_3270353_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270453_3270762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3270831_3271389_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271404_3272886_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3272940_3274794_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3275056_3276394_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276428_3278426_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278443_3280492_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3280622_3281489_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3281757_3282723_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3282837_3283986_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3284410_3284722_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3284755_3285016_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285165_3286299_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286369_3287506_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3287671_3288466_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3288528_3288972_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289087_3290038_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3290160_3290568_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3290640_3292836_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293057_3294008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3293967_3294492_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3294623_3295595_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3295714_3298159_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298174_3298765_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3299008_3299959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	3315405	3415518	4104202	tRNA,transposase,protease,terminase,tail	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005013747.1|3315405_3316356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317087_3317465_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3317449_3318151_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318294_3318987_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3318986_3320090_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320199_3322572_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3322568_3324128_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324152_3324950_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3324981_3326127_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326231_3327674_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3327676_3328906_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331043_3331994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333123_3333681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3333656_3334007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334175_3334970_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3334966_3336016_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336015_3336705_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3336791_3337289_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337320_3338637_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3338653_3339628_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3339664_3340123_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340122_3340803_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3340805_3341234_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341286_3343017_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343082_3343655_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3343635_3344322_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3344677_3345349_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3345677_3345899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3345898_3346180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346176_3346692_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3346691_3347243_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347221_3347464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3347468_3348281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348280_3348544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3348584_3348782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3348762_3349179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349183_3353140_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353132_3353522_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3353518_3354052_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354119_3354479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3354488_3357101_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357126_3357417_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357434_3357764_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3357773_3358292_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3358546_3359047_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359054_3359477_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3359473_3359872_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3359868_3360264_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3360263_3360452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3360465_3360948_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361010_3361262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3361936_3362887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363315_3363918_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364040_3364283_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364288_3365344_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365372_3366791_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3366793_3368071_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368057_3368543_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3369182_3370133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3370150_3370372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3370389_3371079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371071_3371323_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3371877_3372489_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3372560_3372767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373018_3373969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3374067_3375141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3375308_3376103_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3376142_3376667_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3376659_3378402_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3378611_3379370_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3379372_3380080_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3380096_3380978_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3380988_3381747_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3381715_3382471_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3382540_3383959_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3383980_3384631_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3384764_3385100_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3385188_3386139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3386215_3388036_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3388040_3389114_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3389236_3390205_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3390278_3391190_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3391208_3391781_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3391861_3392410_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3392409_3393999_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3394068_3394308_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3394348_3395374_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3395439_3396621_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3396717_3397170_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3397179_3398520_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3398836_3399874_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3400255_3400615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3400698_3401640_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3401714_3402665_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3402958_3404053_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3404143_3405016_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3405037_3405877_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3405952_3407470_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3407566_3408667_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3408683_3409106_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3409128_3409341_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3409387_3410308_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3410490_3411240_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3411242_3411572_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3411859_3413212_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3413223_3413607_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3413668_3414469_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3414567_3415518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	3487419	3533560	4104202	transposase	Bacillus_phage(20.0%)	45	NA	NA
WP_005015810.1|3487419_3488370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998034.1|3488468_3489419_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813004.1|3489500_3490148_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_010931513.1|3490162_3491590_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	40.0	6.5e-19
WP_003813001.1|3491755_3492361_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_014486106.1|3492396_3492720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812997.1|3492741_3493008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812995.1|3493337_3493574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812993.1|3493590_3493848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931515.1|3495461_3496436_-	L-histidine N(alpha)-methyltransferase	NA	NA	NA	NA	NA
WP_010931516.1|3496767_3497367_+	membrane protein	NA	NA	NA	NA	NA
WP_010928587.1|3497354_3498785_+	cardiolipin synthase B	NA	NA	NA	NA	NA
WP_010929584.1|3498794_3499745_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931517.1|3499843_3501505_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA	NA
WP_023853348.1|3501580_3502807_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_010931519.1|3502948_3503896_-	AEC family transporter	NA	NA	NA	NA	NA
WP_010931520.1|3504020_3504464_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010931521.1|3504803_3505415_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_024000927.1|3505967_3508397_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	31.6	3.0e-64
WP_003812973.1|3508521_3509259_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_010931523.1|3509312_3510557_+	cystathionine gamma-synthase family protein	NA	NA	NA	NA	NA
WP_003812970.1|3510597_3511278_+	Fe2+-dependent dioxygenase	NA	Q5GQB0	Synechococcus_phage	29.1	4.9e-17
WP_003812968.1|3511598_3511871_+	HU family DNA-binding protein	NA	B5TA87	Burkholderia_phage	57.8	1.1e-20
WP_010931524.1|3512367_3513168_+	energy transducer TonB	NA	NA	NA	NA	NA
WP_010931525.1|3513169_3514147_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_003812950.1|3514146_3514614_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812947.1|3514696_3515368_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812944.1|3515426_3516545_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	26.2	2.6e-15
WP_003820366.1|3516541_3518452_+	potassium transporter Kup	NA	A7K9V6	Acanthocystis_turfacea_chlorella_virus	32.4	5.4e-69
WP_003820367.1|3518536_3519874_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	81.7	1.4e-55
WP_003812938.1|3520024_3520966_-	ornithine carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	26.4	1.1e-17
WP_010931526.1|3521017_3522199_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.1	3.4e-21
WP_003812933.1|3522408_3522699_+	DUF3579 domain-containing protein	NA	NA	NA	NA	NA
WP_010931527.1|3522703_3523612_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931528.1|3523723_3524449_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931529.1|3524595_3525549_-	2-hydroxyacid dehydrogenase	NA	Q89388	Paramecium_bursaria_Chlorella_virus	26.6	7.7e-16
WP_003812927.1|3525651_3526623_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003812923.1|3526703_3526895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247473.1|3527102_3528020_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_033446154.1|3528148_3528853_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077069004.1|3528951_3529902_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818466.1|3529898_3530798_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_010929878.1|3530927_3531563_+	LysE family transporter	NA	NA	NA	NA	NA
WP_005013747.1|3531559_3532510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|3532609_3533560_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	3698862	3837157	4104202	tRNA,transposase,integrase	uncultured_Mediterranean_phage(10.0%)	122	3748874:3748891	3793514:3793531
WP_010931534.1|3698862_3700110_-|tRNA	bifunctional tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB/ribosomal protein alanine acetyltransferase RimI	tRNA	NA	NA	NA	NA
WP_003813882.1|3700239_3700974_+	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	36.3	1.3e-34
WP_077069199.1|3701017_3701950_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_019247227.1|3701690_3702404_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_003813886.1|3702466_3703015_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813887.1|3703070_3703589_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010931533.1|3703656_3704484_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_050839498.1|3704373_3705831_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931532.1|3705790_3706741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807278.1|3706938_3707430_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3707476_3708442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3709575_3710817_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3710930_3711947_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3711981_3712458_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3712600_3713509_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3713622_3714735_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3714835_3715321_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3715457_3716708_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3716809_3717322_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3717420_3718371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3718436_3719375_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3719397_3720024_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3720020_3720677_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3720673_3721276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3721282_3721870_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3722050_3722620_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3722690_3724010_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3724116_3724308_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3724559_3725849_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3726003_3726999_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3727083_3727758_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3727754_3728705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3728866_3730108_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3730104_3731049_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3731167_3732118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3732077_3733007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3733060_3733396_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3733440_3734205_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3734228_3734969_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3734976_3736530_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3736564_3737542_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3737814_3738396_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3738447_3745350_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3745796_3745928_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3746193_3746400_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3747404_3748064_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3748091_3749237_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3748874:3748891	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3749377_3749713_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3749787_3750648_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3750911_3751613_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3751782_3752178_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3752287_3753238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3753248_3753890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3754056_3754299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3754397_3755348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3755383_3755851_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3756084_3756462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3756458_3756641_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3756644_3757631_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3757627_3758275_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3758332_3758860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3758896_3760081_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3760091_3760433_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3760545_3760746_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3760742_3761732_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3763218_3765189_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3765430_3765829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3765837_3766761_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3767218_3768169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3768399_3770091_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3770139_3770412_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3770408_3770780_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3770875_3771010_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3771415_3772825_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3772827_3773937_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3774031_3776485_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3776603_3777395_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3777514_3778942_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3778980_3779952_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3780370_3781534_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3781621_3782467_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3784023_3784974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3785528_3785903_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3785977_3787036_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3787059_3788010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3790891_3792061_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3792161_3793769_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3793514:3793531	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3793815_3795837_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3795865_3796111_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3796124_3797315_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3797510_3798476_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3798498_3799638_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3799849_3800812_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3800935_3802960_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3803156_3805400_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3805678_3806137_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3807064_3809686_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3809749_3812377_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3812528_3813593_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3813592_3814363_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3814371_3815205_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3815217_3815997_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3816070_3817504_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3817531_3818290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3818345_3820196_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3820289_3820766_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3820782_3821703_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3821809_3822310_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3822683_3823376_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_023853374.1|3823389_3823530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162268689.1|3823490_3823667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3823684_3824635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3824631_3828405_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3828741_3830631_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3830642_3831536_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3831639_3832437_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3832433_3833285_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3833346_3834027_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3834063_3834390_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3834390_3835350_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3835370_3835859_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3836140_3837157_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011732	Bordetella pertussis strain I331 chromosome, complete genome	4104202	4003270	4068182	4104202	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4003270_4003756_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4003844_4003982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003974_4004955_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4005221_4006031_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4006070_4006751_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4006744_4007203_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4007214_4007577_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4007659_4008343_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4008398_4008707_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4008725_4009040_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4009036_4011511_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4011518_4012910_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4012906_4013092_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4013070_4013772_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4013768_4014590_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4014570_4015695_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4015687_4016707_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4016912_4017803_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4018047_4018839_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4018921_4019296_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4019273_4020683_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4020675_4022058_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4022392_4023997_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4024074_4025046_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4025056_4025983_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4026373_4027324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027493_4028720_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028919_4029786_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029778_4030741_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030841_4031792_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031890_4032841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032939_4033890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033886_4035380_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035376_4038484_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038480_4041549_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041545_4042796_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042976_4043729_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4043770_4044415_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4044423_4045404_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045503_4046247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4046329_4046677_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046774_4047617_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047661_4048549_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048575_4048764_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048861_4050319_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050305_4051832_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051850_4052318_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4052317_4053340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4053460_4054201_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4054255_4055356_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055357_4056548_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056667_4057684_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058002_4058674_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058670_4059579_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059790_4060438_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4064298_4065366_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065376_4066186_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066275_4067049_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4067049_4067214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4067231_4068182_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
