The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	27282	70036	4106397	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	77634	136108	4106397	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	164893	219510	4106397	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	225502	287973	4106397	protease,tRNA,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	391906	449415	4106397	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|418574_418847_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	591469	652660	4106397	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592916_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625096_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640146_641580_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648342_649224_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	657984	704175	4106397	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692894_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	710341	764271	4106397	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762790_763219_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	815864	887877	4106397	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|815864_816815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|816913_817570_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|817717_820426_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|820435_821455_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|821451_822402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|822500_822989_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|822985_823669_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|823698_827154_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|827189_828050_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|828178_829096_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|829233_830214_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|830273_832064_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|832060_832837_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|832846_833365_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|833477_835748_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|835959_838191_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|838491_838821_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|838837_840322_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|840332_841835_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|841831_843844_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|843861_844170_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|844166_844814_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|844831_845320_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|845341_846415_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|846414_848742_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|848757_850125_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|850121_850616_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|850661_851918_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|851920_852544_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|852618_853095_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|853131_853491_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|853679_854837_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|855149_856100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856117_856672_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856673_857108_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857104_857539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857522_858326_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858342_859158_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859154_859970_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860116_860818_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860845_862804_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862886_863837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864057_864726_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864849_865956_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865968_869082_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869078_870572_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870586_871258_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871301_871796_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871936_872584_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872687_874736_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874732_876745_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876770_878105_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878213_879206_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879272_881357_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881381_882353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882481_883513_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883516_884668_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884838_885762_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885839_886664_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	895511	958591	4106397	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|895511_897743_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904409_905129_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905249_907409_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907499_907769_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|908062_908590_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908608_909388_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909555_910572_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910644_911136_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911146_912862_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917956_918103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918211_918379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939426_940377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940373_940757_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940811_942626_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942775_943603_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943648_944629_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944625_944838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944834_946016_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946179_946914_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946915_949528_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949663_951577_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952192_952603_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952700_953786_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953884_954835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954831_955806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955930_956842_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957118_957511_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957640_958591_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	978013	1048280	4106397	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|978013_978964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979044_979956_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980016_981162_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981181_982096_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982167_982917_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982916_983846_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984089_985916_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985998_986640_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|986862_987864_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989700_990765_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991562_992471_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993958_995233_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995386_995767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995774_996647_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996952_997333_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997543_998269_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998364_999315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999419_1000469_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000606_1001623_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003131_1003704_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003763_1004495_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004546_1005464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006271_1009451_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009447_1010830_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010899_1011151_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011296_1011911_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012097_1014212_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014287_1015139_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015135_1015762_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015758_1017513_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017805_1020511_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020523_1022185_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022197_1023988_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024209_1025385_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025427_1026378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026476_1027217_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027411_1029448_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029465_1030476_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030593_1031787_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031816_1032590_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032586_1033777_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033802_1034741_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034737_1037086_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037240_1037882_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037985_1039119_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039211_1039364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039395_1039944_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039962_1040448_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040625_1041564_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041566_1041884_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041929_1042874_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044554_1045205_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045258_1045594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045590_1046451_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046467_1046749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046822_1047086_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047329_1048280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	1060498	1117880	4106397	holin,protease,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1060498_1061515_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1062303_1063353_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063349_1064993_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064989_1065877_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066017_1066491_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066480_1067503_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067499_1068927_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069864_1070881_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071213_1072149_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072198_1074079_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074145_1074490_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074634_1075771_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075767_1076841_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076998_1078435_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078525_1079167_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079502_1080519_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080851_1083599_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083665_1085087_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085350_1086067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086151_1086469_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110495_1110747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112196_1113147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113727_1114435_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	1157579	1219863	4106397	tRNA,transposase	Erysipelothrix_phage(33.33%)	49	NA	NA
WP_005012067.1|1157579_1158530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930198.1|1158628_1159579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1159677_1160301_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1160473_1162756_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162910_1165607_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165732_1166221_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168631_1171502_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171547_1172762_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172991_1174419_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174516_1175608_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175620_1176379_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176466_1177369_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177365_1178316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178445_1179429_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179483_1180206_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181684_1183040_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183120_1185496_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1185660_1187736_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1187797_1188598_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188699_1189662_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189649_1190405_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190512_1192150_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192217_1192955_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193057_1193633_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193805_1194342_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1194344_1194689_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194704_1195550_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1195588_1196968_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197045_1197927_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198025_1198976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198972_1199383_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199490_1200345_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200337_1201300_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201345_1202470_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202575_1203454_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203578_1204358_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204511_1205933_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206367_1208065_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208291_1209233_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209559_1210306_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210313_1211240_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211361_1212279_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212318_1213272_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213296_1213875_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215548_1216157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216234_1216588_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216671_1217661_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_076879566.1|1217863_1218814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1218912_1219863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	1318999	1387486	4106397	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1318999_1319950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320718_1321357_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322246_1322693_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1322774_1323476_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323476_1324244_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324240_1325479_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325478_1326405_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326507_1327623_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327638_1328589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328942_1329524_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329520_1330354_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330564_1331878_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332054_1332936_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332955_1333807_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333859_1334948_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335058_1336186_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336420_1337032_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337130_1338081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338302_1338680_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338827_1339325_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339321_1339849_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339982_1340798_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1340810_1341992_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342039_1342933_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343059_1343530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343655_1344483_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344511_1345288_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345284_1345560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345574_1346039_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346050_1346752_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1346861_1347362_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347444_1348623_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350250_1350586_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350773_1352222_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352279_1352624_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352730_1353270_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353362_1354313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1354411_1354819_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355051_1355483_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1355664_1356069_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357305_1357629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357631_1358519_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358551_1358977_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359048_1359402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359641_1360148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360186_1361518_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361577_1362393_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362389_1363244_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366306_1368850_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370216_1371971_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371967_1374088_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374092_1376288_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376284_1379626_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382428_1383379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383444_1383624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383740_1384496_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384482_1385628_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386535_1387486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	1447977	1503465	4106397	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447977_1448928_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450129_1450576_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450568_1452044_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452040_1452796_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452788_1453799_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453788_1455465_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455777_1456110_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456123_1456519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456528_1456855_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1456851_1457178_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457104_1458127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458123_1458474_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458521_1458950_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458957_1460331_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460471_1460849_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461111_1462419_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462479_1463310_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463306_1463795_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463836_1465357_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465400_1465877_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466680_1469278_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469307_1470129_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470855_1471605_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471788_1472667_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472764_1473481_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473495_1474056_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474222_1474987_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475006_1475864_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475860_1477060_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477099_1478434_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478486_1480823_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480948_1481512_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481520_1482612_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482683_1483139_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483139_1483934_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483930_1485112_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485098_1485704_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485700_1486474_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486485_1487313_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487474_1489838_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489905_1490625_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490748_1491174_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1491208_1492159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492276_1493203_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493268_1494426_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494406_1494874_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1495021_1495972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495988_1496423_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496412_1496763_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496959_1498114_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1498110_1499283_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499330_1500224_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500269_1500707_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500766_1501456_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501465_1502416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502514_1503465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	1598162	1666248	4106397	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1598162_1598651_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598768_1599347_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599452_1599821_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599919_1600870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600876_1601989_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602675_1603878_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1603913_1604060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1604081_1606742_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1606754_1610159_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610826_1613052_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613098_1613425_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613475_1614084_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614182_1615133_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615202_1615967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1615963_1616563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616666_1617518_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617577_1618204_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618200_1619151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619249_1620362_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620351_1621353_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621458_1622970_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622966_1624271_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624382_1624943_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625210_1625765_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626220_1626436_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626690_1629288_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629284_1630472_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1631130_1631745_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1631833_1632961_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632972_1633878_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634770_1635721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635902_1636655_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636723_1637383_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637379_1638108_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638120_1640400_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640424_1640628_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640669_1641302_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641437_1642355_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642351_1643065_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643302_1644073_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644077_1644677_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644921_1646412_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646470_1646755_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1646892_1647048_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1647320_1648247_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648383_1649124_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649290_1650667_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650848_1651754_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653405_1655208_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1655334_1655976_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656074_1657025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1657046_1658267_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1658452_1659865_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1659928_1660996_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1660995_1662483_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1662492_1663437_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1663596_1664295_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1664372_1665278_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1665297_1666248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	1702197	1757788	4106397	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1702197_1703148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1703206_1703980_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1703972_1705529_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1705525_1706476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1707802_1708405_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1708644_1709346_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1709339_1710122_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1710306_1711257_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1711355_1712093_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1712282_1713041_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713087_1714077_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1714254_1715223_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1716762_1717731_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1717739_1718681_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1719154_1720165_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1720155_1721670_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1721666_1723013_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1723015_1724050_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724099_1725725_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1726277_1727228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1727332_1728280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1728333_1730148_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1730140_1730815_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1730944_1734019_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1734032_1734332_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1734646_1735270_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1735513_1736383_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1736360_1737305_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1737390_1738317_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1738429_1739209_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1739199_1740396_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1740426_1741377_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1741598_1742288_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1742352_1743108_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1743159_1744152_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1744161_1745115_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1745230_1746193_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1747594_1748023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1748019_1748970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1749263_1750001_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1750424_1751612_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1751615_1751996_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1753715_1754687_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1754700_1755414_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1755418_1756336_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1756442_1756739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1756837_1757788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2077957	2135236	4106397	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|2077957_2078908_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|2079006_2081607_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|2081713_2082718_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|2082826_2084167_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|2084207_2085236_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|2085431_2085977_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|2085973_2086534_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|2086632_2087583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|2087620_2088208_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|2088225_2088609_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|2089968_2091261_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|2091395_2092436_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|2092533_2093550_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|2093817_2094465_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|2094590_2095349_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|2095333_2096113_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|2096130_2097015_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|2097011_2097791_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|2097895_2098495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|2098783_2099536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|2099654_2101055_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|2101078_2101477_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|2101652_2101853_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|2101991_2102720_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|2102853_2104269_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|2104272_2105136_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|2105148_2105898_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|2106080_2108096_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|2108077_2108746_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|2109520_2110471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|2110619_2110958_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|2111015_2111177_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|2111208_2111409_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|2111674_2114248_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|2114318_2116868_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|2119418_2119907_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2119998_2121150_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|2121203_2122025_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2122063_2123293_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|2123421_2123862_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|2123972_2124923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|2124919_2125393_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|2125554_2126493_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|2126494_2127703_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|2127807_2128314_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|2128316_2131178_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|2131167_2132133_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|2132192_2134187_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|2134285_2135236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2186485	2245755	4106397	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_077070288.1|2186485_2187436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2187560_2188370_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2188570_2189521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2190794_2192012_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2193068_2193971_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2194047_2194920_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2195050_2195419_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2195476_2196523_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2196718_2197975_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2197979_2199317_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2199466_2200423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2200525_2201458_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2201573_2201894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2201886_2202246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2202293_2203868_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2203920_2204865_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2204882_2205713_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2205705_2207340_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2207336_2208692_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2209598_2211176_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2211179_2212454_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2212551_2212926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2214641_2215775_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2215812_2216418_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2216414_2217233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2217304_2219929_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2219915_2220170_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2220236_2220818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2221121_2221382_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2221547_2222171_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2222170_2222944_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2222940_2224149_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2224174_2224648_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2224721_2225672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2225770_2226721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2226819_2228169_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2228934_2229690_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2229782_2232665_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2232987_2233413_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2233440_2234589_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2234585_2235092_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2235098_2236394_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2236452_2237739_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2237740_2238379_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2238381_2239542_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2239568_2240924_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2240927_2241998_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2242136_2242373_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2242460_2243567_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2243532_2244837_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2244855_2245755_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 20
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2255995	2300318	4106397	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|2255995_2256946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2257044_2257995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2258194_2259280_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2259295_2260057_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2260053_2261013_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2261075_2261576_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2261608_2262352_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2262447_2262687_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2262700_2262853_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2262938_2264429_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2264520_2265459_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2265455_2265632_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2265634_2266297_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2267918_2268062_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2268058_2269033_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2269199_2270150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2270146_2271421_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2271524_2272718_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2272714_2273368_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2273364_2274801_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2274788_2275148_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2275962_2276103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2276120_2277071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2278116_2279982_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2280239_2281760_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2281847_2282498_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2283446_2284742_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2284763_2285648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2285746_2286622_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2286611_2286968_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2287098_2288073_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2288202_2288382_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2288479_2289004_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2289014_2289851_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2289963_2290335_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2290331_2290883_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2290898_2292590_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2292638_2293319_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2293566_2294031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2294200_2295130_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2295142_2295790_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2295863_2297681_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2297764_2298715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2299367_2300318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2330091	2394460	4106397	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2330091_2331042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2331263_2332214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2332312_2333278_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2333415_2334315_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2336909_2338397_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2338407_2339604_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2339676_2340996_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2340992_2341868_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2341898_2343047_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2343064_2343379_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2343400_2344123_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2344122_2344941_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2344945_2345473_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2345478_2346735_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2347093_2348233_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2348310_2349183_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2350053_2351004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2350963_2351599_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2351958_2353281_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2353599_2354421_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2355845_2356418_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2356457_2358287_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2358249_2359308_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2359345_2359807_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2359891_2360638_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2362128_2365359_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2365425_2366757_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2367009_2367384_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2367486_2368665_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2368675_2369266_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2369376_2370183_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2370208_2371003_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2372003_2372978_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2373136_2373649_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2373805_2374777_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2376521_2377328_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2377324_2378626_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2378576_2379341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2379454_2380225_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2380309_2381497_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2381569_2381944_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2382044_2383307_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2383303_2384161_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2384333_2385335_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2385786_2386737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2388252_2389452_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2389820_2390057_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2390120_2390288_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2390401_2392207_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2392460_2393411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2393509_2394460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2543122	2607338	4106397	protease,tRNA,transposase	Salmonella_phage(16.67%)	60	NA	NA
WP_004566381.1|2543122_2544610_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2544647_2545706_-	MucB/RseB C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_023853242.1|2545705_2546206_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2546218_2546818_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2546814_2547315_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2547316_2548546_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2548735_2548975_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2549157_2549910_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2549911_2550847_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2550928_2551915_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2551914_2552973_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2553029_2553212_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2553263_2553857_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2553965_2554565_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2554561_2555272_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2555273_2556101_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2557917_2559159_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2559170_2559944_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2559970_2560921_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2561019_2561802_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2561890_2563117_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2563842_2565228_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2565246_2565852_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2565848_2567705_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2567701_2568502_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2568516_2569710_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2569777_2570752_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2570874_2572098_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2572208_2574413_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2574707_2575367_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2575374_2575581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2575919_2576675_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2576690_2576852_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2576945_2577461_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2577733_2578051_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2577995_2578640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2578765_2580121_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2580167_2581508_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2581609_2582242_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2582241_2584602_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2584643_2585603_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2585589_2586276_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2586272_2586605_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2586720_2587671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2587769_2588720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2588716_2590783_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2590782_2591055_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2591749_2591839_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2591838_2593623_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2593646_2595812_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2595822_2596422_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2599243_2599939_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2599947_2600898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015028.1|2600996_2602238_-	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_003814057.1|2602387_2603368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814059.1|2603566_2604823_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814061.1|2605025_2605451_+	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814063.1|2605492_2605855_-	cytochrome c	NA	NA	NA	NA	NA
WP_003814065.1|2605867_2606221_-	cytochrome c	NA	NA	NA	NA	NA
WP_005013747.1|2606387_2607338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2687015	2727684	4106397	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2687015_2687966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2688076_2688259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2688358_2688955_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2689138_2690230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2690729_2691140_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2691198_2691540_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2691545_2693963_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2693975_2694998_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2695072_2695432_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2695447_2695645_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2695980_2696931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2697125_2697575_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|2697571_2698522_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2698632_2700081_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2700195_2700477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2700580_2701531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2701775_2702489_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2702611_2702839_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2703133_2703772_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2703880_2704915_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2704911_2705862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2706277_2706802_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2706805_2707075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2707273_2708335_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2708418_2710053_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2710054_2710858_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2710886_2711846_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2711849_2713364_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2713400_2714405_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2714836_2715307_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2715342_2715954_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2715984_2716608_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2716688_2718221_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2718255_2719497_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2719540_2720572_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2720568_2721738_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2721731_2722412_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2722573_2723416_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2723578_2724550_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2724721_2725600_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2725622_2726693_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2726733_2727684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2783149	2856019	4106397	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2783149_2783566_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783676_2784309_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784337_2784781_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784802_2785894_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785948_2786749_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786884_2787505_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787644_2788118_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789257_2790208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790204_2797866_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798106_2802153_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802465_2803047_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803043_2804342_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804421_2805450_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805710_2806661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806657_2807608_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807924_2808530_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808583_2809897_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809971_2810442_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810441_2811230_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811240_2812893_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812980_2813931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815092_2815599_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815595_2816360_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816375_2816660_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816724_2817714_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817885_2818815_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818786_2819473_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819506_2820052_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820096_2821362_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821358_2822261_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823442_2824387_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824481_2825999_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826040_2827669_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827776_2828658_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831770_2832145_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832169_2832508_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832551_2834186_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834224_2835571_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835678_2837100_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837169_2837754_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837856_2838807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838941_2840048_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840058_2841156_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841300_2842506_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842512_2843034_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843030_2843522_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843518_2843770_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843750_2844236_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844371_2847833_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847850_2848735_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848744_2849176_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849422_2849926_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850003_2851404_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851478_2852354_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852350_2853358_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853825_2854131_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854221_2854812_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855002_2856019_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2859162	2925973	4106397	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2859162_2860113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860211_2861162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861158_2861953_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861984_2862689_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862763_2863564_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863560_2863968_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863964_2864606_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864598_2866599_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867859_2869191_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869187_2870138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871844_2872111_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872818_2873157_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877710_2878313_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878409_2879699_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879756_2880488_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880484_2881288_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881284_2882373_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882369_2883299_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883447_2884593_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884614_2885565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885895_2889717_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889873_2890542_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890546_2892220_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892238_2893558_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893562_2895878_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895933_2898102_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898098_2903288_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903377_2903692_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903919_2904165_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904259_2904778_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904877_2906083_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906198_2907596_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907712_2908291_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908363_2909755_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909922_2910873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911153_2911774_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911770_2912184_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912180_2913224_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913279_2913468_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913477_2914242_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914332_2914989_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915080_2915839_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915864_2917466_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917666_2918671_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918771_2919035_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919152_2919929_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920519_2921470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923853_2924966_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925022_2925973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	2956359	3000050	4106397	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2956359_2957310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957430_2958327_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960604_2962830_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962994_2964083_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964039_2964693_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964740_2965538_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966069_2967020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967094_2968249_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968305_2969256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969354_2969660_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969688_2970123_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970124_2971369_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971365_2972076_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972090_2973002_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973364_2973769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973765_2974224_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974230_2975139_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975135_2976002_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975988_2976816_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976826_2977954_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979031_2980270_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980311_2981574_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981580_2982333_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982384_2982570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982845_2983310_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983341_2984001_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984145_2986254_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986250_2987201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987304_2987925_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988016_2988769_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989903_2991028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991073_2991442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991683_2992634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993669_2994212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994597_2995548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995544_2996510_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996579_2997416_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997928_2999038_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999099_3000050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	3381046	3434787	4106397	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381046_3381997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382401_3383046_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383070_3383655_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383755_3384373_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384375_3386091_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386087_3386396_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386412_3387030_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387074_3387377_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387477_3388332_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388519_3388744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388913_3389186_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389603_3390011_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390380_3391175_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391275_3392511_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392579_3393596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393607_3394984_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394980_3396177_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396173_3397712_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397708_3398968_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400908_3401859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402625_3403720_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403712_3405047_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405000_3405684_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405709_3406873_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406869_3407871_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407870_3408743_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408739_3409489_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409485_3410277_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410273_3411413_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411688_3412474_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412507_3413290_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413293_3413683_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414822_3415686_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415721_3416810_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416806_3417757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069072.1|3418110_3421089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422015_3422894_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424842_3425793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425789_3426257_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426299_3427070_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427090_3427891_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427901_3429311_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429405_3430191_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430430_3431447_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431554_3431947_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432084_3432765_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432769_3433741_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433836_3434787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	3440942	3500242	4106397	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440942_3442706_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442817_3443696_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443808_3444624_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444627_3444879_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010931363.1|3444963_3445980_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446310_3446532_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448892_3449810_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450307_3451516_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451595_3453167_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453284_3454220_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454408_3455353_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_077069073.1|3455920_3461638_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461643_3462771_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462826_3463453_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463724_3464741_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464836_3465547_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465543_3466533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466628_3468260_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468262_3469000_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469155_3470028_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470296_3471517_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471513_3472173_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472244_3472877_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472906_3473425_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473435_3474545_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474591_3475446_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475447_3476350_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477572_3478523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3480279_3481269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481265_3481424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481444_3482233_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482229_3483261_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483279_3483843_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483898_3485419_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485682_3486387_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486394_3487132_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487237_3487612_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487654_3488944_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488940_3490110_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490106_3490946_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491005_3491941_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491953_3492904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3493002_3493965_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493996_3494356_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494480_3495383_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495384_3497157_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497191_3497968_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499291_3500242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	3515180	3573253	4106397	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515180_3516131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516259_3517393_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517436_3518342_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518344_3520045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520041_3520962_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520969_3521947_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522005_3523040_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3525014_3525251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525377_3526241_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526329_3527151_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527230_3527968_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527964_3528957_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529070_3529733_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529777_3530926_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533249_3534200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534540_3535491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535589_3536540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536836_3537334_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537376_3539152_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539159_3540026_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540032_3540767_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541936_3542731_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543020_3543611_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543644_3544973_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545047_3546193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546304_3547303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547265_3547700_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549216_3550101_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550097_3551303_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551299_3552160_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552272_3554063_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554103_3554769_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554769_3555078_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555243_3556530_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557963_3558914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560865_3562080_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562185_3563175_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563171_3563780_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563792_3564422_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564418_3565039_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565070_3565862_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566713_3567169_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567187_3568114_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568167_3569454_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570384_3571257_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571253_3572204_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572302_3573253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011729	Bordetella pertussis strain I289 chromosome, complete genome	4106397	4028568	4082000	4106397	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4028568_4029519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029688_4030915_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031114_4031981_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031973_4032936_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033036_4033987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034085_4035036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035134_4036085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036081_4037575_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037571_4040679_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040675_4043744_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043740_4044991_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045171_4045933_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045965_4046616_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046618_4047458_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047698_4048442_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048524_4048872_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048969_4049812_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049856_4050744_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050770_4050959_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051056_4052514_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052500_4054027_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054045_4054513_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054512_4055535_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055655_4056375_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056450_4057551_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057552_4058743_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058862_4059879_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060197_4060869_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060865_4061774_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061985_4062633_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066484_4067561_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067571_4068381_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068470_4069244_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069426_4070377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070265_4071288_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071277_4072432_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072471_4073884_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074008_4074875_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074876_4075701_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075697_4076459_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076539_4077226_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077399_4078407_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078403_4079183_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079240_4080503_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081049_4082000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
