The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	27282	70036	4110588	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	77634	136108	4110588	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_077069213.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	164893	225403	4110588	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	50	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	233335	286923	4110588	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	390856	448365	4110588	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	591468	652658	4110588	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591468_592419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592894_593785_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593781_594603_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594801_595293_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595311_596385_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596431_597535_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597610_598231_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598251_598761_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598815_599067_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599130_600264_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600271_600658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600654_603174_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603602_603941_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603937_604444_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604505_605306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605416_606358_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606451_607987_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609666_611517_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611520_612354_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612353_613295_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613546_614518_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614659_616948_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617254_618163_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618217_619183_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619257_620919_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620990_621701_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621849_622800_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623498_623882_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623939_624542_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624559_624961_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625076_625988_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625984_626566_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627360_628095_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628135_629185_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629332_629911_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630297_631275_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631368_635763_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635963_636812_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636970_637783_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637838_638789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638887_639688_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639749_640133_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640144_641497_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641784_642114_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642116_642866_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643048_643969_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644015_644228_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644250_644673_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644689_645790_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645886_647404_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647479_648319_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648340_649213_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649303_650398_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650691_651642_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651716_652658_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	657982	765318	4110588	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_023995141.1|657982_659008_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659048_659288_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659357_660947_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660946_661495_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661575_662148_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662166_663078_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663151_664120_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664242_665316_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665320_667141_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667217_668168_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668256_668592_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668725_669376_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669397_670816_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670885_671641_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671609_672368_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672378_673260_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673276_673984_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673986_674745_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674954_676697_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676689_677214_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677253_678048_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678215_679289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679387_680338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680589_680796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680867_681479_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682033_682285_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682277_682967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683223_684174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684813_685299_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685285_686563_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686565_687984_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688012_689068_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689073_689316_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689438_690041_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690469_691420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692094_692346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692408_692891_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692904_693093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693092_693488_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693484_693883_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693879_694302_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694309_694810_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695064_695583_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695592_695922_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695939_696230_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696255_698868_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698877_699237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699304_699838_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699834_700224_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700216_704173_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931428.1|704177_704594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|704574_704772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|704812_705076_+	hypothetical protein	NA	A0A1B0V3F2	Roseobacter_phage	41.8	7.2e-09
WP_010931426.1|705075_705888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931425.1|705892_706135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931424.1|706113_706665_+	lysozyme	NA	NA	NA	NA	NA
WP_005012067.1|707073_708024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926433.1|708225_708507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931422.1|708506_708728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931421.1|709056_709728_-	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931420.1|710083_710770_-	response regulator	NA	NA	NA	NA	NA
WP_003814635.1|710750_711323_-	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003814636.1|711388_713119_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|713171_713600_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|713602_714283_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|714282_714741_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|714777_715752_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|715768_717085_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|717116_717614_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|717700_718390_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|718389_719439_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|719435_720230_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|720398_720749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|720724_721282_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|722411_723362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|725499_726729_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|726731_728174_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|728278_729424_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|729455_730253_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|730277_731837_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|731833_734206_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|734315_735419_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|735418_736111_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|736254_736956_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|736940_737318_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|738049_739000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|739159_740032_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|740372_740591_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|740630_742010_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|742051_743449_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|743488_745141_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|745144_746029_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|746028_746970_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|747048_748668_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|748834_749650_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|749717_750287_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|750287_751238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|751892_752990_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|753023_754289_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|754446_755397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|755640_756231_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|756246_758691_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|758810_759782_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|759913_760438_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|760397_761348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|761569_763765_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|763837_764245_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|764367_765318_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	887907	1028475	4110588	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|887907_888924_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|889120_890104_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|891702_893091_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|893121_894111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|894221_895454_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|895735_896536_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|896558_898790_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|899577_900024_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|900045_900792_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900935_901913_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|902546_903158_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|903151_904369_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|904509_905460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|905456_906176_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|906296_908456_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|908546_908816_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|908904_909111_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|909109_909637_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|909655_910435_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|910602_911619_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|911691_912183_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|912193_913909_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_010929591.1|915072_916023_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916019_917852_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918250_918910_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|919437_920118_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920399_921116_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921130_922432_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|924576_927465_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927688_929041_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929069_929591_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929587_931042_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931076_931325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931430_932306_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932331_933387_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933399_934191_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934223_935594_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|936770_937721_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937773_937995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938154_938367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938486_939605_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|939701_939917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|940110_940362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077082435.1|940474_941425_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941421_941805_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941859_943674_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943823_944651_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944696_945677_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945673_945886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945882_947064_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947227_947962_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947963_950576_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950711_952625_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953240_953651_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953748_954834_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954932_955883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955879_956854_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|956978_957890_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958166_958559_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|958688_959639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|959668_959851_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|960623_961805_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|962020_962698_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|962694_963420_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|963545_964127_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|964497_967179_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|967181_968312_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|968304_969390_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|969476_970376_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|970372_971701_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|971715_972387_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|972574_974290_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|974291_974651_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|974842_975157_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|975199_976420_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|976416_977358_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|977354_978344_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|978378_978963_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|979061_980012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980092_981004_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981064_982210_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982229_983144_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983215_983965_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|983964_984894_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985137_986964_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987046_987688_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|987877_988912_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|990748_991813_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|992610_993519_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995006_996281_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|996434_996815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|996822_997695_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998000_998381_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|998591_999317_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|999412_1000363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1000461_1001412_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1001516_1002566_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1002703_1003720_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1005228_1005801_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1005860_1006592_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1006643_1007561_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1008368_1011548_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1011544_1012927_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1012996_1013248_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1013393_1014008_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1014194_1016255_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1016384_1017236_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1017232_1017859_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1017855_1019610_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1019902_1022608_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1022620_1024282_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1024294_1026085_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1026306_1027482_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1027524_1028475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1049426	1100088	4110588	holin,transposase,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1049426_1050377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1050675_1051413_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1051848_1052172_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1052206_1052767_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1052887_1053763_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1053775_1054723_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1054824_1055118_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1055144_1057202_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1057216_1057717_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1057790_1059497_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1060360_1061413_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1061465_1061855_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1061863_1062496_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1062595_1063612_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1064442_1065450_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1065446_1067090_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1067086_1067974_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1068114_1068588_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1068577_1069600_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1069596_1071024_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1071961_1072978_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1073310_1074246_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1074295_1076176_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1076242_1076587_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1076731_1077868_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1077864_1078938_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1079095_1080532_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1080622_1081264_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1081599_1082616_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1084658_1085609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1086811_1088233_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1088496_1089213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1089297_1089615_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1089655_1090069_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1090070_1090430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1090472_1092017_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1092100_1092931_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1092965_1094120_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1094162_1095035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1095151_1097440_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1098646_1099111_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1099137_1100088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1115342	1180414	4110588	transposase,tRNA	Catovirus(25.0%)	45	NA	NA
WP_010929591.1|1115342_1116293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1116873_1117581_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1117939_1118926_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1119065_1120079_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1120075_1121026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1121138_1121597_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1121633_1122947_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1122964_1123336_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1123332_1124796_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1124936_1125665_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1125646_1128496_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1128708_1129659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1129826_1130651_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1130650_1131529_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1132433_1133549_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1133577_1134372_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1134368_1136234_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1136312_1136945_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1136941_1137244_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1137286_1138807_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1138813_1139569_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1139598_1140703_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1140805_1142506_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1142487_1143465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1143474_1144755_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1144747_1145443_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1145476_1146304_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1146585_1149816_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1150551_1154478_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1156377_1158174_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1158173_1159142_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1159211_1160057_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1160124_1160679_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1160725_1161676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1161774_1162407_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1162571_1164854_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1165008_1167705_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1167830_1168319_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1170729_1173600_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1173645_1174860_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1175089_1176517_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1176614_1177706_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1177718_1178477_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1178564_1179467_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1179463_1180414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1321097	1386526	4110588	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1321097_1322048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1322816_1323455_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1324344_1324791_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1324872_1325574_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1325574_1326342_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1326338_1327577_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1327576_1328503_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1328605_1329721_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1329736_1330687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1331040_1331622_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1331618_1332452_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1332662_1333976_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1334152_1335034_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1335053_1335905_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1335957_1337046_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1337156_1338284_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1338518_1339130_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1339228_1340179_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1340400_1340778_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1340925_1341423_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1341419_1341947_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1342080_1342896_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1342908_1344090_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1344137_1345031_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1345157_1345628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1345753_1346581_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1346609_1347386_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1347382_1347658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1347672_1348137_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1348148_1348850_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1348959_1349460_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1349542_1350721_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1352348_1352684_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1352871_1354320_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1354377_1354722_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1354828_1355368_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1355460_1356411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1356509_1357460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1357558_1357966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1358198_1358630_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1358811_1359216_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1360452_1360776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1360778_1361666_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1361698_1362124_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1362195_1362549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1362788_1363295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1363333_1364665_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1364724_1365540_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1365536_1366391_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1369453_1371997_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1373363_1375118_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1375114_1377235_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1377239_1379435_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1379431_1382773_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1385575_1386526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1389682	1453124	4110588	transposase	uncultured_Caudovirales_phage(40.0%)	53	NA	NA
WP_010930208.1|1389682_1390633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1390820_1392023_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1392019_1392778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1393171_1393804_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1394759_1397360_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1397347_1400767_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1400774_1401680_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1401818_1402397_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1402393_1403305_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1403318_1403999_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1404200_1406240_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1406258_1407245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1407270_1408068_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1408064_1409258_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1409254_1410217_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1410234_1411275_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1411262_1411871_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1413459_1414455_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1414474_1415653_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1415663_1416581_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1416636_1417587_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1417685_1418456_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1418452_1419133_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1419199_1419988_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1420234_1421251_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1421556_1422711_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1427216_1427699_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1427716_1428007_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1428133_1428844_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1429027_1429435_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1429447_1429867_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1429914_1430619_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1430684_1432106_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1432144_1432909_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1432952_1433738_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1433737_1434427_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1434429_1435563_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1435580_1436603_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1436672_1438319_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1438352_1439885_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1439963_1441784_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1441904_1443524_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1443702_1445145_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1445361_1446378_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1446424_1447213_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1447235_1447505_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1447521_1448256_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1448324_1448666_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1448676_1449177_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1449169_1450180_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1450182_1450755_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1451124_1452075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1452173_1453124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1481295	1519885	4110588	protease,transposase	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
WP_010930352.1|1481295_1482630_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1482682_1485019_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1485144_1485708_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1485716_1486808_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1486879_1487335_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1487335_1488130_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1488126_1489308_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1489294_1489900_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1489896_1490670_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1490681_1491509_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1491670_1494034_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1494101_1494821_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1494944_1495370_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1495404_1496355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1496472_1497399_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1497464_1498622_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1498602_1499070_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1499217_1500168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1500184_1500619_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1500608_1500959_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1501155_1502310_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1502306_1503479_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1503526_1504420_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1504465_1504903_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1504962_1505652_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1505661_1506612_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1506710_1507661_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1507759_1508722_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1508948_1510103_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1510113_1513356_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1514377_1515022_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1515032_1515932_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1515979_1517065_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1517061_1518756_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1518934_1519885_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1602358	1670444	4110588	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1602358_1602847_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1602964_1603543_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1603648_1604017_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1604115_1605066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1605072_1606185_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1606871_1608074_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1608277_1610938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1610950_1614355_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1615022_1617248_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1617294_1617621_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1617671_1618280_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1618378_1619329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1619398_1620163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1620159_1620696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1620862_1621714_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1621773_1622400_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1622396_1623347_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1623445_1624558_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1624547_1625549_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1625654_1627166_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1627162_1628467_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1628578_1629139_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1629406_1629961_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1630416_1630632_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1630886_1633484_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1633480_1634668_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1635326_1635941_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1636029_1637151_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1637168_1638074_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1638966_1639917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1640098_1640851_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1640919_1641579_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1641575_1642304_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1642316_1644596_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1644620_1644824_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1644865_1645498_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1645633_1646551_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1646547_1647261_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1647498_1648269_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1648273_1648873_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1649117_1650608_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1650666_1650951_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1651516_1652443_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1652579_1653320_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1653486_1654863_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1655044_1655950_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1657601_1659404_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1659521_1660172_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1660270_1661221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1661242_1662463_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1662648_1664061_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1664124_1665192_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1665191_1666679_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1666688_1667633_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1667792_1668491_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1668568_1669474_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1669493_1670444_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1706393	1761984	4110588	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1706393_1707344_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1707402_1708176_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1708168_1709725_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1709721_1710672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1711998_1712601_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1712840_1713542_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1713535_1714318_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1714502_1715453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1715551_1716289_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1716478_1717237_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1717283_1718273_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1718450_1719419_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1720958_1721927_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1721935_1722877_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1723350_1724361_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1724351_1725866_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1725862_1727209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1727211_1728246_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1728295_1729921_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1730473_1731424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1731528_1732476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1732529_1734344_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1734336_1735011_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1735140_1738215_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1738228_1738528_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1738842_1739466_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1739709_1740579_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1740556_1741501_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1741586_1742513_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1742625_1743405_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1743395_1744592_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1744622_1745573_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1745794_1746484_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1746548_1747304_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1747355_1748348_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1748357_1749311_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1749426_1750389_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1751790_1752219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1752215_1753166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1753459_1754182_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1754620_1755808_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1755811_1756162_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1757911_1758883_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1758896_1759610_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1759614_1760532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1760638_1760935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1761033_1761984_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	1994749	2064401	4110588	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1994749_1997407_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1997484_1998687_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1998683_1999196_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1999318_1999756_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|2000032_2000983_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2001081_2002032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2002195_2004091_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2004204_2004372_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2004435_2004672_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2005040_2006192_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2007755_2008706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2009157_2010159_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2010331_2011189_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2011185_2012448_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2012548_2012923_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2012995_2014183_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2014267_2015038_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2015151_2015916_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2015866_2017168_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2017164_2017971_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2019715_2020687_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2020843_2021356_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2021514_2022489_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2023489_2024284_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2024309_2025116_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2025226_2025817_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2025827_2027006_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2027108_2027483_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2027735_2029067_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2029133_2032364_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2033854_2034601_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2034685_2035147_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2035184_2036243_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2036205_2038035_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2038074_2038647_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2040071_2040893_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2041211_2042534_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2042893_2043529_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2043488_2044439_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2045309_2046182_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2046259_2047399_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2047757_2049014_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2049019_2049547_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2049551_2050370_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2050369_2051092_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2051113_2051428_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2051445_2052594_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2052624_2053500_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2053496_2054816_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2054888_2056085_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2056095_2057583_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2060177_2061077_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2061214_2062180_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2062278_2063229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2063450_2064401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2075897	2125293	4110588	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2075897_2076848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2077985_2078282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2078456_2079809_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2079951_2080968_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2082947_2083961_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2084047_2084953_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2085109_2085454_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2085611_2086070_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2086083_2088300_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2088296_2089358_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2089386_2090361_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2090312_2091131_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2091143_2091752_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2091926_2092322_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2092340_2093780_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2093808_2094156_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2094174_2095125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2095777_2096728_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2096811_2098629_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2098702_2099350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2099362_2100292_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2100461_2100926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2101173_2101854_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2101902_2103594_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2103609_2104161_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2104157_2104529_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2104641_2105478_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2105488_2106013_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2106110_2106290_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2106419_2107394_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2107524_2107881_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2107870_2108746_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2108844_2109729_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2109750_2111046_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2111994_2112645_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2112732_2114253_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2114510_2116376_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2117421_2118372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2118389_2118530_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2119344_2119704_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2119691_2121128_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2121124_2121778_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2121774_2122968_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2123071_2124346_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2124342_2125293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2137542	2205918	4110588	protease,transposase,tRNA	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2137542_2138493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2138452_2138866_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2139150_2139450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2139859_2142142_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2142607_2142802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2142827_2144858_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2144877_2145090_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2145367_2145907_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2146020_2147316_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2147392_2148550_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2148733_2149633_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2149651_2150956_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2150921_2152028_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2152115_2152352_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2152490_2153561_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2153564_2154920_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2154946_2156104_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2156109_2156748_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2156749_2158045_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2158094_2159381_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2159396_2159903_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2159899_2161048_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2161075_2161501_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2161823_2164706_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2164798_2165554_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2166319_2167669_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2167767_2168718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2168816_2169767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2169840_2170314_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2170339_2171548_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2171544_2172318_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2172317_2172941_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2173106_2173367_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2173670_2174252_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2174318_2174573_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2174559_2177184_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2177255_2178074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2178070_2178676_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2178713_2179847_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2181562_2181937_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2182034_2183309_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2183312_2184890_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2185796_2187152_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2187148_2188783_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2188775_2189606_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2189623_2190568_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2190620_2192195_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2192242_2192602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2192594_2192915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2193030_2193963_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2194065_2195022_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2195171_2196509_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2196513_2197770_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2197965_2199012_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2199069_2199438_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2199568_2200441_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2200517_2201420_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2202476_2203694_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2204967_2205918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2259252	2316531	4110588	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2259252_2260203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2260301_2262296_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2262355_2263321_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2263310_2266172_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2266174_2266681_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2266785_2267994_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2267995_2268934_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2269095_2269569_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2269565_2270516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2270626_2271067_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2271195_2272425_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2272463_2273285_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2273338_2274490_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2274581_2275070_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2277620_2280170_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2280240_2282814_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2283079_2283280_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2283311_2283473_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2283530_2283869_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2284017_2284968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2285742_2286411_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2286392_2288348_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2288590_2289340_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2289352_2290216_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2290219_2291635_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2291768_2292497_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2292635_2292836_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2293011_2293410_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2293433_2294834_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2294952_2295705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2295993_2296671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2296697_2297477_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2297473_2298358_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2298375_2299155_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2299139_2299898_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2300035_2300671_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2300938_2301955_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2302052_2303093_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2303227_2304520_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2305879_2306263_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2306280_2306868_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2306905_2307856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2307954_2308515_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2308511_2309057_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2309252_2310281_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2310321_2311662_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2311770_2312775_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2312881_2315482_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2315580_2316531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2538321	2604042	4110588	protease,transposase,tRNA	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2538321_2540265_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540261_2541182_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541201_2541789_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541781_2542672_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542668_2543430_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543435_2544320_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544342_2546136_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546266_2547754_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547791_2548850_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548849_2549350_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549362_2549962_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549958_2550459_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550460_2551690_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551879_2552119_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552301_2553054_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553055_2553991_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554072_2555059_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555058_2556117_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556173_2556356_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556407_2557001_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557109_2557709_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557705_2558416_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558417_2559245_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561061_2562303_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562314_2563088_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563114_2564065_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564163_2564946_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565034_2566261_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566986_2568372_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568390_2568996_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2568992_2570849_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570845_2571646_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571660_2572854_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572921_2573896_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574018_2575242_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575352_2577557_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577851_2578511_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578518_2578725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579063_2579819_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580089_2580605_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580877_2581195_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581382_2581619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581909_2583265_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583311_2584652_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584753_2585386_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585385_2587755_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587787_2588747_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588733_2589420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589416_2589749_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589864_2590815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590913_2591864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591860_2593927_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593926_2594199_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594893_2594983_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594982_2596767_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596790_2598956_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598966_2599566_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602387_2603083_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603091_2604042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2691208	2731877	4110588	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2691208_2692159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2692269_2692452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2692551_2693148_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2693331_2694423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2694922_2695333_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2695391_2695721_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2695738_2698156_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2698168_2699191_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2699265_2699625_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2699640_2699838_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2700173_2701124_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2701318_2701768_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2701764_2702715_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2702825_2704274_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2704388_2704634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2704773_2705724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2705968_2706682_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2706804_2707032_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2707326_2707965_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2708073_2709108_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2709104_2710055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2710470_2710995_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2710998_2711268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2711466_2712528_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2712611_2714246_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2714247_2715051_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2715079_2716039_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2716042_2717557_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2717593_2718598_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2719029_2719500_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2719535_2720147_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2720177_2720801_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2720881_2722414_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2722448_2723666_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2723733_2724765_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2724761_2725931_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2725924_2726605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2726766_2727609_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2727771_2728743_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2728914_2729793_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2729815_2730886_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2730926_2731877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2735988	2812940	4110588	transposase,tRNA	Bacillus_virus(25.0%)	56	NA	NA
WP_005013747.1|2735988_2736939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2737688_2738102_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2738115_2739351_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2739358_2740153_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2740149_2740953_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2740979_2741957_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2741985_2743557_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2743567_2744389_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2746113_2747544_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2747556_2748246_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2748341_2749682_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2749683_2749941_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2750294_2751887_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2751983_2753444_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2753666_2754278_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2758024_2758975_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2759390_2762027_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2762023_2763148_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2763144_2764527_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2764662_2765130_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2765251_2765920_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_010931045.1|2765992_2767195_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2767196_2768927_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2769044_2769353_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2769365_2770178_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2771058_2773224_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2773349_2774138_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2774177_2775782_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2775862_2776603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2776610_2777105_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2777477_2778497_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2778493_2779876_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2779908_2780769_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2781772_2782654_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2782712_2783150_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2783240_2784212_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2784250_2785195_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2785290_2786100_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2786176_2786551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2786657_2787350_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2787342_2787759_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2787869_2788502_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2788530_2788974_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2788995_2790087_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2790141_2790942_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2791077_2791698_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2791837_2792311_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2793450_2794401_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2794397_2802059_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2802299_2806346_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2806658_2807240_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2807236_2808535_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2808614_2809643_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2809903_2810854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2810850_2811801_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2811989_2812940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2818222	2875380	4110588	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2818222_2819173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2820334_2820841_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2820837_2821602_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2821617_2821902_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2821966_2822956_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2823127_2824057_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2824028_2824715_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2824748_2825294_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2825338_2826604_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2826600_2827503_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2828684_2829629_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2829723_2831241_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2831282_2832911_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2833018_2833900_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2837012_2837387_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2837411_2837750_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2837793_2839428_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2839466_2840813_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2840920_2842342_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2842411_2842996_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2843098_2844049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2844183_2845290_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2845300_2846398_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2846542_2847748_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2847754_2848276_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2848272_2848755_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2848760_2849012_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2848992_2849478_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2849613_2853075_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2853092_2853977_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2853986_2854418_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2854664_2855168_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2855245_2856646_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2856720_2857596_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2857592_2858600_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2859067_2859373_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2859463_2860054_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2860244_2861261_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2861452_2863789_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2863871_2864306_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2864404_2865355_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2865453_2866404_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2866400_2867195_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2867226_2867931_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2868005_2868806_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2868802_2869210_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2869206_2869848_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2869840_2871841_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2873101_2874433_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2874429_2875380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2889856	2931215	4110588	protease,transposase	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
WP_010930800.1|2889856_2890807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2891137_2894959_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2895115_2895784_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2895788_2897462_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2897480_2898800_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2898804_2901120_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2901175_2903344_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2903340_2908521_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2908619_2908934_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2909161_2909407_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2909501_2910020_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2910119_2911325_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2911440_2912838_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2912954_2913533_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2913605_2914997_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2915164_2916115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2916395_2917016_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2917012_2917426_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2917422_2918466_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2918521_2918710_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2918719_2919484_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2919574_2920231_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2920322_2921081_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2921106_2922708_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2922908_2923913_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2924013_2924277_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2924394_2925171_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2925761_2926712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2929095_2930208_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2930264_2931215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	2961601	3015832	4110588	transposase	Planktothrix_phage(16.67%)	48	NA	NA
WP_005012067.1|2961601_2962552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2962672_2963569_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2965846_2968072_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2968236_2969325_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2969281_2969935_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2969982_2970780_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2971311_2972262_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2972342_2973491_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2973547_2974498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2974596_2974902_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2974930_2975365_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2975366_2976611_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2976607_2977318_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2977332_2978244_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2978606_2979011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2979007_2979466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2979472_2980381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2980377_2981244_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2981230_2982058_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2982068_2983196_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2984273_2985512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2985553_2986816_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2986822_2987575_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2987626_2987812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2988087_2988552_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2988583_2989243_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2989387_2991496_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2991492_2992443_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2992546_2993167_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2993270_2994011_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2995145_2996270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2996315_2996684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996925_2997876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2998911_2999454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2999839_3000790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3000786_3001695_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3001821_3002658_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3003170_3004280_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3004341_3005292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3005484_3006267_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3006280_3007045_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3007057_3008404_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3008429_3009359_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3009474_3010380_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3010397_3011597_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3011669_3012362_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3012410_3014837_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3014881_3015832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	3386287	3440028	4110588	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3386287_3387238_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3387642_3388287_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3388311_3388896_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3388996_3389614_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3389616_3391332_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3391328_3391637_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3391653_3392271_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3392315_3392618_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3392718_3393573_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3393760_3393985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3394154_3394427_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3394844_3395252_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3395621_3396416_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3396516_3397752_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3397820_3398837_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3398848_3400225_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3400221_3401418_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3401414_3402953_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3402949_3404209_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3406149_3407100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3407866_3408961_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3408953_3410288_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3410241_3410925_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3410950_3412114_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3412110_3413112_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3413111_3413984_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3413980_3414730_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3414726_3415518_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3415514_3416654_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3416929_3417715_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3417748_3418531_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3418534_3418924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3420063_3420927_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3420962_3422051_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3422047_3422998_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3423351_3426330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3427256_3428135_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3430083_3431034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3431030_3431498_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3431540_3432311_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3432331_3433132_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3433142_3434552_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3434646_3435432_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3435671_3436688_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3436795_3437188_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3437325_3438006_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3438010_3438982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3439077_3440028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	3446183	3505483	4110588	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3446183_3447947_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3448058_3448937_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3449049_3449865_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3449868_3450120_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3450204_3451221_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3451551_3451773_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3454133_3455051_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3455548_3456757_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3456836_3458408_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3458525_3459461_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3459649_3460594_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3461161_3466879_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3466884_3468012_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3468067_3468694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3468965_3469982_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3470077_3470788_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3470784_3471774_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3471869_3473501_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3473503_3474241_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3474396_3475269_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3475618_3476758_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3476754_3477414_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3477485_3478118_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3478147_3478666_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3478676_3479786_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3479832_3480687_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3480688_3481591_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3482813_3483764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905441.1|3485520_3486510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3486685_3487474_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3487470_3488502_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3488520_3489084_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3489139_3490660_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3490923_3491628_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3491635_3492364_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3492478_3492853_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3492895_3494185_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3494181_3495351_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3495347_3496187_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3496246_3497182_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3497194_3498145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3498243_3499206_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3499237_3499597_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3499721_3500624_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3500625_3502398_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3502432_3503209_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3504532_3505483_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	3520421	3578494	4110588	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3520421_3521372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3521500_3522634_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3522677_3523583_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3523585_3525286_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3525282_3526203_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3526210_3527188_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3527246_3528281_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3530255_3530492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3530618_3531482_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3531570_3532392_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3532471_3533209_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3533205_3534198_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3534350_3534974_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3535018_3536167_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3538490_3539441_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3539781_3540732_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3540830_3541781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3542077_3542575_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3542617_3544393_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3544400_3545267_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3545273_3546008_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3547177_3547972_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3548261_3548852_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3548885_3550214_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3550288_3551434_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3551545_3552544_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3552506_3552941_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3554457_3555342_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3555338_3556544_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3556540_3557401_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3557513_3559304_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3559344_3559989_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3560010_3560319_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3560484_3561771_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3563204_3564155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3566106_3567321_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3567426_3568416_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3568412_3569021_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3569033_3569663_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3569659_3570280_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3570311_3571103_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3571954_3572410_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3572428_3573355_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3573408_3574695_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3575625_3576498_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3576494_3577445_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3577543_3578494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011717	Bordetella pertussis strain I089 chromosome, complete genome	4110588	4009656	4074568	4110588	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4009656_4010142_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4010230_4010368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4010360_4011341_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4011607_4012417_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4012456_4013137_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4013130_4013589_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4013600_4013963_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4014045_4014729_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4014784_4015093_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4015111_4015426_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4015422_4017897_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4017904_4019296_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4019292_4019478_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4019456_4020158_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4020154_4020976_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4020956_4022081_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4022073_4023093_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4023298_4024189_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4024433_4025225_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4025307_4025682_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4025659_4027069_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4027061_4028444_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4028778_4030383_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4030460_4031432_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4031442_4032369_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4032759_4033710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033879_4035106_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035305_4036172_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036164_4037127_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037227_4038178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038276_4039227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039325_4040276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040272_4041766_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041762_4044870_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044866_4047935_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047931_4049182_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4049362_4050115_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4050156_4050801_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4050809_4051790_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051889_4052633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4052715_4053063_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053160_4054003_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054047_4054935_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054961_4055150_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055247_4056705_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056691_4058218_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058236_4058704_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4058703_4059726_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4059846_4060587_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4060641_4061742_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061743_4062934_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063053_4064070_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064388_4065060_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065056_4065965_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066176_4066824_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4070684_4071752_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071762_4072572_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4072661_4073435_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4073617_4074568_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
