The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	0	59497	4109549	tRNA,transposase	Natrialba_phage(12.5%)	54	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013036.1|22911_23100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	70134	123122	4109549	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_005012808.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	165943	226454	4109549	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220104_222948_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	234386	287974	4109549	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	391907	449416	4109549	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414475_415390_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415386_416046_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416135_417059_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417064_417520_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417516_418620_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418578_418848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418807_420427_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420423_421482_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421611_422106_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422198_423176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423371_424577_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424573_426085_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426100_427414_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427604_427784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428193_428928_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431372_432323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432454_432853_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433263_433734_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433822_434167_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434266_435667_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437455_437974_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438084_438840_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439035_440268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440260_441046_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441112_442084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442094_443072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443197_444370_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444396_445425_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445490_446684_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448465_449416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	591470	652661	4109549	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591470_592421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592896_593787_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593783_594605_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594804_595296_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595314_596388_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596434_597538_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597613_598234_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598254_598764_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598818_599070_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599133_600267_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600274_600661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600657_603177_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603605_603944_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603940_604447_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604508_605309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605419_606361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606454_607990_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609669_611520_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611523_612357_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612356_613298_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613549_614521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614662_616951_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617257_618166_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618220_619186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619260_620922_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620993_621704_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621670_621835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621852_622803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623501_623885_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623942_624545_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624562_624964_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625079_625991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625987_626569_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627363_628098_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628138_629188_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629335_629914_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630300_631278_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631371_635766_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635966_636815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636973_637786_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637841_638792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638890_639691_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639752_640136_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640147_641500_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641787_642117_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642119_642869_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643051_643972_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644018_644231_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644253_644676_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644692_645793_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645889_647407_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647482_648322_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648343_649216_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649306_650401_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650694_651645_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651719_652661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	657985	704176	4109549	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657985_659011_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659051_659291_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659360_660950_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660949_661498_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661578_662151_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662169_663081_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663154_664123_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664245_665319_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665323_667144_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667220_668171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668259_668595_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668728_669379_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669400_670819_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670888_671644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671612_672371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672381_673263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673279_673987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673989_674748_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674957_676700_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676692_677217_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677256_678051_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678218_679292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679390_680341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680592_680799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680870_681482_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682036_682288_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682280_682970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682987_683209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683226_684177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684816_685302_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685288_686566_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686568_687987_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688015_689071_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689076_689319_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689441_690044_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690472_691423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692097_692349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692411_692894_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692907_693096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693095_693491_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693487_693886_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693882_694305_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694312_694813_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695067_695586_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695595_695925_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695942_696233_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696258_698871_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698880_699240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699307_699841_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699837_700227_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700219_704176_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	710342	764272	4109549	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710342_712073_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712125_712554_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712556_713237_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713236_713695_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713731_714706_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714722_716039_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716070_716568_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716654_717344_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717343_718393_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718389_719184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719352_719703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719678_720236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721365_722316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724453_725683_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725685_727128_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727232_728378_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728409_729207_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729231_730791_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730787_733160_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733269_734373_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734372_735065_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735208_735910_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735894_736272_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737003_737954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738113_738986_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739326_739545_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739584_740964_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741005_742403_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742442_744095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744098_744983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744982_745924_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746002_747622_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747788_748604_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748671_749241_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749241_750192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750846_751944_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751977_753243_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753400_754351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754594_755185_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755200_757645_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757764_758736_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758867_759392_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759351_760302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760523_762719_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762791_763199_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763321_764272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	886861	954837	4109549	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886861_887878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888074_889058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890656_892045_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892075_893065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893175_894408_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894689_895490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895512_897744_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898531_898978_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898999_899746_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899889_900867_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901500_902112_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902105_903323_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903463_904414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904410_905130_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905250_907410_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907500_907770_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907858_908065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908063_908591_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908609_909389_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909556_910573_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910645_911137_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911147_912863_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914026_914977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914973_916806_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917204_917864_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918391_919072_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919353_920070_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920084_921386_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923530_926419_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926642_927995_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928023_928545_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928541_929996_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930030_930279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930384_931260_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931285_932341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932353_933145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933177_934548_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935724_936675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936727_936949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937108_937321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937440_938559_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938655_938871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939064_939316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939428_940379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940375_940759_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940813_942628_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942777_943605_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943650_944631_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944627_944840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944836_946018_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946181_946916_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946917_949530_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949665_951579_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952194_952605_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952702_953788_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953886_954837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	998372	1070889	4109549	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_010929591.1|998372_999323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999427_1000477_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000614_1001631_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003139_1003712_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003771_1004503_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004554_1005472_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006279_1009459_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009455_1010838_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010907_1011159_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011304_1011919_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012105_1014166_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014295_1015147_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015143_1015770_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015766_1017521_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017813_1020519_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020531_1022193_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022205_1023996_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024217_1025393_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_023852617.1|1025435_1026386_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026484_1027225_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027419_1029456_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029473_1030484_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030601_1031795_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031824_1032598_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032594_1033785_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033810_1034749_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034745_1037094_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037248_1037890_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039219_1039372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039403_1039952_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039970_1040456_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040633_1041572_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041574_1041892_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041937_1042882_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044562_1045213_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045266_1045602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045598_1046459_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046475_1046757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046830_1047094_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047337_1048288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048586_1049324_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049759_1050083_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050117_1050678_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050798_1051674_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051686_1052634_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052735_1053029_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053055_1055113_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055127_1055628_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055701_1057408_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058271_1059324_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059376_1059766_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059774_1060407_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060506_1061523_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062353_1063361_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063357_1065001_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064997_1065885_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066025_1066499_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066488_1067511_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067507_1068935_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069872_1070889_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	1074642	1136718	4109549	tRNA,holin,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1074642_1075779_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075775_1076849_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077006_1078443_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078533_1079175_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1079510_1080527_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1082467_1083418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084722_1086144_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086407_1087124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087208_1087526_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087566_1087980_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1087981_1088341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088383_1089928_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090011_1090842_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1090876_1092031_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092073_1092946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093062_1095351_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096557_1097022_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097048_1097999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098016_1098154_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098366_1099143_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099187_1100045_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100066_1101083_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101217_1102258_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102452_1104534_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104769_1106263_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106493_1107288_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107508_1108867_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1108863_1109706_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109724_1111611_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111552_1111804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1111848_1112481_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112499_1113102_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113253_1114204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114784_1115492_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1115850_1116837_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1116976_1117990_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1117986_1118937_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1118954_1119095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119049_1119508_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119544_1120858_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1120875_1121247_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121243_1122707_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1122847_1123576_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123557_1126407_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126619_1127570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1127737_1128562_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1128561_1129440_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1130344_1131460_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1131488_1132283_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1132279_1134145_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1134223_1134856_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1134852_1135155_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1135197_1136718_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	1317958	1386445	4109549	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317958_1318909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319677_1320316_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321205_1321652_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321733_1322435_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322435_1323203_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323199_1324438_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324437_1325364_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325466_1326582_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326597_1327548_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327901_1328483_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328479_1329313_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329523_1330837_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331013_1331895_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331914_1332766_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332818_1333907_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334017_1335145_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335379_1335991_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336089_1337040_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337261_1337639_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337786_1338284_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338280_1338808_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338941_1339757_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1339769_1340951_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340998_1341892_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342018_1342489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342614_1343442_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343470_1344247_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344243_1344519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344533_1344998_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345009_1345711_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345820_1346321_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346403_1347582_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349209_1349545_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349732_1351181_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351238_1351583_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351689_1352229_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352321_1353272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353289_1353529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354010_1354442_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354623_1355028_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356264_1356588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356590_1357478_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357510_1357936_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358007_1358361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358600_1359107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359145_1360477_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360536_1361352_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361348_1362203_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365265_1367809_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369175_1370930_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370926_1373047_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373051_1375247_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375243_1378585_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381387_1382338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382403_1382583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382699_1383455_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383441_1384587_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385494_1386445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	1446936	1502424	4109549	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446936_1447887_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449088_1449535_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449527_1451003_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450999_1451755_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451747_1452758_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452747_1454424_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454736_1455069_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455082_1455478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455487_1455814_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455810_1456137_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456063_1457086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457082_1457433_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457480_1457909_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457916_1459290_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459430_1459808_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460070_1461378_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461438_1462269_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462265_1462754_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462795_1464316_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464359_1464836_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465639_1468237_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468266_1469088_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469814_1470564_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470747_1471626_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471723_1472440_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472454_1473015_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473181_1473946_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473965_1474823_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474819_1476019_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476058_1477393_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477445_1479782_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479907_1480471_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480479_1481571_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481642_1482098_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482098_1482893_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482889_1484071_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484057_1484663_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484659_1485433_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485444_1486272_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486433_1488797_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488864_1489584_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489707_1490133_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490167_1491118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491235_1492162_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492227_1493385_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493365_1493833_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1493980_1494931_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494947_1495382_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495371_1495722_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495918_1497073_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497069_1498242_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498289_1499183_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499228_1499666_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499725_1500415_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500424_1501375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1501473_1502424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	1597121	1665208	4109549	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1597121_1597610_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1597727_1598306_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1598411_1598780_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1598878_1599829_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1599835_1600948_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1601634_1602837_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1603040_1605701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1605713_1609118_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1609785_1612011_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1612057_1612384_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1612434_1613043_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1613141_1614092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1614161_1614926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1614922_1615459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1615625_1616477_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1616536_1617163_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1617159_1618110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1618208_1619321_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1619310_1620312_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1620417_1621929_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1621925_1623230_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1623341_1623902_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1624169_1624724_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1625179_1625395_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1625649_1628247_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1628243_1629431_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1630090_1630705_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1630793_1631915_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1631932_1632838_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1633730_1634681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1634862_1635615_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1635683_1636343_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1636339_1637068_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1637080_1639360_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1639384_1639588_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1639629_1640262_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1640397_1641315_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1641311_1642025_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1642262_1643033_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1643037_1643637_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1643881_1645372_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1645430_1645715_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1646280_1647207_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1647343_1648084_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1648250_1649627_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1649808_1650714_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1652365_1654168_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1654285_1654936_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1655034_1655985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1656006_1657227_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1657412_1658825_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1658888_1659956_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1659955_1661443_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1661452_1662397_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1662556_1663255_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1663332_1664238_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1664257_1665208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	1701157	1756748	4109549	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701157_1702108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702166_1702940_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702932_1704489_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704485_1705436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1706762_1707365_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707604_1708306_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708299_1709082_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709266_1710217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710315_1711053_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711242_1712001_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712047_1713037_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713214_1714183_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715722_1716691_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716699_1717641_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718114_1719125_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719115_1720630_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720626_1721973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1721975_1723010_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723059_1724685_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725237_1726188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726292_1727240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727293_1729108_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729100_1729775_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729904_1732979_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732992_1733292_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733606_1734230_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1734473_1735343_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735320_1736265_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736350_1737277_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737389_1738169_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738159_1739356_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739386_1740337_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740558_1741248_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741312_1742068_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742119_1743112_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743121_1744075_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744190_1745153_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746554_1746983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1746979_1747930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1748223_1748946_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749384_1750572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1750575_1750926_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752675_1753647_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753660_1754374_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754378_1755296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755402_1755699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755797_1756748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	1989512	2059164	4109549	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1989512_1992170_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1992247_1993450_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1993446_1993959_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1994081_1994519_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1994795_1995746_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1995844_1996795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1996958_1998854_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1998967_1999135_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1999198_1999435_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1999803_2000955_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2002518_2003469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2003920_2004922_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2005094_2005952_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2005948_2007211_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2007311_2007686_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2007758_2008946_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2009030_2009801_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2009914_2010679_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2010629_2011931_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2011927_2012734_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2014478_2015450_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2015606_2016119_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2016277_2017252_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2018252_2019047_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2019072_2019879_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2019989_2020580_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2020590_2021769_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2021871_2022246_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2022498_2023830_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2023896_2027127_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2028617_2029364_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2029448_2029910_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2029947_2031006_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2030968_2032798_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2032837_2033410_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2034834_2035656_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2035974_2037297_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2037656_2038292_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2038251_2039202_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2040072_2040945_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2041022_2042162_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2042520_2043777_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2043782_2044310_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2044314_2045133_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2045132_2045855_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2045876_2046191_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2046208_2047357_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2047387_2048263_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2048259_2049579_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2049651_2050848_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2050858_2052346_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2054940_2055840_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2055977_2056943_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2057041_2057992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2058213_2059164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2070660	2120056	4109549	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2070660_2071611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2072748_2073045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2073219_2074572_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2074714_2075731_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2077710_2078724_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2078810_2079716_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2079872_2080217_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2080374_2080833_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2080846_2083063_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2083059_2084121_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2084149_2085124_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2085075_2085894_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2085906_2086515_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2086689_2087085_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2087103_2088543_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2088571_2088919_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2088937_2089888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2090540_2091491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2091574_2093392_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2093465_2094113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2094125_2095055_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2095224_2095689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2095936_2096617_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2096665_2098357_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2098372_2098924_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2098920_2099292_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2099404_2100241_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2100251_2100776_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2100873_2101053_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2101182_2102157_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2102287_2102644_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2102633_2103509_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2103607_2104492_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2104513_2105809_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2106757_2107408_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2107495_2109016_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2109273_2111139_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2112184_2113135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2113152_2113293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2114107_2114467_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2114454_2115891_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2115887_2116541_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2116537_2117731_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2117834_2119109_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2119105_2120056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2131260	2171951	4109549	tRNA,protease,transposase	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2131260_2132211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2132309_2133260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2133219_2133633_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2133917_2134217_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2134626_2136909_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2137594_2139625_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2139644_2139857_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2140134_2140674_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2140787_2142083_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2142159_2143317_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2143500_2144400_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2144418_2145723_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2145688_2146795_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2146882_2147119_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2147257_2148328_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2148331_2149687_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2149713_2150871_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2150876_2151515_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2151516_2152812_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2152861_2154148_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2154163_2154670_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2154666_2155815_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2155842_2156268_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2156590_2159473_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2159565_2160321_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2161086_2162436_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2162534_2163485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2163583_2164534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2164607_2165081_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2165106_2166315_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2166311_2167085_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2167084_2167708_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2167873_2168134_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2168437_2169019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2169085_2169340_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2169326_2171951_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2199734	2313396	4109549	tRNA,protease,transposase	Lake_Baikal_phage(11.54%)	100	NA	NA
WP_010929577.1|2199734_2200685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2200885_2201695_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2201819_2202770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2202766_2203660_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2203784_2203979_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2203978_2204320_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2204329_2206192_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2206321_2206834_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2206836_2207160_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2207161_2207572_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2207609_2208821_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2208838_2209351_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2209566_2210058_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2210310_2212347_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2212424_2213627_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2213755_2214406_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2215963_2216914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2217484_2217697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2217714_2218446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2218480_2219122_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2219114_2219783_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2221995_2222772_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2222793_2223951_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2223947_2224379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2224375_2225173_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2225192_2225594_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2225660_2226632_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2226697_2227921_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2228148_2229099_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2229222_2231676_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2231864_2233169_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2233273_2233927_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2233929_2235240_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2235418_2235997_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2236108_2236309_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2236654_2237221_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2237304_2237508_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2237814_2238135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2238176_2238458_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2238532_2239789_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2240171_2240501_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2242071_2242893_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2242892_2244032_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2244038_2244935_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2244949_2246857_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2247216_2249829_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2249881_2252182_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2252178_2253387_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2253648_2254023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2254019_2254970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2255068_2257063_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2257122_2258088_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2258077_2260939_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2260941_2261448_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2261552_2262761_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2262762_2263701_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2263862_2264336_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2264332_2265283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2265393_2266344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2266442_2266883_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2267011_2268241_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2268279_2269101_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2269154_2270306_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2270397_2270886_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2273436_2275986_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2276056_2278630_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2278895_2279096_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2279127_2279289_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2279346_2279685_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2279833_2280784_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2280882_2281833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2282607_2283276_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2283257_2285213_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2285455_2286205_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2286217_2287081_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2287084_2288500_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2288633_2289362_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2289500_2289701_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2289876_2290275_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2290298_2291699_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2291817_2292570_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2292858_2293536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2293562_2294342_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2294338_2295223_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2295240_2296020_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2296004_2296763_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2296900_2297536_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2297803_2298820_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2298917_2299958_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2300092_2301385_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2302744_2303128_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2303145_2303733_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2303770_2304721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2304819_2305380_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2305376_2305922_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2306117_2307146_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2307186_2308527_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2308635_2309640_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2309746_2312347_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2312445_2313396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2352509	2416087	4109549	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2352509_2353460_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2353761_2354238_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2354861_2356499_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2356529_2357843_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2357976_2358294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2358394_2359717_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2359713_2360664_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2360762_2361713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2362242_2363265_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2363293_2364124_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2364140_2365838_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365902_2366979_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2367138_2368002_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368032_2368602_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2368618_2369470_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2370527_2371409_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2371483_2372473_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2372535_2373486_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2373548_2374406_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2374465_2374954_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2376526_2377717_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377713_2379300_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2379318_2380386_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2380490_2382035_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2382454_2384029_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2384145_2385153_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2385149_2385989_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385993_2387631_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387627_2388578_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2388595_2388739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2388720_2389995_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390024_2390315_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2390387_2391401_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2391420_2392683_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392685_2393609_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2393605_2395099_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395109_2396042_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2396223_2397549_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2397583_2398939_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398999_2400520_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400674_2401406_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2401503_2402814_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402829_2403741_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403731_2404325_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2404386_2404773_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404784_2405255_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2405266_2405890_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405910_2408658_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2415136_2416087_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2536235	2601956	4109549	tRNA,protease,transposase	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2536235_2538179_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2538175_2539096_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2539115_2539703_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2539695_2540586_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2540582_2541344_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2541349_2542234_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2542256_2544050_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2544180_2545668_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2545705_2546764_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2546763_2547264_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2547276_2547876_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2547872_2548373_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2548374_2549604_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2549793_2550033_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2550215_2550968_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2550969_2551905_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2551986_2552973_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2552972_2554031_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2554087_2554270_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2554321_2554915_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2555023_2555623_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2555619_2556330_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2556331_2557159_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2558975_2560217_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2560228_2561002_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2561028_2561979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2562077_2562860_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2562948_2564175_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2564900_2566286_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2566304_2566910_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2566906_2568763_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2568759_2569560_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2569574_2570768_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2570835_2571810_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2571932_2573156_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2573266_2575471_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2575765_2576425_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2576432_2576639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2576977_2577733_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2578003_2578519_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2578791_2579109_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2579296_2579533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2579823_2581179_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2581225_2582566_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2582667_2583300_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2583299_2585669_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2585701_2586661_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2586647_2587334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2587330_2587663_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2587778_2588729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2588827_2589778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2589774_2591841_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2591840_2592113_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2592807_2592897_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2592896_2594681_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2594704_2596870_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2596880_2597480_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2600301_2600997_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2601005_2601956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2688073	2728742	4109549	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688073_2689024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689134_2689317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689416_2690013_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690196_2691288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691787_2692198_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2692256_2692586_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2692603_2695021_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695033_2696056_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696130_2696490_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696505_2696703_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697038_2697989_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698183_2698633_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698629_2699580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699690_2701139_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2701253_2701499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701638_2702589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702833_2703547_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703669_2703897_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704191_2704830_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704938_2705973_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705969_2706920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707335_2707860_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707863_2708133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708331_2709393_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709476_2711111_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711112_2711916_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711944_2712904_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712907_2714422_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714458_2715463_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715894_2716365_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716400_2717012_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717042_2717666_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717746_2719279_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2719313_2720531_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720598_2721630_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721626_2722796_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2722789_2723470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2723631_2724474_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724636_2725608_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725779_2726658_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726680_2727751_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727791_2728742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2784207	2857077	4109549	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2784207_2784624_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784734_2785367_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785395_2785839_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785860_2786952_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2787006_2787807_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787942_2788563_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2788702_2789176_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790315_2791266_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791262_2798924_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799164_2803211_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803523_2804105_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804101_2805400_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805479_2806508_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806768_2807719_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807715_2808666_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808982_2809588_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2809641_2810955_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811029_2811500_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811499_2812288_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812298_2813951_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814038_2814989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2816150_2816657_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2816653_2817418_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2817433_2817718_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2817782_2818772_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2818943_2819873_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2819844_2820531_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2820564_2821110_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2821154_2822420_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2822416_2823319_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2824500_2825445_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2825539_2827057_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2827098_2828727_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2828834_2829716_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2832828_2833203_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2833227_2833566_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2833609_2835244_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2835282_2836629_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2836736_2838158_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2838227_2838812_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2838914_2839865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839999_2841106_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841116_2842214_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842358_2843564_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843570_2844092_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2844088_2844571_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844576_2844828_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844808_2845294_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845429_2848891_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848908_2849793_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849802_2850234_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850480_2850984_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851061_2852462_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852536_2853412_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853408_2854416_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854883_2855189_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855279_2855870_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856060_2857077_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2860220	2927031	4109549	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_023995489.1|2860220_2861171_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861269_2862220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862216_2863011_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863042_2863747_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863821_2864622_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864618_2865026_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865022_2865664_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865656_2867657_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868917_2870249_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870245_2871196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872901_2873168_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873875_2874214_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878768_2879371_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879467_2880757_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880814_2881546_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881542_2882346_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882342_2883431_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883427_2884357_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884505_2885651_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885672_2886623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2886640_2886799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2886953_2890775_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2890931_2891600_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2891604_2893278_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2893296_2894616_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2894620_2896936_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896991_2899160_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2899156_2904337_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904435_2904750_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904977_2905223_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905317_2905836_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905935_2907141_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907256_2908654_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908770_2909349_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909421_2910813_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910980_2911931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912211_2912832_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912828_2913242_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913238_2914282_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914337_2914526_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914535_2915300_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915390_2916047_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916138_2916897_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916922_2918524_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918724_2919729_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919829_2920093_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920210_2920987_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921577_2922528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924911_2926024_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2926080_2927031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	2957417	2996606	4109549	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2957417_2958368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2958385_2958535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2958488_2959385_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2961662_2963888_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2964052_2965141_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2965097_2965751_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2965798_2966596_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2967127_2968078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2968158_2969307_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969363_2970314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970412_2970718_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970746_2971181_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971182_2972427_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972423_2973134_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973148_2974060_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974422_2974827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974823_2975282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2975288_2976197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2976193_2977060_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977046_2977874_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977884_2979012_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980089_2981328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981369_2982632_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982638_2983391_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983442_2983628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983903_2984368_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984399_2985059_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985203_2987312_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987308_2988259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988362_2988983_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2989086_2989827_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990961_2992086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992131_2992500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992741_2993692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994727_2995270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995467_2995638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995655_2996606_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	3382103	3502348	4109549	tRNA,transposase	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3382103_3383054_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383458_3384103_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384127_3384712_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384812_3385430_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385432_3387148_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387144_3387453_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387469_3388087_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388131_3388434_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388534_3389389_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389576_3389801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389970_3390243_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390660_3391068_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391437_3392232_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392332_3393568_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393636_3394653_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394664_3396041_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396037_3397234_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397230_3398769_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398765_3400025_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401965_3402916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403682_3404777_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404769_3406104_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406057_3406741_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3406766_3407930_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3407926_3408928_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408927_3409800_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409796_3410546_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410542_3411334_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411330_3412470_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412745_3413531_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413564_3414347_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414350_3414740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415879_3416743_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416778_3417867_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417863_3418814_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419167_3422146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423072_3423951_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3424915_3425866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3426948_3427899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427895_3428363_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428405_3429176_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429196_3429997_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3430007_3431417_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431511_3432297_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432536_3433553_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433660_3434053_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434190_3434871_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434875_3435847_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435942_3436893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3438397_3439099_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3439098_3440523_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3441592_3442933_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3443048_3444812_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444923_3445802_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445914_3446730_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446733_3446985_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447069_3448086_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448416_3448638_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450998_3451916_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452413_3453622_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453701_3455273_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455390_3456326_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456514_3457459_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458026_3463744_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463749_3464877_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464932_3465559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465830_3466847_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466942_3467653_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467649_3468639_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468734_3470366_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470368_3471106_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471261_3472134_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472483_3473623_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473619_3474279_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474350_3474983_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3475012_3475531_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475541_3476651_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476697_3477552_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477553_3478456_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479678_3480629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482385_3483375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483550_3484339_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484335_3485367_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485385_3485949_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3486004_3487525_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487788_3488493_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488500_3489229_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489343_3489718_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489760_3491050_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491046_3492216_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492212_3493052_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493111_3494047_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494059_3495010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495108_3496071_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496102_3496462_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496586_3497489_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497490_3499263_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499297_3500074_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501397_3502348_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	3517286	3575359	4109549	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517286_3518237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518365_3519499_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519542_3520448_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520450_3522151_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522147_3523068_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523075_3524053_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524111_3525146_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527120_3527357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3527483_3528347_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528435_3529257_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529336_3530074_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530070_3531063_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3531215_3531839_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531883_3533032_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535355_3536306_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536646_3537597_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537695_3538646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538942_3539440_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539482_3541258_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541265_3542132_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542138_3542873_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544042_3544837_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545126_3545717_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545750_3547079_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547153_3548299_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548410_3549409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549371_3549806_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551322_3552207_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552203_3553409_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553405_3554266_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554378_3556169_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556209_3556854_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556875_3557184_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557349_3558636_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560069_3561020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562971_3564186_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564291_3565281_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565277_3565886_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565898_3566528_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566524_3567145_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567176_3567968_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568819_3569275_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569293_3570220_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570273_3571560_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572490_3573363_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573359_3574310_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574408_3575359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011715	Bordetella pertussis strain I069 chromosome, complete genome	4109549	4008617	4073529	4109549	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4008617_4009103_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009191_4009329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009321_4010302_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010568_4011378_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011417_4012098_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012091_4012550_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012561_4012924_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013006_4013690_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013745_4014054_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014072_4014387_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014383_4016858_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016865_4018257_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018253_4018439_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018417_4019119_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019115_4019937_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019917_4021042_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021034_4022054_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022259_4023150_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023394_4024186_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024268_4024643_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024620_4026030_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026022_4027405_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027739_4029344_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029421_4030393_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030403_4031330_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4031720_4032671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032840_4034067_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034266_4035133_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035125_4036088_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036188_4037139_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037237_4038188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038286_4039237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039233_4040727_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040723_4043831_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043827_4046896_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046892_4048143_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048323_4049076_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049117_4049762_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049770_4050751_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050850_4051594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051676_4052024_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052121_4052964_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053008_4053896_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053922_4054111_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054208_4055666_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055652_4057179_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057197_4057665_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057664_4058687_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058807_4059548_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059602_4060703_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060704_4061895_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062014_4063031_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063349_4064021_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064017_4064926_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065137_4065785_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069645_4070713_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070723_4071533_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071622_4072396_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4072396_4072561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4072578_4073529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
