The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	27282	70036	4104251	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	77634	136108	4104251	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_023999620.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	164893	225404	4104251	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	233336	286924	4104251	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	676449	737638	4104251	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|676449_677400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|677896_678766_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|678762_679584_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|679781_680273_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|680291_681365_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|681411_682515_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|682590_683211_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|683231_683741_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|683795_684047_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|684110_685244_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|685251_685638_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|685634_688154_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|688582_688921_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|688917_689424_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|689485_690286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|690396_691338_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|691431_692967_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|694646_696497_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|696500_697334_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|697333_698275_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|698526_699498_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|699639_701928_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|702234_703143_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|703197_704163_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|704237_705899_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|705970_706681_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|706829_707780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|708478_708862_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|708919_709522_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|709539_709941_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|710074_710968_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|710964_711546_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|712340_713075_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|713115_714165_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|714312_714891_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|715277_716255_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|716348_720743_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|720943_721792_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|721950_722763_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|722818_723769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|723867_724668_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|724729_725113_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|725124_726558_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|726764_727094_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|727096_727846_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|728028_728949_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|728995_729208_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|729230_729653_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|729669_730770_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|730866_732384_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|732459_733299_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|733320_734202_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|734283_735378_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|735671_736622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|736696_737638_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	742962	789153	4104251	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|742962_743988_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|744028_744268_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|744337_745927_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|745926_746475_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|746555_747128_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|747146_748058_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|748131_749100_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|749222_750296_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|750300_752121_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|752197_753148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|753236_753572_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|753705_754356_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|754377_755796_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|755865_756621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|756589_757348_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|757358_758240_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|758256_758964_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|758966_759725_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|759934_761677_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|761669_762194_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|762233_763028_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|763195_764269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|764367_765318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|765569_765776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|765847_766459_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|767013_767265_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|767257_767947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|768203_769154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|769793_770279_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|770265_771543_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|771545_772964_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|772992_774048_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|774053_774296_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|774418_775021_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|775449_776400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|777074_777326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|777388_777871_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|777872_778073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|778072_778468_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|778464_778863_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|778859_779282_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|779289_779790_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|780044_780563_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|780572_780902_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|780919_781210_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|781235_783848_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|783857_784217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|784284_784818_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|784814_785204_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|785196_789153_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	795319	850298	4104251	tRNA,transposase	Planktothrix_phage(50.0%)	47	NA	NA
WP_003814636.1|795319_797050_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|797102_797531_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|797533_798214_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|798213_798672_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|798708_799683_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|799699_801016_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|801047_801545_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|801631_802321_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|802320_803370_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|803366_804161_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|804329_804680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|804655_805213_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|806342_807293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|809430_810660_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|810662_812105_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|812209_813355_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|813386_814184_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|814208_815768_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|815764_818137_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|818246_819350_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|819349_820042_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|820185_820887_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|820871_821249_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|821980_822931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|823090_823963_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|824303_824522_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|824561_825941_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|825982_827380_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|827419_829072_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|829075_829960_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|829959_830901_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|830979_832599_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|832765_833581_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|833648_834218_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|834218_835169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|835823_836921_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|836954_838220_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|838377_839328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|839426_840377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|840620_841211_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|841226_843671_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|843790_844762_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|844893_845418_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|845377_846328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|846549_848745_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|848817_849246_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|849347_850298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	901891	950913	4104251	transposase,holin	Acinetobacter_phage(25.0%)	43	NA	NA
WP_005013747.1|901891_902842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|902940_903891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|903989_904646_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|904793_907502_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|907511_908531_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|908527_909478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|909576_910065_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|910061_910745_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|910774_914230_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|914265_915126_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|915254_916172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|916309_917290_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|917349_919140_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|919136_919913_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|919922_920441_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|920553_922824_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|923035_925267_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|925567_925897_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|925913_927398_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|927408_928911_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|928907_930920_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|930937_931246_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|931242_931890_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|931907_932396_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|932417_933491_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|933490_935818_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|935833_937201_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|937197_937692_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|937737_938994_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|938996_939620_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|939694_940171_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|940207_940567_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|940755_941913_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|942225_943176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|943193_943748_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|943749_944184_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|944180_944615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|944598_945402_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|945418_946234_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|946230_947046_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|947192_947894_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|947921_949880_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|949962_950913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	973936	1089749	4104251	transposase,holin	Bacillus_phage(12.5%)	98	NA	NA
WP_023994644.1|973936_974953_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|975149_976133_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|977731_979120_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|979150_980140_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|980250_981483_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|981764_982565_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|982587_984819_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|985606_986053_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|986074_986821_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|986964_987942_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|988575_989187_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|989180_990398_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|990538_991489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|991485_992205_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|992325_994485_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|994575_994845_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|995138_995666_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|995684_996464_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|996631_997648_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|997720_998212_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|998222_999938_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|1001101_1002052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|1002048_1003881_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|1004279_1004939_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|1005032_1005179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|1005287_1005455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|1005466_1006147_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|1006428_1007145_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|1007159_1008461_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|1010605_1013494_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|1013717_1015070_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|1015098_1015620_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|1015616_1017071_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|1017105_1017354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|1017459_1018335_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|1018360_1019416_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|1019428_1020220_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|1020252_1021623_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929969.1|1022799_1023750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1023848_1024799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|1024851_1025073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|1025232_1025445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|1025564_1026683_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|1027188_1027440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|1027552_1028503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|1028499_1028883_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|1028937_1030752_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|1030901_1031729_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|1031774_1032755_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|1032751_1032964_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|1032960_1034142_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|1034305_1035040_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|1035041_1037654_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|1037789_1039703_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|1040318_1040729_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|1040826_1041912_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|1042010_1042961_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|1042957_1043932_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|1044056_1044968_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|1045244_1045637_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|1045766_1046717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|1046746_1046929_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|1047701_1048883_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|1049098_1049776_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|1049772_1050498_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|1050623_1051205_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|1051575_1054257_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|1054256_1055390_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|1055382_1056468_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|1056554_1057454_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|1057450_1058779_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|1058793_1059465_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|1059652_1061368_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|1061369_1061729_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|1061920_1062235_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|1062277_1063498_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|1063494_1064436_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|1064432_1065422_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|1065456_1066041_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1066139_1067090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|1067170_1068082_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|1068142_1069288_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|1069307_1070222_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|1070293_1071043_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|1071042_1071972_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|1072215_1074042_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|1074124_1074766_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|1074988_1075990_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|1077826_1078891_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|1079688_1080597_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|1082084_1083359_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|1083512_1083893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|1083900_1084773_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|1085078_1085459_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|1085669_1086395_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1086490_1087441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1087545_1088595_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1088732_1089749_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	1113553	1168645	4104251	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1113553_1114504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1114602_1115343_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1115537_1117574_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1117591_1118602_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1118719_1119913_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1119942_1120716_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1120712_1121903_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1121928_1122867_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1122863_1125212_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1125366_1126008_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1126111_1127245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1127337_1127490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1127521_1128070_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1128088_1128574_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1128751_1129690_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1129692_1130010_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1130055_1131000_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1132680_1133331_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1133384_1133720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1133716_1134577_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1134593_1134875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1134948_1135212_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1135455_1136406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1136704_1137442_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1137877_1138201_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1138235_1138796_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1138916_1139792_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1139804_1140752_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1140853_1141147_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1141173_1143231_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1143245_1143746_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1143819_1145526_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1146389_1147442_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1147494_1147884_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1147892_1148525_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1148624_1149641_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1150429_1151479_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1151475_1153119_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1153115_1154003_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1154143_1154617_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1154606_1155629_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1155625_1157053_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1157990_1159007_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1159339_1160275_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1160324_1162205_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1162271_1162616_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1162760_1163897_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1163893_1164967_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1165124_1166561_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1166651_1167293_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1167628_1168645_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	1174635	1246656	4104251	protease,holin,transposase,tRNA	Planktothrix_phage(18.18%)	56	NA	NA
WP_003819794.1|1174635_1175049_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1175050_1175410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1175452_1176997_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1177080_1177911_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1177945_1179100_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1179142_1180015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1180131_1182420_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1183626_1184091_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1184117_1185068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1185435_1186212_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1186256_1187114_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1187135_1188152_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1188286_1189327_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1189521_1191603_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1191838_1193332_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1193562_1194357_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1194577_1195936_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1195932_1196775_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1196793_1198680_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1198621_1198873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1198917_1199550_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1199568_1200171_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1200322_1201273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1201853_1202561_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1202919_1203906_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1204045_1205059_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1205055_1206006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1206118_1206577_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1206613_1207927_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1207944_1208316_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1208312_1209776_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1209916_1210645_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1210626_1213476_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1213688_1214639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1214806_1215631_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1215630_1216509_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1217413_1218529_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1218557_1219352_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1219348_1221214_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1221292_1221925_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1221921_1222224_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1222266_1223787_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1223793_1224549_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1224578_1225683_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1225785_1227486_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1227467_1228445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1228454_1229735_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1229727_1230423_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1230456_1231284_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1231565_1234796_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1235531_1239458_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1242290_1243154_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1243153_1244122_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1244191_1245037_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1245104_1245659_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1245705_1246656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	1406076	1474563	4104251	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1406076_1407027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1407795_1408434_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1409323_1409770_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1409851_1410553_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1410553_1411321_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1411317_1412556_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1412555_1413482_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1413584_1414700_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1414715_1415666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1416019_1416601_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1416597_1417431_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1417641_1418955_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1419131_1420013_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1420032_1420884_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1420936_1422025_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1422135_1423263_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1423497_1424109_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1424207_1425158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1425379_1425757_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1425904_1426402_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1426398_1426926_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1427059_1427875_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1427887_1429069_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1429116_1430010_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1430136_1430607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1430732_1431560_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1431588_1432365_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1432361_1432637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1432651_1433116_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1433127_1433829_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1433938_1434439_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1434521_1435700_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1437327_1437663_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1437850_1439299_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1439356_1439701_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1439807_1440347_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1440439_1441390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1441488_1441896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1442128_1442560_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1442741_1443146_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1444382_1444706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1444708_1445596_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1445628_1446054_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1446125_1446479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1446718_1447225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1447263_1448595_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1448654_1449470_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1449466_1450321_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1453383_1455927_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1457293_1459048_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1459044_1461165_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1461169_1463365_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1463361_1466703_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1469505_1470456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1470521_1470701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1470817_1471573_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1471559_1472705_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1473612_1474563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	1535054	1590542	4104251	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1535054_1536005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1537206_1537653_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1537645_1539121_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1539117_1539873_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1539865_1540876_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1540865_1542542_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1542854_1543187_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1543200_1543596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1543605_1543932_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1543928_1544255_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1544181_1545204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1545200_1545551_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1545598_1546027_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1546034_1547408_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1547548_1547926_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1548188_1549496_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1549556_1550387_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1550383_1550872_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1550913_1552434_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1552477_1552954_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1553757_1556355_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1556384_1557206_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1557932_1558682_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1558865_1559744_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1559841_1560558_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1560572_1561133_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1561299_1562064_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1562083_1562941_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1562937_1564137_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1564176_1565511_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1565563_1567900_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1568025_1568589_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1568597_1569689_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1569760_1570216_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1570216_1571011_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1571007_1572189_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1572175_1572781_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1572777_1573551_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1573562_1574390_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1574551_1576915_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1576982_1577702_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1577825_1578251_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1578285_1579236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1579353_1580280_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1580345_1581503_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1581483_1581951_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1582098_1583049_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1583065_1583500_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1583489_1583840_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1584036_1585191_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1585187_1586360_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1586407_1587301_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1587346_1587784_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1587843_1588533_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1588542_1589493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1589591_1590542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	1883111	1931126	4104251	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1883111_1884062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1884160_1886761_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1886867_1887872_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1887980_1889321_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1889361_1890390_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1890585_1891131_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1891127_1891688_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1891786_1892737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1892774_1893362_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1893379_1893763_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1895122_1896415_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1896549_1897590_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1897687_1898704_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1898971_1899619_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1899744_1900503_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1900487_1901267_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1901284_1902169_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1902165_1902945_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1903049_1903649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1903937_1904690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1904808_1906209_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1906232_1906631_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1906806_1907007_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1907145_1907874_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1908007_1909423_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1909426_1910290_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1910302_1911052_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1911234_1913250_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1913231_1913900_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1914674_1915625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1915723_1916674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1916822_1917161_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1917218_1917380_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1917411_1917612_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1917877_1920451_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1920521_1923071_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1925621_1926110_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1926201_1927353_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1927406_1928228_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1928266_1929496_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1929624_1930065_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1930175_1931126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	1992688	2051958	4104251	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1992688_1993639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1993763_1994573_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1994773_1995724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1996997_1998215_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1999271_2000174_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2000250_2001123_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2001253_2001622_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2001679_2002726_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2002921_2004178_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2004182_2005520_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2005669_2006626_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2006728_2007661_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2007776_2008097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2008089_2008449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2008496_2010071_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2010123_2011068_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2011085_2011916_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2011908_2013543_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2013539_2014895_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2015801_2017379_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2017382_2018657_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2018754_2019129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2020844_2021978_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2022015_2022621_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2022617_2023436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2023507_2026132_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2026118_2026373_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2026439_2027021_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2027324_2027585_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2027750_2028374_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2028373_2029147_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2029143_2030352_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2030377_2030851_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2030924_2031875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2031973_2032924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2033022_2034372_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2035137_2035893_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2035985_2038868_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2039190_2039616_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2039643_2040792_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2040788_2041295_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2041301_2042597_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2042655_2043942_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2043943_2044582_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2044584_2045745_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2045771_2047127_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2047130_2048201_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2048339_2048576_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2048663_2049770_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2049735_2051040_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2051058_2051958_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2062198	2106521	4104251	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|2062198_2063149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2063247_2064198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2064397_2065483_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2065498_2066260_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2066256_2067216_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2067278_2067779_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2067811_2068555_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2068650_2068890_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2068903_2069056_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2069141_2070632_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2070723_2071662_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2071658_2071835_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2071837_2072500_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2074121_2074265_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2074261_2075236_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2075402_2076353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2076349_2077624_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2077727_2078921_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2078917_2079571_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2079567_2081004_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2080991_2081351_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2082165_2082306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2082323_2083274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2084319_2086185_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2086442_2087963_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2088050_2088701_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2089649_2090945_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2090966_2091851_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2091949_2092825_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2092814_2093171_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2093301_2094276_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2094405_2094585_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2094682_2095207_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2095217_2096054_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2096166_2096538_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2096534_2097086_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2097101_2098793_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2098841_2099522_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2099769_2100234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2100403_2101333_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2101345_2101993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2102066_2103884_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2103967_2104918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2105570_2106521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2135255	2199624	4104251	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2135255_2136206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2136427_2137378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2137476_2138442_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2138579_2139479_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2142073_2143561_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2143571_2144768_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2144840_2146160_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2146156_2147032_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2147062_2148211_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2148228_2148543_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2148564_2149287_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2149286_2150105_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2150109_2150637_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2150642_2151899_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2152257_2153397_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2153474_2154347_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2155217_2156168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2156127_2156763_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2157122_2158445_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2158763_2159585_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2161009_2161582_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2161621_2163451_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2163413_2164472_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2164509_2164971_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2165055_2165802_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2167292_2170523_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2170589_2171921_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2172173_2172548_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2172650_2173829_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2173839_2174430_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2174540_2175347_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2175372_2176167_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2177167_2178142_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2178300_2178813_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2178969_2179941_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2181685_2182492_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2182488_2183790_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2183740_2184505_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2184618_2185389_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2185473_2186661_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2186733_2187108_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2187208_2188471_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2188467_2189325_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2189497_2190499_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2190950_2191901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2193416_2194616_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2194984_2195221_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2195284_2195452_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2195565_2197371_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2197624_2198575_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2198673_2199624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2386092	2447440	4104251	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2386092_2387043_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2387159_2387879_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2388051_2389038_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2389038_2389521_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2389524_2390808_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2390804_2391743_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2391739_2393449_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2393458_2394706_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2396316_2397606_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2398743_2399502_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2400178_2400922_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2400996_2401737_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2401932_2402769_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2402819_2403590_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2403639_2404692_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2404688_2405315_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2405311_2406346_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2406524_2407541_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2407639_2408590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2411330_2412620_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2412738_2413176_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2413219_2414428_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2414574_2415039_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_054604408.1|2415062_2416013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2416997_2417771_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2417767_2418766_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2418850_2419627_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2419782_2421387_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2421767_2422892_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2423018_2423642_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2423638_2425540_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2425588_2426383_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2426395_2427397_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2427393_2427900_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2427892_2428741_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2428838_2429381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2429424_2430375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2430530_2430857_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2430853_2431138_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2431134_2431614_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2431610_2433239_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2433235_2433580_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2433579_2436513_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2437671_2438622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2438720_2439017_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2439123_2440041_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2440045_2440759_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2440772_2441744_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2443463_2443844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2443847_2445035_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2445458_2446196_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2446489_2447440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2468231	2539332	4104251	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2468231_2469182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2469734_2471360_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2471409_2472444_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2472446_2473793_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2473789_2475304_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2475294_2476305_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2476778_2477720_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2477728_2478697_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2480236_2481205_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2481382_2482372_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2482418_2483177_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2483366_2484104_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2484202_2485153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2485337_2486120_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2486113_2486815_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2487054_2487657_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2488983_2489934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2489930_2491487_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2491479_2492253_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2492311_2493262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2493343_2494519_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2496533_2497559_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2497570_2498860_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2498882_2499980_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2499976_2500867_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2500863_2502948_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2502979_2504149_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2504190_2504931_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2504930_2505701_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2506025_2506193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2506556_2507342_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2507368_2509453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2509620_2511576_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2511899_2512400_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2512498_2514025_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2514162_2515050_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2515064_2516018_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2516069_2518160_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2518175_2518562_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2521255_2522059_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2523352_2524255_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2524319_2525096_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2525417_2526467_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2526590_2528261_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2528265_2529060_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2529158_2530109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2530128_2531034_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2531111_2531810_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2531969_2532914_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2532923_2534411_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2534410_2535478_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2535541_2536954_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2537139_2538360_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2538381_2539332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2623532	2674704	4104251	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2623532_2624483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2624581_2625352_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2625348_2626020_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2626016_2626658_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2626670_2627591_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2627751_2628912_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2628953_2629904_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2630568_2630769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2630891_2632586_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2632707_2632977_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2633092_2633491_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2633501_2634458_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2634594_2635140_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2635160_2637110_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2637497_2638274_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2638279_2638672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2639093_2640044_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2640040_2641138_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2641169_2642120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2643901_2645143_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2645154_2645928_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2645954_2646905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2647003_2647786_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2647874_2649101_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2649826_2651212_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2651230_2651836_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2651832_2653689_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2653685_2654486_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2654500_2655694_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2655761_2656736_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2656858_2658082_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2658192_2660397_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2660691_2661351_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2661358_2661565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2661903_2662659_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2662674_2662836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2662929_2663445_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2663717_2664035_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2663979_2664624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2664749_2666105_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2666151_2667492_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2667593_2668226_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2668225_2670586_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2670627_2671587_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2671573_2672260_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2672256_2672589_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2672704_2673655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2673753_2674704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2772999	2813668	4104251	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2772999_2773950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2774060_2774243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2774342_2774939_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2775122_2776214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2776713_2777124_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2777182_2777524_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2777529_2779947_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2779959_2780982_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2781056_2781416_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2781431_2781629_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2781964_2782915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2783109_2783559_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2783555_2784506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2784616_2786065_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2786179_2786461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2786564_2787515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2787759_2788473_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2788595_2788823_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2789117_2789756_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2789864_2790899_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2790895_2791846_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2792261_2792786_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2792789_2793059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2793257_2794319_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2794402_2796037_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2796038_2796842_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2796870_2797830_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2797833_2799348_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2799384_2800389_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2800820_2801291_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2801326_2801938_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2801968_2802592_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2802672_2804205_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2804239_2805481_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2805524_2806556_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2806552_2807722_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2807715_2808396_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2808557_2809400_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2809562_2810534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2810705_2811584_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2811606_2812677_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2812717_2813668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2869133	2942003	4104251	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2869133_2869550_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2869660_2870293_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2870321_2870765_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2870786_2871878_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2871932_2872733_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2872868_2873489_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2873628_2874102_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2875241_2876192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2876188_2883850_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2884090_2888137_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2888449_2889031_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2889027_2890326_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2890405_2891434_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2891694_2892645_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2892641_2893592_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2893908_2894514_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2894567_2895881_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2895955_2896426_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2896425_2897214_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2897224_2898877_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2898964_2899915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2901076_2901583_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2901579_2902344_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2902359_2902644_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2902708_2903698_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2903869_2904799_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2904770_2905457_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2905490_2906036_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2906080_2907346_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2907342_2908245_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2909426_2910371_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2910465_2911983_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2912024_2913653_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2913760_2914642_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2917754_2918129_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2918153_2918492_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2918535_2920170_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2920208_2921555_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2921662_2923084_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2923153_2923738_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2923840_2924791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2924925_2926032_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2926042_2927140_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2927284_2928490_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2928496_2929018_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2929014_2929506_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2929502_2929754_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2929734_2930220_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2930355_2933817_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2933834_2934719_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2934728_2935160_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2935406_2935910_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2935987_2937388_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2937462_2938338_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2938334_2939342_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2939809_2940115_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2940205_2940796_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2940986_2942003_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	2945146	3011957	4104251	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2945146_2946097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2946195_2947146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2947142_2947937_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2947968_2948673_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2948747_2949548_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2949544_2949952_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2949948_2950590_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2950582_2952583_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2953843_2955175_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2955171_2956122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2957828_2958095_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2958802_2959141_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2963694_2964297_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2964393_2965683_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2965740_2966472_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2966468_2967272_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2967268_2968357_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2968353_2969283_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2969431_2970577_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2970598_2971549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2971879_2975701_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2975857_2976526_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2976530_2978204_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2978222_2979542_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2979546_2981862_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2981917_2984086_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2984082_2989272_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2989361_2989676_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2989903_2990149_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2990243_2990762_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2990861_2992067_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2992182_2993580_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2993696_2994275_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2994347_2995739_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2995906_2996857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2997137_2997758_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2997754_2998168_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2998164_2999208_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2999263_2999452_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2999461_3000226_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3000316_3000973_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3001064_3001823_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3001848_3003450_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3003650_3004655_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3004755_3005019_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|3005136_3005913_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3006503_3007454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3009837_3010950_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|3011006_3011957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	3042343	3087083	4104251	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|3042343_3043294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|3043414_3044311_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|3046588_3048814_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|3048978_3050067_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|3050023_3050677_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|3050724_3051522_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|3052053_3053004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|3053078_3054233_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3054289_3055240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3055338_3055644_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3055672_3056107_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3056108_3057353_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3057349_3058060_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3058074_3058986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|3059355_3060306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|3060397_3060802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3060798_3061257_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|3061263_3062172_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|3062168_3063035_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3063021_3063849_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3063859_3064987_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_077069107.1|3066064_3067303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3067344_3068607_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3068613_3069366_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3069417_3069603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3069878_3070343_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3070374_3071034_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3071178_3073287_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3073283_3074234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3074337_3074958_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|3075049_3075802_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3076936_3078061_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3078106_3078475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3078716_3079667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3080702_3081245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3081630_3082581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3082577_3083543_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3083612_3084449_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3084961_3086071_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3086132_3087083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	3467029	3520770	4104251	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_010929956.1|3467029_3467980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3468384_3469029_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3469053_3469638_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3469738_3470356_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3470358_3472074_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3472070_3472379_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3472395_3473013_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3473057_3473360_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3473460_3474315_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3474502_3474727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3474896_3475169_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3475586_3475994_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3476363_3477158_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3477258_3478494_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3478562_3479579_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3479590_3480967_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3480963_3482160_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3482156_3483695_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3483691_3484951_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3486891_3487842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3488608_3489703_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3489695_3491030_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3490983_3491667_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3491692_3492856_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3492852_3493854_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3493853_3494726_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3494722_3495472_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3495468_3496260_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3496256_3497396_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3497671_3498457_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3498490_3499273_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3499276_3499666_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3500805_3501669_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3501704_3502793_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3502789_3503740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3504093_3507072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3507998_3508877_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3510825_3511776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3511772_3512240_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3512282_3513053_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3513073_3513874_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3513884_3515294_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3515388_3516174_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3516413_3517430_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3517537_3517930_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3518067_3518748_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3518752_3519724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3519819_3520770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	3526925	3586225	4104251	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3526925_3528689_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3528800_3529679_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3529791_3530607_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3530610_3530862_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3530946_3531963_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3532293_3532515_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3534875_3535793_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3536290_3537499_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3537578_3539150_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3539267_3540203_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3540391_3541336_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3541903_3547621_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3547626_3548754_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3548809_3549436_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3549707_3550724_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3550819_3551530_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3551526_3552516_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3552611_3554243_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3554245_3554983_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3555138_3556011_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3556279_3557500_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3557496_3558156_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3558227_3558860_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3558889_3559408_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3559418_3560528_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3560574_3561429_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3561430_3562333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3563555_3564506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3566262_3567252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3567248_3567407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3567427_3568216_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3568212_3569244_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3569262_3569826_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3569881_3571402_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3571665_3572370_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3572377_3573115_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3573220_3573595_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3573637_3574927_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3574923_3576093_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3576089_3576929_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3576988_3577924_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3577936_3578887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3578985_3579948_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3579979_3580339_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3580463_3581366_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3581367_3583140_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3583174_3583951_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_077069109.1|3585274_3586225_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	3601163	3661469	4104251	protease,transposase,tRNA	Planktothrix_phage(11.11%)	49	NA	NA
WP_005012808.1|3601163_3602114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3602242_3603376_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3603419_3604325_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3604327_3606028_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3606024_3606945_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3606952_3607930_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3607988_3609023_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3610997_3611234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3611360_3612224_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3612312_3613134_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3613213_3613951_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3613947_3614940_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3615053_3615716_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3615760_3616909_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3619232_3620183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3620523_3621474_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3621572_3622523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3622819_3623317_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3623359_3625135_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3625142_3626009_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3626015_3626750_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3627919_3628714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3629003_3629594_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3629627_3630956_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3631030_3632176_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3632287_3633286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3633248_3633683_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3635199_3636084_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3636080_3637286_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3637282_3638143_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3638255_3640046_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3640086_3640752_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3640752_3641061_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3641226_3642513_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3643946_3644897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3646848_3648063_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3648168_3649158_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3649154_3649763_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3649775_3650405_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3650401_3651022_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3651053_3651845_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3652696_3653152_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3653170_3654097_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3654150_3655437_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3656367_3657240_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3657236_3658187_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3658285_3659236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929912.1|3659232_3660027_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_010929911.1|3660023_3661469_-|protease	protease CptA	protease	A0A0R6PIZ1	Moraxella_phage	26.1	6.0e-20
>prophage 30
NZ_CP011724	Bordetella pertussis strain I257 chromosome, complete genome	4104251	4026422	4079854	4104251	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4026422_4027373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027542_4028769_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028968_4029835_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029827_4030790_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030890_4031841_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031939_4032890_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032988_4033939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033935_4035429_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035425_4038533_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038529_4041598_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041594_4042845_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043025_4043787_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043819_4044470_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044472_4045312_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045552_4046296_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4046378_4046726_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046823_4047666_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047710_4048598_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048624_4048813_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048910_4050368_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050354_4051881_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051899_4052367_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4052366_4053389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4053509_4054229_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4054304_4055405_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055406_4056597_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056716_4057733_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058051_4058723_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058719_4059628_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059839_4060487_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064338_4065415_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065425_4066235_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066324_4067098_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4067280_4068231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4068119_4069142_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4069131_4070286_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4070325_4071738_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071862_4072729_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072730_4073555_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4073551_4074313_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4074393_4075080_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4075253_4076261_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4076257_4077037_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4077094_4078357_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078903_4079854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
