The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	0	59497	4110433	transposase,tRNA	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077068995.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	70134	123122	4110433	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	165944	226455	4110433	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165944_166895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168338_169241_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169218_169848_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170130_171561_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171594_172224_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172272_173880_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173904_174588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174669_175146_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175352_176303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177418_177946_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178037_178853_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178913_179648_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179685_181764_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182013_182286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182387_183473_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183476_185381_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185377_189052_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189112_189676_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189683_190106_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190133_190553_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190581_191028_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191154_191652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191806_194077_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194152_195358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195456_196407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196509_197145_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197141_198035_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198429_199530_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199611_199986_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200045_202910_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203054_203795_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203864_205076_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205104_206073_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206686_207637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207793_208117_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208221_209262_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209267_210047_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210092_210389_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210414_210690_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210746_211391_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211390_212077_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212275_213058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213108_213834_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213865_215215_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215326_216259_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216716_219512_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220105_222949_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223119_223839_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223877_224426_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224580_225480_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225504_226455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	234387	287975	4110433	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234387_235338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235424_236375_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236371_237322_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237420_238218_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239167_239578_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240599_241343_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241386_242430_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242600_244703_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246113_247070_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247088_247580_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247576_248932_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248932_249631_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249627_250329_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250581_251631_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251736_252678_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252674_254564_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254650_255289_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255431_256817_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256747_257284_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257435_258827_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258843_259824_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259959_260943_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261007_261907_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262013_263768_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263775_264900_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264913_265894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266624_267575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268134_268680_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268805_270383_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270398_271553_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271566_271692_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271688_273440_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273436_275116_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275178_275727_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276869_277148_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278191_279142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279128_279344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279419_279581_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280247_280697_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280706_281318_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281476_282325_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282350_283733_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283797_284439_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284578_285037_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285061_285838_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285891_287028_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287024_287975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	391908	449417	4110433	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391908_392859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392995_393913_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393909_394158_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394154_395360_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395432_396428_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396450_397671_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397667_398312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400042_400852_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401156_402110_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402208_403192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403118_403820_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403868_404639_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404635_405814_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405981_407688_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407684_408581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408621_410211_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410260_411253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411321_411921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412381_413362_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413437_414388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414476_415391_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415387_416047_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416136_417060_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417065_417521_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417517_418621_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418579_418849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418808_420428_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420424_421483_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421612_422107_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422199_423177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423372_424578_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424574_426086_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426101_427415_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427605_427785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428194_428929_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431373_432324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432455_432854_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433264_433735_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433823_434168_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434267_435668_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437456_437975_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438085_438841_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439036_440269_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440261_441047_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441113_442085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442095_443073_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443198_444371_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444397_445426_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445491_446685_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448466_449417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	591471	652662	4110433	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591471_592422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592897_593788_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593784_594606_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594805_595297_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595315_596389_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596435_597539_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597614_598235_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598255_598765_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598819_599071_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599134_600268_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600275_600662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600658_603178_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603606_603945_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603941_604448_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604509_605310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605420_606362_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606455_607991_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609670_611521_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611524_612358_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612357_613299_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613550_614522_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614663_616952_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617258_618167_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618221_619187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619261_620923_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620994_621705_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621671_621836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621853_622804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623502_623886_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623943_624546_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624563_624965_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625080_625992_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625988_626570_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627364_628099_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628139_629189_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629336_629915_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630301_631279_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631372_635767_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635967_636816_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636974_637787_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637842_638793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638891_639692_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639753_640137_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640148_641501_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641788_642118_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642120_642870_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643052_643973_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644019_644232_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644254_644677_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644693_645794_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645890_647408_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647483_648323_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648344_649217_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649307_650402_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650695_651646_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651720_652662_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	657986	704177	4110433	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657986_659012_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659052_659292_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659361_660951_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660950_661499_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661579_662152_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662170_663082_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663155_664124_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664246_665320_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665324_667145_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667221_668172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668260_668596_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668729_669380_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669401_670820_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670889_671645_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671613_672372_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672382_673264_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673280_673988_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673990_674749_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674958_676701_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676693_677218_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677257_678052_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678219_679293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679391_680342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680593_680800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680871_681483_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682037_682289_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682281_682971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682988_683210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683227_684178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684817_685303_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685289_686567_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686569_687988_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688016_689072_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689077_689320_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689442_690045_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690473_691424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692098_692350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692412_692895_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692908_693097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693096_693492_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693488_693887_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693883_694306_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694313_694814_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695068_695587_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695596_695926_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695943_696234_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696259_698872_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698881_699241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699308_699842_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699838_700228_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700220_704177_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	710343	764273	4110433	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710343_712074_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712126_712555_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712557_713238_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713237_713696_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713732_714707_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714723_716040_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716071_716569_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716655_717345_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717344_718394_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718390_719185_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719353_719704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719679_720237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721366_722317_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724454_725684_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725686_727129_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727233_728379_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728410_729208_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729232_730792_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730788_733161_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733270_734374_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734373_735066_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735209_735911_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735895_736273_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737004_737955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738114_738987_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739327_739546_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739585_740965_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741006_742404_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742443_744096_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744099_744984_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744983_745925_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746003_747623_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747789_748605_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748672_749242_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749242_750193_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750847_751945_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751978_753244_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753401_754352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754595_755186_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755201_757646_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757765_758737_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758868_759393_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759352_760303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760524_762720_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762792_763200_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763322_764273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	886862	1027268	4110433	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|886862_887879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888075_889059_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890657_892046_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892076_893066_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893176_894409_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894690_895491_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895513_897745_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898532_898979_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899000_899747_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899890_900868_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901501_902113_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902106_903324_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903464_904415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904411_905131_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905251_907411_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907501_907771_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907859_908066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908064_908592_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908610_909390_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909557_910574_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910646_911138_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911148_912864_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914027_914978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914974_916807_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917205_917865_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918392_919073_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919354_920071_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920085_921387_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923531_926420_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926643_927996_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928024_928546_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928542_929997_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930031_930280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930385_931261_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931286_932342_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932354_933146_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933178_934549_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935725_936676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936728_936950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937109_937322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937441_938560_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938656_938872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939065_939317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939429_940380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940376_940760_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940814_942629_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942778_943606_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943651_944632_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944628_944841_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944837_946019_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946182_946917_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946918_949531_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949666_951580_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952195_952606_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952703_953789_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953887_954838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954834_955809_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955933_956845_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957121_957514_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957643_958594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958623_958806_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959578_960760_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960975_961653_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961649_962375_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962500_963082_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963452_966134_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966136_967267_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967259_968345_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968431_969331_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969327_970656_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970670_971342_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971529_973245_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973246_973606_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973797_974112_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974154_975375_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975371_976313_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976309_977299_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977333_977918_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978016_978967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979047_979959_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980019_981165_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981184_982099_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982170_982920_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982919_983849_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984092_985919_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|986001_986643_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986832_987867_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989703_990768_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991565_992474_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993961_995236_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995389_995770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995777_996650_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996955_997336_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997546_998272_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|998367_999318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999422_1000472_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000609_1001626_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003134_1003707_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003766_1004498_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004549_1005467_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006274_1009454_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_077106961.1|1009450_1010671_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010740_1010992_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011137_1011752_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011938_1013999_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014128_1014980_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014976_1015603_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015599_1017354_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017646_1020352_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020364_1022026_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022038_1023829_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024050_1025226_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025268_1026219_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026317_1027268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	1048219	1098881	4110433	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1048219_1049170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049468_1050206_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050641_1050965_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050999_1051560_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051680_1052556_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052568_1053516_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053617_1053911_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053937_1055995_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056009_1056510_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056583_1058290_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059153_1060206_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060258_1060648_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060656_1061289_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061388_1062405_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063235_1064243_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064239_1065883_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1065879_1066767_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066907_1067381_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067370_1068393_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068389_1069817_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070754_1071771_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072103_1073039_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073088_1074969_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075035_1075380_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075524_1076661_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076657_1077731_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077888_1079325_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079415_1080057_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080392_1081409_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083349_1084300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085604_1087026_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087289_1088006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088090_1088408_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088448_1088862_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1088863_1089223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089265_1090810_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090893_1091724_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091758_1092913_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092955_1093828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093944_1096233_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097439_1097904_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097930_1098881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	1114135	1179208	4110433	transposase,tRNA	Catovirus(25.0%)	46	NA	NA
WP_010929591.1|1114135_1115086_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115666_1116374_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116732_1117719_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1117858_1118872_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1118868_1119819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1119836_1119977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119931_1120390_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120426_1121740_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121757_1122129_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122125_1123589_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123729_1124458_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124439_1127289_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127501_1128452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128619_1129444_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129443_1130322_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131226_1132342_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132370_1133165_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133161_1135027_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135105_1135738_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135734_1136037_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136079_1137600_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137606_1138362_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138391_1139496_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139598_1141299_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141280_1142258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142267_1143548_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143540_1144236_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144269_1145097_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145378_1148609_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149344_1153271_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1155170_1156967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156966_1157935_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158004_1158850_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158917_1159472_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159518_1160469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160567_1161200_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161365_1163648_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163802_1166499_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166624_1167113_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169523_1172394_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172439_1173654_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1173883_1175311_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175408_1176500_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176512_1177271_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177358_1178261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178257_1179208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	1318842	1387329	4110433	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1318842_1319793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320561_1321200_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322089_1322536_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322617_1323319_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323319_1324087_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324083_1325322_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325321_1326248_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326350_1327466_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327481_1328432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328785_1329367_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329363_1330197_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330407_1331721_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331897_1332779_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332798_1333650_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333702_1334791_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334901_1336029_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336263_1336875_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336973_1337924_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338145_1338523_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338670_1339168_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339164_1339692_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339825_1340641_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340653_1341835_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1341882_1342776_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342902_1343373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343498_1344326_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344354_1345131_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345127_1345403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345417_1345882_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345893_1346595_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346704_1347205_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347287_1348466_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350093_1350429_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350616_1352065_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352122_1352467_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352573_1353113_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353205_1354156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1354173_1354413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354894_1355326_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355507_1355912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357148_1357472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357474_1358362_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358394_1358820_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358891_1359245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359484_1359991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360029_1361361_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361420_1362236_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362232_1363087_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366149_1368693_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370059_1371814_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371810_1373931_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373935_1376131_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376127_1379469_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382271_1383222_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383287_1383467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383583_1384339_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384325_1385471_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386378_1387329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	1447820	1503308	4110433	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447820_1448771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449972_1450419_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450411_1451887_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1451883_1452639_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452631_1453642_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453631_1455308_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455620_1455953_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455966_1456362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456371_1456698_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456694_1457021_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456947_1457970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457966_1458317_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458364_1458793_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458800_1460174_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460314_1460692_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460954_1462262_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462322_1463153_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463149_1463638_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463679_1465200_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465243_1465720_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466523_1469121_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469150_1469972_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470698_1471448_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471631_1472510_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472607_1473324_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473338_1473899_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474065_1474830_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1474849_1475707_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475703_1476903_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476942_1478277_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478329_1480666_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480791_1481355_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481363_1482455_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482526_1482982_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482982_1483777_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483773_1484955_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484941_1485547_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485543_1486317_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486328_1487156_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487317_1489681_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489748_1490468_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490591_1491017_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491051_1492002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492119_1493046_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493111_1494269_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494249_1494717_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1494864_1495815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495831_1496266_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496255_1496606_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496802_1497957_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497953_1499126_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499173_1500067_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500112_1500550_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500609_1501299_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501308_1502259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502357_1503308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	1598005	1657917	4110433	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1598005_1598494_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598611_1599190_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599295_1599664_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599762_1600713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600719_1601832_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602518_1603721_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1603924_1606585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606597_1610002_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610669_1612895_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612941_1613268_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613318_1613927_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614025_1614976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615074_1616025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616094_1616859_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1616855_1617392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617558_1618410_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618469_1619096_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619092_1620043_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620141_1621254_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621243_1622245_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622350_1623862_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1623858_1625163_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625274_1625835_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626102_1626657_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627112_1627328_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627582_1630180_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630176_1631364_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632022_1632637_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632725_1633847_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1633864_1634770_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635662_1636613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636794_1637547_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637615_1638275_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638271_1639000_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639012_1641292_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641316_1641520_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641561_1642194_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642329_1643247_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643243_1643957_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644194_1644965_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644969_1645569_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645813_1647304_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647362_1647647_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648212_1649139_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649275_1650016_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650182_1651559_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651740_1652646_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654297_1656100_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656217_1656868_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656966_1657917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	1703089	1758680	4110433	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703089_1704040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704098_1704872_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1704864_1706421_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706417_1707368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708694_1709297_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709536_1710238_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710231_1711014_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711198_1712149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712247_1712985_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713174_1713933_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713979_1714969_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715146_1716115_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717654_1718623_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718631_1719573_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720046_1721057_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721047_1722562_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722558_1723905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1723907_1724942_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724991_1726617_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727169_1728120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728224_1729172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729225_1731040_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731032_1731707_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731836_1734911_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1734924_1735224_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735538_1736162_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736405_1737275_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737252_1738197_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738282_1739209_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739321_1740101_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740091_1741288_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741318_1742269_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742490_1743180_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743244_1744000_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744051_1745044_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745053_1746007_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746122_1747085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748486_1748915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1748911_1749862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750155_1750878_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751316_1752504_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1752507_1752858_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754607_1755579_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755592_1756306_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756310_1757228_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757334_1757631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757729_1758680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	1991444	2061096	4110433	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991444_1994102_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994179_1995382_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995378_1995891_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996013_1996451_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996727_1997678_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997776_1998727_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1998890_2000786_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2000899_2001067_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001130_2001367_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2001735_2002887_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2004450_2005401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2005852_2006854_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007026_2007884_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2007880_2009143_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009243_2009618_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2009690_2010878_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2010962_2011733_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2011846_2012611_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012561_2013863_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2013859_2014666_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2016410_2017382_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017538_2018051_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018209_2019184_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020184_2020979_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021004_2021811_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2021921_2022512_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022522_2023701_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023803_2024178_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024430_2025762_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025828_2029059_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030549_2031296_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031380_2031842_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2031879_2032938_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2032900_2034730_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034769_2035342_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036766_2037588_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2037906_2039229_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039588_2040224_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040183_2041134_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042004_2042877_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2042954_2044094_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044452_2045709_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045714_2046242_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046246_2047065_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047064_2047787_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047808_2048123_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048140_2049289_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049319_2050195_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050191_2051511_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051583_2052780_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052790_2054278_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2056872_2057772_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057909_2058875_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058973_2059924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060145_2061096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2072592	2121988	4110433	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072592_2073543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074680_2074977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075151_2076504_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076646_2077663_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079642_2080656_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2080742_2081648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081804_2082149_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082306_2082765_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082778_2084995_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2084991_2086053_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086081_2087056_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087007_2087826_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087838_2088447_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2088621_2089017_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089035_2090475_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090503_2090851_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2090869_2091820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092472_2093423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093506_2095324_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095397_2096045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096057_2096987_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097156_2097621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2097868_2098549_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098597_2100289_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100304_2100856_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2100852_2101224_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101336_2102173_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102183_2102708_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102805_2102985_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103114_2104089_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104219_2104576_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104565_2105441_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105539_2106424_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106445_2107741_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108689_2109340_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2109427_2110948_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111205_2113071_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114116_2115067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115084_2115225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116039_2116399_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116386_2117823_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117819_2118473_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118469_2119663_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119766_2121041_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121037_2121988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2133192	2173883	4110433	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133192_2134143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134241_2135192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135151_2135565_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2135849_2136149_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136558_2138841_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139306_2139501_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139526_2141557_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141576_2141789_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142066_2142606_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142719_2144015_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144091_2145249_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145432_2146332_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146350_2147655_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147620_2148727_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148814_2149051_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149189_2150260_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150263_2151619_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2151645_2152803_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152808_2153447_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2153448_2154744_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2154793_2156080_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156095_2156602_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156598_2157747_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157774_2158200_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158522_2161405_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161497_2162253_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163018_2164368_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164466_2165417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165515_2166466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166539_2167013_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167038_2168247_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168243_2169017_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169016_2169640_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169805_2170066_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170369_2170951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171017_2171272_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171258_2173883_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2201666	2267215	4110433	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2201666_2202617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202817_2203627_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2203751_2204702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204698_2205592_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205716_2205911_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2205910_2206252_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206261_2208124_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208253_2208766_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208768_2209092_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209093_2209504_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209541_2210753_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210770_2211283_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211498_2211990_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212242_2214279_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214356_2215559_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215687_2216338_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2217895_2218846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219416_2219629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219646_2220378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220412_2221054_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221046_2221715_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223927_2224704_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224725_2225883_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2225879_2226311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2226307_2227105_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227124_2227526_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227592_2228564_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228629_2229853_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230080_2231031_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231154_2233608_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233796_2235101_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235205_2235859_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2235861_2237172_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2237350_2237929_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238040_2238241_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238586_2239153_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239236_2239440_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239746_2240067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240108_2240390_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240464_2241721_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242103_2242433_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244003_2244825_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244824_2245964_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245970_2246867_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2246881_2248789_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249148_2251761_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251813_2254114_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254110_2255319_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2255580_2255955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255951_2256902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257000_2258995_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259054_2260020_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260009_2262871_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2262873_2263380_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263484_2264693_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264694_2265633_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265794_2266268_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266264_2267215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2353392	2416969	4110433	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2353392_2354343_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2354644_2355121_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2355744_2357382_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2357412_2358726_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2358859_2359177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2359277_2360600_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2360596_2361547_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2361645_2362596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2363125_2364148_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2364176_2365007_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2365023_2366721_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2366785_2367862_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2368021_2368885_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368915_2369485_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2369501_2370353_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2371410_2372292_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2372366_2373356_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2373418_2374369_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2374431_2375289_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2375348_2375837_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2377409_2378600_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2378596_2380183_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2380201_2381269_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2381373_2382918_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2383337_2384912_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2385028_2386036_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2386032_2386872_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2386876_2388514_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2388510_2389461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2389478_2389622_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2389603_2390878_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390907_2391198_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2391270_2392284_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2392303_2393566_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2393568_2394492_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2394488_2395982_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395992_2396925_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2397106_2398432_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2398466_2399822_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2399882_2401403_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2401557_2402289_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2402386_2403697_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2403712_2404624_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2404614_2405208_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2405269_2405656_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2405667_2406138_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2406149_2406773_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2406793_2409541_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2416018_2416969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2537117	2602838	4110433	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2537117_2539061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2539057_2539978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539997_2540585_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2540577_2541468_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2541464_2542226_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2542231_2543116_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2543138_2544932_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2545062_2546550_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2546587_2547646_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2547645_2548146_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2548158_2548758_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2548754_2549255_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2549256_2550486_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2550675_2550915_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2551097_2551850_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2551851_2552787_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2552868_2553855_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2553854_2554913_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554969_2555152_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2555203_2555797_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555905_2556505_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2556501_2557212_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2557213_2558041_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2559857_2561099_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561110_2561884_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561910_2562861_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562959_2563742_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563830_2565057_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565782_2567168_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567186_2567792_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567788_2569645_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569641_2570442_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570456_2571650_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571717_2572692_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572814_2574038_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574148_2576353_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576647_2577307_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577314_2577521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2577859_2578615_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2578885_2579401_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579673_2579991_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580178_2580415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580705_2582061_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582107_2583448_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583549_2584182_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584181_2586551_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586583_2587543_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587529_2588216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588212_2588545_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588660_2589611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589709_2590660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2590656_2592723_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2592722_2592995_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2593689_2593779_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2593778_2595563_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2595586_2597752_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2597762_2598362_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2601183_2601879_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2601887_2602838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2688955	2729624	4110433	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688955_2689906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690016_2690199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690298_2690895_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691078_2692170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692669_2693080_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2693138_2693468_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693485_2695903_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695915_2696938_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697012_2697372_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697387_2697585_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697920_2698871_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699065_2699515_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699511_2700462_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700572_2702021_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702135_2702381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702520_2703471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703715_2704429_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704551_2704779_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705073_2705712_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705820_2706855_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2706851_2707802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708217_2708742_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708745_2709015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709213_2710275_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710358_2711993_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711994_2712798_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712826_2713786_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713789_2715304_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715340_2716345_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716776_2717247_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717282_2717894_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717924_2718548_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718628_2720161_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2720195_2721413_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721480_2722512_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722508_2723678_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723671_2724352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724513_2725356_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725518_2726490_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726661_2727540_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727562_2728633_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728673_2729624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2785089	2857959	4110433	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785089_2785506_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785616_2786249_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786277_2786721_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786742_2787834_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2787888_2788689_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788824_2789445_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789584_2790058_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791197_2792148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792144_2799806_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800046_2804093_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804405_2804987_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804983_2806282_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806361_2807390_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807650_2808601_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808597_2809548_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2809864_2810470_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810523_2811837_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811911_2812382_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812381_2813170_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813180_2814833_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814920_2815871_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817032_2817539_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817535_2818300_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818315_2818600_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818664_2819654_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819825_2820755_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820726_2821413_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821446_2821992_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822036_2823302_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823298_2824201_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825382_2826327_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826421_2827939_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827980_2829609_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829716_2830598_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833710_2834085_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834109_2834448_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834491_2836126_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836164_2837511_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837618_2839040_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839109_2839694_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839796_2840747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2840881_2841988_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841998_2843096_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843240_2844446_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844452_2844974_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844970_2845453_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845458_2845710_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845690_2846176_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846311_2849773_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849790_2850675_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850684_2851116_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851362_2851866_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851943_2853344_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853418_2854294_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854290_2855298_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855765_2856071_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856161_2856752_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856942_2857959_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2861102	2927912	4110433	transposase,protease	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2861102_2862053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862151_2863102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863098_2863893_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863924_2864629_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864703_2865504_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865500_2865908_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865904_2866546_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866538_2868539_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869799_2871131_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871127_2872078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873784_2874051_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874758_2875097_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879649_2880252_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880348_2881638_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881695_2882427_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882423_2883227_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883223_2884312_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884308_2885238_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885386_2886532_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886553_2887504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887521_2887680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887834_2891656_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891812_2892481_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892485_2894159_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894177_2895497_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895501_2897817_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2897872_2900041_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900037_2905218_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905316_2905631_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2905858_2906104_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906198_2906717_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906816_2908022_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908137_2909535_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909651_2910230_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910302_2911694_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2911861_2912812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913092_2913713_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913709_2914123_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914119_2915163_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915218_2915407_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915416_2916181_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916271_2916928_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917019_2917778_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917803_2919405_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919605_2920610_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920710_2920974_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921091_2921868_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922458_2923409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925792_2926905_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926961_2927912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	2958298	2997487	4110433	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2958298_2959249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959266_2959416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959369_2960266_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962543_2964769_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964933_2966022_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965978_2966632_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966679_2967477_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968008_2968959_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969039_2970188_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970244_2971195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971293_2971599_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971627_2972062_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972063_2973308_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973304_2974015_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974029_2974941_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975303_2975708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975704_2976163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976169_2977078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977074_2977941_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977927_2978755_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978765_2979893_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980970_2982209_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982250_2983513_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983519_2984272_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984323_2984509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984784_2985249_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985280_2985940_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986084_2988193_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988189_2989140_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989243_2989864_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989967_2990708_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991842_2992967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993012_2993381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993622_2994573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995608_2996151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996348_2996519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996536_2997487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	3382984	3503229	4110433	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3382984_3383935_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384339_3384984_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385008_3385593_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385693_3386311_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386313_3388029_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388025_3388334_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388350_3388968_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389012_3389315_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389415_3390270_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390457_3390682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3390851_3391124_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391541_3391949_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392318_3393113_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393213_3394449_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394517_3395534_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395545_3396922_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396918_3398115_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398111_3399650_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399646_3400906_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3402846_3403797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404563_3405658_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405650_3406985_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406938_3407622_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3407647_3408811_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3408807_3409809_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409808_3410681_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410677_3411427_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411423_3412215_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412211_3413351_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413626_3414412_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414445_3415228_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415231_3415621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416760_3417624_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417659_3418748_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418744_3419695_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420048_3423027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423953_3424832_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3425796_3426747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3427829_3428780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3428776_3429244_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429286_3430057_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3430077_3430878_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430888_3432298_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432392_3433178_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433417_3434434_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434541_3434934_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435071_3435752_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3435756_3436728_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3436823_3437774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3439278_3439980_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439979_3441404_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3442473_3443814_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443929_3445693_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3445804_3446683_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3446795_3447611_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447614_3447866_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447950_3448967_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449297_3449519_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3451879_3452797_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453294_3454503_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454582_3456154_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456271_3457207_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457395_3458340_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458907_3464625_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464630_3465758_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3465813_3466440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3466711_3467728_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3467823_3468534_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468530_3469520_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469615_3471247_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471249_3471987_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472142_3473015_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3473364_3474504_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474500_3475160_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475231_3475864_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475893_3476412_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476422_3477532_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477578_3478433_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478434_3479337_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480559_3481510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483266_3484256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3484431_3485220_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485216_3486248_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486266_3486830_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3486885_3488406_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488669_3489374_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3489381_3490110_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490224_3490599_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490641_3491931_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491927_3493097_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493093_3493933_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493992_3494928_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494940_3495891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495989_3496952_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496983_3497343_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497467_3498370_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498371_3500144_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500178_3500955_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502278_3503229_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	3518167	3576240	4110433	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518167_3519118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519246_3520380_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520423_3521329_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521331_3523032_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523028_3523949_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523956_3524934_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524992_3526027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3528001_3528238_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3528364_3529228_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529316_3530138_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530217_3530955_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530951_3531944_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3532096_3532720_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3532764_3533913_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3536236_3537187_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537527_3538478_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538576_3539527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3539823_3540321_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540363_3542139_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542146_3543013_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543019_3543754_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544923_3545718_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546007_3546598_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546631_3547960_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548034_3549180_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549291_3550290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550252_3550687_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552203_3553088_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553084_3554290_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554286_3555147_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3555259_3557050_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3557090_3557735_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3557756_3558065_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558230_3559517_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560950_3561901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3563852_3565067_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565172_3566162_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566158_3566767_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3566779_3567409_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567405_3568026_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568057_3568849_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3569700_3570156_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3570174_3571101_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571154_3572441_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573371_3574244_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574240_3575191_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575289_3576240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011728	Bordetella pertussis strain I273 chromosome, complete genome	4110433	4009501	4074413	4110433	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4009501_4009987_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010075_4010213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010205_4011186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011452_4012262_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012301_4012982_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012975_4013434_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013445_4013808_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013890_4014574_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014629_4014938_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014956_4015271_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015267_4017742_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017749_4019141_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019137_4019323_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019301_4020003_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019999_4020821_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020801_4021926_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021918_4022938_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023143_4024034_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024278_4025070_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025152_4025527_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025504_4026914_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026906_4028289_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028623_4030228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030305_4031277_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031287_4032214_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032604_4033555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033724_4034951_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035150_4036017_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036009_4036972_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037072_4038023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038121_4039072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039170_4040121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040117_4041611_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041607_4044715_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044711_4047780_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047776_4049027_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049207_4049960_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050001_4050646_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050654_4051635_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051734_4052478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052560_4052908_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053005_4053848_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053892_4054780_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054806_4054995_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055092_4056550_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056536_4058063_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058081_4058549_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058548_4059571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059691_4060432_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060486_4061587_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061588_4062779_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062898_4063915_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064233_4064905_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064901_4065810_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066021_4066669_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070529_4071597_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071607_4072417_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072506_4073280_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073280_4073445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073462_4074413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
