The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	27282	70036	4103252	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	77634	136108	4103252	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	164893	225404	4103252	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_077085655.1|194405_195356_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	233336	286924	4103252	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	390856	448365	4103252	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	590419	651610	4103252	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591845_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620619_620784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624028_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639096_640449_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647292_648165_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	656934	703125	4103252	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691856_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	709291	763220	4103252	tRNA,transposase	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|713670_714987_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715018_715516_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715602_716292_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716291_717341_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717337_718132_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718300_718651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718626_719184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720313_721264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723401_724631_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724633_726076_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726180_727326_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727357_728155_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728179_729739_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729735_732108_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732217_733321_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733320_734013_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734156_734858_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734842_735220_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735951_736902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737061_737934_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738274_738493_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738532_739912_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739953_741351_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741390_743043_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743046_743931_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743930_744872_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744950_746570_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746736_747552_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747619_748189_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748189_749140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749794_750892_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750925_752191_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752348_753299_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753542_754133_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754148_756593_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756712_757684_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757815_758340_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758299_759250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759471_761667_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761739_762147_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762269_763220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	885809	953785	4103252	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885809_886826_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887022_888006_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889604_890993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891023_892013_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892123_893356_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893637_894438_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894460_896692_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897479_897926_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897947_898694_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898837_899815_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900448_901060_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901053_902271_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902411_903362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903358_904078_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904198_906358_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906448_906718_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906806_907013_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907011_907539_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907557_908337_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908504_909521_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909593_910085_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910095_911811_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912974_913925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913921_915754_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916152_916812_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917339_918020_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918301_919018_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919032_920334_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922478_925367_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925590_926943_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926971_927493_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927489_928944_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928978_929227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929332_930208_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930233_931289_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931301_932093_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932125_933496_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934672_935623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935675_935897_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936056_936269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936388_937507_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937603_937819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938012_938264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938376_939327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939323_939707_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939761_941576_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941725_942553_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942598_943579_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943575_943788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943784_944966_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945129_945864_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945865_948478_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948613_950527_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951142_951553_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951650_952736_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952834_953785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	997319	1069841	4103252	tRNA,transposase	Enterococcus_phage(14.29%)	58	NA	NA
WP_005012067.1|997319_998270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998374_999424_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999561_1000578_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002086_1002659_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002718_1003450_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003501_1004419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005226_1008406_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008402_1009785_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009854_1010106_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010251_1010866_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011052_1013113_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013242_1014094_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014090_1014717_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014713_1016468_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016760_1019466_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930129.1|1021151_1022942_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023163_1024339_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024381_1025332_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025430_1026171_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026365_1028402_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028419_1029430_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029547_1030741_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030770_1031544_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031540_1032731_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032756_1033695_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033691_1036040_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036194_1036836_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038165_1038318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819814.1|1038924_1039410_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039587_1040526_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040528_1040846_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040891_1041836_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043516_1044167_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044220_1044556_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044552_1045413_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045429_1045711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045784_1046048_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046291_1047242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047540_1048278_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048713_1049037_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049071_1049632_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049751_1050627_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050639_1051587_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051688_1051982_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1052008_1054066_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054080_1054581_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054654_1056361_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057224_1058277_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058329_1058719_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058727_1059360_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059459_1060476_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061306_1062314_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062310_1063954_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063950_1064838_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064978_1065452_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065441_1066464_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066460_1067888_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068824_1069841_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	1073593	1134620	4103252	tRNA,holin,transposase	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1073593_1074730_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074726_1075800_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075957_1077394_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077484_1078126_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078461_1079478_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082624_1084046_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084309_1085026_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085110_1085428_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085468_1085882_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085883_1086243_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086285_1087830_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087913_1088744_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088778_1089933_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089975_1090848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090964_1093253_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094459_1094924_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094950_1095901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095918_1096056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096268_1097045_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097089_1097947_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097968_1098985_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099119_1100160_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100354_1102436_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102671_1104165_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104395_1105190_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105410_1106769_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106765_1107608_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107626_1109513_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109454_1109706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109750_1110383_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110401_1111004_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111155_1112106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112686_1113394_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113752_1114739_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114878_1115892_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115888_1116839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116856_1116997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116951_1117410_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117446_1118760_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118777_1119149_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119145_1120609_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120749_1121478_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121459_1124309_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124521_1125472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125639_1126464_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126463_1127342_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128246_1129362_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129390_1130185_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130181_1132047_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132125_1132758_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132754_1133057_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133099_1134620_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	1152190	1217773	4103252	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152190_1153987_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153986_1154955_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155024_1155870_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155937_1156492_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156538_1157489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157587_1158220_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158383_1160666_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160820_1163517_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163642_1164131_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166541_1169412_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169457_1170672_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170901_1172329_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172426_1173518_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173530_1174289_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174376_1175279_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175275_1176226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176355_1177339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177393_1178116_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179594_1180950_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181030_1183406_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183570_1185646_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185707_1186502_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186609_1187572_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187559_1188315_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188422_1190060_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190127_1190865_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190967_1191543_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191715_1192252_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192284_1192599_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192614_1193460_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193498_1194878_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194955_1195837_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195935_1196886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196882_1197293_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197400_1198255_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198247_1199210_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199255_1200380_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200485_1201364_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201488_1202268_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202421_1203843_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204277_1205975_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206201_1207143_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207469_1208216_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208223_1209150_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209271_1210189_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210228_1211182_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211206_1211785_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213458_1214067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214144_1214498_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214581_1215571_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215567_1215756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215773_1216724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1216822_1217773_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	1316909	1385396	4103252	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316909_1317860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318628_1319267_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320156_1320603_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1320684_1321386_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321386_1322154_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322150_1323389_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323388_1324315_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324417_1325533_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325548_1326499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326852_1327434_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327430_1328264_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328474_1329788_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329964_1330846_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330865_1331717_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331769_1332858_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332968_1334096_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334330_1334942_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1335040_1335991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336212_1336590_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336737_1337235_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337231_1337759_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337892_1338708_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1338720_1339902_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339949_1340843_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340969_1341440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341565_1342393_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342421_1343198_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343194_1343470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343484_1343949_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343960_1344662_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1344771_1345272_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345354_1346533_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348160_1348496_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348683_1350132_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350189_1350534_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350640_1351180_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351272_1352223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1352240_1352480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352961_1353393_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1353574_1353979_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355215_1355539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355541_1356429_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356461_1356887_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356958_1357312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357551_1358058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358096_1359428_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359487_1360303_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360299_1361154_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364216_1366760_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368126_1369881_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369877_1371998_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1372002_1374198_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374194_1377536_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380338_1381289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381354_1381534_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381650_1382406_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382392_1383538_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384445_1385396_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	1445887	1501374	4103252	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_041337087.1|1445887_1446838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448038_1448485_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448477_1449953_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449949_1450705_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450697_1451708_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451697_1453374_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453686_1454019_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454032_1454428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454437_1454764_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1454760_1455087_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455013_1456036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456032_1456383_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456430_1456859_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456866_1458240_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458380_1458758_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459020_1460328_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460388_1461219_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461215_1461704_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461745_1463266_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463309_1463786_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464589_1467187_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467216_1468038_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468764_1469514_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469697_1470576_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470673_1471390_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471404_1471965_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472131_1472896_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472915_1473773_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473769_1474969_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475008_1476343_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476395_1478732_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478857_1479421_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479429_1480521_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480592_1481048_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481048_1481843_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481839_1483021_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483007_1483613_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483609_1484383_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484394_1485222_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485383_1487747_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487814_1488534_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488657_1489083_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1489117_1490068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490185_1491112_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491177_1492335_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492315_1492783_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492930_1493881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493897_1494332_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494321_1494672_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494868_1496023_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1496019_1497192_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497239_1498133_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498178_1498616_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498675_1499365_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1499374_1500325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500423_1501374_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	1596071	1664157	4103252	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1596071_1596560_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1596677_1597256_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1597361_1597730_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1597828_1598779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1598785_1599898_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1600584_1601787_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1601990_1604651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1604663_1608068_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1608735_1610961_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1611007_1611334_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1611384_1611993_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1612091_1613042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1613111_1613876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1613872_1614409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1614575_1615427_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1615486_1616113_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1616109_1617060_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1617158_1618271_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1618260_1619262_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1619367_1620879_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1620875_1622180_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1622291_1622852_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1623119_1623674_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1624129_1624345_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1624599_1627197_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1627193_1628381_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1629039_1629654_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1629742_1630864_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1630881_1631787_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1632679_1633630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1633811_1634564_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1634632_1635292_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1635288_1636017_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1636029_1638309_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1638333_1638537_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1638578_1639211_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1639346_1640264_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1640260_1640974_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1641211_1641982_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1641986_1642586_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1642830_1644321_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1644379_1644664_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1645229_1646156_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1646292_1647033_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1647199_1648576_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1648757_1649663_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1651314_1653117_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1653234_1653885_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1653983_1654934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1654955_1656176_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1656361_1657774_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1657837_1658905_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1658904_1660392_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1660401_1661346_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1661505_1662204_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1662281_1663187_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1663206_1664157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	1700106	1755697	4103252	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1700106_1701057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1701115_1701889_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1701881_1703438_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1703434_1704385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1705711_1706314_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1706553_1707255_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1707248_1708031_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1708215_1709166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1709264_1710002_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1710191_1710950_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1710996_1711986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1712163_1713132_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1714671_1715640_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1715648_1716590_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1717063_1718074_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1718064_1719579_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1719575_1720922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1720924_1721959_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1722008_1723634_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1724186_1725137_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1725241_1726189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1726242_1728057_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1728049_1728724_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1728853_1731928_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1731941_1732241_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1732555_1733179_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1733422_1734292_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1734269_1735214_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1735299_1736226_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1736338_1737118_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1737108_1738305_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1738335_1739286_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1739507_1740197_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1740261_1741017_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1741068_1742061_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1742070_1743024_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1743139_1744102_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1745503_1745932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1745928_1746879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1747172_1747895_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1748333_1749521_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1749524_1749875_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1751624_1752596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1752609_1753323_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1753327_1754245_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1754351_1754648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1754746_1755697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	1988460	2058112	4103252	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1988460_1991118_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1991195_1992398_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1992394_1992907_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1993029_1993467_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1993743_1994694_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1994792_1995743_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1995906_1997802_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1997915_1998083_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1998146_1998383_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1998751_1999903_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2001466_2002417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2002868_2003870_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2004042_2004900_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2004896_2006159_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2006259_2006634_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2006706_2007894_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2007978_2008749_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2008862_2009627_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2009577_2010879_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2010875_2011682_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2013426_2014398_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2014554_2015067_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2015225_2016200_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2017200_2017995_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2018020_2018827_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2018937_2019528_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2019538_2020717_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2020819_2021194_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2021446_2022778_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2022844_2026075_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2027565_2028312_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2028396_2028858_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2028895_2029954_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2029916_2031746_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2031785_2032358_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2033782_2034604_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2034922_2036245_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2036604_2037240_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2037199_2038150_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2039020_2039893_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2039970_2041110_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2041468_2042725_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2042730_2043258_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2043262_2044081_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2044080_2044803_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2044824_2045139_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2045156_2046305_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2046335_2047211_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2047207_2048527_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2048599_2049796_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2049806_2051294_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2053888_2054788_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2054925_2055891_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2055989_2056940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2057161_2058112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2069608	2119003	4103252	transposase	Erysipelothrix_phage(16.67%)	44	NA	NA
WP_005013747.1|2069608_2070559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2071696_2071993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2072167_2073520_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2073662_2074679_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2076658_2077672_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2077758_2078664_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2078820_2079165_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2079322_2079781_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2079794_2082011_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2082007_2083069_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2083097_2084072_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2084023_2084842_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2084854_2085463_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2085637_2086033_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2086051_2087491_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2087519_2087867_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2087885_2088836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2089488_2090439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2090522_2092340_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2092413_2093061_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2093073_2094003_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2094172_2094637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2094884_2095565_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2095613_2097305_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2097320_2097872_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2097868_2098240_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2098352_2099189_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2099199_2099724_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2099821_2100001_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2100130_2101105_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2101235_2101592_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2101581_2102457_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2102555_2103440_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2103461_2104757_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2105705_2106356_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2106443_2107964_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2111131_2112082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2112099_2112240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2113054_2113414_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2113401_2114838_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2114834_2115488_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2115484_2116678_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2116781_2118056_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2118052_2119003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2130207	2198583	4103252	tRNA,protease,transposase	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2130207_2131158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2131117_2131531_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2131815_2132115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2132524_2134807_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2135272_2135467_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2135492_2137523_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2137542_2137755_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2138032_2138572_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2138685_2139981_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2140057_2141215_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2141398_2142298_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2142316_2143621_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2143586_2144693_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2144780_2145017_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2145155_2146226_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2146229_2147585_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2147611_2148769_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2148774_2149413_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2149414_2150710_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2150759_2152046_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2152061_2152568_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2152564_2153713_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2153740_2154166_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2154488_2157371_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2157463_2158219_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2158984_2160334_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2160432_2161383_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2161481_2162432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2162505_2162979_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2163004_2164213_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2164209_2164983_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2164982_2165606_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2165771_2166032_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2166335_2166917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2166983_2167238_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2167224_2169849_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2169920_2170739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2170735_2171341_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2171378_2172512_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2174227_2174602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2174699_2175974_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2175977_2177555_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2178461_2179817_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2179813_2181448_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2181440_2182271_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2182288_2183233_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2183285_2184860_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2184907_2185267_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2185259_2185580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2185695_2186628_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2186730_2187687_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2187836_2189174_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2189178_2190435_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2190630_2191677_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2191734_2192103_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2192233_2193106_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2193182_2194085_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2195141_2196359_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2197632_2198583_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2213861	2278682	4103252	tRNA,protease,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2213861_2214812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2215382_2215595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2215612_2216344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2216378_2217020_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2217012_2217681_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2219893_2220670_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2220691_2221849_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2221845_2222277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2222273_2223071_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2223090_2223492_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2223558_2224530_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2224595_2225819_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2226046_2226997_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2227120_2229574_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2229762_2231067_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2231171_2231825_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2231827_2233138_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2233316_2233895_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2234006_2234207_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2234552_2235119_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2235202_2235406_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2235712_2236033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2236074_2236356_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2236430_2237687_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2238069_2238399_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2239969_2240791_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2240790_2241930_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2241936_2242833_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2242847_2244755_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2245114_2247727_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2247779_2250080_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2250076_2251285_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2251546_2251921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2251917_2252868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2252966_2254961_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2255020_2255986_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2255975_2258837_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2258839_2259346_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2259450_2260659_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2260660_2261599_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2261760_2262234_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2262230_2263181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2263291_2263732_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2263860_2265090_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2265128_2265950_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2266003_2267155_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2267246_2267735_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2270285_2272835_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2272905_2275479_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2275744_2275945_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2275976_2276138_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2276195_2276534_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2276682_2277633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2277731_2278682_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2349358	2412936	4103252	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2349358_2350309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2350610_2351087_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2351710_2353348_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2353378_2354692_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2354825_2355143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2355243_2356566_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2356562_2357513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2357611_2358562_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2359091_2360114_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2360142_2360973_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2360989_2362687_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2362751_2363828_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2363987_2364851_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2364881_2365451_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2365467_2366319_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2367376_2368258_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2368332_2369322_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2369384_2370335_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2370397_2371255_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2371314_2371803_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2373375_2374566_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2374562_2376149_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2376167_2377235_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2377339_2378884_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2379303_2380878_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2380994_2382002_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2381998_2382838_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2382842_2384480_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2384476_2385427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2385444_2385588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2385569_2386844_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2386873_2387164_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2387236_2388250_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2388269_2389532_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2389534_2390458_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2390454_2391948_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2391958_2392891_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2393072_2394398_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2394432_2395788_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2395848_2397369_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2397523_2398255_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2398352_2399663_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2399678_2400590_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2400580_2401174_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2401235_2401622_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2401633_2402104_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2402115_2402739_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2402759_2405507_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2411985_2412936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2684922	2725591	4103252	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684922_2685873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685983_2686166_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686265_2686862_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687045_2688137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688636_2689047_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2689105_2689435_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2689452_2691870_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691882_2692905_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692979_2693339_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693354_2693552_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693887_2694838_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695032_2695482_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695478_2696429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696539_2697988_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2698102_2698348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698487_2699438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699682_2700396_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700518_2700746_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701040_2701679_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701787_2702822_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702818_2703769_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704184_2704709_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704712_2704982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705180_2706242_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706325_2707960_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707961_2708765_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708793_2709753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709756_2711271_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711307_2712312_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712743_2713214_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713249_2713861_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713891_2714515_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714595_2716128_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2716162_2717380_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717447_2718479_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718475_2719645_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2719638_2720319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2720480_2721323_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721485_2722457_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722628_2723507_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723529_2724600_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724640_2725591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2781056	2853926	4103252	tRNA,transposase	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781056_2781473_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781583_2782216_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782244_2782688_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782709_2783801_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2783855_2784656_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784791_2785412_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2785551_2786025_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787164_2788115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788111_2795773_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796013_2800060_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800372_2800954_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800950_2802249_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802328_2803357_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803617_2804568_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804564_2805515_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805831_2806437_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2806490_2807804_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807878_2808349_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808348_2809137_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809147_2810800_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810887_2811838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812999_2813506_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813502_2814267_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814282_2814567_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814631_2815621_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815792_2816722_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816693_2817380_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817413_2817959_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818003_2819269_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819265_2820168_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821349_2822294_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822388_2823906_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823947_2825576_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825683_2826565_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829677_2830052_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830076_2830415_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830458_2832093_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832131_2833478_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2833585_2835007_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835076_2835661_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2835763_2836714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836848_2837955_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837965_2839063_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839207_2840413_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840419_2840941_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2840937_2841420_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841425_2841677_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841657_2842143_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842278_2845740_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845757_2846642_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846651_2847083_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847329_2847833_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847910_2849311_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849385_2850261_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850257_2851265_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851732_2852038_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852128_2852719_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852909_2853926_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2857069	2923881	4103252	protease,transposase	uncultured_Mediterranean_phage(28.57%)	50	NA	NA
WP_010929956.1|2857069_2858020_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858118_2859069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859065_2859860_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859891_2860596_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860670_2861471_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861467_2861875_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861871_2862513_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862505_2864506_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865766_2867098_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867094_2868045_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869751_2870018_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870725_2871064_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875618_2876221_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876317_2877607_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877664_2878396_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878392_2879196_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879192_2880281_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880277_2881207_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881355_2882501_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882522_2883473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2883490_2883649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2883803_2887625_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887781_2888450_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888454_2890128_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890146_2891466_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891470_2893786_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893841_2896010_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2896006_2901187_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901285_2901600_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901827_2902073_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902167_2902686_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902785_2903991_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904106_2905504_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905620_2906199_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906271_2907663_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907830_2908781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909061_2909682_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909678_2910092_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910088_2911132_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911187_2911376_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911385_2912150_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912240_2912897_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912988_2913747_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913772_2915374_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915574_2916579_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916679_2916943_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917060_2917837_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918427_2919378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921761_2922874_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2922930_2923881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	2954267	2993456	4103252	transposase	Planktothrix_phage(50.0%)	37	NA	NA
WP_005012067.1|2954267_2955218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2955235_2955385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2955338_2956235_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958512_2960738_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960902_2961991_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961947_2962601_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962648_2963446_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963977_2964928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2965008_2966157_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966213_2967164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967262_2967568_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967596_2968031_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968032_2969277_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969273_2969984_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969998_2970910_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971272_2971677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971673_2972132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2972138_2973047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2973043_2973910_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973896_2974724_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974734_2975862_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976939_2978178_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978219_2979482_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979488_2980241_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980292_2980478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980753_2981218_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981249_2981909_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982053_2984162_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984158_2985109_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985212_2985833_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2985936_2986677_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987811_2988936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988981_2989350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989591_2990542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991577_2992120_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992317_2992488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2992505_2993456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	3377903	3431644	4103252	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077069052.1|3377903_3378854_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3379258_3379903_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3379927_3380512_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3380612_3381230_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3381232_3382948_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3382944_3383253_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3383269_3383887_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3383931_3384234_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3384334_3385189_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3385376_3385601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3385770_3386043_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3386460_3386868_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3387237_3388032_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3388132_3389368_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3389436_3390453_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3390464_3391841_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3391837_3393034_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3393030_3394569_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3394565_3395825_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3397765_3398716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3399482_3400577_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3400569_3401904_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3401857_3402541_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3402566_3403730_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3403726_3404728_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3404727_3405600_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3405596_3406346_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3406342_3407134_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3407130_3408270_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3408545_3409331_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3409364_3410147_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3410150_3410540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3411679_3412543_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3412578_3413667_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3413663_3414614_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3414967_3417946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3418872_3419751_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3421699_3422650_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422646_3423114_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423156_3423927_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423947_3424748_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424758_3426168_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426262_3427048_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427287_3428304_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428411_3428804_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428941_3429622_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3429626_3430598_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430693_3431644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	3437799	3497099	4103252	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3437799_3439563_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439674_3440553_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440665_3441481_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441484_3441736_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441820_3442837_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443167_3443389_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445749_3446667_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447164_3448373_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448452_3450024_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450141_3451077_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451265_3452210_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3452777_3458495_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458500_3459628_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459683_3460310_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460581_3461598_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461693_3462404_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462400_3463390_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3463485_3465117_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465119_3465857_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466012_3466885_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3467234_3468374_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468370_3469030_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469101_3469734_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469763_3470282_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470292_3471402_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471448_3472303_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472304_3473207_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474429_3475380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477136_3478126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478301_3479090_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479086_3480118_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480136_3480700_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480755_3482276_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482539_3483244_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3483251_3483980_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484094_3484469_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484511_3485801_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485797_3486967_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486963_3487803_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487862_3488798_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488810_3489761_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489859_3490822_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490853_3491213_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491337_3492240_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492241_3494014_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494048_3494825_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496148_3497099_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011706	Bordetella pertussis strain H847 chromosome, complete genome	4103252	3512037	3570110	4103252	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512037_3512988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513116_3514250_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514293_3515199_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515201_3516902_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516898_3517819_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517826_3518804_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518862_3519897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521871_3522108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3522234_3523098_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523186_3524008_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524087_3524825_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524821_3525814_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3525966_3526590_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526634_3527783_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530106_3531057_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531397_3532348_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532446_3533397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533693_3534191_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534233_3536009_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3536016_3536883_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536889_3537624_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538793_3539588_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539877_3540468_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540501_3541830_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541904_3543050_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543161_3544160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544122_3544557_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546073_3546958_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546954_3548160_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548156_3549017_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549129_3550920_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3550960_3551605_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3551626_3551935_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552100_3553387_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554820_3555771_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557722_3558937_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559042_3560032_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560028_3560637_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560649_3561279_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561275_3561896_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561927_3562719_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3563570_3564026_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3564044_3564971_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565024_3566311_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567241_3568114_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568110_3569061_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569159_3570110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
