The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	27282	70036	4103220	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162494351.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	77634	136108	4103220	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	164891	287970	4103220	protease,transposase,tRNA	Klosneuvirus(11.76%)	104	NA	NA
WP_005015810.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815889.1|168164_168794_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169076_170507_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170540_171170_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171218_172826_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172850_173534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173615_174092_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174298_175249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176364_176892_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176983_177799_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177859_178594_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181333_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184323_187998_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188058_188622_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188629_189052_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189079_189499_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189527_189974_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190100_190598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190752_193023_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193098_194304_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194402_195353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195455_196091_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196087_196981_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197375_198476_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198557_198932_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198991_201856_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202000_202741_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202810_204022_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204050_205019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205632_206583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206739_207063_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207167_208208_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208213_208993_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209038_209335_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209360_209636_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209692_210337_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210336_211023_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211221_212004_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212054_212780_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212811_214161_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214272_215205_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215662_218458_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219051_221895_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222065_222785_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222823_223372_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223526_224426_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224450_225401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|225499_226450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226668_227364_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227380_228793_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228905_230336_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230377_232291_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232609_233176_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233266_234268_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234382_235333_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235419_236370_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236366_237317_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237415_238213_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239162_239573_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240594_241338_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241381_242425_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242595_244698_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246108_247065_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247083_247575_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247571_248927_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248927_249626_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249622_250324_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250576_251626_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251731_252673_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252669_254559_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254645_255284_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255426_256812_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256742_257279_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257430_258822_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258838_259819_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259954_260938_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261002_261902_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262008_263763_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263770_264895_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264908_265889_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266619_267570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268129_268675_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268800_270378_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270393_271548_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271561_271687_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271683_273435_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273431_275111_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275173_275722_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276864_277143_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278186_279137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279123_279339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279414_279576_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280242_280692_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280701_281313_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281471_282320_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282345_283728_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283792_284434_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284573_285032_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285056_285833_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285886_287023_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287019_287970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	556355	615655	4103220	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|556355_557306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558629_559406_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559440_561213_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561214_562117_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562241_562601_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562632_563595_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563693_564644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564656_565592_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565651_566491_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566487_567657_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567653_568943_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568985_569360_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569474_570203_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570210_570915_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571178_572699_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572754_573318_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573336_574368_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574364_575153_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575328_576318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578074_579025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580247_581150_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581151_582006_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582052_583162_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583172_583691_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583720_584353_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584424_585084_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585080_586220_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586569_587442_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587597_588335_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588337_589969_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590064_591054_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591050_591761_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591856_592873_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593144_593771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593826_594954_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594959_600677_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601244_602189_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602377_603313_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603430_605002_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605081_606290_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606787_607705_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610065_610287_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610617_611634_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611718_611970_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611973_612789_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612901_613780_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613891_615655_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 6
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	621810	675547	4103220	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621810_622761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622856_623828_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623832_624513_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624650_625043_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625150_626167_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626402_627188_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627282_628692_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628702_629503_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629523_630294_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630336_630804_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630800_631751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633699_634578_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635504_638483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638836_639787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639783_640872_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640907_641771_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642910_643300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643303_644086_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644119_644905_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645180_646320_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646316_647108_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647104_647854_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647850_648723_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648722_649724_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649720_650884_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650909_651593_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651546_652881_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652873_653968_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654734_655685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657625_658885_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658881_660420_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660416_661613_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661609_662986_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|662997_664014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664082_665318_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665418_666213_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666582_666990_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667407_667680_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667849_668074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668261_669116_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669216_669519_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669563_670181_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670197_670506_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670502_672218_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672220_672838_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672938_673523_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673547_674192_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674596_675547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	724485	765484	4103220	protease,transposase,tRNA,integrase	Pseudomonas_phage(33.33%)	30	721733:721751	741621:741639
721733:721751	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724485_725082_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725078_725861_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725933_727025_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727304_728432_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728773_729820_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730330_733087_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733088_736040_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736055_737267_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737263_737464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737450_738401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738417_738912_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738915_739173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739716_740628_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740709_740994_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741777_742728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741621:741639	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743146_745711_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745755_747609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747941_749513_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|750954_751905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751990_752731_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752957_753905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755292_756243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|756436_757252_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757384_758824_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758837_759179_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759233_760889_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761040_762051_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762183_762957_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763484_764435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|764533_765484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	775411	821980	4103220	protease,transposase,holin,tRNA	Bovine_alphaherpesvirus(10.0%)	45	NA	NA
WP_005012808.1|775411_776362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|776500_777253_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|777527_779216_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|779235_780495_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|780509_781604_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|781600_783664_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|783739_784420_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|784697_786071_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|786072_787092_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|787155_788127_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|788191_789142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|789240_790083_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|790082_790418_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|790488_791907_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|792186_793227_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|793306_793558_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|793668_794832_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|795115_795970_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|795966_796857_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|796899_797811_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|797837_798530_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|798544_799525_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|799537_801679_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|801727_802696_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|802686_803355_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|803315_804251_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|804247_805144_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|805140_805863_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|805853_806018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|806191_806695_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|806971_808087_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|808229_808694_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|808841_809381_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|809402_810737_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|810750_811056_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|811480_812062_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|812143_813094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813534_814440_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814495_816103_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816356_817862_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817876_818341_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818630_819581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819743_820274_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820273_820585_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821029_821980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	997834	1100227	4103220	transposase,tRNA	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|997834_998950_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999050_999869_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999966_1000578_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000737_1002114_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002176_1002635_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002719_1003415_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003476_1003758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004320_1005073_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005117_1006194_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006190_1007141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007243_1007906_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008000_1008171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008523_1009525_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009527_1010724_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010744_1011548_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011628_1011925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011955_1012519_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012559_1013417_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013424_1014174_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014195_1015068_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015096_1015876_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015909_1016707_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019361_1019754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019747_1020608_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020611_1021574_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022350_1023040_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023900_1024851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025200_1026070_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026140_1026836_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026825_1027335_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027331_1028552_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028499_1029402_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030288_1031575_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031613_1032987_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033025_1033727_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034025_1035015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035115_1035577_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035592_1036141_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036282_1037758_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037863_1038955_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038958_1039741_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039750_1040539_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041664_1042099_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042095_1043106_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043149_1044076_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044362_1044731_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044947_1045898_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045942_1048369_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048417_1049110_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049182_1050382_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050399_1051305_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051420_1052350_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052375_1053722_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053734_1054499_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054512_1055295_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055487_1056438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056499_1057609_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058121_1058958_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059084_1059993_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1059989_1060940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061325_1061868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062903_1063854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064095_1064464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064509_1065634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066768_1067509_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067612_1068233_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068336_1069287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069283_1071392_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071536_1072196_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072227_1072692_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072967_1073153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073204_1073957_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073963_1075226_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075267_1076506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077583_1078711_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078721_1079549_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079535_1080402_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081768_1082173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082264_1083215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083584_1084496_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084510_1085221_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085217_1086462_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086463_1086898_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086926_1087232_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087330_1088281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088337_1089486_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089566_1090517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091048_1091846_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091893_1092547_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092503_1093592_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093756_1095982_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098259_1099156_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099276_1100227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	1130613	1201584	4103220	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130613_1131564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131620_1132733_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135116_1136067_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136657_1137434_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137551_1137815_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137915_1138920_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139120_1140722_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140747_1141506_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141597_1142254_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142344_1143109_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143118_1143307_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143362_1144406_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144402_1144816_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144812_1145433_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145713_1146664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146831_1148223_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148295_1148874_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1148990_1150388_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150503_1151709_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151808_1152327_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152421_1152667_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152894_1153209_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153307_1158488_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158484_1160653_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160708_1163024_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163028_1164348_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164366_1166040_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166044_1166713_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166869_1170691_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171021_1171972_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1171993_1173139_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173287_1174217_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174213_1175302_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175298_1176102_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176098_1176830_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176887_1178177_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178273_1178876_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183429_1183768_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184475_1184742_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186448_1187399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187395_1188727_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1189987_1191988_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191980_1192622_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192618_1193026_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193022_1193823_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193897_1194602_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194633_1195428_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195424_1196375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196473_1197424_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197522_1197957_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198039_1200376_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010929632.1|1200567_1201584_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	1248978	1329853	4103220	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1248978_1249929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249925_1250876_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251136_1252165_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252244_1253543_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253539_1254121_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254433_1258480_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258720_1266382_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266378_1267329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268468_1268942_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269081_1269702_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269837_1270638_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270692_1271784_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271805_1272249_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272277_1272910_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273020_1273437_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273429_1274122_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274228_1274603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274679_1275489_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275584_1276529_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276567_1277539_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277629_1278067_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278125_1279007_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280010_1280871_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280903_1282286_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282282_1283302_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283674_1284169_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284176_1284917_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1284997_1286602_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286641_1287430_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287555_1289721_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290601_1291414_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291426_1291735_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291852_1293583_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293584_1294787_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1294859_1295528_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295649_1296117_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296252_1297635_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297631_1298756_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298752_1301389_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301804_1302755_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306501_1307113_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307335_1308796_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308892_1310485_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310838_1311096_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311097_1312438_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312533_1313223_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313235_1314666_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316390_1317212_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317222_1318794_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318822_1319800_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319826_1320630_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320626_1321421_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321428_1322664_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322677_1323091_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323840_1324791_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325412_1327140_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327251_1328610_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328902_1329853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	1449248	1513464	4103220	protease,transposase,tRNA	Salmonella_phage(16.67%)	59	NA	NA
WP_005013747.1|1449248_1450199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450365_1450719_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450731_1451094_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451135_1451561_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451763_1453020_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453218_1454199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454348_1455590_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455688_1456639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456647_1457343_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460164_1460764_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460774_1462940_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462963_1464748_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464747_1464837_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465531_1465804_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465803_1467870_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467866_1468817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468915_1469866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469981_1470314_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470310_1470997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470983_1471943_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1471975_1474345_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474344_1474977_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475078_1476419_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476465_1477821_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478111_1478348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478535_1478853_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479125_1479641_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479911_1480667_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481005_1481212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481219_1481879_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482173_1484378_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484488_1485712_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485834_1486809_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486876_1488070_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488084_1488885_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488881_1490738_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490734_1491340_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491358_1492744_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493469_1494696_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494784_1495567_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495665_1496616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496642_1497416_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497427_1498669_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930938.1|1500485_1501313_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_010930937.1|1501314_1502025_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_003821345.1|1502021_1502621_-	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930936.1|1502729_1503323_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003813827.1|1503374_1503557_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_003821347.1|1503613_1504672_+	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_010930935.1|1504671_1505658_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_010930934.1|1505739_1506675_+	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_003813819.1|1506676_1507429_+	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_003813816.1|1507611_1507851_+	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813802.1|1508040_1509270_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_010930933.1|1509271_1509772_+	membrane protein	NA	NA	NA	NA	NA
WP_003813797.1|1509768_1510368_+	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_023853242.1|1510380_1510881_+	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_010930931.1|1510880_1511939_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_004566381.1|1511976_1513464_+|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
>prophage 13
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	1743198	1800477	4103220	transposase,tRNA	Klosneuvirus(14.29%)	49	NA	NA
WP_010930522.1|1743198_1744149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1744247_1746848_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1746954_1747959_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1748067_1749408_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1749448_1750477_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1750672_1751218_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1751214_1751775_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1751873_1752824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1752861_1753449_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1753466_1753850_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1755209_1756502_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1756636_1757677_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1757774_1758791_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1759058_1759694_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1759831_1760590_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1760574_1761354_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1761371_1762256_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1762252_1763032_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1763058_1763736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1764024_1764777_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1764895_1766296_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1766319_1766718_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1766893_1767094_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1767232_1767961_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1768094_1769510_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1769513_1770377_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1770389_1771139_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1771381_1773337_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1773318_1773987_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1774761_1775712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1775860_1776199_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1776256_1776418_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1776449_1776650_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1776915_1779489_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1779559_1782109_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1784659_1785148_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1785239_1786391_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1786444_1787266_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1787304_1788534_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1788662_1789103_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1789213_1790164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930538.1|1790160_1790634_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446178.1|1790795_1791734_+	membrane protein	NA	NA	NA	NA	NA
WP_010930540.1|1791735_1792944_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_010930541.1|1793048_1793555_-	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930542.1|1793557_1796419_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1796408_1797374_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1797433_1799428_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1799526_1800477_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	1851726	1910996	4103220	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1851726_1852677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1852801_1853611_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1853811_1854762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1856035_1857253_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1858309_1859212_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1859288_1860161_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1860291_1860660_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1860717_1861764_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1861959_1863216_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1863220_1864558_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1864707_1865664_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1865766_1866699_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1866814_1867135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1867127_1867487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1867534_1869109_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1869161_1870106_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1870123_1870954_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1870946_1872581_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1872577_1873933_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1874839_1876417_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1876420_1877695_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1877792_1878167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1879882_1881016_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_023998862.1|1881053_1881659_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1881655_1882474_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1882545_1885170_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1885156_1885411_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1885477_1886059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1886362_1886623_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1886788_1887412_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1887411_1888185_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1888181_1889390_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1889415_1889889_-	RidA family protein	NA	NA	NA	NA	NA
WP_077069090.1|1889962_1890913_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1891011_1891962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1892060_1893410_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1894175_1894931_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1895023_1897906_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1898228_1898654_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1898681_1899830_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1899826_1900333_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1900348_1901635_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1901684_1902980_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1902981_1903620_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1903625_1904783_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1904809_1906165_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1906168_1907239_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1907377_1907614_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1907701_1908808_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1908773_1910078_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1910096_1910996_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 15
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	1921236	1978733	4103220	transposase	Staphylococcus_phage(16.67%)	56	NA	NA
WP_005013747.1|1921236_1922187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1922285_1923236_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1923435_1924521_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1924536_1925298_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1925294_1926218_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1926316_1926841_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1926849_1927593_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1927688_1927928_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1927941_1928094_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1928179_1929670_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1929761_1930700_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1930696_1930873_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1930875_1931538_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1933159_1933303_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1933299_1934274_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1934440_1935391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1935387_1936662_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1936765_1937959_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1937955_1938609_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1938605_1940042_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1940029_1940389_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162493101.1|1941203_1941344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930768.1|1942308_1944174_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1944431_1945952_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1946039_1946690_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1947638_1948934_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1948955_1949840_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1949938_1950814_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1950803_1951160_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1951290_1952265_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1952394_1952574_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1952671_1953196_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1953206_1954043_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1954155_1954527_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1954523_1955075_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1955090_1956782_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1956830_1957511_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1957758_1958223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1958392_1959322_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1959334_1959982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1960055_1961873_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1961956_1962907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1963559_1964510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|1964528_1964876_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|1964904_1966344_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|1966362_1966758_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|1966932_1967541_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|1967553_1968372_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|1968323_1969298_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|1969326_1970388_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|1970384_1972601_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|1972614_1973073_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|1973230_1973575_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|1973731_1974637_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|1974723_1975737_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|1977716_1978733_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	1994283	2058652	4103220	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1994283_1995234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1995455_1996406_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1996504_1997470_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1997607_1998507_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2001101_2002589_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2002599_2003796_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2003868_2005188_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2005184_2006060_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2006090_2007239_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2007256_2007571_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2007592_2008315_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2008314_2009133_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2009137_2009665_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2009670_2010927_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2011285_2012425_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2012502_2013375_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2014245_2015196_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2015155_2015791_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2016150_2017473_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2017791_2018613_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2020037_2020610_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2020649_2022479_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2022441_2023500_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2023537_2023999_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2024083_2024830_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2026320_2029551_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2029617_2030949_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2031201_2031576_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2031678_2032857_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2032867_2033458_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2033568_2034375_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2034400_2035195_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2036195_2037170_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2037328_2037841_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2037997_2038969_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2040713_2041520_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2041516_2042818_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2042768_2043533_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2043646_2044417_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2044501_2045689_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2045761_2046136_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2046236_2047499_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2047495_2048353_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2048525_2049527_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2049978_2050929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2052492_2053644_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2054012_2054249_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2054312_2054480_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2054593_2056489_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2056652_2057603_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2057701_2058652_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	2245120	2306468	4103220	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2245120_2246071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2246187_2246907_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2247079_2248066_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2248066_2248549_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2248552_2249836_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2249832_2250771_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2250767_2252477_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2252486_2253734_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2255344_2256634_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2257771_2258545_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2259206_2259950_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2260024_2260765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2260960_2261797_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2261847_2262618_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2262667_2263720_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2263716_2264343_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2264339_2265374_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2265552_2266569_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2266667_2267618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2270358_2271648_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2271766_2272204_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2272247_2273456_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2273602_2274067_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2274090_2275041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2276025_2276799_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2276795_2277794_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2277878_2278655_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2278810_2280415_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2280795_2281920_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2282046_2282670_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2282666_2284568_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2284616_2285411_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2285423_2286425_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2286421_2286871_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2286920_2287769_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2287866_2288409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2288452_2289403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2289558_2289885_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2289881_2290163_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2290162_2290642_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2290638_2292267_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2292263_2292608_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2292607_2295541_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2296699_2297650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2297748_2298045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2298151_2299069_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2299073_2299787_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2299800_2300772_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2302521_2302872_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2302875_2304063_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2304501_2305224_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2305517_2306468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	2327259	2398413	4103220	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2327259_2328210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2328762_2330388_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2330437_2331472_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2331474_2332821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2332817_2334332_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2334322_2335333_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2335806_2336748_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2336756_2337725_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2339264_2340233_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2340410_2341400_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2341446_2342205_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2342394_2343132_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2343230_2344181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2344365_2345148_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2345141_2345843_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2346082_2346685_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2348011_2348962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2348958_2350515_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2350507_2351281_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931070.1|2351339_2352290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2352371_2353547_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2353560_2355618_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2355614_2356640_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2356651_2357941_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2357963_2359061_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2359057_2359948_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2359944_2362029_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2362060_2363230_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2363271_2364012_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2364011_2364782_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2365637_2366423_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2366449_2368534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2368701_2370657_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2370980_2371481_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2371579_2373106_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2373243_2374131_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2374145_2375099_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2375150_2377241_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2377256_2377643_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2380336_2381140_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2382433_2383336_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2383400_2384177_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2384498_2385548_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2385671_2387342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2387346_2388141_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2388239_2389190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2389209_2390115_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2390192_2390891_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2391050_2391995_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2392004_2393492_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2393491_2394559_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2394622_2396035_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2396220_2397441_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2397462_2398413_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	2494241	2558417	4103220	transposase,tRNA	Planktothrix_phage(28.57%)	56	NA	NA
WP_003812608.1|2494241_2496191_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2496578_2497355_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2497360_2497753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2498174_2499125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2499121_2500219_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2500250_2501201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2502982_2504224_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2504235_2505009_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2505035_2505986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2506465_2507122_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2507136_2508804_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2508806_2509436_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2509647_2510742_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2510886_2511699_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2511702_2513286_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2513456_2514587_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2514773_2515850_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2515931_2516582_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2516596_2518000_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2518283_2519102_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2519098_2519803_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2520702_2521818_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2521851_2522226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2522248_2523406_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2523418_2523652_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2524286_2527256_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2527270_2527480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2527631_2528261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2528257_2530315_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2530371_2531052_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2531048_2531609_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2531615_2532713_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2532865_2533459_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2533455_2534748_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2534761_2535304_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2535313_2536150_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2536183_2537245_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2537286_2538339_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2538354_2538657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2538798_2539749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2539927_2541622_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2541618_2542704_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2542751_2543651_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2543661_2544306_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545327_2548570_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2548580_2549735_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2549961_2550924_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023998563.1|2551022_2551973_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2551982_2552672_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2552731_2553169_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2553214_2554108_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2554155_2555328_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2555324_2556479_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2556675_2557026_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2557015_2557450_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2557466_2558417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	2604510	2667952	4103220	transposase	uncultured_Caudovirales_phage(40.0%)	53	NA	NA
WP_005012067.1|2604510_2605461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2605559_2606510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606879_2607452_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607454_2608465_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608457_2608958_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2608968_2609310_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2609378_2610113_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610129_2610399_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610421_2611210_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611256_2612273_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612489_2613932_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614110_2615730_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615850_2617671_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617749_2619282_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2619315_2620962_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2621031_2622054_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2622071_2623205_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623207_2623897_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623896_2624682_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624725_2625490_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625528_2626950_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2627015_2627720_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627767_2628187_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628199_2628607_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628790_2629501_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629627_2629918_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629935_2630418_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634923_2636078_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_023853536.1|2636383_2637400_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637646_2638435_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638501_2639182_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639178_2639949_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2640047_2640998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2641053_2641971_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2641981_2643160_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643179_2644175_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645763_2646372_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646359_2647400_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647417_2648380_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648376_2649570_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2649566_2650364_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650389_2651376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651394_2653434_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2653635_2654316_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654329_2655241_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655237_2655816_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655954_2656860_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656867_2660287_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660274_2662875_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663830_2664463_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664856_2665615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2665611_2666814_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2667001_2667952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	2834624	2900209	4103220	transposase,tRNA	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2834624_2835575_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2835673_2836624_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2836826_2837816_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2837899_2838253_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2838330_2838939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2840612_2841191_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2841215_2842169_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2842208_2843126_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2843247_2844174_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2844181_2844928_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2845254_2846196_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2846422_2848120_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2848554_2849976_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2850129_2850909_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2851033_2851912_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2852017_2853142_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2853187_2854150_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2854142_2854997_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2855104_2855515_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2855511_2856462_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2856560_2857442_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2857519_2858899_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2858937_2859783_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2859798_2860113_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2860145_2860682_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2860854_2861430_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2861532_2862270_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2862337_2863975_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2864082_2864838_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2864825_2865788_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2865895_2866690_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2866751_2868827_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2868991_2871367_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2871447_2872803_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874281_2875004_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875058_2876042_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876171_2877122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877118_2878021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878108_2878867_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878879_2879971_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880068_2881496_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881725_2882940_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2882985_2885856_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888266_2888755_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888880_2891577_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891731_2894014_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2894179_2894812_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2894910_2895861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895907_2896462_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896529_2897375_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897444_2898413_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898412_2900209_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	2917779	2978722	4103220	transposase,holin,tRNA	Catovirus(22.22%)	51	NA	NA
WP_010930190.1|2917779_2919300_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919342_2919645_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919641_2920274_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920352_2922218_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922214_2923009_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923037_2924153_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925057_2925936_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925935_2926760_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926927_2927878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928090_2930940_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930921_2931650_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931790_2933254_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933250_2933622_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933639_2934953_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2934989_2935448_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935560_2936511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936507_2937521_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937660_2938647_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939005_2939713_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2940293_2941244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941395_2941998_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942016_2942649_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942693_2942945_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942886_2944773_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944791_2945634_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945630_2946989_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947209_2948004_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948234_2949728_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2949963_2952045_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952239_2953280_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953414_2954431_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954452_2955310_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955354_2956131_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2956498_2957449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957475_2957940_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959146_2961435_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961551_2962424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962466_2963621_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963655_2964486_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964569_2966114_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966156_2966516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966517_2966931_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2966971_2967289_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967373_2968090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968353_2969775_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_077075906.1|2969841_2970807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998885.1|2970899_2973638_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2973970_2974987_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975322_2975964_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976054_2977491_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977648_2978722_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 23
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	2983608	3056125	4103220	transposase,tRNA	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2983608_2984625_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985562_2986990_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986986_2988009_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2987998_2988472_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988612_2989500_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989496_2991140_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991136_2992144_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992974_2993991_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994090_2994723_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994731_2995121_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995173_2996226_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997089_2998796_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998869_2999370_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999384_3001442_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001468_3001762_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001863_3002811_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002823_3003699_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003819_3004380_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004414_3004738_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005173_3005911_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006209_3007160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007403_3007667_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3007740_3008022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3008038_3008899_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3008895_3009231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009284_3009935_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3011615_3012560_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3012605_3012923_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3012925_3013864_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3014041_3014527_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014545_3015094_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3015125_3015278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3016607_3017249_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017403_3019752_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3019748_3020687_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3020712_3021903_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3021899_3022673_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3022702_3023896_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3024013_3025024_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3025041_3027078_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027272_3028013_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3028111_3029062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029104_3030280_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030501_3032292_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032304_3033966_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033978_3036684_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036976_3038731_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038727_3039354_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039350_3040202_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040331_3042392_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042578_3043193_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043338_3043590_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043659_3045042_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045038_3048218_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049025_3049943_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3049994_3050726_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050785_3051358_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052866_3053883_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054020_3055070_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055174_3056125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	3075525	3140465	4103220	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3075525_3076476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076574_3077159_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077193_3078183_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078179_3079121_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079117_3080338_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080380_3080695_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080886_3081246_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081247_3082963_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083150_3083822_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083836_3085165_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085161_3086061_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086147_3087233_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087225_3088356_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088358_3091040_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091410_3091992_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092117_3092843_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092839_3093517_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093732_3094914_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095686_3095869_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095898_3096849_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096978_3097371_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097647_3098559_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098683_3099658_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099654_3100605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3100703_3101789_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3101886_3102297_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3102912_3104826_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3104961_3107574_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3107575_3108310_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108473_3109655_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3109651_3109864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3109860_3110841_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3110886_3111714_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3111863_3113678_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3113732_3114116_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3114112_3115063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115175_3115427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3115620_3115836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115932_3117051_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117170_3117383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117542_3117764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117816_3118767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119943_3121314_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121346_3122138_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122150_3123206_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123231_3124107_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124212_3124461_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124495_3125950_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125946_3126468_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126496_3127849_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128072_3130961_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133105_3134407_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3134421_3135138_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135419_3136100_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3136627_3137287_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137685_3139518_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139514_3140465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	3232088	3301091	4103220	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232088_3233039_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233035_3234055_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234064_3236773_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236920_3237577_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237675_3238626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238773_3239667_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239866_3241561_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241595_3242522_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242590_3243688_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243706_3244570_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244581_3245364_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245360_3246479_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246475_3248008_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248048_3249056_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249200_3249923_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249938_3250961_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251277_3252012_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252096_3253842_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253838_3254591_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254635_3255592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255680_3256247_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256254_3257115_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257144_3257873_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_023998704.1|3257904_3258588_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259425_3260340_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260404_3261313_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261403_3262828_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262829_3264152_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264148_3266287_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266364_3271485_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271585_3271894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271963_3272521_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272536_3274018_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_077075908.1|3274072_3275926_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276188_3277526_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277560_3279558_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279575_3281624_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281754_3282621_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282889_3283855_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283969_3285118_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285542_3285854_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285887_3286148_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286297_3287431_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287501_3288638_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288803_3289598_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289660_3290104_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290219_3291170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291292_3291700_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291772_3293968_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294189_3295140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295099_3295624_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295755_3296727_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296846_3299291_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299306_3299897_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300140_3301091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011721	Bordetella pertussis strain I127 chromosome, complete genome	4103220	3316537	3416650	4103220	transposase,tail,terminase,protease,tRNA	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3316537_3317488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318219_3318597_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318581_3319283_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319426_3320119_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320118_3321222_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321331_3323704_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323700_3325260_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325284_3326082_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326113_3327259_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327363_3328806_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328808_3330038_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332175_3333126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334255_3334813_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334788_3335139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335307_3336102_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336098_3337148_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337147_3337837_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337923_3338421_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338452_3339769_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339785_3340760_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340796_3341255_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341254_3341935_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341937_3342366_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342418_3344149_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344214_3344787_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344767_3345454_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345809_3346481_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346809_3347031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347030_3347312_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347308_3347824_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347823_3348375_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348353_3348596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348600_3349413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349412_3349676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349716_3349914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349894_3350311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350315_3354272_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354264_3354654_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354650_3355184_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355251_3355611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355620_3358233_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358258_3358549_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358566_3358896_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358905_3359424_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359678_3360179_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360186_3360609_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360605_3361004_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361000_3361396_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361395_3361584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361597_3362080_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362142_3362394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363068_3364019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364447_3365050_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365172_3365415_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365420_3366476_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366504_3367923_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367925_3369203_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369189_3369675_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370314_3371265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3371521_3372211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372203_3372455_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3373009_3373621_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373692_3373899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374150_3375101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375199_3376273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376440_3377235_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377274_3377799_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377791_3379534_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379743_3380502_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380504_3381212_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381228_3382110_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382120_3382879_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382847_3383603_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383672_3385091_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385112_3385763_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385896_3386232_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386320_3387271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387347_3389168_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389172_3390246_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390368_3391337_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391410_3392322_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392340_3392913_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3392993_3393542_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393541_3395131_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395200_3395440_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395480_3396506_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396571_3397753_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397849_3398302_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398311_3399652_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399968_3401006_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401387_3401747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401830_3402772_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402846_3403797_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404090_3405185_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405275_3406148_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406169_3407009_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407084_3408602_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408698_3409799_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409815_3410238_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410260_3410473_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410519_3411440_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411622_3412372_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412374_3412704_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3412991_3414344_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414355_3414739_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414800_3415601_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415699_3416650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
