The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	0	59497	4112692	transposase,tRNA	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	70134	123122	4112692	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	165943	226454	4112692	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220104_222948_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	234386	287974	4112692	transposase,tRNA,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	391907	449416	4112692	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418578_418848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	591470	652661	4112692	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591470_592421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592896_593787_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593783_594605_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594804_595296_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595314_596388_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596434_597538_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597613_598234_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598254_598764_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598818_599070_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599133_600267_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600274_600661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600657_603177_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603605_603944_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603940_604447_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604508_605309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605419_606361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606454_607990_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609669_611520_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611523_612357_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612356_613298_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613549_614521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614662_616951_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617257_618166_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618220_619186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619260_620922_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620993_621704_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621670_621835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621852_622803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623501_623885_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623942_624545_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624562_624964_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625079_625991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625987_626569_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627363_628098_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628138_629188_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629335_629914_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630300_631278_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631371_635766_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635966_636815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636973_637786_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637841_638792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638890_639691_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639752_640136_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640147_641500_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641787_642117_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642119_642869_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643051_643972_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644018_644231_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644253_644676_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644692_645793_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645889_647407_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647482_648322_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648343_649216_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649306_650401_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650694_651645_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651719_652661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	657985	704176	4112692	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657985_659011_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659051_659291_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659360_660950_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660949_661498_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661578_662151_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662169_663081_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663154_664123_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664245_665319_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665323_667144_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667220_668171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668259_668595_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668728_669379_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669400_670819_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670888_671644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671612_672371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672381_673263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673279_673987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673989_674748_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674957_676700_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676692_677217_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677256_678051_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678218_679292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929853.1|679390_680341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680592_680799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680870_681482_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682036_682288_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682280_682970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682987_683209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683226_684177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684816_685302_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685288_686566_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686568_687987_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688015_689071_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689076_689319_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689441_690044_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690472_691423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692097_692349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692411_692894_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692907_693096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693095_693491_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693487_693886_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693882_694305_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694312_694813_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695067_695586_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695595_695925_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695942_696233_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696258_698871_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698880_699240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699307_699841_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699837_700227_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700219_704176_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	710342	764272	4112692	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710342_712073_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712125_712554_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712556_713237_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713236_713695_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713731_714706_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714722_716039_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716070_716568_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716654_717344_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717343_718393_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718389_719184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719352_719703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719678_720236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721365_722316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724453_725683_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725685_727128_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727232_728378_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728409_729207_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729231_730791_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730787_733160_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733269_734373_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734372_735065_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735208_735910_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735894_736272_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737003_737954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738113_738986_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739326_739545_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739584_740964_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741005_742403_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742442_744095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744098_744983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744982_745924_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746002_747622_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747788_748604_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748671_749241_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749241_750192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750846_751944_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751977_753243_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753400_754351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754594_755185_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755200_757645_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757764_758736_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758867_759392_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759351_760302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760523_762719_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762791_763199_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763321_764272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	886861	1027432	4112692	transposase	Bacillus_phage(11.11%)	113	NA	NA
WP_023994644.1|886861_887878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888074_889058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890656_892045_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892075_893065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893175_894408_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894689_895490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895512_897744_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898531_898978_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898999_899746_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899889_900867_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901500_902112_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902105_903323_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903463_904414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904410_905130_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905250_907410_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907500_907770_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907858_908065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908063_908591_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908609_909389_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909556_910573_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910645_911137_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911147_912863_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914026_914977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914973_916806_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917204_917864_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918391_919072_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919353_920070_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920084_921386_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923530_926419_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926642_927995_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928023_928545_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928541_929996_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930030_930279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930384_931260_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931285_932341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932353_933145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933177_934548_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935724_936675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936727_936949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937108_937321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937440_938559_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938655_938871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939064_939316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939428_940379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940375_940759_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940813_942628_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942777_943605_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943650_944631_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944627_944840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944836_946018_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946181_946916_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946917_949530_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949665_951579_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952194_952605_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952702_953788_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953886_954837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954833_955808_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955932_956844_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957120_957513_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957642_958593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958622_958805_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959577_960759_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960974_961652_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961648_962374_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962499_963081_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963451_966133_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966135_967266_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967258_968344_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968430_969330_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969326_970655_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970669_971341_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971528_973244_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973245_973605_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973796_974111_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974153_975374_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975370_976312_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976308_977298_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977332_977917_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978015_978966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979046_979958_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980018_981164_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981183_982098_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982169_982919_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982918_983848_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984091_985918_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|986000_986642_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986831_987866_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989708_990773_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991570_992479_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993966_995241_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995394_995775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995782_996655_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996960_997341_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997551_998277_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|998372_999323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999427_1000477_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000614_1001631_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003139_1003712_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003771_1004503_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004554_1005472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006279_1009459_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010904_1011156_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011301_1011916_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012102_1014163_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014292_1015144_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015140_1015767_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015763_1017518_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017810_1020516_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020528_1022190_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022202_1023993_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024214_1025390_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025432_1026383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026481_1027432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	1048383	1099045	4112692	transposase,tRNA,holin	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1048383_1049334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049632_1050370_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050805_1051129_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051163_1051724_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051844_1052720_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052732_1053680_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053781_1054075_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054101_1056159_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056173_1056674_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056747_1058454_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059317_1060370_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060422_1060812_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060820_1061453_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061552_1062569_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063399_1064407_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064403_1066047_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066043_1066931_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067071_1067545_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067534_1068557_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068553_1069981_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070918_1071935_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072267_1073203_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073252_1075133_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075199_1075544_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075688_1076825_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076821_1077895_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078052_1079489_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079579_1080221_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080556_1081573_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083513_1084464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085768_1087190_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087453_1088170_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088254_1088572_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088612_1089026_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089027_1089387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089429_1090974_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091057_1091888_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091922_1093077_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093119_1093992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094108_1096397_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097603_1098068_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098094_1099045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	1114299	1179370	4112692	transposase,tRNA	Catovirus(25.0%)	46	NA	NA
WP_010929591.1|1114299_1115250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115830_1116538_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116896_1117883_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118022_1119036_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119032_1119983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1120000_1120141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120095_1120554_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120590_1121904_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121921_1122293_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122289_1123753_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123893_1124622_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124603_1127453_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127665_1128616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128783_1129608_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129607_1130486_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131390_1132506_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132534_1133329_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133325_1135191_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135269_1135902_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135898_1136201_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136243_1137764_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137770_1138526_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138555_1139660_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139762_1141463_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141444_1142422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142431_1143712_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143704_1144400_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144433_1145261_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145542_1148773_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149508_1153435_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1155334_1157131_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157130_1158099_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158168_1159014_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159081_1159636_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159682_1160633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160731_1161364_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161527_1163810_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163964_1166661_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166786_1167275_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169685_1172556_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172601_1173816_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174045_1175473_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175570_1176662_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176674_1177433_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177520_1178423_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178419_1179370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	1320053	1388540	4112692	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1320053_1321004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321772_1322411_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1323300_1323747_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1323828_1324530_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324530_1325298_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1325294_1326533_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326532_1327459_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327561_1328677_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328692_1329643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329996_1330578_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330574_1331408_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331618_1332932_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1333108_1333990_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1334009_1334861_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334913_1336002_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1336112_1337240_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1337474_1338086_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1338184_1339135_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1339356_1339734_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339881_1340379_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1340375_1340903_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1341036_1341852_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1341864_1343046_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1343093_1343987_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1344113_1344584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344709_1345537_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345565_1346342_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1346338_1346614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346628_1347093_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1347104_1347806_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1347915_1348416_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348498_1349677_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1351304_1351640_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351827_1353276_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1353333_1353678_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353784_1354324_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1354416_1355367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1355384_1355624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356105_1356537_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1356718_1357123_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358359_1358683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358685_1359573_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359605_1360031_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360102_1360456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360695_1361202_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361240_1362572_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362631_1363447_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363443_1364298_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367360_1369904_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371270_1373025_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373021_1375142_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375146_1377342_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377338_1380680_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383482_1384433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1384498_1384678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384794_1385550_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1385536_1386682_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1387589_1388540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	1449031	1504519	4112692	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1449031_1449982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451183_1451630_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451622_1453098_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453094_1453850_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453842_1454853_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454842_1456519_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456831_1457164_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457177_1457573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457582_1457909_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1457905_1458232_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458158_1459181_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459177_1459528_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459575_1460004_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460011_1461385_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461525_1461903_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462165_1463473_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463533_1464364_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464360_1464849_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464890_1466411_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466454_1466931_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467734_1470332_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470361_1471183_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471909_1472659_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472842_1473721_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473818_1474535_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474549_1475110_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475276_1476041_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476060_1476918_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476914_1478114_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478153_1479488_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479540_1481877_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1482002_1482566_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482574_1483666_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483737_1484193_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484193_1484988_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484984_1486166_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486152_1486758_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486754_1487528_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487539_1488367_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488528_1490892_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490959_1491679_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491802_1492228_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1492262_1493213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493330_1494257_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494322_1495480_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495460_1495928_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1496075_1497026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497042_1497477_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497466_1497817_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498013_1499168_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1499164_1500337_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500384_1501278_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501323_1501761_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501820_1502510_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502519_1503470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1503568_1504519_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	1599216	1659128	4112692	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1599216_1599705_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1599822_1600401_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1600506_1600875_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1600973_1601924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1601930_1603043_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1603729_1604932_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1605135_1607796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1607808_1611213_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1611880_1614106_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614152_1614479_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1614529_1615138_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615236_1616187_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1616285_1617236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1617305_1618070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1618066_1618603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1618769_1619621_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1619680_1620307_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1620303_1621254_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1621352_1622465_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1622454_1623456_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1623561_1625073_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1625069_1626374_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1626485_1627046_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1627313_1627868_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1628323_1628539_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1628793_1631391_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1631387_1632575_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1633233_1633848_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1633936_1635058_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1635075_1635981_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1636873_1637824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1638005_1638758_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1638826_1639486_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1639482_1640211_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1640223_1642503_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1642527_1642731_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1642772_1643405_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1643540_1644458_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1644454_1645168_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1645405_1646176_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1646180_1646780_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1647024_1648515_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1648573_1648858_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1649423_1650350_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1650486_1651227_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1651393_1652770_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1652951_1653857_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1655508_1657311_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1657428_1658079_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1658177_1659128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	1704300	1759891	4112692	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1704300_1705251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1705309_1706083_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1706075_1707632_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1707628_1708579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1709905_1710508_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1710747_1711449_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1711442_1712225_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1712409_1713360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1713458_1714196_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1714385_1715144_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1715190_1716180_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1716357_1717326_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1718865_1719834_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1719842_1720784_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1721257_1722268_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1722258_1723773_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1723769_1725116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1725118_1726153_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1726202_1727828_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1728380_1729331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1729435_1730383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1730436_1732251_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1732243_1732918_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1733047_1736122_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1736135_1736435_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1736749_1737373_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1737616_1738486_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1738463_1739408_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1739493_1740420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1740532_1741312_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1741302_1742499_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1742529_1743480_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1743701_1744391_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1744455_1745211_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1745262_1746255_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1746264_1747218_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1747333_1748296_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1749697_1750126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1750122_1751073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1751366_1752089_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1752527_1753715_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1753718_1754069_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1755818_1756790_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1756803_1757517_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1757521_1758439_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1758545_1758842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1758940_1759891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	1992654	2062306	4112692	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1992654_1995312_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1995389_1996592_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996588_1997101_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1997223_1997661_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997937_1998888_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998986_1999937_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|2000100_2001996_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2002109_2002277_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2002340_2002577_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2002945_2004097_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2005660_2006611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2007062_2008064_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2008236_2009094_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2009090_2010353_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2010453_2010828_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2010900_2012088_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2012172_2012943_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2013056_2013821_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2013771_2015073_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2015069_2015876_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2017620_2018592_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018748_2019261_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2019419_2020394_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2021394_2022189_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2022214_2023021_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2023131_2023722_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2023732_2024911_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2025013_2025388_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2025640_2026972_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2027038_2030269_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2031759_2032506_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2032590_2033052_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2033089_2034148_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2034110_2035940_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2035979_2036552_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2037976_2038798_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2039116_2040439_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2040798_2041434_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2041393_2042344_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2043214_2044087_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2044164_2045304_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2045662_2046919_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2046924_2047452_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2047456_2048275_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2048274_2048997_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2049018_2049333_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2049350_2050499_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2050529_2051405_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2051401_2052721_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2052793_2053990_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2054000_2055488_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2058082_2058982_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2059119_2060085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2060183_2061134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2061355_2062306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2073802	2123198	4112692	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2073802_2074753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2075890_2076187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2076361_2077714_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2077856_2078873_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2080852_2081866_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2081952_2082858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2083014_2083359_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2083516_2083975_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2083988_2086205_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2086201_2087263_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2087291_2088266_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2088217_2089036_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2089048_2089657_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2089831_2090227_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2090245_2091685_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2091713_2092061_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2092079_2093030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2093682_2094633_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2094716_2096534_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2096607_2097255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2097267_2098197_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2098366_2098831_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2099078_2099759_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2099807_2101499_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2101514_2102066_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2102062_2102434_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2102546_2103383_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2103393_2103918_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2104015_2104195_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2104324_2105299_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2105429_2105786_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2105775_2106651_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2106749_2107634_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2107655_2108951_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2109899_2110550_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2110637_2112158_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2112415_2114281_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2115326_2116277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2116294_2116435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2117249_2117609_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2117596_2119033_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2119029_2119683_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2119679_2120873_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2120976_2122251_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2122247_2123198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2134402	2175093	4112692	transposase,tRNA,protease	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2134402_2135353_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2135451_2136402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2136361_2136775_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2137059_2137359_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2137768_2140051_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2140736_2142767_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2142786_2142999_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2143276_2143816_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2143929_2145225_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2145301_2146459_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2146642_2147542_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2147560_2148865_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2148830_2149937_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2150024_2150261_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2150399_2151470_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2151473_2152829_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2152855_2154013_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2154018_2154657_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2154658_2155954_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2156003_2157290_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2157305_2157812_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2157808_2158957_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2158984_2159410_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2159732_2162615_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2162707_2163463_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2164228_2165578_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2165676_2166627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2166725_2167676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2167749_2168223_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2168248_2169457_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2169453_2170227_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2170226_2170850_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2171015_2171276_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2171579_2172161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2172227_2172482_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2172468_2175093_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2202876	2268425	4112692	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2202876_2203827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204027_2204837_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2204961_2205912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2205908_2206802_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2206926_2207121_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207120_2207462_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2207471_2209334_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2209463_2209976_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2209978_2210302_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210303_2210714_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2210751_2211963_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2211980_2212493_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2212708_2213200_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2213452_2215489_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2215566_2216769_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2216897_2217548_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219105_2220056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2220626_2220839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2220856_2221588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2221622_2222264_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222256_2222925_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225137_2225914_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2225935_2227093_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227089_2227521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2227517_2228315_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228334_2228736_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2228802_2229774_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2229839_2231063_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231290_2232241_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232364_2234818_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235006_2236311_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2236415_2237069_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237071_2238382_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2238560_2239139_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239250_2239451_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2239796_2240363_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2240446_2240650_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2240956_2241277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241318_2241600_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2241674_2242931_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243313_2243643_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245213_2246035_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246034_2247174_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247180_2248077_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2248091_2249999_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250358_2252971_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253023_2255324_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255320_2256529_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2256790_2257165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257161_2258112_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2258210_2260205_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2260264_2261230_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2261219_2264081_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2264083_2264590_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2264694_2265903_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2265904_2266843_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2267004_2267478_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2267474_2268425_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2354602	2418180	4112692	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2354602_2355553_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2355854_2356331_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2356954_2358592_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2358622_2359936_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2360069_2360387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2360487_2361810_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361806_2362757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2362855_2363806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2364335_2365358_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2365386_2366217_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2366233_2367931_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2367995_2369072_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2369231_2370095_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2370125_2370695_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2370711_2371563_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2372620_2373502_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2373576_2374566_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2374628_2375579_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2375641_2376499_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2376558_2377047_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2378619_2379810_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2379806_2381393_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2381411_2382479_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2382583_2384128_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2384547_2386122_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2386238_2387246_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2387242_2388082_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2388086_2389724_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2389720_2390671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2390688_2390832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2390813_2392088_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2392117_2392408_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2392480_2393494_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2393513_2394776_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2394778_2395702_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2395698_2397192_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2397202_2398135_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2398316_2399642_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2399676_2401032_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2401092_2402613_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2402767_2403499_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2403596_2404907_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2404922_2405834_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2405824_2406418_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2406479_2406866_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2406877_2407348_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2407359_2407983_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2408003_2410751_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2417229_2418180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2538328	2604049	4112692	transposase,tRNA,protease	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2538328_2540272_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540268_2541189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541208_2541796_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541788_2542679_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542675_2543437_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543442_2544327_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544349_2546143_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546273_2547761_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547798_2548857_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548856_2549357_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549369_2549969_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549965_2550466_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550467_2551697_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551886_2552126_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552308_2553061_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553062_2553998_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554079_2555066_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555065_2556124_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556180_2556363_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556414_2557008_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557116_2557716_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557712_2558423_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558424_2559252_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561068_2562310_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562321_2563095_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563121_2564072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564170_2564953_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565041_2566268_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566993_2568379_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568397_2569003_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2568999_2570856_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570852_2571653_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571667_2572861_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572928_2573903_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574025_2575249_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575359_2577564_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577858_2578518_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578525_2578732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579070_2579826_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580096_2580612_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580884_2581202_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581389_2581626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581916_2583272_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583318_2584659_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584760_2585393_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585392_2587762_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587794_2588754_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588740_2589427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589423_2589756_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589871_2590822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590920_2591871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591867_2593934_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593933_2594206_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594900_2594990_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594989_2596774_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596797_2598963_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598973_2599573_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602394_2603090_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603098_2604049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2690166	2730835	4112692	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690166_2691117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691227_2691410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691509_2692106_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692289_2693381_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693880_2694291_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694349_2694679_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694696_2697114_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697126_2698149_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698223_2698583_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698598_2698796_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699131_2700082_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700276_2700726_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700722_2701673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701783_2703232_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703346_2703592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703731_2704682_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704926_2705640_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705762_2705990_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706284_2706923_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707031_2708066_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708062_2709013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709428_2709953_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709956_2710226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710424_2711486_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711569_2713204_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713205_2714009_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714037_2714997_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2715000_2716515_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716551_2717556_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717987_2718458_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718493_2719105_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719135_2719759_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719839_2721372_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721406_2722624_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722691_2723723_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723719_2724889_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724882_2725563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725724_2726567_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726729_2727701_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727872_2728751_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728773_2729844_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729884_2730835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2734946	2811808	4112692	transposase,tRNA	Bacillus_virus(25.0%)	57	NA	NA
WP_005013747.1|2734946_2735897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247980.1|2736018_2736336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247978.1|2736646_2737060_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2737073_2738309_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2738316_2739111_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2739107_2739911_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2739937_2740915_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2740943_2742515_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2742525_2743347_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2745071_2746502_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2746514_2747204_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2747299_2748640_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2748641_2748899_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2749252_2750845_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2750941_2752402_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2752624_2753236_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2756982_2757933_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2758348_2760985_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2760981_2762106_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2762102_2763485_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2763620_2764088_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2764209_2764878_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_010931045.1|2764950_2766153_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2766154_2767885_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2768002_2768311_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2768323_2769136_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2770016_2772182_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2772307_2773096_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2773135_2774740_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2774820_2775561_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2775568_2776063_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2776435_2777455_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2777451_2778834_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2778866_2779727_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2780730_2781612_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2781670_2782108_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2782198_2783170_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2783208_2784153_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2784248_2785058_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2785134_2785509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2785615_2786308_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2786300_2786717_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786827_2787460_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787488_2787932_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787953_2789045_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789099_2789900_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790035_2790656_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790795_2791269_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792408_2793359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793355_2801017_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801257_2805304_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805616_2806198_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806194_2807493_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807572_2808601_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808861_2809812_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2809910_2810861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2810857_2811808_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2817180	2874338	4112692	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2817180_2818131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819292_2819799_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819795_2820560_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820575_2820860_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2820924_2821914_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822085_2823015_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2822986_2823673_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823706_2824252_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824296_2825562_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825558_2826461_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827642_2828587_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828681_2830199_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830240_2831869_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2831976_2832858_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2835970_2836345_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836369_2836708_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836751_2838386_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838424_2839771_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2839878_2841300_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841369_2841954_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842056_2843007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843141_2844248_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844258_2845356_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845500_2846706_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846712_2847234_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2847230_2847713_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847718_2847970_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847950_2848436_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848571_2852033_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852050_2852935_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852944_2853376_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853622_2854126_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854203_2855604_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855678_2856554_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856550_2857558_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858025_2858331_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858421_2859012_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859202_2860219_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860410_2862747_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862829_2863264_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2863362_2864313_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864411_2865362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2865358_2866153_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2866184_2866889_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2866963_2867764_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2867760_2868168_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2868164_2868806_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2868798_2870799_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2872059_2873391_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2873387_2874338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2888814	2930173	4112692	transposase,protease	uncultured_Mediterranean_phage(40.0%)	31	NA	NA
WP_010930800.1|2888814_2889765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2889782_2889941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2890095_2893917_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894073_2894742_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894746_2896420_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896438_2897758_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897762_2900078_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900133_2902302_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2902298_2907479_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907577_2907892_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908119_2908365_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908459_2908978_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909077_2910283_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910398_2911796_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911912_2912491_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912563_2913955_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914122_2915073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915353_2915974_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915970_2916384_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916380_2917424_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917479_2917668_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917677_2918442_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918532_2919189_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919280_2920039_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920064_2921666_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921866_2922871_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922971_2923235_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923352_2924129_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924719_2925670_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928053_2929166_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929222_2930173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	2960559	3014790	4112692	transposase	Planktothrix_phage(16.67%)	50	NA	NA
WP_005012067.1|2960559_2961510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2961527_2961677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2961630_2962527_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964804_2967030_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967194_2968283_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968239_2968893_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2968940_2969738_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970269_2971220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2971300_2972449_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972505_2973456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973554_2973860_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973888_2974323_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974324_2975569_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975565_2976276_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976290_2977202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977564_2977969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977965_2978424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2978430_2979339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2979335_2980202_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980188_2981016_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981026_2982154_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983231_2984470_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984511_2985774_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985780_2986533_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986584_2986770_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987045_2987510_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987541_2988201_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988345_2990454_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990450_2991401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991504_2992125_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2992228_2992969_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994103_2995228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995273_2995642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995883_2996834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997869_2998412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998609_2998780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998797_2999748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2999744_3000653_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000779_3001616_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002128_3003238_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003299_3004250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3004442_3005225_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3005238_3006003_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3006015_3007362_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3007387_3008317_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3008432_3009338_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3009355_3010555_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3010627_3011320_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3011368_3013795_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3013839_3014790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	3091963	3146256	4112692	transposase,tRNA,protease	Clostridium_phage(20.0%)	54	NA	NA
WP_010931196.1|3091963_3093424_-|protease	metalloprotease TldD	protease	NA	NA	NA	NA
WP_010931197.1|3093434_3094265_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_010931198.1|3094389_3094761_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_005012067.1|3094859_3095810_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809257.1|3095908_3096712_-	anti-sigma factor	NA	NA	NA	NA	NA
WP_004568255.1|3096708_3097236_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003809253.1|3097286_3097655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809252.1|3097855_3098338_-	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA	NA
WP_003819714.1|3098468_3098921_+	membrane protein	NA	NA	NA	NA	NA
WP_003819713.1|3098928_3099342_-	VOC family protein	NA	NA	NA	NA	NA
WP_023853532.1|3099463_3100138_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV79	Clostridium_phage	30.0	2.7e-07
WP_033446283.1|3100256_3101582_+	chromate efflux transporter	NA	NA	NA	NA	NA
WP_010931201.1|3101584_3103054_-	peptidase	NA	NA	NA	NA	NA
WP_010931202.1|3103065_3105264_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_004568261.1|3105426_3105864_-	DUF2946 domain-containing protein	NA	NA	NA	NA	NA
WP_010931203.1|3106165_3106462_+	DUF2282 domain-containing protein	NA	NA	NA	NA	NA
WP_023853526.1|3106473_3107343_+	DUF692 domain-containing protein	NA	NA	NA	NA	NA
WP_010931205.1|3107357_3108113_+	DUF2063 domain-containing protein	NA	NA	NA	NA	NA
WP_010931206.1|3108116_3108614_+	DoxX family protein	NA	NA	NA	NA	NA
WP_003809223.1|3110207_3110555_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003809222.1|3110675_3111023_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003809221.1|3111022_3111634_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931208.1|3111637_3113617_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004568266.1|3113620_3114535_-	ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003809217.1|3114743_3115298_-	response regulator	NA	NA	NA	NA	NA
WP_019248645.1|3115294_3116506_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_023998300.1|3116700_3117609_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931212.1|3117846_3118713_-	pirin family protein	NA	NA	NA	NA	NA
WP_010931213.1|3119471_3120278_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931214.1|3120331_3121690_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931215.1|3121686_3122877_-	CoA transferase	NA	NA	NA	NA	NA
WP_003819684.1|3122934_3123846_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931216.1|3123869_3124859_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931217.1|3124883_3125351_-	acyl dehydratase	NA	NA	NA	NA	NA
WP_019247777.1|3125364_3125826_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_005015810.1|3126833_3127784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3127929_3129054_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3129259_3129823_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3130817_3131300_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3131457_3132705_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3132924_3133581_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3133616_3134846_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_158516320.1|3134940_3135096_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3135113_3136064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3136162_3137113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3137204_3138620_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3138625_3139762_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3139831_3140203_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3140290_3141037_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3141073_3142138_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3142326_3142719_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3142728_3143157_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3143452_3144550_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3144891_3146256_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
>prophage 29
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	3386292	3506537	4112692	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3386292_3387243_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3387647_3388292_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3388316_3388901_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3389001_3389619_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3389621_3391337_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3391333_3391642_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3391658_3392276_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3392320_3392623_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3392723_3393578_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3393765_3393990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3394159_3394432_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3394849_3395257_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3395626_3396421_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3396521_3397757_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3397825_3398842_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3398853_3400230_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3400226_3401423_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3401419_3402958_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3402954_3404214_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3406154_3407105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3407871_3408966_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3408958_3410293_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3410246_3410930_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3410955_3412119_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3412115_3413117_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3413116_3413989_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3413985_3414735_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3414731_3415523_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3415519_3416659_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3416934_3417720_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3417753_3418536_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3418539_3418929_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3420068_3420932_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3420967_3422056_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3422052_3423003_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3423356_3426335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3427261_3428140_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3429104_3430055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3431137_3432088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3432084_3432552_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3432594_3433365_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3433385_3434186_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3434196_3435606_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3435700_3436486_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3436725_3437742_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3437849_3438242_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3438379_3439060_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3439064_3440036_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3440131_3441082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3442586_3443288_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3443287_3444712_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3445781_3447122_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3447237_3449001_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3449112_3449991_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3450103_3450919_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3450922_3451174_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3451258_3452275_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3452605_3452827_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3455187_3456105_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3456602_3457811_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3457890_3459462_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3459579_3460515_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3460703_3461648_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3462215_3467933_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3467938_3469066_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3469121_3469748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3470019_3471036_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3471131_3471842_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3471838_3472828_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3472923_3474555_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3474557_3475295_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3475450_3476323_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3476672_3477812_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3477808_3478468_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3478539_3479172_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3479201_3479720_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3479730_3480840_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3480886_3481741_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3481742_3482645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3483867_3484818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3486574_3487564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3487739_3488528_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3488524_3489556_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3489574_3490138_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3490193_3491714_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3491977_3492682_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3492689_3493418_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3493532_3493907_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3493949_3495239_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3495235_3496405_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3496401_3497241_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3497300_3498236_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3498248_3499199_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3499297_3500260_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3500291_3500651_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3500775_3501678_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3501679_3503452_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3503486_3504263_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3505586_3506537_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	3521475	3579548	4112692	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3521475_3522426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3522554_3523688_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3523731_3524637_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3524639_3526340_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3526336_3527257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3527264_3528242_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3528300_3529335_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3531309_3531546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3531672_3532536_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3532624_3533446_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3533525_3534263_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3534259_3535252_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3535404_3536028_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3536072_3537221_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3539544_3540495_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3540835_3541786_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3541884_3542835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3543131_3543629_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3543671_3545447_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3545454_3546321_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3546327_3547062_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3548231_3549026_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3549315_3549906_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3549939_3551268_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3551342_3552488_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3552599_3553598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3553560_3553995_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3555511_3556396_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3556392_3557598_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3557594_3558455_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3558567_3560358_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3560398_3561043_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3561064_3561373_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3561538_3562825_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3564258_3565209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3567160_3568375_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3568480_3569470_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3569466_3570075_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3570087_3570717_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3570713_3571334_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3571365_3572157_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3573008_3573464_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3573482_3574409_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3574462_3575749_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3576679_3577552_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3577548_3578499_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3578597_3579548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011716	Bordetella pertussis strain I088 chromosome, complete genome	4112692	4011760	4076672	4112692	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4011760_4012246_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4012334_4012472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4012464_4013445_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4013711_4014521_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4014560_4015241_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4015234_4015693_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4015704_4016067_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4016149_4016833_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4016888_4017197_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4017215_4017530_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4017526_4020001_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4020008_4021400_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4021396_4021582_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4021560_4022262_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4022258_4023080_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4023060_4024185_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4024177_4025197_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4025402_4026293_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4026537_4027329_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4027411_4027786_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4027763_4029173_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4029165_4030548_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_077082442.1|4030882_4032487_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4032564_4033536_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4033546_4034473_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4034863_4035814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4035983_4037210_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4037409_4038276_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4038268_4039231_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4039331_4040282_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4040380_4041331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4041429_4042380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4042376_4043870_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4043866_4046974_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4046970_4050039_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4050035_4051286_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4051466_4052219_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4052260_4052905_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4052913_4053894_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4053993_4054737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4054819_4055167_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4055264_4056107_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4056151_4057039_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4057065_4057254_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4057351_4058809_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4058795_4060322_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4060340_4060808_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4060807_4061830_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4061950_4062691_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4062745_4063846_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4063847_4065038_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4065157_4066174_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4066492_4067164_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4067160_4068069_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4068280_4068928_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4072788_4073856_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4073866_4074676_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4074765_4075539_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4075539_4075704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4075721_4076672_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
