The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	27282	70036	4109537	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	77634	136108	4109537	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	164892	225403	4109537	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189529_189976_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193100_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211223_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219053_221897_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	233335	286923	4109537	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267753_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278076_278292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280424_281273_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	390856	448365	4109537	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	590419	651609	4109537	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591845_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593752_594244_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594262_595336_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595382_596486_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596561_597182_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597202_597712_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597766_598018_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598081_599215_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599222_599609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599605_602125_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602553_602892_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602888_603395_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603456_604257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604367_605309_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605402_606938_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608617_610468_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610471_611305_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611304_612246_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612497_613469_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613610_615899_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616205_617114_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617168_618134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618208_619870_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619941_620652_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620800_621751_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622449_622833_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622890_623493_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623510_623912_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624027_624939_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624935_625517_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626311_627046_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627086_628136_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628283_628862_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629248_630226_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630319_634714_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634914_635763_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635921_636734_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636789_637740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637838_638639_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638700_639084_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639095_640448_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640735_641065_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641067_641817_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|641999_642920_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642966_643179_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643201_643624_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643640_644741_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644837_646355_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646430_647270_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647291_648164_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648254_649349_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649642_650593_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650667_651609_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	656933	703124	4109537	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656933_657959_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|657999_658239_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658308_659898_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659897_660446_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660526_661099_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661117_662029_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662102_663071_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663193_664267_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664271_666092_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666168_667119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667207_667543_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667676_668327_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668348_669767_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669836_670592_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670560_671319_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671329_672211_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672227_672935_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672937_673696_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673905_675648_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675640_676165_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676204_676999_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677166_678240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678338_679289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679540_679747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679818_680430_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680984_681236_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681228_681918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682174_683125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683764_684250_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684236_685514_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685516_686935_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686963_688019_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688024_688267_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688389_688992_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689420_690371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691045_691297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691359_691842_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691855_692044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692043_692439_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692435_692834_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692830_693253_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693260_693761_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694015_694534_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694543_694873_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694890_695181_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695206_697819_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697828_698188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698255_698789_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698785_699175_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699167_703124_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	709290	763220	4109537	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709290_711021_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711073_711502_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711504_712185_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712184_712643_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712679_713654_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713670_714987_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720313_721264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723401_724631_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724633_726076_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726180_727326_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727357_728155_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728179_729739_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729735_732108_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732217_733321_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733320_734013_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734156_734858_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734842_735220_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735951_736902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737061_737934_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738274_738493_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738532_739912_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739953_741351_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741390_743043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743046_743931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743930_744872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744950_746570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746736_747552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747619_748189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748189_749140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750925_752191_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	885809	953785	4109537	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902411_903362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913921_915754_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939761_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	997314	1069831	4109537	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997314_998265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998369_999419_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999556_1000573_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002081_1002654_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002713_1003445_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003496_1004414_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005221_1008401_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_077100542.1|1008397_1009780_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009849_1010101_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010246_1010861_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011047_1013108_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013237_1014089_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014085_1014712_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014708_1016463_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016755_1019461_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019473_1021135_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021147_1022938_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023159_1024335_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024377_1025328_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025426_1026167_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026361_1028398_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028415_1029426_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029543_1030737_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030766_1031540_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031536_1032727_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032752_1033691_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033687_1036036_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036190_1036832_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038161_1038314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038345_1038894_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038912_1039398_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039575_1040514_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040516_1040834_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040879_1041824_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043504_1044155_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044208_1044544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044540_1045401_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045417_1045699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045772_1046036_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046279_1047230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047528_1048266_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048701_1049025_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049059_1049620_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049740_1050616_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050628_1051576_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051677_1051971_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051997_1054055_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054069_1054570_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054643_1056350_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057213_1058266_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058318_1058708_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058716_1059349_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059448_1060465_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061295_1062303_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062299_1063943_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063939_1064827_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064967_1065441_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065430_1066453_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066449_1067877_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068814_1069831_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	1073584	1134611	4109537	holin,transposase,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1073584_1074721_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074717_1075791_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075948_1077385_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077475_1078117_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078452_1079469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1079801_1082549_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109445_1109697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112677_1113385_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117437_1118751_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120740_1121469_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121450_1124300_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124512_1125463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125630_1126455_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126454_1127333_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128237_1129353_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129381_1130176_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130172_1132038_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132116_1132749_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132745_1133048_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133090_1134611_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	1152181	1217766	4109537	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1152181_1153978_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153977_1154946_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155015_1155861_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155928_1156483_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156529_1157480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157578_1158211_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166534_1169405_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169450_1170665_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170894_1172322_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172419_1173511_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173523_1174282_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174369_1175272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175268_1176219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176348_1177332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177386_1178109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179587_1180943_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181023_1183399_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183563_1185639_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185700_1186495_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186602_1187565_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187552_1188308_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188415_1190053_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190120_1190858_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190960_1191536_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191708_1192245_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192277_1192592_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192607_1193453_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193491_1194871_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194948_1195830_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195928_1196879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196875_1197286_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197393_1198248_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198240_1199203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199248_1200373_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200478_1201357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201481_1202261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202414_1203836_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204270_1205968_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206194_1207136_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207462_1208209_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208216_1209143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209264_1210182_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210221_1211175_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211199_1211778_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213451_1214060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214137_1214491_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214574_1215564_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215766_1216717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216815_1217766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	1316902	1448929	4109537	transposase	Planktothrix_phage(27.27%)	111	NA	NA
WP_005012808.1|1316902_1317853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318621_1319260_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320149_1320596_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320677_1321379_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321379_1322147_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322143_1323382_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323381_1324308_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324410_1325526_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325541_1326492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326845_1327427_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327423_1328257_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328467_1329781_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329957_1330839_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330858_1331710_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331762_1332851_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332961_1334089_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334323_1334935_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1335033_1335984_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336205_1336583_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336730_1337228_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337224_1337752_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337885_1338701_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338713_1339895_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339942_1340836_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340962_1341433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341558_1342386_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342414_1343191_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343187_1343463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343477_1343942_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343953_1344655_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344764_1345265_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345347_1346526_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348153_1348489_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348676_1350125_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350182_1350527_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350633_1351173_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351265_1352216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1352314_1353265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353363_1353771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354003_1354435_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354616_1355021_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356257_1356581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356583_1357471_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357503_1357929_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358000_1358354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358593_1359100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359138_1360470_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360529_1361345_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361341_1362196_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365258_1367802_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369168_1370923_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370919_1373040_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373044_1375240_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375236_1378578_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|1381380_1382331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930208.1|1382429_1383380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383445_1383625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383741_1384497_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384483_1385629_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386536_1387487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1387674_1388877_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1388873_1389632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1390025_1390658_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1391613_1394214_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1394201_1397621_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1397628_1398534_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1398672_1399251_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1399247_1400159_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1400172_1400853_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1401054_1403094_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1403112_1404099_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1404124_1404922_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1404918_1406112_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1406108_1407071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1407088_1408129_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1408116_1408725_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1410313_1411309_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1411328_1412507_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_003811401.1|1412517_1413435_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1413490_1414441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1414539_1415310_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1415306_1415987_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1416053_1416842_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1417088_1418105_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1418410_1419565_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1424070_1424553_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1424570_1424861_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1424987_1425698_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1425881_1426289_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1426301_1426721_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1426768_1427473_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1427538_1428960_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1428998_1429763_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1429806_1430592_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1430591_1431281_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1431283_1432417_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1432434_1433457_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1433526_1435173_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1435206_1436739_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1436817_1438638_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1438758_1440378_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1440556_1441999_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1442215_1443232_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1443278_1444067_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1444089_1444359_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930334.1|1444375_1445110_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1445178_1445520_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1445530_1446031_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1446023_1447034_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1447036_1447609_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1447978_1448929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	1477100	1515690	4109537	protease,transposase	Emiliania_huxleyi_virus(14.29%)	35	NA	NA
WP_010930352.1|1477100_1478435_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478487_1480824_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480949_1481513_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481521_1482613_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482684_1483140_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483140_1483935_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483931_1485113_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485099_1485705_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485701_1486475_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486486_1487314_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487475_1489839_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489906_1490626_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490749_1491175_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491209_1492160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492277_1493204_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493269_1494427_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494407_1494875_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1495022_1495973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495989_1496424_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496413_1496764_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496960_1498115_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498111_1499284_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499331_1500225_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500270_1500708_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500767_1501457_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501466_1502417_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502515_1503466_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930364.1|1503564_1504527_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_023852833.1|1504753_1505908_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930366.1|1505918_1509161_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1510182_1510827_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1510837_1511737_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1511784_1512870_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1512866_1514561_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|1514739_1515690_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	1598163	1666249	4109537	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1598163_1598652_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598769_1599348_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599453_1599822_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599920_1600871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600877_1601990_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602676_1603879_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604082_1606743_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606755_1610160_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610827_1613053_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613099_1613426_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613476_1614085_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614183_1615134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1615203_1615968_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1615964_1616501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1616667_1617519_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1617578_1618205_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1618201_1619152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1619250_1620363_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1620352_1621354_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1621459_1622971_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1622967_1624272_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1624383_1624944_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1625211_1625766_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1626221_1626437_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1626691_1629289_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1629285_1630473_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1631131_1631746_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1631834_1632956_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1632973_1633879_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1634771_1635722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1635903_1636656_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1636724_1637384_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1637380_1638109_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1638121_1640401_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1640425_1640629_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1640670_1641303_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1641438_1642356_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1642352_1643066_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1643303_1644074_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1644078_1644678_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1644922_1646413_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1646471_1646756_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1647321_1648248_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1648384_1649125_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1649291_1650668_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1650849_1651755_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1653406_1655209_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1655326_1655977_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1656075_1657026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1657047_1658268_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1658453_1659866_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1659929_1660997_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1660996_1662484_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1662493_1663438_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1663597_1664296_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1664373_1665279_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1665298_1666249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	1702198	1757789	4109537	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1702198_1703149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1703207_1703981_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1703973_1705530_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1705526_1706477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1707803_1708406_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1708645_1709347_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1709340_1710123_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1710307_1711258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1711356_1712094_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1712283_1713042_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1713088_1714078_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1714255_1715224_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1716763_1717732_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1717740_1718682_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1719155_1720166_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1720156_1721671_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1721667_1723014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1723016_1724051_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1724100_1725726_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1726278_1727229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1727333_1728281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1728334_1730149_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1730141_1730816_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1730945_1734020_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1734033_1734333_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1734647_1735271_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1735514_1736384_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1736361_1737306_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1737391_1738318_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1738430_1739210_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1739200_1740397_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1740427_1741378_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1741599_1742289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1742353_1743109_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1743160_1744153_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1744162_1745116_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1745231_1746194_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1747595_1748024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1748020_1748971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1749264_1749987_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1750425_1751613_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1751616_1751967_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1753716_1754688_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1754701_1755415_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1755419_1756337_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1756443_1756740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1756838_1757789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	1990553	2060205	4109537	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1990553_1993211_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1993288_1994491_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1994487_1995000_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1995122_1995560_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1995836_1996787_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1996885_1997836_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1997999_1999895_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2000008_2000176_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2000239_2000476_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2000844_2001996_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2003559_2004510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2004961_2005963_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2006135_2006993_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2006989_2008252_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2008352_2008727_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2008799_2009987_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2010071_2010842_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2010955_2011720_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2011670_2012972_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2012968_2013775_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2015519_2016491_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016647_2017160_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2017318_2018293_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2019293_2020088_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2020113_2020920_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2021030_2021621_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2021631_2022810_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2022912_2023287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2023539_2024871_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2024937_2028168_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2029658_2030405_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2030489_2030951_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2030988_2032047_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2032009_2033839_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2033878_2034451_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2035875_2036697_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2037015_2038338_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2038697_2039333_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2039292_2040243_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2041113_2041986_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2042063_2043203_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2043561_2044818_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2044823_2045351_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2045355_2046174_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2046173_2046896_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2046917_2047232_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2047249_2048398_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2048428_2049304_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2049300_2050620_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2050692_2051889_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2051899_2053387_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2055981_2056881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057018_2057984_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058082_2059033_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2059254_2060205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2071701	2121103	4109537	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2071701_2072652_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2073795_2074092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2074266_2075619_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2075761_2076778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2078757_2079771_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_077100545.1|2079857_2080763_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2080919_2081264_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2081421_2081880_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2081893_2084110_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2084106_2085168_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2085196_2086171_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2086122_2086941_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2086953_2087562_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2087736_2088132_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2088150_2089590_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2089618_2089966_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2089984_2090935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2091587_2092538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2092621_2094439_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2094512_2095160_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2095172_2096102_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2096271_2096736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2096983_2097664_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2097712_2099404_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2099419_2099971_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2099967_2100339_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2100451_2101288_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2101298_2101823_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2101920_2102100_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2102229_2103204_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2103334_2103691_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2103680_2104556_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2104654_2105539_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2105560_2106856_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2107804_2108455_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2108542_2110063_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2110320_2112186_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2113231_2114182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2114199_2114340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2115154_2115514_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2115501_2116938_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2116934_2117588_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2117584_2118778_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2118881_2120156_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2120152_2121103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2132307	2172998	4109537	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2132307_2133258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2133356_2134307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2134266_2134680_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2134964_2135264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2135673_2137956_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2138421_2138616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2138641_2140672_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2140691_2140904_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2141181_2141721_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2141834_2143130_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2143206_2144364_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2144547_2145447_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2145465_2146770_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2146735_2147842_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2147929_2148166_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2148304_2149375_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2149378_2150734_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2150760_2151918_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2151923_2152562_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2152563_2153859_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2153908_2155195_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2155210_2155717_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2155713_2156862_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2156889_2157315_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2157637_2160520_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2160612_2161368_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2162133_2163483_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005013747.1|2163581_2164532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2164630_2165581_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2165654_2166128_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2166153_2167362_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2167358_2168132_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2168131_2168755_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2168920_2169181_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2169484_2170066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2170132_2170387_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2170373_2172998_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 20
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2200781	2257066	4109537	protease,transposase	Lake_Baikal_phage(25.0%)	51	NA	NA
WP_010929577.1|2200781_2201732_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2201932_2202742_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2202866_2203817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2203813_2204707_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2204831_2205026_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2205025_2205367_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2205376_2207239_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2207368_2207881_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2207883_2208207_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2208208_2208619_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2208656_2209868_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2209885_2210398_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2210613_2211105_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2211357_2213394_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2213471_2214674_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2214802_2215453_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2217010_2217961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2218531_2218744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2218761_2219493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2219527_2220169_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2220161_2220830_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223042_2223819_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2223840_2224998_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2224994_2225426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2225422_2226220_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2226239_2226641_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2226707_2227679_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2227744_2228968_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2229195_2230146_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2230269_2232723_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2232911_2234216_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2234320_2234974_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2234976_2236287_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2236465_2237044_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2237155_2237356_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2237701_2238268_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2238351_2238555_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2238861_2239182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2239223_2239505_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2239579_2240836_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2241218_2241548_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2243118_2243940_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2243939_2245079_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245085_2245982_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2245996_2247904_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2248263_2250876_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2250928_2253229_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2253225_2254434_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2254695_2255070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255066_2256017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2256115_2257066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2260173	2315492	4109537	transposase,tRNA	Klosneuvirus(15.38%)	48	NA	NA
WP_010930542.1|2260173_2263035_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263037_2263544_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263648_2264857_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264858_2265797_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265958_2266432_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266428_2267379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2267489_2267930_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2268058_2269288_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2269326_2270148_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2270201_2271353_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2271444_2271933_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2274483_2277033_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2277103_2279677_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2279942_2280143_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2280174_2280336_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2280393_2280732_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2280880_2281831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2281929_2282880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2282978_2283929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2284703_2285372_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2285353_2287309_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2287551_2288301_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2288313_2289177_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2289180_2290596_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2290729_2291458_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2291596_2291797_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2291972_2292371_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2292394_2293795_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2293913_2294666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2294954_2295632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2295658_2296438_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2296434_2297319_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2297336_2298116_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2298100_2298859_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2298996_2299632_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2299899_2300916_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2301013_2302054_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2302188_2303481_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2304840_2305224_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2305241_2305829_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2305866_2306817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2306915_2307476_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2307472_2308018_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2308213_2309242_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2309282_2310623_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2310731_2311736_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2311842_2314443_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2314541_2315492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2354605	2418183	4109537	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2354605_2355556_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2355857_2356334_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2356957_2358595_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2358625_2359939_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2360072_2360390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2360490_2361813_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361809_2362760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2362858_2363809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2364338_2365361_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2365389_2366220_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2366236_2367934_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2367998_2369075_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2369234_2370098_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2370128_2370698_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2370714_2371566_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2372623_2373505_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2373579_2374569_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2374631_2375582_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2375644_2376502_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2376561_2377050_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2378622_2379813_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2379809_2381396_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2381414_2382482_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2382586_2384131_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2384550_2386125_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2386241_2387249_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2387245_2388085_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2388089_2389727_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2389723_2390674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2390816_2392091_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2392120_2392411_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2392483_2393497_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2393516_2394779_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2394781_2395705_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2395701_2397195_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2397205_2398138_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2398319_2399645_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2399679_2401035_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2401095_2402616_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2402770_2403502_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2403599_2404910_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2404925_2405837_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2405827_2406421_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2406482_2406869_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2406880_2407351_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2407362_2407986_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2408006_2410754_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2417232_2418183_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2538331	2604052	4109537	protease,transposase,tRNA	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2538331_2540275_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540271_2541192_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541211_2541799_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541791_2542682_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542678_2543440_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543445_2544330_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544352_2546146_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546276_2547764_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547801_2548860_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548859_2549360_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549372_2549972_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549968_2550469_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550470_2551700_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551889_2552129_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552311_2553064_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553065_2554001_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554082_2555069_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555068_2556127_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556183_2556366_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556417_2557011_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557119_2557719_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557715_2558426_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558427_2559255_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561071_2562313_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562324_2563098_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563124_2564075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564173_2564956_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565044_2566271_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566996_2568382_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568400_2569006_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2569002_2570859_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570855_2571656_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571670_2572864_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572931_2573906_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574028_2575252_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575362_2577567_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577861_2578521_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578528_2578735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579073_2579829_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580099_2580615_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580887_2581205_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581392_2581629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581919_2583275_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583321_2584662_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584763_2585396_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585395_2587765_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587797_2588757_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588743_2589430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589426_2589759_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589874_2590825_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590923_2591874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591870_2593937_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593936_2594209_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594903_2594993_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594992_2596777_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596800_2598966_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598976_2599576_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602397_2603093_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603101_2604052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2690169	2730837	4109537	transposase,tRNA	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2690169_2691120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691230_2691413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691512_2692109_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692292_2693384_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693883_2694294_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694352_2694682_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694699_2697117_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697129_2698152_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698226_2698586_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698601_2698799_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699134_2700085_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700279_2700729_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700725_2701676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701786_2703235_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703349_2703595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703734_2704685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704929_2705643_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705765_2705993_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706287_2706926_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707034_2708069_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708065_2709016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709431_2709956_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709959_2710229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710427_2711489_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711572_2713207_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713208_2714012_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714040_2715000_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2715003_2716518_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716554_2717559_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248146.1|2717566_2717815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2717989_2718460_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718495_2719107_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719137_2719761_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719841_2721374_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721408_2722626_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722693_2723725_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723721_2724891_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724884_2725565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725726_2726569_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726731_2727703_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727874_2728753_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728775_2729846_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729886_2730837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2734948	2817083	4109537	transposase,tRNA	Bacillus_virus(28.57%)	60	NA	NA
WP_005013747.1|2734948_2735899_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2736648_2737062_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2737075_2738311_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2738318_2739113_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2739109_2739913_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2739939_2740917_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2740945_2742517_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2742527_2743349_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2745073_2746504_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2746516_2747206_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2747301_2748642_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2748643_2748901_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2749254_2750847_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2750943_2752404_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2752626_2753238_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2756984_2757935_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2758350_2760987_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2760983_2762108_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2762104_2763487_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2763622_2764090_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2764211_2764880_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_010931045.1|2764952_2766155_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2766156_2767887_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2768004_2768313_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2768325_2769138_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2770018_2772184_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2772309_2773098_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2773137_2774742_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2774822_2775563_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2775570_2776065_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2776437_2777457_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2777453_2778836_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2778868_2779729_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2780732_2781614_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2781672_2782110_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2782200_2783172_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2783210_2784155_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2784250_2785060_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2785136_2785511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2785617_2786310_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2786302_2786719_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786829_2787462_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787490_2787934_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787955_2789047_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789101_2789902_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790037_2790658_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790797_2791271_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792410_2793361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931067.1|2801258_2805305_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805617_2806199_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806195_2807494_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807573_2808602_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808862_2809813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809809_2810760_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811076_2811682_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811735_2813049_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813123_2813594_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813593_2814382_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814392_2816045_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816132_2817083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2841008	2889767	4109537	transposase	Pelagibacter_phage(25.0%)	41	NA	NA
WP_005012067.1|2841008_2841959_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842093_2843200_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843210_2844308_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844452_2845658_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845664_2846186_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846182_2846665_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846670_2846922_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846902_2847388_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847523_2850985_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2851002_2851887_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851896_2852328_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852574_2853078_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853155_2854556_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854630_2855506_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855502_2856510_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856977_2857283_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857373_2857964_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858154_2859171_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859362_2861699_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861781_2862216_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010930048.1|2862314_2863265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|2863363_2864314_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864412_2865363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2865359_2866154_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2866185_2866890_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2866964_2867765_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2867761_2868169_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2868165_2868807_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2868799_2870800_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2872060_2873392_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2873388_2874339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2876045_2876312_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2877019_2877358_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2881912_2882515_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2882611_2883901_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2883958_2884690_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2884686_2885490_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885486_2886575_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2886571_2887501_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2887649_2888795_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2888816_2889767_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2897764	2961511	4109537	protease,transposase	uncultured_Mediterranean_phage(25.0%)	54	NA	NA
WP_010931114.1|2897764_2900080_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900135_2902304_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2902300_2907481_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907579_2907894_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908121_2908367_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908461_2908980_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909079_2910285_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910400_2911798_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2911914_2912493_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912565_2913957_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2914124_2915075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915355_2915976_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2915972_2916386_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916382_2917426_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917481_2917670_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917679_2918444_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918534_2919191_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919282_2920041_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920066_2921668_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2921868_2922873_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2922973_2923237_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923354_2924131_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924721_2925672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928055_2929168_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929224_2930175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2930383_2930605_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2930818_2932225_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2932221_2933526_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2933522_2934710_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2934926_2935379_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2935381_2935846_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003813085.1|2937708_2938686_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2938765_2939734_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2939754_2941128_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2941124_2941961_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2942077_2942533_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2942548_2942821_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2942913_2943237_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2943284_2943665_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2943884_2944682_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2944838_2946701_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2946750_2947662_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2947666_2947933_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2948019_2948850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2949024_2949990_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2950160_2951171_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2951318_2952470_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2953612_2955085_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2955095_2955506_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2955569_2956616_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2956722_2957601_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2957614_2958811_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2958872_2960564_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2960560_2961511_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	2970270	3029450	4109537	transposase	Bacillus_virus(28.57%)	56	NA	NA
WP_010930176.1|2970270_2971221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2971301_2972450_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972506_2973457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973555_2973861_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2973889_2974324_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974325_2975570_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975566_2976277_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976291_2977203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977565_2977970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2977966_2978425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2978431_2979340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2979336_2980203_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980189_2981017_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981027_2982155_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983232_2984471_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984512_2985775_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985781_2986534_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986585_2986771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987046_2987511_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987542_2988202_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988346_2990455_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|2990451_2991402_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991505_2992126_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2992229_2992970_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994104_2995229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995274_2995643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995884_2996835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2997870_2998413_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998798_2999749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2999745_3000654_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000780_3001617_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002129_3003239_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003300_3004251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3004443_3005226_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_162494312.1|3005239_3006004_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	1.8e-12
WP_010931161.1|3006016_3007363_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3007388_3008318_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3008433_3009339_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3009356_3010556_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3010628_3011321_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3011369_3013796_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3013840_3014791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3015007_3015376_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3015662_3016589_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3016632_3017643_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3017639_3018074_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3019199_3019988_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3019997_3020780_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3020783_3021875_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3021980_3023456_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3023597_3024146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3024161_3024623_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3024723_3025713_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3026011_3026713_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3026751_3028125_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3028163_3029450_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	3126834	3190669	4109537	protease,transposase,tRNA	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3126834_3127785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3127930_3129055_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3129260_3129824_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3130818_3131301_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3131458_3132706_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3132926_3133583_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3133618_3134848_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3135115_3136066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3136157_3137573_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3137578_3138715_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3138784_3139156_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3139243_3139990_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3140026_3141091_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3141279_3141672_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3141681_3142110_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3142405_3143503_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3143844_3145209_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3145267_3145819_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3145832_3146507_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3147763_3148573_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3148575_3149412_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3149426_3150119_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3150130_3150520_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3150625_3152014_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3152130_3153627_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3153923_3154598_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3154696_3155647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3155643_3158103_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_033446281.1|3158238_3159645_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3159648_3160836_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3160904_3161414_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3161615_3162068_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3162629_3165692_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3165997_3168925_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3168946_3170143_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3170460_3170988_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_023853329.1|3171141_3171702_+	YggT family protein	NA	NA	NA	NA	NA
WP_023853325.1|3171709_3173164_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3173183_3174311_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_019248818.1|3174440_3175616_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3175593_3175833_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3176113_3176617_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3176789_3177731_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3177742_3178840_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3179805_3181152_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3181161_3181611_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3181700_3182135_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3182213_3182762_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3182844_3184215_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3184225_3184819_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3184890_3186774_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3186811_3187711_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3187707_3188571_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_010929853.1|3188669_3189620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3189718_3190669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	3238813	3254050	4109537	protease,transposase	Erwinia_phage(100.0%)	15	NA	NA
WP_005012808.1|3238813_3239764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3240208_3240520_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3240519_3241050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3241212_3242163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3242261_3243212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3243501_3243966_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3243980_3245486_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3245739_3247347_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3247402_3248308_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3248748_3249699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3249797_3250748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3250829_3251411_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3251835_3252141_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3252154_3253489_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3253510_3254050_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 31
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	3272473	3337357	4109537	protease,integrase,holin,transposase,tRNA	Tupanvirus(12.5%)	49	3265867:3265885	3338625:3338643
3265867:3265885	attL	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
WP_010931277.1|3272473_3272809_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3272808_3273651_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3273749_3274700_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3274764_3275736_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3275799_3276819_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3276820_3278194_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3278471_3279152_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3279227_3281291_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3281287_3282382_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3282396_3283656_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3283675_3285364_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3285638_3286391_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3286529_3287480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3287792_3289271_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3289277_3290387_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3290398_3291079_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3291100_3291856_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3291991_3292876_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3292963_3293545_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3293805_3294105_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3294256_3294736_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3295455_3296892_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3296888_3297392_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3297407_3298358_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3298885_3299659_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3299791_3300802_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3300953_3302609_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3302663_3303005_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3303018_3304458_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3304590_3305406_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3305599_3306550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3307937_3308885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3309111_3309852_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3309937_3310888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3312329_3313901_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3314233_3316087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3316131_3318696_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3319114_3320065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3322930_3323425_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3323441_3324392_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3324378_3324579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3324575_3325787_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3325802_3328754_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_019247951.1|3328755_3331512_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3332022_3333069_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3333410_3334538_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3334817_3335909_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3335981_3336764_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3336760_3337357_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3338625:3338643	attR	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
>prophage 32
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	3386295	3440036	4109537	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3386295_3387246_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3387650_3388295_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3388319_3388904_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3389004_3389622_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3389624_3391340_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3391336_3391645_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3391661_3392279_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3392323_3392626_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3392726_3393581_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3393768_3393993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3394162_3394435_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3394852_3395260_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3395629_3396424_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3396524_3397760_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3397828_3398845_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3398856_3400233_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3400229_3401426_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3401422_3402961_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3402957_3404217_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3406157_3407108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3407874_3408969_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3408961_3410296_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3410249_3410933_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3410958_3412122_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3412118_3413120_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3413119_3413992_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3413988_3414738_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3414734_3415526_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3415522_3416662_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3416937_3417723_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3417756_3418539_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3418542_3418932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077100548.1|3420071_3420935_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3420970_3422059_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3422055_3423006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3423359_3426338_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3427264_3428143_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3430091_3431042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3431038_3431506_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3431548_3432319_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3432339_3433140_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3433150_3434560_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3434654_3435440_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3435679_3436696_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3436803_3437196_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3437333_3438014_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3438018_3438990_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3439085_3440036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	3446191	3505491	4109537	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3446191_3447955_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3448066_3448945_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3449057_3449873_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3449876_3450128_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3450212_3451229_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3451559_3451781_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3454141_3455059_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3455556_3456765_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3456844_3458416_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3458533_3459469_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3459657_3460602_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3461169_3466887_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3466892_3468020_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3468075_3468702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3468973_3469990_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3470085_3470796_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3470792_3471782_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3471877_3473509_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3473511_3474249_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3474404_3475277_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3475626_3476766_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3476762_3477422_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3477493_3478126_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3478155_3478674_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3478684_3479794_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3479840_3480695_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3480696_3481599_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3482821_3483772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3485528_3486518_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3486693_3487482_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3487478_3488510_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3488528_3489092_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3489147_3490668_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3490931_3491636_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3491643_3492372_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3492486_3492861_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3492903_3494193_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3494189_3495359_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3495355_3496195_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3496254_3497190_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3497202_3498153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3498251_3499214_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3499245_3499605_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3499729_3500632_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3500633_3502406_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3502440_3503217_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3504540_3505491_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	3520429	3578502	4109537	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3520429_3521380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3521508_3522642_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3522685_3523591_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3523593_3525294_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3525290_3526211_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3526218_3527196_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3527254_3528289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3530263_3530500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3530626_3531490_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3531578_3532400_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3532479_3533217_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3533213_3534206_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3534358_3534982_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3535026_3536175_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3538498_3539449_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3539789_3540740_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3540838_3541789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3542085_3542583_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3542625_3544401_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3544408_3545275_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3545281_3546016_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3547185_3547980_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3548269_3548860_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3548893_3550222_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3550296_3551442_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3551553_3552552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3552514_3552949_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3554465_3555350_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3555346_3556552_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3556548_3557409_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3557521_3559312_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3559352_3559997_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3560018_3560327_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3560492_3561779_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3563212_3564163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3566114_3567329_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3567434_3568424_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3568420_3569029_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3569041_3569671_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3569667_3570288_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3570319_3571111_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3571962_3572418_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3572436_3573363_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3573416_3574703_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3575633_3576506_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3576502_3577453_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3577551_3578502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 35
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	3710626	3842492	4109537	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	112	3756319:3756336	3798849:3798866
WP_010929577.1|3710626_3711577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3711676_3712627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3712623_3713259_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3713388_3714288_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3714383_3714875_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3714921_3715887_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3717020_3718262_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3718375_3719392_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3719426_3719903_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3720045_3720954_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3721067_3722180_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3722280_3722766_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3722902_3724153_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3724254_3724767_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3724865_3725816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3725881_3726820_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3726842_3727469_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3727465_3728122_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3728118_3728721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3728727_3729315_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3729495_3730065_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3730135_3731455_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3731561_3731753_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3732004_3733294_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3733448_3734444_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3734528_3735203_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3735199_3736150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3736311_3737553_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3737549_3738494_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3738612_3739563_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3739522_3740452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3740505_3740841_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3740885_3741650_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3741673_3742414_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3742421_3743975_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3744009_3744987_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3745259_3745841_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3745892_3752795_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3753241_3753373_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3753638_3753845_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3754849_3755509_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3755536_3756682_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3756319:3756336	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3756822_3757158_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3757232_3758093_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3758356_3759058_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3759227_3759623_+	RidA family protein	NA	NA	NA	NA	NA
WP_005013747.1|3759732_3760683_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3760718_3761186_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3761419_3761797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3761793_3761976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3761979_3762966_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3762962_3763610_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3763667_3764195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3764231_3765416_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3765426_3765768_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3765880_3766081_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3766077_3767067_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3768553_3770524_-	DUF3220 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3770765_3771164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3771172_3772096_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3772553_3773504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3773734_3775426_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3775474_3775747_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3775743_3776115_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3776210_3776345_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3776750_3778160_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3778162_3779272_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3779366_3781820_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3781938_3782730_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3782849_3784277_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3784315_3785287_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3785705_3786869_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3786956_3787802_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3789358_3790309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3790863_3791238_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3791312_3792371_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3792394_3793345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3796226_3797396_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3797496_3799104_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3798849:3798866	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3799150_3801172_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3801200_3801446_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3801459_3802650_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3802845_3803811_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3803833_3804973_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3805184_3806147_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3806270_3808295_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3808491_3810735_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3811013_3811472_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3812399_3815021_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3815084_3817712_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3817863_3818928_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3818927_3819698_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3819706_3820540_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3820552_3821332_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3821405_3822839_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3822866_3823625_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3823680_3825531_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3825624_3826101_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3826117_3827038_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3827144_3827645_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3828018_3828711_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_010929591.1|3829019_3829970_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3829966_3833740_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3834076_3835966_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3835977_3836871_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3836974_3837772_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3837768_3838620_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3838681_3839362_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019247189.1|3839389_3839725_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3839725_3840685_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3840705_3841194_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3841475_3842492_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 36
NZ_CP011708	Bordetella pertussis strain H853 chromosome, complete genome	4109537	4008605	4073517	4109537	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4008605_4009091_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009179_4009317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009309_4010290_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010556_4011366_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011405_4012086_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012079_4012538_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012549_4012912_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4012994_4013678_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013733_4014042_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014060_4014375_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014371_4016846_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016853_4018245_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018241_4018427_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018405_4019107_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019103_4019925_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019905_4021030_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021022_4022042_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022247_4023138_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023382_4024174_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024256_4024631_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024608_4026018_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026010_4027393_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027727_4029332_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029409_4030381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030391_4031318_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4031708_4032659_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032828_4034055_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034254_4035121_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035113_4036076_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036176_4037127_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037225_4038176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038274_4039225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039221_4040715_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040711_4043819_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043815_4046884_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046880_4048131_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048311_4049064_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049105_4049750_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049758_4050739_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050838_4051582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051664_4052012_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052109_4052952_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4052996_4053884_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053910_4054099_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054196_4055654_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055640_4057167_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057185_4057653_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057652_4058675_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058795_4059536_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059590_4060691_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060692_4061883_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062002_4063019_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063337_4064009_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064005_4064914_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065125_4065773_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069633_4070701_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070711_4071521_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071610_4072384_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4072566_4073517_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
