The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	27282	70036	4106500	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	232665	307009	4106500	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232665_233616_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233612_234803_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234924_235689_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|235775_236879_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237070_238087_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238368_238857_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240200_240881_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240942_241794_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241790_242588_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242691_243585_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243596_245486_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245822_249596_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249592_250543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250851_251544_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251917_252418_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|252524_253445_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253461_253938_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254031_255882_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255937_256696_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256723_258157_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258230_259010_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259022_259856_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259864_260635_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260634_261699_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261850_264478_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264541_267163_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268090_268549_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268827_271071_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271267_273292_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273415_274378_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274589_275729_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275751_276717_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276912_278103_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278116_278362_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278390_280412_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280458_282066_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282166_283336_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286217_287168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287191_288250_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288324_288699_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289253_290204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291760_292606_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292693_293857_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294275_295247_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295285_296713_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296832_297624_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297742_300196_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300290_301400_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301402_302812_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303217_303352_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303447_303819_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303815_304088_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304136_305828_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306058_307009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	489373	607268	4106500	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521654_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|546690_547353_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589291_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|594999_595158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597900_598851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602998_603517_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604906_606127_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	611682	675515	4106500	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611682_612699_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612970_613597_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|613652_614780_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614785_620503_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626613_627531_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629891_630113_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630443_631460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633717_635481_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638006_639431_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639430_640132_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641636_642587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642682_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643658_644339_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644476_644869_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644976_645993_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646232_647018_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647112_648522_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649353_650124_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650630_651581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658666_659617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659613_660702_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660737_661601_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|662740_663130_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|663133_663916_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663949_664735_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665010_666150_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666146_666938_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669550_670714_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|670739_671423_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671376_672711_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674564_675515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	694426	771735	4106500	protease,integrase,transposase,tRNA	Bacillus_phage(20.0%)	57	741563:741581	761451:761469
WP_023995489.1|694426_695377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695475_696951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708239_708677_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708800_709469_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710197_711301_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|711403_712681_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713719_715090_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719313_720468_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720464_721595_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726971_727682_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727678_729001_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729080_731042_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738034_738862_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740743_741343_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749797_752917_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752918_755870_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755885_757097_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|757280_758231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758247_758742_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759546_760458_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761607_762558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762976_765541_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765585_767439_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|767771_769343_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770784_771735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1018718	1120062	4106500	transposase,tRNA	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1018718_1019834_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1019934_1020753_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1020850_1021462_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1021621_1022998_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1023060_1023519_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1023603_1024299_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1024360_1024642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1025204_1025957_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1026001_1027078_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1027074_1028025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028127_1028790_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028884_1029055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029407_1030409_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030411_1031608_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031628_1032432_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1032512_1032809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032839_1033403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033443_1034301_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034308_1035058_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035079_1035952_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035980_1036760_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036793_1037591_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1040245_1040638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040631_1041492_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041495_1042458_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043234_1043924_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044784_1045735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046084_1046954_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047024_1047720_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047709_1048219_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048215_1049436_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049383_1050286_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051172_1052459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052497_1053871_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053909_1054611_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054909_1055899_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055999_1056461_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056476_1057025_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1057166_1058642_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058747_1059839_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059842_1060625_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060634_1061423_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062548_1062983_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062979_1063990_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064033_1064960_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065246_1065615_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1065831_1066782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1066826_1069253_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1069301_1069994_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070066_1071266_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071283_1072189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072304_1073234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073259_1074606_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1074633_1075383_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1075396_1076179_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076371_1077322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1077383_1078493_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1079005_1079842_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1079911_1080877_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080873_1081824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1082209_1082752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083787_1084738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1084979_1085348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1085393_1086518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1087652_1088405_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1088496_1089117_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1089220_1090171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090167_1092276_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092420_1093080_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093111_1093576_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093851_1094037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094088_1094841_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094847_1096110_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096151_1097390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098467_1099595_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099605_1100433_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100419_1101286_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102652_1103057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103419_1104331_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104345_1105056_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105052_1106297_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106298_1106733_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106761_1107067_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1107165_1108116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1108172_1109327_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109401_1110352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110883_1111681_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111728_1112382_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112338_1113427_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113591_1115817_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118094_1118991_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1119111_1120062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1150448	1221419	4106500	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1150448_1151399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1151455_1152568_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1154951_1155902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156492_1157269_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157386_1157650_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157750_1158755_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158955_1160557_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160582_1161341_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161432_1162089_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162179_1162944_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162953_1163142_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163197_1164241_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164237_1164651_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164647_1165268_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165548_1166499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166666_1168058_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168130_1168709_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168825_1170223_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170338_1171544_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171643_1172162_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172256_1172502_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172729_1173044_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1173133_1178323_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178319_1180488_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1180543_1182859_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1182863_1184183_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184201_1185875_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185879_1186548_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186704_1190526_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1190856_1191807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191828_1192974_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193122_1194052_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194048_1195137_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195133_1195937_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195933_1196665_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196722_1198012_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198108_1198711_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203264_1203603_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204310_1204577_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206283_1207234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207230_1208562_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1209822_1211823_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211815_1212457_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212453_1212861_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212857_1213658_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213732_1214437_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214468_1215263_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215259_1216210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216308_1217259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217357_1217792_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217874_1220211_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220402_1221419_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1268813	1349688	4106500	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1268813_1269764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1269760_1270711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1270971_1272000_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1272079_1273378_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1273374_1273956_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1274268_1278315_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1278555_1286217_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1286213_1287164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1288303_1288777_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1288916_1289537_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1289672_1290473_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1290527_1291619_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1291640_1292084_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1292112_1292745_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1292855_1293272_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1293264_1293957_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1294063_1294438_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1294514_1295324_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1295419_1296364_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1296402_1297374_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1297464_1297902_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1297960_1298842_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1299845_1300706_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1300738_1302121_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1302117_1303137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1303509_1304004_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1304011_1304752_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1304832_1306437_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1306476_1307265_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1308467_1309556_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1310436_1311249_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1311261_1311570_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1311687_1313418_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1313419_1314565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1314694_1315363_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1315484_1315952_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1316087_1317470_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1317466_1318591_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1318587_1321224_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1321639_1322590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1326336_1326948_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1327170_1328631_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1328727_1330320_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1330673_1330931_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1330932_1332273_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1332368_1333058_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1333070_1334501_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1336225_1337047_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1337057_1338629_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1338657_1339635_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1339661_1340465_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1340461_1341256_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1341263_1342499_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1342491_1342926_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1343675_1344626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345247_1346975_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347086_1348445_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1348737_1349688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1469079	1521232	4106500	transposase,tRNA	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1469079_1470030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1470196_1470550_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470562_1470925_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470966_1471392_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471594_1472851_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1473049_1474030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1474179_1475421_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1475519_1476470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1476478_1477174_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479995_1480595_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480605_1482771_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482794_1484579_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484578_1484668_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1485362_1485635_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485634_1487701_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1487697_1488648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1488746_1489697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1489812_1490145_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1490141_1490828_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1490814_1491774_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1491815_1494176_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1494175_1494808_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1494909_1496250_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1496296_1497652_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1497777_1498422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1498366_1498684_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1498956_1499472_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1499565_1499727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1499742_1500498_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1500836_1501043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1501050_1501710_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1502004_1504209_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1504319_1505543_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1505665_1506640_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1506707_1507901_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1507915_1508716_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1508712_1510569_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1510565_1511171_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1511189_1512575_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1513300_1514527_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1514615_1515398_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1515496_1516447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1516473_1517247_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1517258_1518500_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1520281_1521232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1565157	1633243	4106500	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1565157_1565646_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1565763_1566342_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1566447_1566816_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1566914_1567865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1567871_1568984_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1569670_1570873_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1570908_1571055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1571076_1573737_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1573749_1577154_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1577821_1580047_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1580093_1580420_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1580470_1581079_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1581177_1582128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1582197_1582962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1582958_1583558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1583661_1584513_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1584572_1585199_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585195_1586146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1586244_1587357_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1587346_1588348_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1588453_1589965_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1589961_1591266_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1591377_1591938_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1592205_1592760_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1593215_1593431_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1593685_1596283_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1596279_1597467_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1598125_1598740_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1598828_1599956_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1599967_1600873_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1601765_1602716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1602897_1603650_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1603718_1604378_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1604374_1605103_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1605115_1607395_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1607419_1607623_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1607664_1608297_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1608432_1609350_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1609346_1610060_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1610297_1611068_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1611072_1611672_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1611916_1613407_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1613465_1613750_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1613887_1614043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1614315_1615242_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1615378_1616119_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1616285_1617662_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1617843_1618749_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1620400_1622203_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1622329_1622971_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1623069_1624020_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1624041_1625262_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1625447_1626860_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1626923_1627991_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1627990_1629478_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1629487_1630432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1630591_1631290_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1631367_1632273_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1632292_1633243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1669192	1724783	4106500	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1669192_1670143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1670201_1670975_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1670967_1672524_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1672520_1673471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1674797_1675400_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1675639_1676341_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1676334_1677117_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1677301_1678252_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1678350_1679088_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1679277_1680036_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1680082_1681072_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1681249_1682218_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1683757_1684726_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1684734_1685676_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1686149_1687160_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1687150_1688665_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1688661_1690008_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1690010_1691045_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1691094_1692720_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1693272_1694223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1694327_1695275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1695328_1697143_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1697135_1697810_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1697939_1701014_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1701027_1701327_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1701641_1702265_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1702508_1703378_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1703355_1704300_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1704385_1705312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1705424_1706204_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1706194_1707391_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1707421_1708372_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1708593_1709283_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1709347_1710103_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1710154_1711147_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1711156_1712110_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1712225_1713188_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1714589_1715018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1715014_1715965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1716258_1716996_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1717419_1718607_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1718610_1718991_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1720710_1721682_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1721695_1722409_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1722413_1723331_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1723437_1723734_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1723832_1724783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1746441	1838412	4106500	transposase,tRNA	Moraxella_phage(25.0%)	60	NA	NA
WP_005012067.1|1746441_1747392_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905945.1|1747490_1748441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1748464_1748929_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1749075_1750284_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1750327_1750765_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1750883_1752173_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1754913_1755864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1755962_1756979_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1757157_1758192_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1758188_1758815_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1758811_1759864_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1759913_1760684_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1760734_1761571_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1761766_1762507_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1762581_1763325_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1764001_1764760_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1765897_1767187_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1768797_1770045_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1770054_1771764_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1771760_1772699_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1772695_1773979_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1773982_1774465_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1774465_1775452_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1775624_1776344_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1776460_1777411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1780596_1781946_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1782003_1782798_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1782931_1783807_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1783850_1787567_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1787575_1788205_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_010930610.1|1788631_1799404_+	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930611.1|1800166_1800901_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1800963_1803585_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1803565_1804696_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1804688_1806443_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1807760_1808261_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1808267_1809242_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1810798_1811290_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1811303_1812269_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_019247163.1|1812289_1812991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1814165_1814678_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1814756_1818380_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930622.1|1818393_1819425_-	C45 family peptidase	NA	NA	NA	NA	NA
WP_003809983.1|1820584_1821418_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1821431_1822190_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1822351_1823344_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1823561_1824338_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1824445_1825228_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1825354_1826941_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1826965_1827829_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1828036_1828813_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1828805_1829315_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010930629.1|1829443_1830127_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1830366_1831827_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1831846_1832491_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1832527_1833493_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1833591_1834542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1834671_1835637_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1835736_1837002_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1837395_1838412_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	1958597	2028249	4106500	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1958597_1961255_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1961332_1962535_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1962531_1963044_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1963166_1963604_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1963880_1964831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1964929_1965880_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1966133_1967939_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1968052_1968220_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1968283_1968520_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1968888_1970088_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1971603_1972554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1973005_1974007_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1974179_1975037_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1975033_1976296_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1976396_1976771_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1976843_1978031_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1978115_1978886_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1978999_1979764_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1979714_1981016_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1981012_1981819_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1983563_1984535_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1984691_1985204_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1985362_1986337_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1987337_1988132_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1988157_1988964_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1989074_1989665_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1989675_1990854_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1990956_1991331_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1991583_1992915_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1992981_1996212_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1997702_1998449_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1998533_1998995_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1999032_2000091_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2000053_2001883_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2001922_2002495_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2003919_2004741_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2005059_2006382_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2006741_2007377_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2007336_2008287_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2009157_2010030_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2010107_2011247_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2011605_2012862_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2012867_2013395_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2013399_2014218_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2014217_2014940_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2014961_2015276_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2015293_2016442_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2016472_2017348_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2017344_2018664_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2018736_2019933_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2019943_2021431_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2024025_2024925_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2025062_2026028_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2026126_2027077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2027298_2028249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2039745	2089141	4106500	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2039745_2040696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2041833_2042130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2042304_2043657_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2043799_2044816_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2046795_2047809_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2047895_2048801_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2048957_2049302_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2049459_2049918_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2049931_2052148_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2052144_2053206_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2053234_2054209_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2054160_2054979_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2054991_2055600_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2055774_2056170_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2056188_2057628_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2057656_2058004_+	GFA family protein	NA	NA	NA	NA	NA
WP_077069038.1|2058022_2058973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2059625_2060576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2060659_2062477_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2062550_2063198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2063210_2064140_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2064309_2064774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2065021_2065702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2065750_2067442_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2067457_2068009_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2068005_2068377_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2068489_2069326_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2069336_2069861_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2069958_2070138_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2070267_2071242_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2071372_2071729_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2071718_2072594_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2072692_2073577_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2073598_2074894_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2075842_2076493_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2076580_2078101_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2078358_2080224_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2081269_2082220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2082237_2082378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2083192_2083552_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2083539_2084976_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2084972_2085626_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2085622_2086816_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2086919_2088194_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2088190_2089141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2100345	2141036	4106500	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2100345_2101296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2101394_2102345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2102304_2102718_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2103002_2103302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2103711_2105994_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2106459_2106654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2106679_2108710_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2108729_2108942_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2109219_2109759_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2109872_2111168_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2111244_2112402_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2112585_2113485_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2113503_2114808_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2114773_2115880_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2115967_2116204_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2116342_2117413_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2117416_2118772_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2118798_2119959_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2119961_2120600_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2120601_2121888_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2121946_2123242_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2123248_2123755_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2123751_2124900_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2124927_2125353_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2125675_2128558_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2128650_2129406_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2130171_2131521_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2131619_2132570_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2132668_2133619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2133692_2134166_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2134191_2135400_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2135396_2136170_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2136169_2136793_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2136958_2137219_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2137522_2138104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2138170_2138425_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2138411_2141036_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2168819	2234368	4106500	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2168819_2169770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2169970_2170780_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2170904_2171855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2171851_2172745_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2172869_2173064_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2173063_2173405_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2173414_2175277_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2175406_2175919_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2175921_2176245_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2176246_2176657_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2176694_2177906_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2177923_2178436_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2178651_2179143_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2179395_2181432_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2181509_2182712_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2182840_2183491_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2185048_2185999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2186569_2186782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2186799_2187531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2187565_2188207_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2188199_2188868_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2191080_2191857_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2191878_2193036_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2193032_2193464_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2193460_2194264_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2194277_2194679_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2194745_2195717_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2195782_2197006_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2197233_2198184_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2198307_2200761_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2200949_2202254_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2202358_2203012_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2203014_2204325_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2204521_2205082_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2205193_2205394_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2205739_2206306_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2206389_2206593_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2206899_2207220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2207261_2207543_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2207617_2208874_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2209256_2209586_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2211156_2211978_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2211977_2213117_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2213123_2214020_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2214016_2215942_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2216301_2218914_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2218966_2221267_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2221263_2222472_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2222733_2223108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2223104_2224055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2224153_2226148_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2226207_2227173_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2227162_2230024_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2230026_2230533_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2230637_2231846_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2231847_2232786_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2232947_2233421_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2233417_2234368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2320545	2384123	4106500	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2320545_2321496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2321797_2322274_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2322897_2324535_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2324565_2325879_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2326012_2326330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2326430_2327753_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2327749_2328700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2328798_2329749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2330278_2331301_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2331329_2332160_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2332176_2333874_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2333938_2335015_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2335174_2336038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2336068_2336638_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2336654_2337506_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2338563_2339445_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2339519_2340509_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2340571_2341522_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2341584_2342442_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2342501_2342990_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2344562_2345753_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2345749_2347336_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2347354_2348422_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2348526_2350071_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2350490_2352065_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2352172_2353189_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2353185_2354025_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2354029_2355667_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2355663_2356614_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2356756_2358031_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2358060_2358351_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2358423_2359437_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2359456_2360719_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2360721_2361645_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2361641_2363135_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2363145_2364078_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2364259_2365585_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2365619_2366963_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2367035_2368556_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2368710_2369442_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2369509_2370850_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2370865_2371777_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2371767_2372361_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2372422_2372809_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2372820_2373291_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2373302_2373926_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2373946_2376694_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2383172_2384123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2529064	2587308	4106500	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2529064_2530015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2530494_2531151_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2531165_2532833_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2532835_2533465_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2533676_2534771_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2534915_2535728_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2535731_2537435_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2537485_2538616_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2538802_2539879_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2539960_2540611_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2540625_2542029_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2542312_2543131_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2543127_2543832_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2544731_2545847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2545880_2546255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2546277_2547435_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2547447_2547681_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2548315_2551285_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2551299_2551509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2551660_2552290_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2552286_2554377_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2554400_2555081_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2555077_2555638_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2555644_2556742_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2556894_2557488_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2557484_2558777_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2558790_2559333_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2559342_2560179_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2560212_2561274_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2561315_2562368_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2562383_2562686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2562827_2563778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2563956_2565651_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2565647_2566733_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2566780_2567680_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2567690_2568335_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2569356_2572599_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2572609_2573764_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2573990_2574953_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2575051_2576002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2576100_2577051_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2577060_2577750_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2577809_2578247_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2578292_2579186_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2579233_2580406_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2580402_2581557_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2581753_2582104_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2582093_2582528_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2582544_2583495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2583642_2584110_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2584090_2585248_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2585313_2586240_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2586357_2587308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2629588	2696088	4106500	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629588_2630539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630908_2631481_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2631483_2632494_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2632486_2632987_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632997_2633339_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2633350_2634142_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2634158_2634428_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2634450_2635239_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2635285_2636302_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2636518_2637961_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2638139_2639759_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639879_2641700_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641778_2643311_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2643344_2644991_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2645060_2646083_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2646100_2647234_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2647236_2647926_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647925_2648711_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648754_2649519_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649557_2650979_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2651044_2651749_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651796_2652216_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2652228_2652636_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652819_2653530_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653656_2653947_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653964_2654447_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658952_2660107_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2660412_2661429_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661675_2662464_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2662530_2663211_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2663207_2663978_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2664076_2665027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2665082_2666000_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2666010_2667189_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2667208_2668204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669792_2670401_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2670388_2671429_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2671446_2672409_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2672405_2673599_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673595_2674393_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2674418_2675405_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2675423_2677463_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2677664_2678345_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2678358_2679270_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2679266_2679845_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679983_2680889_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680896_2684316_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2684303_2686904_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687859_2688492_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688885_2689644_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2689640_2690843_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2691030_2691981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692888_2694034_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2694020_2694776_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694892_2695072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2695137_2696088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2894427	2967752	4106500	transposase,protease,tRNA	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2894427_2895783_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2897261_2897984_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2898038_2899022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2899151_2900102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2900098_2901001_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2901088_2901847_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901859_2902951_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2903048_2904476_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904705_2905920_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905965_2908836_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2911246_2911735_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911860_2914557_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914711_2916994_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2917167_2917791_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2917889_2918840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918886_2919441_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2919508_2920354_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2920423_2921392_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2921391_2922255_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2925087_2929014_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929749_2932980_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2933261_2934089_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2934122_2934818_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934810_2936091_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2936100_2937078_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2937059_2938760_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938862_2939966_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939996_2940752_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940758_2942279_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2942321_2942624_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942620_2943253_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2943331_2945197_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2945193_2945988_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2946016_2947132_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2948036_2948915_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948914_2949739_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949906_2950857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2951069_2953919_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953900_2954629_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954769_2956233_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2956229_2956601_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956618_2957932_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957968_2958427_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2958539_2959490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2959486_2960500_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960639_2961626_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961984_2962692_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2963272_2964223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2964374_2964977_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964995_2965628_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965672_2965924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965865_2967752_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	2979477	3029197	4106500	holin,transposase,tRNA	uncultured_Mediterranean_phage(60.0%)	43	NA	NA
WP_005013747.1|2979477_2980428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2980454_2980919_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2982125_2984414_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2984530_2985403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2985445_2986600_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986634_2987465_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987548_2989093_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2989135_2989495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2989496_2989910_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989950_2990268_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2990352_2991069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2991332_2992754_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2995426_2996377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2996356_2996611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996949_2997966_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2998301_2998943_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2999033_3000470_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000627_3001701_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001697_3002834_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002978_3003323_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3003389_3005270_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3005319_3006255_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006587_3007604_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3008541_3009969_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009965_3010988_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010977_3011451_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011591_3012479_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3012475_3014119_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3014115_3015165_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015953_3016970_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3017069_3017702_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017710_3018100_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3018152_3019205_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3020068_3020833_-	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_003811919.1|3020906_3021407_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3021421_3023479_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3023505_3023799_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023900_3024848_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024860_3025736_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025856_3026417_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3026451_3026775_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3027210_3027948_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3028246_3029197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3037407	3099562	4106500	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3037407_3038541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3038644_3039286_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3039440_3041789_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3041785_3042724_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3042749_3043940_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3043936_3044710_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3044739_3045933_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3046050_3047061_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3047078_3049115_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3049309_3050050_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3050148_3051099_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3051197_3052148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3052190_3053366_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053587_3055378_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3055390_3057052_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057064_3059770_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060062_3061817_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061813_3062440_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3062436_3063288_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3063363_3065478_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065664_3066279_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3066424_3066676_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066745_3068128_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3068124_3071304_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3072111_3073029_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3073080_3073812_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073871_3074444_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075952_3076969_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3077106_3078156_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3078260_3079211_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3079306_3080032_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3080242_3080623_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080928_3081801_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081808_3082189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3082342_3083617_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3085104_3086013_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086810_3087875_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3089711_3090713_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090935_3091577_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091659_3093486_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093729_3094659_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094658_3095408_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3095479_3096394_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3096413_3097559_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097619_3098531_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098611_3099562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3118984	3174114	4106500	transposase	Bacillus_phage(28.57%)	48	NA	NA
WP_005012808.1|3118984_3119935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120064_3120457_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120733_3121645_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121769_3122744_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122740_3123691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123789_3124875_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124972_3125383_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3125998_3127912_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3128047_3130660_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130661_3131396_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131559_3132741_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132737_3132950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132946_3133927_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133972_3134800_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134949_3136764_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136818_3137202_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3137198_3138149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3138261_3138513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139018_3140137_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3140256_3140469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140628_3140850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140902_3141853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143029_3144400_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3144432_3145224_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3145236_3146292_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3146317_3147193_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3147298_3147547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147581_3149036_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149032_3149554_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149582_3150935_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3151158_3154047_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3156191_3157493_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3157507_3158224_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3158505_3159186_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3159197_3159365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3159473_3159620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3159713_3160373_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160771_3162604_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162600_3163551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164714_3166430_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3166440_3166932_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3167004_3168021_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3168188_3168968_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168986_3169514_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3169807_3170077_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3170167_3172327_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3172447_3173167_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3173163_3174114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3189699	3261712	4106500	holin,transposase	Leptospira_phage(20.0%)	60	NA	NA
WP_023994644.1|3189699_3190716_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3190912_3191737_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3191814_3192738_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3192908_3194060_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3194063_3195095_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|3195223_3196195_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3196219_3198304_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3198370_3199363_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3199471_3200806_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3200831_3202844_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3202840_3204889_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3204992_3205640_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3205780_3206275_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3206318_3206990_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3207004_3208498_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3208494_3211608_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3211620_3212727_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3212850_3213519_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3213739_3214690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3214772_3216731_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3216758_3217460_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3217606_3218422_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3218418_3219234_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3219250_3220054_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3220037_3220472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3220468_3220903_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3220904_3221459_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3221476_3222427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3222739_3223897_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3224085_3224445_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3224481_3224958_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3225032_3225656_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3225658_3226915_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3226960_3227455_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3227451_3228819_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3228834_3231162_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3231161_3232235_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3232256_3232745_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3232762_3233410_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3233406_3233715_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3233732_3235745_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3235741_3237244_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_019248505.1|3237254_3238739_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3238755_3239085_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_010930039.1|3239385_3241617_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3241828_3244099_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3244211_3244730_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3244739_3245516_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3245512_3247303_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3247362_3248343_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3248480_3249398_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3249526_3250387_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3250422_3253878_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3253907_3254591_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3254587_3255076_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_041337087.1|3255174_3256125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3256121_3257141_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3257150_3259859_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3260006_3260663_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260761_3261712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3313305	3356212	4106500	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3313305_3314256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3314357_3314786_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3314858_3317054_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317275_3318226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3318185_3318710_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318841_3319813_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319932_3322377_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3322392_3322983_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3323226_3324177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3324334_3325600_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3325633_3326731_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3327385_3328336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3328336_3328906_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3328973_3329789_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3329955_3331575_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3331653_3332595_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3332594_3333479_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3333482_3335135_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3335174_3336572_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3336613_3337993_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3338032_3338251_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3338591_3339464_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3339623_3340574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3341305_3341683_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341667_3342369_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3342512_3343205_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3343204_3344308_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3344417_3346790_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346786_3348346_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3348370_3349168_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3349199_3350345_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3350449_3351892_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351894_3353124_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3355261_3356212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3365504	3398187	4106500	terminase,transposase,tail,tRNA	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3365504_3367235_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3367300_3367873_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367853_3368540_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368895_3369567_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369895_3370117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3370116_3370398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3370394_3370910_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370909_3371461_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3371439_3371682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371686_3372499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3372498_3372762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372802_3373000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372980_3373397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3373401_3377358_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3377350_3377740_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377736_3378270_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3378337_3378697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378706_3381319_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3381344_3381635_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381652_3381982_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381991_3382510_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382764_3383265_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3383272_3383695_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383691_3384090_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3384086_3384482_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3384481_3384682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384683_3385166_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3385228_3385480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3386154_3387105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3387533_3388136_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3388258_3388501_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3388506_3389562_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389590_3391009_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391011_3392289_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3392275_3392761_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3393400_3394351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3394607_3395297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3395289_3395541_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3396095_3396707_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396778_3396985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3397236_3398187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3409406	3455725	4106500	protease,transposase,tRNA	Bacillus_phage(40.0%)	44	NA	NA
WP_010930800.1|3409406_3410357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3410433_3412254_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3412258_3413332_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3413454_3414423_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3414496_3415408_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3415426_3415999_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3416079_3416628_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416627_3418217_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3418286_3418526_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418566_3419592_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419657_3420839_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420935_3421388_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3421397_3422738_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3423054_3424092_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3424473_3424833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424916_3425858_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425932_3426883_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3427176_3428271_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3428352_3429234_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3429255_3430095_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3430170_3431688_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431784_3432885_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432901_3433324_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3433346_3433559_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433605_3434526_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434708_3435458_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3435460_3435790_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3435996_3437430_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3437441_3437825_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437886_3438687_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438785_3439736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|3439791_3440604_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|3440762_3441611_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|3441811_3446206_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|3446299_3447277_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|3447663_3448242_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|3448389_3449439_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|3449479_3450214_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|3451008_3451590_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814158.1|3451586_3452480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|3452613_3453015_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|3453032_3453635_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3453692_3454076_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3454774_3455725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3600404	3655378	4106500	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3600404_3601355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601471_3602539_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602614_3605743_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606250_3607216_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607218_3607890_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608046_3609006_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609013_3609676_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609672_3610623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610744_3611998_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611975_3612938_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3613069_3613564_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613563_3614796_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3615541_3615823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615809_3616796_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616939_3617344_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3617485_3620872_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620902_3622366_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3622386_3624003_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3624088_3624748_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624777_3625218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625728_3625932_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3626107_3627013_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3627111_3628062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3628160_3629111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630892_3632086_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3632151_3633180_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3633206_3634379_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3634504_3635482_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3635492_3636464_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3636530_3637316_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3637308_3638541_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638736_3639492_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639602_3640121_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641909_3643310_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3643409_3643754_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643842_3644313_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644723_3645122_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3645253_3646204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648648_3649383_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649792_3649972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3650162_3651476_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3651491_3653003_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3652999_3654205_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3654400_3655378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3745191	3799386	4106500	protease,transposase	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
WP_005013747.1|3745191_3746142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3746264_3746993_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3747089_3748268_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3748264_3749098_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3749134_3749875_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749994_3751170_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3751166_3752120_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3752133_3752535_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3752527_3753133_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3753220_3753385_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3753501_3754350_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3754346_3755000_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3755016_3756300_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3756539_3758165_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3758258_3758660_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758684_3759119_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3759120_3760770_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760810_3761980_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3761982_3762846_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3766209_3766914_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766907_3767702_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767698_3768664_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768667_3769588_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769684_3770848_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3771070_3771961_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771964_3772468_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3772510_3773509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3773505_3774456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3774544_3774832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3775023_3775974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3776033_3776594_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3778096_3778978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3779091_3780294_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3780422_3782282_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3782359_3783169_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3783239_3784241_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3784272_3785133_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3785332_3786337_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3786333_3787920_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787928_3788855_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788877_3789504_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3789602_3790553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790549_3791686_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791739_3792516_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3792540_3792999_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3793138_3793780_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793844_3795227_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3795246_3796101_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3796259_3796871_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3796880_3797330_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3797848_3797989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3797996_3798158_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3798435_3799386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	3810002	3870891	4106500	protease,transposase,tRNA	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3810002_3810953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811683_3812664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812677_3813802_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813809_3815564_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815670_3816570_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816634_3817618_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817753_3818734_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818750_3820142_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820293_3820830_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820760_3822146_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822288_3822927_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3823013_3824903_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824899_3825841_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825946_3826996_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827248_3827950_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827946_3828645_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828645_3830001_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3829997_3830489_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830507_3831464_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832874_3834977_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835147_3836191_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836234_3836978_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3837999_3838410_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3839359_3840157_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840255_3841206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841202_3842153_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842239_3843190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843304_3844306_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844396_3844963_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845281_3847195_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847236_3848667_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848779_3850192_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850208_3850904_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851122_3852073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852097_3852997_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853151_3853700_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853738_3854458_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3854529_3857472_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3858065_3860861_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3861318_3862251_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3862362_3863712_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3863743_3864469_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3864519_3865371_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3865500_3866187_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3866186_3866831_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3866887_3867163_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3867188_3867485_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3867530_3868310_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3868315_3869356_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3869460_3869784_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3869940_3870891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011709	Bordetella pertussis strain H864 chromosome, complete genome	4106500	4028671	4082103	4106500	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4028671_4029622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029791_4031018_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031217_4032084_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032076_4033039_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033139_4034090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034188_4035139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035237_4036188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036184_4037678_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037674_4040782_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040778_4043847_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043843_4045094_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045274_4046036_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4046068_4046719_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046721_4047561_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047801_4048545_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048627_4048975_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049072_4049915_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049959_4050847_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050873_4051062_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051159_4052617_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052603_4054130_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054148_4054616_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054615_4055638_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055758_4056478_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056553_4057654_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057655_4058846_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058965_4059982_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060300_4060972_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060968_4061877_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062088_4062736_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066587_4067664_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067674_4068484_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068573_4069347_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069529_4070480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070368_4071391_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071380_4072535_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072574_4073987_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074111_4074978_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074979_4075804_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075800_4076562_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076642_4077329_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077502_4078510_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078506_4079286_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079343_4080606_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081152_4082103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
