The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	27282	70036	4109543	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	77634	136108	4109543	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	164893	225404	4109543	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_010930800.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	233336	286924	4109543	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	390857	448366	4109543	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	590420	704174	4109543	protease,tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(14.81%)	111	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624028_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639096_640449_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647292_648165_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_005013747.1|649643_650594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814209.1|652742_653102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931461.1|653483_654521_-	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_010931462.1|654837_656178_+	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931463.1|656187_656640_-	membrane protein	NA	NA	NA	NA	NA
WP_003814217.1|656736_657918_+	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_023995141.1|657983_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680590_680797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682034_682286_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682278_682968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684814_685300_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685286_686564_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692905_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694310_694811_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695065_695584_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695593_695923_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695940_696231_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696256_698869_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698878_699238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699305_699839_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699835_700225_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700217_704174_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	710340	764270	4109543	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710340_712071_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712123_712552_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712554_713235_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713234_713693_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713729_714704_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714720_716037_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716068_716566_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716652_717342_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717341_718391_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718387_719182_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719350_719701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719676_720234_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721363_722314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724451_725681_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725683_727126_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727230_728376_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728407_729205_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729229_730789_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730785_733158_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733267_734371_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734370_735063_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735206_735908_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735892_736270_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737001_737952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738111_738984_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739324_739543_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739582_740962_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741003_742401_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742440_744093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744096_744981_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744980_745922_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746000_747620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747786_748602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748669_749239_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749239_750190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750844_751942_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751975_753241_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753398_754349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754592_755183_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755198_757643_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757762_758734_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758865_759390_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759349_760300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760521_762717_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762789_763197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763319_764270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	886859	954835	4109543	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886859_887876_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077089534.1|888072_889056_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890654_892043_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892073_893063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893173_894406_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894687_895488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895510_897742_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898529_898976_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898997_899744_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899887_900865_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901498_902110_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902103_903321_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010931070.1|903461_904412_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904408_905128_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905248_907408_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907498_907768_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907856_908063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908061_908589_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908607_909387_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909554_910571_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910643_911135_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911145_912861_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914024_914975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914971_916804_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917202_917862_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918389_919070_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919351_920068_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920082_921384_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923528_926417_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926640_927993_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928021_928543_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928539_929994_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930028_930277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930382_931258_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931283_932339_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932351_933143_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933175_934546_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935722_936673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936725_936947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937106_937319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937438_938557_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938653_938869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939062_939314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939426_940377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940373_940757_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940811_942626_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942775_943603_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943648_944629_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944625_944838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944834_946016_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946179_946914_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946915_949528_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949663_951577_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952192_952603_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952700_953786_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010929969.1|953884_954835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	998364	1070881	4109543	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998364_999315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999419_1000469_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000606_1001623_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003131_1003704_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003763_1004495_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004546_1005464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006271_1009451_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009447_1010830_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010899_1011151_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011296_1011911_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012097_1014158_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014287_1015139_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015135_1015762_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015758_1017513_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017805_1020511_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020523_1022185_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022197_1023988_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024209_1025385_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025427_1026378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026476_1027217_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027411_1029448_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029465_1030476_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030593_1031787_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031816_1032590_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032586_1033777_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033802_1034741_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034737_1037086_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037240_1037882_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039211_1039364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039395_1039944_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039962_1040448_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040625_1041564_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041566_1041884_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041929_1042874_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044554_1045205_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045258_1045594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045590_1046451_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046467_1046749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046822_1047086_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047329_1048280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048578_1049316_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049751_1050075_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050109_1050670_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050790_1051666_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051678_1052626_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052727_1053021_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053047_1055105_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055119_1055620_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055693_1057400_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058263_1059316_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059368_1059758_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059766_1060399_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060498_1061515_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062345_1063353_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063349_1064993_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064989_1065877_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066017_1066491_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066480_1067503_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067499_1068927_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069864_1070881_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1074634	1136710	4109543	transposase,holin,tRNA	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1074634_1075771_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075767_1076841_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076998_1078435_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078525_1079167_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079502_1080519_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080851_1083599_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083665_1085087_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085350_1086067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086151_1086469_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110495_1110747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112196_1113147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113727_1114435_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1117978_1118929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1119041_1119500_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119536_1120850_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120867_1121239_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121235_1122699_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122839_1123568_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123549_1126399_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126611_1127562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127729_1128554_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128553_1129432_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130336_1131452_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131480_1132275_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132271_1134137_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134215_1134848_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134844_1135147_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135189_1136710_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 11
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1154280	1219865	4109543	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1154280_1156077_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1156076_1157045_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1157114_1157960_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1158027_1158582_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1158628_1159579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1159677_1160310_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1160475_1162758_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1162912_1165609_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165734_1166223_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168633_1171504_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171549_1172764_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1172993_1174421_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174518_1175610_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175622_1176381_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176468_1177371_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177367_1178318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178447_1179431_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179485_1180208_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181686_1183042_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183122_1185498_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1185662_1187738_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1187799_1188594_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188701_1189664_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189651_1190407_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190514_1192152_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192219_1192957_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193059_1193635_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193807_1194344_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1194376_1194691_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194706_1195552_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1195590_1196970_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197047_1197929_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198027_1198978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1198974_1199385_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199492_1200347_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200339_1201302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201347_1202472_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202577_1203456_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203580_1204360_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204513_1205935_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206369_1208067_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208293_1209235_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209561_1210308_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210315_1211242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211363_1212281_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212320_1213274_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213298_1213877_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215550_1216159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216236_1216590_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216673_1217663_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1217865_1218816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1218914_1219865_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1319001	1384430	4109543	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1319001_1319952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320720_1321359_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322248_1322695_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322776_1323478_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323478_1324246_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324242_1325481_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325480_1326407_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326509_1327625_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327640_1328591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328944_1329526_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329522_1330356_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330566_1331880_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332056_1332938_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332957_1333809_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333861_1334950_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335060_1336188_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336422_1337034_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337132_1338083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338304_1338682_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338829_1339327_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339323_1339851_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339984_1340800_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340812_1341994_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342041_1342935_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343061_1343532_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343657_1344485_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344513_1345290_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345286_1345562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345576_1346041_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346052_1346754_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346863_1347364_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347446_1348625_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350252_1350588_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350775_1352224_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352281_1352626_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352732_1353272_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353364_1354315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1354413_1355364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1355462_1355870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356102_1356534_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356715_1357120_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358356_1358680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358682_1359570_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359602_1360028_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360099_1360453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360692_1361199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361237_1362569_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362628_1363444_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363440_1364295_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367357_1369901_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371267_1373022_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373018_1375139_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375143_1377339_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377335_1380677_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383479_1384430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1449028	1504515	4109543	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449028_1449979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451180_1451627_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451619_1453095_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453091_1453847_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453839_1454850_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454839_1456516_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456828_1457161_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457174_1457570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457579_1457906_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457902_1458229_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1458155_1458569_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459173_1459524_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459571_1460000_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460007_1461381_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461521_1461899_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462161_1463469_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463529_1464360_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464356_1464845_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464886_1466407_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466450_1466927_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467730_1470328_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470357_1471179_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471905_1472655_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472838_1473717_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473814_1474531_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474545_1475106_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475272_1476037_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476056_1476914_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476910_1478110_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478149_1479484_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479536_1481873_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1481998_1482562_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482570_1483662_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483733_1484189_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484189_1484984_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484980_1486162_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486148_1486754_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486750_1487524_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487535_1488363_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488524_1490888_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490955_1491675_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491798_1492224_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492258_1493209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493326_1494253_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494318_1495476_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495456_1495924_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496071_1497022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497038_1497473_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497462_1497813_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498009_1499164_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499160_1500333_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500380_1501274_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501319_1501757_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501816_1502506_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502515_1503466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1503564_1504515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1684833	1759021	4109543	protease,transposase	Bacillus_phage(10.0%)	58	NA	NA
WP_010929956.1|1684833_1685784_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446280.1|1686084_1686792_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_019247284.1|1686766_1687921_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003813217.1|1688045_1688318_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA	NA
WP_010930871.1|1688322_1689087_-	YdcF family protein	NA	NA	NA	NA	NA
WP_010926806.1|1689099_1690065_-	heptosyltransferase II	NA	NA	NA	NA	NA
WP_003813209.1|1690176_1691952_+	lipid A export permease/ATP-binding protein MsbA	NA	W8CYL7	Bacillus_phage	29.5	4.0e-50
WP_010930869.1|1691924_1693424_-	MFS transporter	NA	NA	NA	NA	NA
WP_003813206.1|1693507_1694053_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930868.1|1694049_1694952_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930867.1|1694985_1696449_-	ribonuclease G	NA	NA	NA	NA	NA
WP_005012808.1|1696492_1697443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1703921_1706669_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1706689_1707313_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1707324_1707795_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1707806_1708193_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1708254_1708848_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1708838_1709750_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_023853662.1|1709765_1711076_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1711173_1711905_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1712059_1713580_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930859.1|1713640_1714996_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1715030_1716356_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1716537_1717470_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1717480_1718974_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1718970_1719894_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1719896_1721159_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1721178_1722192_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1722264_1722555_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1722584_1723859_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010931070.1|1724001_1724952_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1724948_1726586_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1726590_1727430_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023997180.1|1727426_1728434_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1728550_1730125_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1730544_1732089_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1732193_1733261_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1733279_1734866_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1734862_1736053_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1737625_1738114_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1738173_1739031_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1739093_1740044_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1740106_1741096_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1741170_1742052_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1743109_1743961_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1743977_1744547_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1744577_1745441_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1745600_1746677_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1746741_1748439_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1748455_1749286_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1749314_1750337_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1750866_1751817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1751813_1753136_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1753236_1753554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1753687_1755001_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1755031_1756669_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1757292_1757769_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1758070_1759021_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1798134	1855413	4109543	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|1798134_1799085_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1799183_1801784_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1801890_1802895_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1803003_1804344_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1804384_1805413_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1805608_1806154_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1806150_1806711_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1806809_1807760_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1807797_1808385_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1808402_1808786_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1810145_1811438_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1811572_1812613_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1812710_1813727_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1813994_1814630_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1814767_1815526_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1815510_1816290_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1816307_1817192_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1817188_1817968_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1817994_1818672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1818960_1819713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1819831_1821232_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1821255_1821654_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1821829_1822030_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1822168_1822897_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1823030_1824446_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1824449_1825313_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1825325_1826075_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1826317_1828273_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1828254_1828923_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1829697_1830648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1830796_1831135_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1831192_1831354_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1831385_1831586_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1831851_1834425_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1834495_1837045_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1839595_1840084_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1840175_1841327_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1841380_1842202_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1842240_1843470_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1843598_1844039_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1844149_1845100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1845096_1845570_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1845731_1846670_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1846671_1847880_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1847984_1848491_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1848493_1851355_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1851344_1852310_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1852369_1854364_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1854462_1855413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1906662	1965932	4109543	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1906662_1907613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1907737_1908547_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1908747_1909698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1910971_1912189_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1913245_1914148_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1914224_1915097_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1915227_1915596_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1915653_1916700_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1916895_1918152_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1918156_1919494_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1919643_1920600_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1920702_1921635_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1921750_1922071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1922063_1922423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1922470_1924045_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1924097_1925042_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1925059_1925890_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1925882_1927517_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1927513_1928869_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1929775_1931353_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1931356_1932631_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1932728_1933103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1934818_1935952_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1935989_1936595_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1936591_1937410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1937481_1940106_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1940092_1940347_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1940413_1940995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1941298_1941559_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1941724_1942348_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1942347_1943121_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1943117_1944326_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1944351_1944825_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1944898_1945849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1945947_1946898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1946996_1948346_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1949111_1949867_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1949959_1952842_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1953164_1953590_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1953617_1954766_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1954762_1955269_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1955284_1956571_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1956620_1957916_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1957917_1958556_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1958561_1959719_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1959745_1961101_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1961104_1962175_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1962313_1962550_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1962637_1963744_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1963709_1965014_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1965032_1965932_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	1976172	2021544	4109543	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1976172_1977123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1977221_1978172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1978371_1979457_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1979472_1980234_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1980230_1981154_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1981252_1981777_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1981785_1982529_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1982624_1982864_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1982877_1983030_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1983115_1984606_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1984697_1985636_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1985632_1985809_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1985811_1986474_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1988095_1988239_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1988235_1989210_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1989376_1990327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1990323_1991598_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1991701_1992895_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1992891_1993545_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1993541_1994978_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1994965_1995325_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1996139_1996280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1996297_1997248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1997346_1998297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1999342_2001208_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2001465_2002986_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2003073_2003724_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2004672_2005968_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2005989_2006874_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2006972_2007848_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2007837_2008194_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2008324_2009299_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2009428_2009608_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2009705_2010230_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2010240_2011077_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2011189_2011561_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2011557_2012109_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2012124_2013816_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2013864_2014545_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2014792_2015257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2015426_2016356_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2016368_2017016_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2017089_2018907_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2018990_2019941_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2020593_2021544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2051317	2115686	4109543	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2051317_2052268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2052489_2053440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2053538_2054504_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2054641_2055541_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2058135_2059623_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2059633_2060830_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2060902_2062222_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2062218_2063094_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2063124_2064273_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2064290_2064605_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2064626_2065349_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2065348_2066167_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2066171_2066699_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2066704_2067961_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2068319_2069459_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2069536_2070409_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2071279_2072230_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2072189_2072825_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2073184_2074507_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2074825_2075647_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2077071_2077644_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2077683_2079513_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2079475_2080534_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2080571_2081033_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2081117_2081864_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2083354_2086585_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2086651_2087983_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2088235_2088610_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2088712_2089891_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2089901_2090492_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2090602_2091409_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2091434_2092229_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2093229_2094204_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2094362_2094875_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2095031_2096003_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2097747_2098554_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2098550_2099852_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2099802_2100567_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2100680_2101451_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2101535_2102723_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2102795_2103170_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2103270_2104533_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2104529_2105387_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2105559_2106561_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2107012_2107963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2109526_2110678_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2111046_2111283_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2111346_2111514_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2111627_2113523_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2113686_2114637_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2114735_2115686_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2302154	2363502	4109543	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2302154_2303105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2303221_2303941_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2304113_2305100_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2305100_2305583_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2305586_2306870_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2306866_2307805_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2307801_2309511_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2309520_2310768_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2312378_2313668_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2314805_2315579_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2316240_2316984_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2317058_2317799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2317994_2318831_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2318881_2319652_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2319701_2320754_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2320750_2321377_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2321373_2322408_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2322586_2323603_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2323701_2324652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2327392_2328682_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2328800_2329238_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2329281_2330490_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2330636_2331101_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2331124_2332075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2333059_2333833_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2333829_2334828_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2334912_2335689_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2335844_2337449_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2337829_2338954_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2339080_2339704_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2339700_2341602_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2341650_2342445_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2342457_2343459_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2343455_2343905_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2343954_2344803_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2344900_2345443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2345486_2346437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2346592_2346919_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2346915_2347197_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2347196_2347676_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2347672_2349301_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2349297_2349642_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2349641_2352575_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2353733_2354684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2354782_2355079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2355185_2356103_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2356107_2356821_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2356834_2357806_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2359555_2359906_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2359909_2361097_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2361535_2362258_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2362551_2363502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2384293	2455447	4109543	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2384293_2385244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2385796_2387422_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2387471_2388506_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2388508_2389855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2389851_2391366_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2391356_2392367_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2392840_2393782_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2393790_2394759_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2396298_2397267_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2397444_2398434_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2398480_2399239_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2399428_2400166_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2400264_2401215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2401399_2402182_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2402175_2402877_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2403116_2403719_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2405045_2405996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2405992_2407549_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2407541_2408315_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2408373_2409324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2409405_2410581_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2410594_2412652_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2412648_2413674_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2413685_2414975_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2414997_2416095_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2416091_2416982_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2416978_2419063_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2419094_2420264_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2420305_2421046_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2421045_2421816_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2422671_2423457_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2423483_2425568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2425735_2427691_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2428014_2428515_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2428613_2430140_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2430277_2431165_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2431179_2432133_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2432184_2434275_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2434290_2434677_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2437370_2438174_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2439467_2440370_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2440434_2441211_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2441532_2442582_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2442705_2444376_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2444380_2445175_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2445273_2446224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2446243_2447149_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2447226_2447925_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2448084_2449029_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2449038_2450526_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2450525_2451593_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2451656_2453069_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2453254_2454475_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2454496_2455447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2539647	2590819	4109543	transposase,tRNA	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2539647_2540598_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2540696_2541467_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2541463_2542135_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2542131_2542773_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2542785_2543706_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2543866_2545027_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2545068_2546019_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2546617_2546842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2547006_2548701_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2548822_2549092_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2549207_2549606_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2549616_2550573_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2550709_2551255_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2551275_2553225_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2553612_2554389_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2554394_2554787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2555208_2556159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2556155_2557253_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2557284_2558235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2560016_2561258_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2561269_2562043_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2562069_2563020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2563118_2563901_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2563989_2565216_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2565941_2567327_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2567345_2567951_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2567947_2569804_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2569800_2570601_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2570615_2571809_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2571876_2572851_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2572973_2574197_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2574307_2576512_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2576806_2577466_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2577473_2577680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2578018_2578774_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2579044_2579560_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2579832_2580150_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2580337_2580574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2580864_2582220_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2582266_2583607_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2583708_2584341_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2584340_2586710_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2586742_2587702_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2587688_2588375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2588371_2588704_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2588819_2589770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2589868_2590819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2689114	2729783	4109543	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2689114_2690065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2690175_2690358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2690457_2691054_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2691237_2692329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2692828_2693239_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2693297_2693627_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2693644_2696062_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2696074_2697097_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2697171_2697531_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2697546_2697744_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2698079_2699030_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2699224_2699674_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2699670_2700621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2700731_2702180_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2702294_2702540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2702679_2703630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2703874_2704588_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2704710_2704938_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2705232_2705871_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2705979_2707014_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2707010_2707961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2708376_2708901_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2708904_2709174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2709372_2710434_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2710517_2712152_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2712153_2712957_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2712985_2713945_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2713948_2715463_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2715499_2716504_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2716935_2717406_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2717441_2718053_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2718083_2718707_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2718787_2720320_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2720354_2721572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2721639_2722671_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2722667_2723837_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2723830_2724511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2724672_2725515_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2725677_2726649_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2726820_2727699_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2727721_2728792_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2728832_2729783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2785248	2858118	4109543	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2785248_2785665_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2785775_2786408_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2786436_2786880_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2786901_2787993_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2788047_2788848_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2788983_2789604_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2789743_2790217_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2791356_2792307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2792303_2799965_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2800205_2804252_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2804564_2805146_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2805142_2806441_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2806520_2807549_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2807809_2808760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2808756_2809707_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810023_2810629_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810682_2811996_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812070_2812541_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812540_2813329_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813339_2814992_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815079_2816030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817191_2817698_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817694_2818459_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818474_2818759_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818823_2819813_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819984_2820914_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820885_2821572_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821605_2822151_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822195_2823461_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823457_2824360_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825541_2826486_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826580_2828098_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828139_2829768_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829875_2830757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833869_2834244_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834268_2834607_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834650_2836285_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836323_2837670_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837777_2839199_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839268_2839853_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839955_2840906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841040_2842147_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842157_2843255_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843399_2844605_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844611_2845133_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845129_2845612_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845617_2845869_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845849_2846335_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846470_2849932_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849949_2850834_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850843_2851275_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851521_2852025_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852102_2853503_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853577_2854453_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854449_2855457_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855924_2856230_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856320_2856911_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857101_2858118_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2861261	2929121	4109543	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2861261_2862212_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862310_2863261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2863257_2864052_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2864083_2864788_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2864862_2865663_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2865659_2866067_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2866063_2866705_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2866697_2868698_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2869958_2871290_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2871286_2872237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2872335_2873286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874992_2875259_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875966_2876305_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880858_2881461_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881557_2882847_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882904_2883636_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883632_2884436_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884432_2885521_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885517_2886447_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886595_2887741_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887762_2888713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2889043_2892865_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893021_2893690_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893694_2895368_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895386_2896706_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896710_2899026_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899081_2901250_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901246_2906427_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906525_2906840_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907067_2907313_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907407_2907926_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908025_2909231_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909346_2910744_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910860_2911439_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911511_2912903_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913070_2914021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914301_2914922_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914918_2915332_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915328_2916372_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916427_2916616_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916625_2917390_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917480_2918137_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918228_2918987_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919012_2920614_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920814_2921819_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921919_2922183_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922300_2923077_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923667_2924618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927001_2928114_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928170_2929121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	2959507	3003198	4109543	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2959507_2960458_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2960578_2961475_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963752_2965978_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966142_2967231_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967187_2967841_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967888_2968686_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969217_2970168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970248_2971397_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971453_2972404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972502_2972808_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972836_2973271_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973272_2974517_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974513_2975224_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975238_2976150_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976512_2976917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976913_2977372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977378_2978287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978283_2979150_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979136_2979964_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979974_2981102_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982179_2983418_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983459_2984722_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984728_2985481_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985532_2985718_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985993_2986458_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986489_2987149_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987293_2989402_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989398_2990349_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990452_2991073_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991176_2991917_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993051_2994176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994221_2994590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994831_2995782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996817_2997360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997745_2998696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998692_2999601_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999727_3000564_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001076_3002186_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002247_3003198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	3317012	3386193	4109543	protease,integrase,transposase,tRNA	Tupanvirus(25.0%)	51	3318102:3318120	3339039:3339057
WP_005012067.1|3317012_3317963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
3318102:3318120	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_077274087.1|3320828_3321323_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3321339_3322290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3322276_3322477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3322473_3323685_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_005012067.1|3325618_3326569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247951.1|3327702_3330459_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3330969_3332016_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3332357_3333485_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3333764_3334856_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3334928_3335711_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3335707_3336304_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_029443719.1|3336432_3337047_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931310.1|3337169_3338120_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_010931311.1|3338328_3339228_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
3339039:3339057	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_003818921.1|3339276_3339876_-	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931312.1|3339872_3341759_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010925978.1|3341757_3342585_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931313.1|3342675_3343629_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003808489.1|3343730_3345410_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003808487.1|3345421_3345631_+	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_010931314.1|3345640_3346549_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818930.1|3346731_3348030_+	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_003818932.1|3348138_3349452_+	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_010931315.1|3349577_3351539_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_010931316.1|3351618_3352941_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003818936.1|3352937_3353648_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931317.1|3353665_3355081_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003808465.1|3355172_3355784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931319.1|3356062_3357445_+	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808462.1|3357451_3359017_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931320.1|3359024_3360155_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|3360151_3361306_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931322.1|3361302_3362424_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|3362420_3364346_-	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931324.1|3364392_3365529_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931325.1|3365529_3366900_-	membrane protein	NA	NA	NA	NA	NA
WP_010930472.1|3366901_3367927_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931326.1|3367938_3369213_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_003808448.1|3369318_3370422_-	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931327.1|3371150_3371819_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_023994724.1|3371948_3372380_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931328.1|3372432_3373404_+	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003816386.1|3373434_3373932_+	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931330.1|3373895_3375353_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_010931331.1|3375535_3376861_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931332.1|3378638_3380204_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931333.1|3380249_3381191_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931334.1|3381193_3382081_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931335.1|3383668_3385144_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_023995489.1|3385242_3386193_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	3405104	3468937	4109543	transposase,tRNA	Staphylococcus_phage(12.5%)	47	NA	NA
WP_005012067.1|3405104_3406055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3406821_3407916_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407908_3409243_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3409196_3409880_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3409905_3411069_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3411065_3412067_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3412066_3412939_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412935_3413685_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3413681_3414473_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3414469_3415609_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415884_3416670_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3416703_3417486_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3417489_3417879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3419018_3419882_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3419917_3421006_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3421002_3421953_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3422306_3425285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3426211_3427090_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3429038_3429989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429985_3430453_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430495_3431266_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431286_3432087_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432097_3433507_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433601_3434387_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434626_3435643_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435750_3436143_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436280_3436961_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436965_3437937_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438032_3438983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3440487_3441189_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3441188_3442613_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3443682_3445023_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3445138_3446902_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447013_3447892_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3448004_3448820_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448823_3449075_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449159_3450176_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450506_3450728_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453088_3454006_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454503_3455712_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455791_3457363_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457480_3458416_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458604_3459549_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460116_3465834_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465839_3466967_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467022_3467649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467920_3468937_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	3473351	3540736	4109543	transposase,tRNA	Acinetobacter_phage(33.33%)	58	NA	NA
WP_019247745.1|3473351_3474224_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474573_3475713_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475709_3476369_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476440_3477073_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477102_3477621_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477631_3478741_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478787_3479642_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479643_3480546_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481768_3482719_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484475_3485465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485640_3486429_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486425_3487457_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487475_3488039_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488094_3489615_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489878_3490583_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490590_3491319_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491433_3491808_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491850_3493140_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493136_3494306_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494302_3495142_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495201_3496137_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496149_3497100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497198_3498161_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498192_3498552_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498676_3499579_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499580_3501353_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501387_3502164_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503487_3504438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815365.1|3505289_3505610_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003815364.1|3505682_3506564_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815363.1|3506680_3506923_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_010931385.1|3507060_3507531_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815348.1|3507543_3508083_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931386.1|3508117_3509659_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003817813.1|3509757_3510663_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931387.1|3510705_3512106_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003815341.1|3512115_3512538_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931388.1|3512720_3513605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931389.1|3513680_3514757_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_019247688.1|3515063_3517166_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931391.1|3517208_3519278_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_005012808.1|3519376_3520327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520455_3521589_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521632_3522538_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522540_3524241_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524237_3525158_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525165_3526143_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526201_3527236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529210_3529447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3529573_3530437_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530525_3531347_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531426_3532164_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532160_3533153_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533305_3533929_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533973_3535122_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537445_3538396_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538736_3539687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539785_3540736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	3709572	3842498	4109543	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	114	3754215:3754232	3798855:3798872
WP_005013747.1|3709572_3710523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3710519_3711155_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3711284_3712184_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3712279_3712771_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3712817_3713783_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3714916_3716158_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3716271_3717288_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3717322_3717799_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3717941_3718850_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3718963_3720076_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3720176_3720662_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3720798_3722049_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3722150_3722663_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3722761_3723712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3723777_3724716_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3724738_3725365_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3725361_3726018_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3726014_3726617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3726623_3727211_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3727391_3727961_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3728031_3729351_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3729457_3729649_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3729900_3731190_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3731344_3732340_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3732424_3733099_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3733095_3734046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3734207_3735449_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3735445_3736390_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3736508_3737459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3737418_3738348_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3738401_3738737_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3738781_3739546_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3739569_3740310_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3740317_3741871_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3741905_3742883_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3743155_3743737_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3743788_3750691_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3751137_3751269_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3751534_3751741_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3752745_3753405_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3753432_3754578_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3754215:3754232	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3754718_3755054_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3755128_3755989_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3756252_3756954_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3757123_3757519_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3757628_3758579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3758589_3759231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3759397_3759640_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3759738_3760689_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3760724_3761192_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3761425_3761803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3761799_3761982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3761985_3762972_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3762968_3763616_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3763673_3764201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3764237_3765422_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3765432_3765774_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3765886_3766087_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3766083_3767073_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3768559_3770530_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3770771_3771170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3771178_3772102_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3772559_3773510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3773740_3775432_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3775480_3775753_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3775749_3776121_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3776216_3776351_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3776756_3778166_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3778168_3779278_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3779372_3781826_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3781944_3782736_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3782855_3784283_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3784321_3785293_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3785711_3786875_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3786962_3787808_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3789364_3790315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3790869_3791244_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3791318_3792377_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3792400_3793351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3796232_3797402_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3797502_3799110_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3798855:3798872	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3799156_3801178_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3801206_3801452_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3801465_3802656_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3802851_3803817_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3803839_3804979_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3805190_3806153_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3806276_3808301_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3808497_3810741_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3811019_3811478_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3812405_3815027_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3815090_3817718_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3817869_3818934_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3818933_3819704_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3819712_3820546_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3820558_3821338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3821411_3822845_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3822872_3823631_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3823686_3825537_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3825630_3826107_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3826123_3827044_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3827150_3827651_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3828024_3828717_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_005012067.1|3829025_3829976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3829972_3833746_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3834082_3835972_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3835983_3836877_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3836980_3837778_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3837774_3838626_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3838687_3839368_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3839404_3839731_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3839731_3840691_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3840711_3841200_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3841481_3842498_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011727	Bordetella pertussis strain I271 chromosome, complete genome	4109543	4008611	4073523	4109543	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4008611_4009097_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009185_4009323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009315_4010296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010562_4011372_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011411_4012092_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012085_4012544_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012555_4012918_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013000_4013684_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013739_4014048_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014066_4014381_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014377_4016852_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016859_4018251_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018247_4018433_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018411_4019113_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019109_4019931_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019911_4021036_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021028_4022048_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022253_4023144_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023388_4024180_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024262_4024637_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024614_4026024_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026016_4027399_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027733_4029338_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029415_4030387_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030397_4031324_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_077089550.1|4031714_4032665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032834_4034061_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034260_4035127_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035119_4036082_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036182_4037133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037231_4038182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038280_4039231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039227_4040721_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040717_4043825_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043821_4046890_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046886_4048137_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048317_4049070_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049111_4049756_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049764_4050745_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050844_4051588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051670_4052018_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052115_4052958_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053002_4053890_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053916_4054105_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054202_4055660_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055646_4057173_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057191_4057659_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057658_4058681_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058801_4059542_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059596_4060697_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060698_4061889_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062008_4063025_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063343_4064015_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064011_4064920_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065131_4065779_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069639_4070707_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070717_4071527_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071616_4072390_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4072572_4073523_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
