The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	27282	70036	4107454	tRNA,transposase	Synechococcus_phage(50.0%)	43	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023997043.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077105927.1|68684_69068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	77634	136108	4107454	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	164894	225405	4107454	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446321.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	233337	287976	4107454	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|235321_236272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023999816.1|266623_267961_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268134_268680_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268805_270383_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270398_271553_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271566_271692_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271688_273440_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273436_275116_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275178_275727_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276869_277148_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278191_279142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|279420_279582_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280248_280698_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280707_281319_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281477_282326_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282351_283734_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283798_284440_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284579_285038_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285062_285839_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285892_287029_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287025_287976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	556361	615661	4107454	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|556361_557312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558635_559412_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559446_561219_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561220_562123_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562247_562607_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562638_563601_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563699_564650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564662_565598_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565657_566497_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566493_567663_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567659_568949_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568991_569366_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569480_570209_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570216_570921_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571184_572705_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572760_573324_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573342_574374_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574370_575159_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575334_576324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578080_579031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580253_581156_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581157_582012_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582058_583168_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583178_583697_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583726_584359_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584430_585090_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585086_586226_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586575_587448_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587603_588341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588343_589975_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590070_591060_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591056_591767_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591862_592879_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593150_593777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593832_594960_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594965_600683_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601250_602195_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602383_603319_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603436_605008_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605087_606296_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606793_607711_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610071_610293_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610623_611640_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611724_611976_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611979_612795_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612907_613786_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613897_615661_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	621816	675557	4107454	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621816_622767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622862_623834_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623838_624519_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624656_625049_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625156_626173_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626412_627198_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627292_628702_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628712_629513_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629533_630304_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630346_630814_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630810_631761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633709_634588_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635514_638493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638846_639797_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639793_640882_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640917_641781_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642920_643310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643313_644096_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644129_644915_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645190_646330_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646326_647118_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647114_647864_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647860_648733_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648732_649734_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649730_650894_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650919_651603_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651556_652891_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652883_653978_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654744_655695_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657635_658895_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658891_660430_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660426_661623_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661619_662996_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663007_664024_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664092_665328_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665428_666223_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666592_667000_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667417_667690_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667859_668084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668271_669126_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669226_669529_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669573_670191_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670207_670516_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670512_672228_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672230_672848_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672948_673533_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673557_674202_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674606_675557_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	724495	764445	4107454	tRNA,integrase,protease,transposase	Pseudomonas_phage(33.33%)	29	721743:721761	741631:741649
721743:721761	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724495_725092_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725088_725871_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725943_727035_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727314_728442_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728783_729830_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730340_733097_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733098_736050_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736065_737277_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737273_737474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737460_738411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738427_738922_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738925_739183_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739726_740638_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740719_741004_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741787_742738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741631:741649	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743156_745721_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745765_747619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747951_749523_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750964_751915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|752000_752741_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752967_753915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755302_756253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|756446_757262_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757394_758834_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758847_759189_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759243_760899_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761050_762061_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762193_762967_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763494_764445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	774372	821990	4107454	tRNA,holin,protease,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|774372_775323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775461_776214_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|776488_778177_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|778196_779456_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779470_780565_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|780561_782625_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|782700_783381_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783658_785032_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785033_786053_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786116_787088_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787152_788103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788201_789044_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789043_789379_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789449_790868_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791147_792188_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792267_792519_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792629_793793_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794076_794931_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794927_795818_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795860_796772_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796798_797491_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797505_798486_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798498_800640_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800688_801657_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801647_802316_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802276_803212_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803208_804105_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804101_804824_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804814_804979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805152_805656_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805932_807048_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807190_807655_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807802_808342_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808363_809698_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809711_810017_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810441_811023_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811104_812055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812153_813104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813544_814450_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814505_816113_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816366_817872_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817886_818351_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818640_819591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819753_820284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820283_820595_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821039_821990_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	997850	1100243	4107454	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|997850_998966_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999066_999885_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999982_1000594_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000753_1002130_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002192_1002651_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002735_1003431_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003492_1003774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004336_1005089_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005133_1006210_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006206_1007157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007259_1007922_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008016_1008187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008539_1009541_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009543_1010740_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010760_1011564_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011644_1011941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011971_1012535_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012575_1013433_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013440_1014190_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014211_1015084_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015112_1015892_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015925_1016723_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019377_1019770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019763_1020624_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020627_1021590_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022366_1023056_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023916_1024867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025216_1026086_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026156_1026852_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026841_1027351_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027347_1028568_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028515_1029418_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030304_1031591_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031629_1033003_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033041_1033743_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034041_1035031_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035131_1035593_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035608_1036157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036298_1037774_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037879_1038971_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038974_1039757_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039766_1040555_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041680_1042115_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042111_1043122_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043165_1044092_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044378_1044747_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044963_1045914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045958_1048385_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048433_1049126_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049198_1050398_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050415_1051321_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051436_1052366_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052391_1053738_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053750_1054515_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054528_1055311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055503_1056454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056515_1057625_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058137_1058974_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059100_1060009_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060005_1060956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061341_1061884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062919_1063870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064111_1064480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064525_1065650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066784_1067525_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067628_1068249_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068352_1069303_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069299_1071408_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071552_1072212_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072243_1072708_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072983_1073169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073220_1073973_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073979_1075242_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075283_1076522_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077599_1078727_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078737_1079565_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079551_1080418_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081784_1082189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082280_1083231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083600_1084512_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084526_1085237_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085233_1086478_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086479_1086914_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086942_1087248_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087346_1088297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088353_1089502_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089582_1090533_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091064_1091862_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091909_1092563_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092519_1093608_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093772_1095998_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098275_1099172_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099292_1100243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1130629	1201600	4107454	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130629_1131580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131636_1132749_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135132_1136083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136673_1137450_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137567_1137831_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137931_1138936_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139136_1140738_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140763_1141522_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141613_1142270_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142360_1143125_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143134_1143323_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143378_1144422_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144418_1144832_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144828_1145449_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145729_1146680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146847_1148239_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148311_1148890_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149006_1150404_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150519_1151725_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151824_1152343_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152437_1152683_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152910_1153225_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153323_1158504_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158500_1160669_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160724_1163040_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163044_1164364_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164382_1166056_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166060_1166729_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166885_1170707_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171037_1171988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172009_1173155_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173303_1174233_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174229_1175318_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175314_1176118_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176114_1176846_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176903_1178193_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178289_1178892_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183445_1183784_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184491_1184758_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186464_1187415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187411_1188743_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190003_1192004_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191996_1192638_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192634_1193042_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193038_1193839_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193913_1194618_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194649_1195444_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195440_1196391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196489_1197440_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197538_1197973_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198055_1200392_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200583_1201600_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1242671	1324806	4107454	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_010929591.1|1242671_1243622_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1243709_1245362_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1245372_1246161_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1246160_1246631_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1246705_1248019_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1248072_1248678_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010927663.1|1248994_1249945_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249941_1250892_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251152_1252181_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252260_1253559_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253555_1254137_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254449_1258496_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_062826587.1|1258736_1266398_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266394_1267345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268484_1268958_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269097_1269718_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269853_1270654_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270708_1271800_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271821_1272265_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272293_1272926_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273036_1273453_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273445_1274138_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274244_1274619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274695_1275505_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275600_1276545_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276583_1277555_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277645_1278083_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278141_1279023_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280026_1280887_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280919_1282302_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282298_1283318_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283690_1284185_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284192_1284933_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285013_1286618_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286657_1287446_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287571_1289737_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290617_1291430_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291442_1291751_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291868_1293599_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293600_1294803_-	lipoprotein	NA	NA	NA	NA	NA
WP_003810957.1|1295664_1296132_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296267_1297650_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297646_1298771_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298767_1301404_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301819_1302770_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306516_1307128_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307350_1308811_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308907_1310500_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310853_1311111_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311112_1312453_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312548_1313238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313250_1314681_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316405_1317227_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317237_1318809_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318837_1319815_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319841_1320645_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320641_1321436_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321443_1322679_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322692_1323106_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323855_1324806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1328917	1369586	4107454	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_005013747.1|1328917_1329868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1329908_1330979_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1331001_1331880_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1332051_1333023_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1333185_1334028_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1334189_1334870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1334863_1336033_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1336029_1337061_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1337128_1338346_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1338380_1339913_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1339993_1340617_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1340647_1341259_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1341294_1341765_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1342196_1343201_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1343237_1344752_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1344755_1345715_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1345743_1346547_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1346548_1348183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1348266_1349328_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1349526_1349796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1349799_1350324_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1350739_1351690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1351686_1352721_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1352829_1353468_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1353762_1353990_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1354112_1354826_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1355070_1356021_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1356160_1356406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1356520_1357969_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1358079_1359030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1359026_1359476_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1359670_1360621_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1360956_1361154_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1361169_1361529_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1361603_1362626_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1362638_1365056_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1365073_1365403_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1365461_1365872_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1366371_1367463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1367646_1368243_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1368342_1368525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1368635_1369586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1449263	1513479	4107454	tRNA,protease,transposase	Salmonella_phage(16.67%)	59	NA	NA
WP_005013747.1|1449263_1450214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450380_1450734_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450746_1451109_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451150_1451576_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_057110980.1|1451778_1453035_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453233_1454214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454363_1455605_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455703_1456654_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456662_1457358_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460179_1460779_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460789_1462955_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462978_1464763_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464762_1464852_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465546_1465819_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465818_1467885_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467881_1468832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468930_1469881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469996_1470329_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470325_1471012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470998_1471958_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1471990_1474360_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474359_1474992_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475093_1476434_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476480_1477836_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478126_1478363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478550_1478868_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479140_1479656_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479926_1480682_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481020_1481227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481234_1481894_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482188_1484393_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484503_1485727_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485849_1486824_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486891_1488085_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488099_1488900_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488896_1490753_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490749_1491355_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491373_1492759_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493484_1494711_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494799_1495582_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495680_1496631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496657_1497431_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497442_1498684_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1500500_1501328_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1501329_1502040_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1502036_1502636_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1502744_1503338_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1503389_1503572_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1503628_1504687_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1504686_1505673_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1505754_1506690_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1506691_1507444_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1507626_1507866_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1508055_1509285_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1509286_1509787_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1509783_1510383_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1510395_1510896_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1510895_1511954_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_004566381.1|1511991_1513479_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 15
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1744263	1801542	4107454	tRNA,transposase	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|1744263_1745214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1745312_1747913_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1748019_1749024_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1749132_1750473_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1750513_1751542_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1751737_1752283_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1752279_1752840_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1752938_1753889_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1753926_1754514_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1754531_1754915_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1756274_1757567_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1757701_1758742_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1758839_1759856_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1760123_1760759_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1760896_1761655_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1761639_1762419_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1762436_1763321_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1763317_1764097_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1764123_1764801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1765089_1765842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1765960_1767361_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1767384_1767783_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1767958_1768159_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1768297_1769026_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1769159_1770575_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1770578_1771442_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1771454_1772204_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1772446_1774402_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1774383_1775052_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1775826_1776777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1776925_1777264_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1777321_1777483_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1777514_1777715_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1777980_1780554_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1780624_1783174_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1785724_1786213_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1786304_1787456_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1787509_1788331_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1788369_1789599_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1789727_1790168_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1790278_1791229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1791225_1791699_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1791860_1792799_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1792800_1794009_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1794113_1794620_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1794622_1797484_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1797473_1798439_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1798498_1800493_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1800591_1801542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1852791	1922203	4107454	tRNA,protease,transposase	Klosneuvirus(22.22%)	60	NA	NA
WP_005013747.1|1852791_1853742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1853866_1854676_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1854876_1855827_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1857100_1858318_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1859374_1860277_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1860353_1861226_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1861356_1861725_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1861782_1862829_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1863024_1864281_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1864285_1865623_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1865772_1866729_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1866831_1867764_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1867879_1868200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1868192_1868552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1868599_1870174_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1870226_1871171_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1871188_1872019_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1872011_1873646_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1873642_1874998_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1875904_1877482_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1877485_1878760_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1878857_1879232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1880947_1882081_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1882118_1882724_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1882720_1883539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1883610_1886235_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1886221_1886476_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1886542_1887124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1887427_1887688_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1887853_1888477_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1888476_1889250_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1889246_1890455_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1890480_1890954_-	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1891027_1891978_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1892076_1893426_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1894191_1894947_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1895039_1897922_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1898244_1898670_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1898697_1899846_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1899842_1900349_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1900364_1901651_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1901700_1902996_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1902997_1903636_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_057110966.1|1903641_1904799_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1904825_1906181_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1906184_1907255_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1907393_1907630_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1907717_1908824_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1908789_1910094_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1910112_1911012_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1911195_1912353_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1912429_1913725_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1913838_1914378_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1914655_1914868_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1914887_1916918_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1916943_1917138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1917603_1919886_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1920295_1920595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1920879_1921293_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1921252_1922203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1933407	1982809	4107454	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1933407_1934358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1934354_1935629_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1935732_1936926_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1936922_1937576_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1937572_1939009_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1938996_1939356_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1940170_1940311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1940328_1941279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1942324_1944190_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1944447_1945968_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1946055_1946706_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1947654_1948950_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1948971_1949856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1949954_1950830_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1950819_1951176_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1951306_1952281_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1952410_1952590_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1952687_1953212_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1953222_1954059_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1954171_1954543_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1954539_1955091_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1955106_1956798_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1956846_1957527_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1957774_1958239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1958408_1959338_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1959350_1959998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1960071_1961889_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1961972_1962923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1963575_1964526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1964544_1964892_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1964920_1966360_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1966378_1966774_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1966948_1967557_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1967569_1968388_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1968339_1969314_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1969342_1970404_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1970400_1972617_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1972630_1973089_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1973246_1973591_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1973747_1974653_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1974739_1975753_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1977732_1978749_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|1978891_1980244_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|1980418_1980715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1981858_1982809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	1994305	2058674	4107454	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1994305_1995256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1995477_1996428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1996526_1997492_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1997629_1998529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2001123_2002611_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2002621_2003818_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2003890_2005210_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2005206_2006082_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2006112_2007261_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2007278_2007593_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2007614_2008337_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2008336_2009155_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2009159_2009687_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2009692_2010949_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2011307_2012447_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2012524_2013397_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2014267_2015218_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2015177_2015813_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2016172_2017495_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2017813_2018635_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2020059_2020632_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2020671_2022501_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2022463_2023522_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2023559_2024021_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2024105_2024852_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2026342_2029573_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2029639_2030971_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2031223_2031598_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2031700_2032879_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2032889_2033480_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2033590_2034397_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2034422_2035217_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2036217_2037192_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2037350_2037863_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2038019_2038991_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2040735_2041542_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2041538_2042840_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2042790_2043555_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2043668_2044439_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2044523_2045711_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2045783_2046158_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2046258_2047521_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2047517_2048375_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2048547_2049549_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2050000_2050951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2052514_2053666_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2054034_2054271_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2054334_2054502_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2054615_2056511_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2056674_2057625_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2057723_2058674_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	2245142	2306490	4107454	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2245142_2246093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2246209_2246929_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2247101_2248088_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2248088_2248571_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2248574_2249858_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2249854_2250793_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2250789_2252499_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2252508_2253756_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2255366_2256656_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2257793_2258567_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2259228_2259972_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2260046_2260787_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2260982_2261819_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2261869_2262640_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2262689_2263742_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2263738_2264365_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2264361_2265396_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2265574_2266591_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2266689_2267640_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2270380_2271670_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2271788_2272226_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2272269_2273478_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2273624_2274089_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2274112_2275063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2276047_2276821_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2276817_2277816_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2277900_2278677_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2278832_2280437_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2280817_2281942_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2282068_2282692_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2282688_2284590_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2284638_2285433_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2285445_2286447_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2286443_2286893_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2286942_2287791_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2287888_2288431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2288474_2289425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2289580_2289907_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2289903_2290185_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2290184_2290664_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2290660_2292289_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2292285_2292630_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2292629_2295563_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2296721_2297672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2297770_2298067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2298173_2299091_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2299095_2299809_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2299822_2300794_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2302543_2302894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2302897_2304085_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2304523_2305246_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2305539_2306490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	2327281	2398435	4107454	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2327281_2328232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2328784_2330410_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2330459_2331494_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2331496_2332843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2332839_2334354_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2334344_2335355_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2335828_2336770_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2336778_2337747_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2339286_2340255_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2340432_2341422_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2341468_2342227_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2342416_2343154_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2343252_2344203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2344387_2345170_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2345163_2345865_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2346104_2346707_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2348033_2348984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2348980_2350537_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2350529_2351303_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2351361_2352312_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2352393_2353569_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2353582_2355640_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2355636_2356662_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2356673_2357963_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2357985_2359083_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2359079_2359970_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2359966_2362051_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2362082_2363252_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2363293_2364034_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2364033_2364804_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2365659_2366445_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2366471_2368556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2368723_2370679_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2371002_2371503_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2371601_2373128_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2373265_2374153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2374167_2375121_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2375172_2377263_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2377278_2377665_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2380358_2381162_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2382455_2383358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2383422_2384199_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2384520_2385570_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2385693_2387364_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2387368_2388163_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2388261_2389212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2389231_2390137_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2390214_2390913_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2391072_2392017_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2392026_2393514_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2393513_2394581_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2394644_2396057_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2396242_2397463_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2397484_2398435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	2495312	2554093	4107454	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2495312_2497262_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2497649_2498426_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2498431_2498824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2499245_2500196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2500192_2501290_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2501321_2502272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2504053_2505295_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2505306_2506080_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2506106_2507057_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507536_2508193_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508207_2509875_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509877_2510507_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510718_2511813_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511957_2512770_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2512773_2514357_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2514527_2515658_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515844_2516921_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2517002_2517653_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517667_2519071_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519354_2520173_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2520169_2520874_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521773_2522889_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522922_2523297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523319_2524477_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524489_2524723_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525357_2528327_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528341_2528551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528702_2529332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2529328_2531386_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531442_2532123_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532119_2532680_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532686_2533784_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533936_2534530_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534526_2535819_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535832_2536375_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536384_2537221_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537254_2538316_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538357_2539410_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539425_2539728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539869_2540820_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2540998_2542693_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542689_2543775_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543822_2544722_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544732_2545377_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546398_2549641_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549651_2550806_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551032_2551995_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552093_2553044_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553142_2554093_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	2607679	2674179	4107454	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2607679_2608630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608999_2609572_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609574_2610585_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610577_2611078_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611088_2611430_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2611498_2612233_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612249_2612519_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612541_2613330_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613376_2614393_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614609_2616052_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616230_2617850_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617970_2619791_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619869_2621402_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2621435_2623082_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623151_2624174_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624191_2625325_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625327_2626017_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2626016_2626802_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626845_2627610_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627648_2629070_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629135_2629840_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629887_2630307_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630319_2630727_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2630910_2631621_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2631747_2632038_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632055_2632538_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637043_2638198_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010929632.1|2638503_2639520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639766_2640555_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640621_2641302_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641298_2642069_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642167_2643118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643173_2644091_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644101_2645280_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645299_2646295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647883_2648492_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648479_2649520_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649537_2650500_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650496_2651690_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651686_2652484_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652509_2653496_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653514_2655554_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655755_2656436_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656449_2657361_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657357_2657936_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658074_2658980_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658987_2662407_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662394_2664995_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665950_2666583_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666976_2667735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667731_2668934_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669121_2670072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670979_2672125_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672111_2672867_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672983_2673163_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673228_2674179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	2856582	3007181	4107454	tRNA,holin,transposase	uncultured_Mediterranean_phage(15.79%)	117	NA	NA
WP_010929956.1|2856582_2857533_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857631_2858513_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858590_2859970_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2860008_2860854_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860869_2861184_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861216_2861753_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861925_2862501_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862603_2863341_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863408_2865046_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865153_2865909_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865896_2866859_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866966_2867761_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867822_2869898_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870062_2872438_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872518_2873874_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875352_2876075_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876129_2877113_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877242_2878193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878189_2879092_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879179_2879938_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879950_2881042_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881139_2882567_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882796_2884011_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884056_2886927_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889337_2889826_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889951_2892648_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892802_2895085_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895249_2895882_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895980_2896931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896977_2897532_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897599_2898445_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898514_2899483_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2899482_2901279_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2903178_2907105_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907840_2911071_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911352_2912180_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912213_2912909_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912901_2914182_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914191_2915169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915150_2916851_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916953_2918057_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918087_2918843_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918849_2920370_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920412_2920715_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920711_2921344_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921422_2923288_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923284_2924079_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924107_2925223_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926127_2927006_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2927005_2927830_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927997_2928948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929160_2932010_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931991_2932720_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932860_2934324_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934320_2934692_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934709_2936023_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936059_2936518_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2936630_2937581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937577_2938591_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938730_2939717_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940075_2940783_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941363_2942314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942465_2943068_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943086_2943719_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943763_2944015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943956_2945843_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945861_2946704_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946700_2948059_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948279_2949074_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949304_2950798_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951033_2953115_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953309_2954350_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954484_2955501_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955522_2956380_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956424_2957201_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2957568_2958519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958545_2959010_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960216_2962505_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962621_2963494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963536_2964691_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964725_2965556_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965639_2967184_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967226_2967586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967587_2968001_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968041_2968359_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968443_2969160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969423_2970845_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970911_2973659_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2973991_2975008_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975343_2975985_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976075_2977512_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977669_2978743_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978739_2979876_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2980020_2980365_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980431_2982312_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982361_2983297_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983629_2984646_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985583_2987011_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2987007_2988030_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2988019_2988493_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988633_2989521_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989517_2991161_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991157_2992165_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_023853536.1|2992995_2994012_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994111_2994744_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994752_2995142_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995194_2996247_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997110_2998817_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998890_2999391_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999405_3001463_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001489_3001783_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001884_3002832_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002844_3003720_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003840_3004401_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004435_3004759_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005194_3005932_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006230_3007181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	3028132	3100626	4107454	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3028132_3029083_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029125_3030301_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030522_3032313_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032325_3033987_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033999_3036705_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036997_3038752_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038748_3039375_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039371_3040223_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040352_3042413_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042599_3043214_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043359_3043611_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043680_3045063_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045059_3048239_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049046_3049964_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050015_3050747_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050806_3051379_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052887_3053904_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054041_3055091_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055195_3056146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056241_3056967_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057177_3057558_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057863_3058736_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058743_3059124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059277_3060552_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062039_3062948_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063745_3064810_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3066646_3067681_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067870_3068512_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068594_3070421_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070664_3071594_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071593_3072343_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072414_3073329_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073348_3074494_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074554_3075466_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075546_3076497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076595_3077180_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077214_3078204_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078200_3079142_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079138_3080359_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080401_3080716_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080907_3081267_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081268_3082984_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083171_3083843_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083857_3085186_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085182_3086082_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086168_3087254_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087246_3088377_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088379_3091061_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091431_3092013_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092138_3092864_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092860_3093538_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093753_3094935_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095707_3095890_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095919_3096870_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096999_3097392_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097668_3098580_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098704_3099679_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099675_3100626_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	3232109	3347317	4107454	tRNA,transposase	Planktothrix_phage(30.0%)	95	NA	NA
WP_010929969.1|3232109_3233060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|3233158_3234109_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234105_3235125_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235134_3237843_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237990_3238647_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238745_3239696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3239843_3240737_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3240936_3242631_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3242665_3243592_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3243660_3244758_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3244776_3245640_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3245651_3246434_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3246430_3247549_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3247545_3249078_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3249118_3250126_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3250270_3250993_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3251008_3252031_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3252347_3253082_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3253166_3254912_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3254908_3255661_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3255705_3256662_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3256750_3257317_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3257324_3258185_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3258214_3258943_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3258974_3259658_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3260495_3261410_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3261474_3262383_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3262473_3263898_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3263899_3265222_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3265218_3267357_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3267434_3272555_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3272655_3272964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3273033_3273591_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3273606_3275088_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3275142_3276996_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3277258_3278596_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3278630_3280628_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3280645_3282694_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3282824_3283691_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077105933.1|3283959_3284925_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3285039_3286188_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3286612_3286924_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3286957_3287218_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3287367_3288501_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3288571_3289708_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3289873_3290668_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3290730_3291174_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3291289_3292240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3292362_3292770_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3292842_3295038_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3295259_3296210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3296308_3297259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297218_3297743_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297874_3298846_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298965_3301410_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301425_3302016_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302259_3303210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303367_3304633_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304666_3305764_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3306418_3307369_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3307369_3307939_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3308006_3308822_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3308988_3310608_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3310686_3311628_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3311627_3312512_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3312515_3314168_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3314207_3315605_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3315646_3317026_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3317065_3317284_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3317624_3318497_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3318656_3319607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3319705_3320656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3321387_3321765_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3321749_3322451_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3322594_3323287_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3323286_3324390_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3324499_3326872_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3326868_3328428_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3328452_3329250_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3329281_3330427_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3330531_3331974_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3331976_3333206_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3335343_3336294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3337423_3337981_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3337956_3338307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3338475_3339270_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3339266_3340316_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3340315_3341005_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3341091_3341589_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3341620_3342937_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3342953_3343928_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3343964_3344423_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3344422_3345103_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3345105_3345534_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3345586_3347317_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
>prophage 26
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	3353483	3411770	4107454	tRNA,tail,protease,transposase,terminase	uncultured_Caudovirales_phage(17.39%)	61	NA	NA
WP_010931429.1|3353483_3357440_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3357432_3357822_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3357818_3358352_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3358419_3358779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3358788_3361401_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3361426_3361717_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3361734_3362064_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3362073_3362592_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3362846_3363347_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3363354_3363777_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3363773_3364172_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3364168_3364564_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3364563_3364752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3364765_3365248_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3365310_3365562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3366236_3367187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3367615_3368218_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3368340_3368583_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3368588_3369644_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3369672_3371091_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3371093_3372371_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3372357_3372843_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3373482_3374433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3374689_3375379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3375371_3375623_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3376177_3376789_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3376860_3377067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3377318_3378269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3378367_3379441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3379608_3380403_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3380442_3380967_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3380959_3382702_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3382911_3383670_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3383672_3384380_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3384396_3385278_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3385288_3386047_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3386015_3386771_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3386840_3388259_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3388280_3388931_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3389064_3389400_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3389488_3390439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390515_3392336_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392340_3393414_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393536_3394505_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394578_3395490_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395508_3396081_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396161_3396710_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396709_3398299_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398368_3398608_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3398648_3399674_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399739_3400921_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3401017_3401470_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401479_3402820_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3403136_3404174_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404555_3404915_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404998_3405940_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3406014_3406965_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407258_3408353_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3408443_3409316_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409337_3410177_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410252_3411770_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
>prophage 28
NZ_CP011723	Bordetella pertussis strain I136 chromosome, complete genome	4107454	4006522	4071434	4107454	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4006522_4007008_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007096_4007234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007226_4008207_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008473_4009283_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009322_4010003_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009996_4010455_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010466_4010829_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010911_4011595_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011650_4011959_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011977_4012292_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012288_4014763_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014770_4016162_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016158_4016344_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016322_4017024_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4017020_4017842_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017822_4018947_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018939_4019959_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020164_4021055_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021299_4022091_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022173_4022548_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022525_4023935_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023927_4025310_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025644_4027249_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027326_4028298_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028308_4029235_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029625_4030576_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030745_4031972_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032171_4033038_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033030_4033993_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034093_4035044_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035142_4036093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036191_4037142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037138_4038632_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038628_4041736_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041732_4044801_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044797_4046048_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046228_4046981_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047022_4047667_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047675_4048656_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048755_4049499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049581_4049929_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050026_4050869_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050913_4051801_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051827_4052016_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052113_4053571_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053557_4055084_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055102_4055570_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055569_4056592_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056712_4057453_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057507_4058608_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058609_4059800_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059919_4060936_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061254_4061926_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061922_4062831_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063042_4063690_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067550_4068618_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068628_4069438_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069527_4070301_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853639.1|4070483_4071434_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
