The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	27282	70036	4108479	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	77634	136108	4108479	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_077069213.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	164893	225404	4108479	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	233336	286924	4108479	protease,transposase,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997643.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	555309	614609	4108479	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574127_574286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584034_585255_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586551_587289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587291_588923_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589018_590008_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590004_590715_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	620764	674505	4108479	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656583_657843_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657839_659378_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659374_660571_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660567_661944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661955_662972_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663040_664276_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664376_665171_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665540_665948_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666365_666638_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666807_667032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667219_668074_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668174_668477_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668521_669139_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669155_669464_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669460_671176_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671178_671796_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671896_672481_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672505_673150_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673554_674505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	723443	763393	4108479	protease,transposase,tRNA,integrase	Pseudomonas_phage(33.33%)	30	720691:720709	740579:740597
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749739_749895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750948_751689_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751915_752863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754250_755201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|755218_755431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755394_756210_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756342_757782_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757795_758137_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758191_759847_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759998_761009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761141_761915_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762442_763393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	773320	820938	4108479	protease,transposase,tRNA,holin	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|773320_774271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774409_775162_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|775400_777125_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|777144_778404_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778418_779513_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|779509_781636_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|781648_782329_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782606_783980_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783981_785001_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785064_786036_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|786100_787051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787149_787992_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787991_788327_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788397_789816_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790095_791136_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791215_791467_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791577_792741_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793024_793879_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793875_794766_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794808_795720_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795746_796439_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796453_797434_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797446_799588_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799636_800605_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800595_801264_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801224_802160_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802156_803053_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803049_803772_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803762_803927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804100_804604_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804880_805996_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806138_806603_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806750_807290_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807311_808646_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808659_808965_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809389_809971_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|810052_811003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|812492_813398_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|813453_815058_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|815314_816820_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|816834_817299_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|817588_818539_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013038.1|818556_818745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|818701_819232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|819231_819543_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|819987_820938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	1005151	1099176	4108479	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1005151_1006102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006204_1006867_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006961_1007132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007484_1008486_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008488_1009685_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009705_1010509_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010589_1010886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010916_1011480_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011520_1012378_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012385_1013135_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013156_1014029_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014057_1014837_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014870_1015668_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018322_1018715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018708_1019569_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019572_1020535_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021311_1022001_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022861_1023812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024161_1025031_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025101_1025797_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025786_1026296_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026292_1027513_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027460_1028363_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029249_1030536_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030574_1031948_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031986_1032688_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032986_1033976_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034076_1034538_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034553_1035102_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035243_1036719_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036824_1037916_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037919_1038702_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038711_1039500_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040625_1041060_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041056_1042067_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042110_1043037_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043323_1043692_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1043744_1043891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1043908_1044859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044903_1047330_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047378_1048071_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048143_1049343_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049360_1050266_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050381_1051311_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051336_1052683_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052710_1053460_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053473_1054256_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054448_1055399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055460_1056570_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057082_1057919_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057988_1058954_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058950_1059901_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1059918_1060089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1060286_1060829_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061864_1062815_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063056_1063425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063470_1064595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065729_1066482_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066573_1067194_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067297_1068248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068244_1070353_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070497_1071157_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071188_1071653_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071928_1072114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072165_1072918_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072924_1074187_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074228_1075467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076544_1077672_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077682_1078510_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078496_1079363_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080729_1081134_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929584.1|1081225_1082176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1082193_1082358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1082545_1083457_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083471_1084182_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084178_1085423_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085424_1085859_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085887_1086193_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086291_1087242_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087298_1088453_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088527_1089478_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1089997_1090795_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090842_1091496_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091452_1092541_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092705_1094931_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097208_1098105_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1098058_1098208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1098225_1099176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	1129562	1200533	4108479	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1129562_1130513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130569_1131682_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134065_1135016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135606_1136383_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136500_1136764_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136864_1137869_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138069_1139671_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139696_1140455_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140546_1141203_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141293_1142058_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142067_1142256_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142311_1143355_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143351_1143765_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143761_1144382_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144662_1145613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145780_1147172_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147244_1147823_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147939_1149337_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149452_1150658_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150757_1151276_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151370_1151616_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151843_1152158_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152247_1157437_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157433_1159602_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159657_1161973_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161977_1163297_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163315_1164989_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1164993_1165662_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165818_1169640_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1169794_1169953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1169970_1170921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170942_1172088_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172236_1173166_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173162_1174251_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174247_1175051_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175047_1175779_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175836_1177126_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177222_1177825_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182378_1182717_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183424_1183691_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185397_1186348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186344_1187676_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188936_1190937_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190929_1191571_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191567_1191975_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191971_1192772_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192846_1193551_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193582_1194377_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194373_1195324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195422_1196373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196471_1196906_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1196988_1199325_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199516_1200533_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	1247927	1328802	4108479	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1247927_1248878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248874_1249825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250085_1251114_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251193_1252492_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252488_1253070_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253382_1257429_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257669_1265331_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265327_1266278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267417_1267891_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268030_1268651_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268786_1269587_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269641_1270733_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270754_1271198_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271226_1271859_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271969_1272386_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272378_1273071_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273177_1273552_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273628_1274438_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274533_1275478_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275516_1276488_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276578_1277016_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277074_1277956_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278959_1279820_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279852_1281235_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281231_1282251_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282623_1283118_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283125_1283866_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283946_1285551_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285590_1286379_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287581_1288670_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289550_1290363_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290375_1290684_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290801_1292532_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292533_1293679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293808_1294477_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294598_1295066_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295201_1296584_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296580_1297705_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297701_1300338_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_023996990.1|1300753_1301704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305450_1306062_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306284_1307745_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307841_1309434_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309787_1310045_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310046_1311387_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311482_1312172_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312184_1313615_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315339_1316161_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316171_1317743_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317771_1318749_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318775_1319579_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319575_1320370_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320377_1321613_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321605_1322040_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322789_1323740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324361_1326089_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326200_1327559_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1327615_1327834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1327851_1328802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	1448197	1500350	4108479	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1448197_1449148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1449165_1449318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1449314_1449668_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449680_1450043_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450084_1450510_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450712_1451969_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452167_1453148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453297_1454539_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454637_1455588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455596_1456292_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459113_1459713_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459723_1461889_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461912_1463697_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463696_1463786_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464480_1464753_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464752_1466819_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466815_1467766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467864_1468815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468930_1469263_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469259_1469946_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469932_1470892_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470933_1473294_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473293_1473926_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474027_1475368_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475414_1476770_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476895_1477540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477484_1477802_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478074_1478590_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478683_1478845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478860_1479616_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479954_1480161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480168_1480828_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481122_1483327_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483437_1484661_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484783_1485758_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485825_1487019_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487033_1487834_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487830_1489687_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489683_1490289_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490307_1491693_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492418_1493645_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493733_1494516_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494614_1495565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495591_1496365_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496376_1497618_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499399_1500350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	1544275	1604188	4108479	transposase,tRNA	Streptococcus_virus(12.5%)	52	NA	NA
WP_010930416.1|1544275_1544764_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544881_1545460_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545565_1545934_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546032_1546983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1546989_1548102_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548788_1549991_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550026_1550173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550194_1552855_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552867_1556272_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556939_1559165_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559211_1559538_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559588_1560197_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560295_1561246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561315_1562080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1562076_1562676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562779_1563631_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563690_1564317_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564313_1565264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565362_1566475_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566464_1567466_-	imelysin family protein	NA	NA	NA	NA	NA
WP_033476041.1|1567571_1569086_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_005012067.1|1569067_1570018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853587.1|1570128_1571433_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571544_1572105_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572372_1572927_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573382_1573598_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573852_1576450_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576446_1577634_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1578293_1578908_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1578996_1580124_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580135_1581041_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581933_1582884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583065_1583818_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583886_1584546_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584542_1585271_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585283_1587563_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587587_1587791_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587832_1588465_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588600_1589518_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589514_1590228_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590465_1591236_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591240_1591840_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592084_1593575_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593633_1593918_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1594055_1594211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1594483_1595410_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595546_1596287_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596453_1597830_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598011_1598917_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600568_1602371_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1602497_1603139_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603237_1604188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	1649360	1704951	4108479	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649360_1650311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650369_1651143_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651135_1652692_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652688_1653639_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654965_1655568_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655807_1656509_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656502_1657285_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657469_1658420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658518_1659256_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659445_1660204_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660250_1661240_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661417_1662386_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663925_1664894_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664902_1665844_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666317_1667328_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667318_1668833_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668829_1670176_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1670178_1671213_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671262_1672888_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673440_1674391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674495_1675443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675496_1677311_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677303_1677978_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678107_1681182_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681195_1681495_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681809_1682433_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1682676_1683546_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683523_1684468_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684553_1685480_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685592_1686372_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686362_1687559_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687589_1688540_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688761_1689451_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689515_1690271_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690322_1691315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691324_1692278_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692393_1693356_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694757_1695186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695182_1696133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1696426_1697164_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697587_1698775_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1698778_1699159_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700878_1701850_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701863_1702577_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702581_1703499_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703605_1703902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704000_1704951_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	1937715	2007367	4108479	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937715_1940373_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940450_1941653_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941649_1942162_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942284_1942722_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1942998_1943949_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944047_1944998_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1945251_1947057_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1947170_1947338_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947401_1947638_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1948006_1949206_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1950721_1951672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952123_1953125_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953297_1954155_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954151_1955414_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955514_1955889_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1955961_1957149_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957233_1958004_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958117_1958882_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958832_1960134_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1960130_1960937_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1962681_1963653_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963809_1964322_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964480_1965455_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966455_1967250_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967275_1968082_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968192_1968783_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968793_1969972_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970074_1970449_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970701_1972033_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972099_1975330_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976820_1977567_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977651_1978113_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978150_1979209_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979171_1981001_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981040_1981613_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983037_1983859_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984177_1985500_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985859_1986495_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1986454_1987405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988275_1989148_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989225_1990365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990723_1991980_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991985_1992513_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992517_1993336_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993335_1994058_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994079_1994394_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994411_1995560_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995590_1996466_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996462_1997782_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997854_1999051_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999061_2000549_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003143_2004043_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004180_2005146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005244_2006195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006416_2007367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	2018863	2068259	4108479	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018863_2019814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020951_2021248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021422_2022775_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022917_2023934_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025913_2026927_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2027013_2027919_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028075_2028420_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028577_2029036_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029049_2031266_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031262_2032324_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032352_2033327_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033278_2034097_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034109_2034718_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2034892_2035288_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035306_2036746_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036774_2037122_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037140_2038091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038743_2039694_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039777_2041595_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041668_2042316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042328_2043258_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043427_2043892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044139_2044820_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044868_2046560_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046575_2047127_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047123_2047495_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047607_2048444_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048454_2048979_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049076_2049256_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049385_2050360_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050490_2050847_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050836_2051712_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051810_2052695_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052716_2054012_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054960_2055611_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2055698_2057219_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057476_2059342_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060387_2061338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2061355_2061496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2062310_2062670_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062657_2064094_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064090_2064744_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2064740_2065934_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066037_2067312_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067308_2068259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	2079463	2120154	4108479	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2079463_2080414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080512_2081463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081422_2081836_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082120_2082420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2082829_2085112_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2085797_2087828_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087847_2088060_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088337_2088877_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2088990_2090286_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090362_2091520_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091703_2092603_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092621_2093926_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093891_2094998_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095085_2095322_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095460_2096531_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096534_2097890_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2097916_2099077_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099079_2099718_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2099719_2101006_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2101064_2102360_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102366_2102873_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102869_2104018_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104045_2104471_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104793_2107676_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107768_2108524_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109289_2110639_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110737_2111688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111786_2112737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112810_2113284_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113309_2114518_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114514_2115288_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115287_2115911_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116076_2116337_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116640_2117222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117288_2117543_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117529_2120154_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	2147937	2213486	4108479	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2147937_2148888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2149088_2149898_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2150022_2150973_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150969_2151863_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151987_2152182_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152181_2152523_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152532_2154395_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154524_2155037_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155039_2155363_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155364_2155775_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155812_2157024_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157041_2157554_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157769_2158261_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158513_2160550_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160627_2161830_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2161958_2162609_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2164166_2165117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165687_2165900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165917_2166649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166683_2167325_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2167317_2167986_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170198_2170975_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2170996_2172154_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172150_2172582_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2172578_2173382_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2173395_2173797_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173863_2174835_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174900_2176124_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176351_2177302_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177425_2179879_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180067_2181372_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181476_2182130_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182132_2183443_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2183639_2184200_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184311_2184512_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184857_2185424_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185507_2185711_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186017_2186338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186379_2186661_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186735_2187992_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188374_2188704_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190274_2191096_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191095_2192235_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192241_2193138_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2193134_2195060_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195419_2198032_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198084_2200385_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200381_2201590_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2201851_2202226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2202222_2203173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203271_2205266_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205325_2206291_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206280_2209142_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209144_2209651_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209755_2210964_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210965_2211904_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212065_2212539_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212535_2213486_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	2506084	2564328	4108479	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2506084_2507035_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2507514_2508171_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2508185_2509853_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2509855_2510485_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2510696_2511791_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2511935_2512748_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2512751_2514455_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2514505_2515636_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2515822_2516899_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2516980_2517631_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2517645_2519049_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2519332_2520151_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2520147_2520852_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2521751_2522867_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2522900_2523275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2523297_2524455_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2524467_2524701_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2525335_2528305_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2528319_2528529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2528680_2529310_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2529306_2531397_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2531420_2532101_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2532097_2532658_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2532664_2533762_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2533914_2534508_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2534504_2535797_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2535810_2536353_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2536362_2537199_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2537232_2538294_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2538335_2539388_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2539403_2539706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2539847_2540798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2540815_2540980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2540976_2542671_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2542667_2543753_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2543800_2544700_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2544710_2545355_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2546376_2549619_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2549629_2550784_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2551010_2551973_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2552071_2553022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2553120_2554071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2554080_2554770_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2554829_2555267_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2555312_2556206_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2556253_2557426_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2557422_2558577_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2558773_2559124_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2559113_2559548_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2559564_2560515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2560662_2561130_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2561110_2562268_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2562333_2563260_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2563377_2564328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	2606607	2673107	4108479	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2606607_2607558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2607927_2608500_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2608502_2609513_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2609505_2610006_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2610016_2610358_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2610369_2611161_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2611177_2611447_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2611469_2612258_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2612304_2613321_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2613537_2614980_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2615158_2616778_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2616898_2618719_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2618797_2620330_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2620363_2622010_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2622079_2623102_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2623119_2624253_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2624255_2624945_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2624944_2625730_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2625773_2626538_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2626576_2627998_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2628063_2628768_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2628815_2629235_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2629247_2629655_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2629838_2630549_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2630675_2630966_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2630983_2631466_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2635971_2637126_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2637431_2638448_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2638694_2639483_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2639549_2640230_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2640226_2640997_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2641095_2642046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2642101_2643019_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2643029_2644208_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2644227_2645223_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2646811_2647420_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2647407_2648448_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2648465_2649428_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2649424_2650618_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2650614_2651412_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2651437_2652424_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2652442_2654482_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2654683_2655364_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2655377_2656289_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2656285_2656864_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2657002_2657908_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2657915_2661335_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2661322_2663923_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2664878_2665511_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2665904_2666663_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2666659_2667862_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2668049_2669000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2669907_2671053_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2671039_2671795_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2671911_2672091_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2672156_2673107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	2856559	3008207	4108479	protease,transposase,tRNA,holin	uncultured_Mediterranean_phage(15.79%)	120	NA	NA
WP_010929956.1|2856559_2857510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857608_2858490_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858567_2859947_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2859985_2860831_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2860846_2861191_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861193_2861730_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2861902_2862478_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862580_2863318_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863385_2865023_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865130_2865886_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865873_2866836_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2866937_2867738_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867799_2869875_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870039_2872415_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2872495_2873851_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875329_2876052_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876106_2877090_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877219_2878170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878166_2879069_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879156_2879915_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879927_2881019_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881116_2882544_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882773_2883988_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884033_2886904_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889314_2889803_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889928_2892625_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892779_2895062_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2895235_2895859_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_077069214.1|2895957_2896908_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896954_2897509_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897576_2898422_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898491_2899460_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2899459_2900323_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2903155_2907082_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907817_2911048_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911329_2912157_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912190_2912886_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912878_2914159_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914168_2915146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915127_2916828_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916930_2918034_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918064_2918820_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918826_2920347_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920389_2920692_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920688_2921321_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921399_2923265_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923261_2924056_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924084_2925200_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926104_2926983_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926982_2927807_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927974_2928925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2929023_2929974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2930186_2933036_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2933017_2933746_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2933886_2935350_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2935346_2935718_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2935735_2937049_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2937085_2937544_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2937498_2937639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2937656_2938607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2938603_2939617_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2939756_2940743_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2941101_2941809_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2942389_2943340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2943491_2944094_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2944112_2944745_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2944789_2945041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2944982_2946869_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2946887_2947730_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2947726_2949085_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2949305_2950100_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2950330_2951824_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2952059_2954141_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2954335_2955376_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2955510_2956527_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2956548_2957406_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2957450_2958227_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2958439_2958577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2958594_2959545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2959571_2960036_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2961242_2963531_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2963647_2964520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2964562_2965717_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2965751_2966582_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2966665_2968210_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2968252_2968612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2968613_2969027_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2969067_2969385_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2969469_2970186_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2970449_2971871_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2971937_2974685_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930525.1|2975017_2976034_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2976369_2977011_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2977101_2978538_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2978695_2979769_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2979765_2980902_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2981046_2981391_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2981457_2983338_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2983387_2984323_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2984655_2985672_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2986609_2988037_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2988033_2989056_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2989045_2989519_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2989659_2990547_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2990543_2992187_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2992183_2993233_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_054604396.1|2994021_2995038_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2995137_2995770_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2995778_2996168_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2996220_2997273_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2998136_2999843_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2999916_3000417_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3000431_3002489_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3002515_3002809_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3002910_3003858_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3003870_3004746_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3004866_3005427_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3005461_3005785_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3006220_3006958_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3007256_3008207_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	3016417	3078572	4108479	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3016417_3017551_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3017654_3018296_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3018450_3020799_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3020795_3021734_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3021759_3022950_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3022946_3023720_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3023749_3024943_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3025060_3026071_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3026088_3028125_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3028319_3029060_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3029158_3030109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3030151_3031327_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3031548_3033339_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3033351_3035013_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3035025_3037731_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3038023_3039778_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3039774_3040401_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3040397_3041249_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3041324_3043439_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3043625_3044240_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3044385_3044637_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3044706_3046089_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3046085_3049265_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3050072_3050990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3051041_3051773_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3051832_3052405_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3053913_3054930_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3055067_3056117_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3056221_3057172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3057267_3057993_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3058203_3058584_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3058889_3059762_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3059769_3060150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3060303_3061578_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3063065_3063974_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3064771_3065836_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3067672_3068674_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3068896_3069538_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3069620_3071447_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3071690_3072620_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3072619_3073369_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3073440_3074355_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3074374_3075520_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3075580_3076492_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3076572_3077523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3077621_3078572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	3097994	3153124	4108479	transposase	Bacillus_phage(28.57%)	48	NA	NA
WP_005012808.1|3097994_3098945_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099074_3099467_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099743_3100655_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100779_3101754_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101750_3102701_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3102799_3103885_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3103982_3104393_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3105008_3106922_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3107057_3109670_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3109671_3110406_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3110569_3111751_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3111747_3111960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3111956_3112937_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3112982_3113810_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3113959_3115774_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3115828_3116212_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3116208_3117159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117271_3117523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118028_3119147_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119266_3119479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119638_3119860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119912_3120863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122039_3123410_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123442_3124234_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124246_3125302_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125327_3126203_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126308_3126557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126591_3128046_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128042_3128564_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128592_3129945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130168_3133057_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135201_3136503_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3136517_3137234_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137515_3138196_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3138207_3138375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3138483_3138630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3138723_3139383_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139781_3141614_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141610_3142561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3143724_3145440_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3145450_3145942_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3146014_3147031_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3147198_3147978_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3147996_3148524_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3148817_3149087_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3149177_3151337_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3151457_3152177_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3152173_3153124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	3234184	3307346	4108479	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3234184_3235135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3235131_3236151_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3236160_3238869_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3239016_3239673_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3239771_3240722_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3240869_3241763_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3241962_3243657_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3243691_3244618_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3244686_3245784_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3245802_3246666_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3246677_3247460_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3247456_3248575_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3248571_3250104_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3250144_3251152_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3251296_3252019_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3252034_3253057_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3253373_3254108_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3254192_3255938_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3255934_3256687_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3256731_3257688_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3257776_3258343_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3258350_3259211_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3259240_3259969_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3260000_3260684_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3261521_3262436_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3262500_3263409_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3263499_3264924_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3264925_3266248_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3266244_3268383_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3268460_3273581_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3273681_3273990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3274059_3274617_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3274632_3276114_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3278284_3279622_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3279656_3281654_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3281671_3283720_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3283850_3284717_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3284985_3285951_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3286065_3287214_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3287638_3287950_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3287983_3288244_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3288393_3289527_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3289597_3290734_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3290899_3291694_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3291756_3292200_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3292315_3293266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3293367_3293796_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3293868_3296064_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3296285_3297236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3297195_3297720_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3297851_3298823_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3298942_3301387_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3301402_3301993_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3302236_3303187_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3303344_3304610_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3304643_3305741_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_010931070.1|3306395_3307346_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	3318633	3418746	4108479	tRNA,protease,transposase,tail,terminase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3318633_3319584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3320315_3320693_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3320677_3321379_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3321522_3322215_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3322214_3323318_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3323427_3325800_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3325796_3327356_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3327380_3328178_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3328209_3329355_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3329459_3330902_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3330904_3332134_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3334271_3335222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3336351_3336909_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3336884_3337235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3337403_3338198_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3338194_3339244_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3339243_3339933_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3340019_3340517_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3340548_3341865_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3341881_3342856_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3342892_3343351_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3343350_3344031_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3344033_3344462_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3344514_3346245_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3346310_3346883_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3346863_3347550_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3347905_3348577_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3348905_3349127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3349126_3349408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3349404_3349920_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3349919_3350471_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3350449_3350692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3350696_3351509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3351508_3351772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3351812_3352010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3351990_3352407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3352411_3356368_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3356360_3356750_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3356746_3357280_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3357347_3357707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3357716_3360329_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3360354_3360645_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3360662_3360992_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3361001_3361520_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3361774_3362275_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3362282_3362705_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3362701_3363100_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3363096_3363492_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3363491_3363692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3363693_3364176_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3364238_3364490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3365164_3366115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3366543_3367146_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3367268_3367511_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3367516_3368572_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3368600_3370019_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3370021_3371299_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3371285_3371771_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3372410_3373361_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3373378_3373600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3373617_3374307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3374299_3374551_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3375105_3375717_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3375788_3375995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3376246_3377197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3377295_3378369_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3378536_3379331_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3379370_3379895_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3379887_3381630_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3381839_3382598_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3382600_3383308_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3383324_3384206_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3384216_3384975_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3384943_3385699_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3385768_3387187_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3387208_3387859_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3387992_3388328_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3388416_3389367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3389443_3391264_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3391268_3392342_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3392464_3393433_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3393506_3394418_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3394436_3395009_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3395089_3395638_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3395637_3397227_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3397296_3397536_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3397576_3398602_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3398667_3399849_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3399945_3400398_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3400407_3401748_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3402064_3403102_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3403483_3403843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3403926_3404868_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3404942_3405893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3406186_3407281_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3407362_3408244_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3408265_3409105_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3409180_3410698_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3410794_3411895_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3411911_3412334_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3412356_3412569_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3412615_3413536_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3413718_3414468_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3414470_3414800_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3415006_3416440_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3416451_3416835_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3416896_3417697_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3417795_3418746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	3579413	3626262	4108479	transposase	Lake_Baikal_phage(25.0%)	39	NA	NA
WP_010929591.1|3579413_3580364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3580480_3581548_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3581623_3584752_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3585259_3586225_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3586227_3586899_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3587055_3588015_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3588022_3588685_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3588681_3589632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3589730_3590681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3590802_3592056_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3592033_3592996_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3593127_3593622_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3593621_3594854_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3595599_3595881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3595867_3596854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077069216.1|3596997_3597402_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3597543_3600930_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3600960_3602424_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3602444_3604061_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3604146_3604806_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3604835_3605276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3605786_3605990_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3606165_3607071_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3607169_3608120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3608218_3609169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3610950_3612144_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3612209_3613238_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3613264_3614437_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3614562_3615540_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3615550_3616522_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3616588_3617374_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3617366_3618599_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3618794_3619550_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3619660_3620179_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3621967_3623368_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3623467_3623812_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3623900_3624371_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3624781_3625180_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3625311_3626262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011704	Bordetella pertussis strain H787 chromosome, complete genome	4108479	4030650	4084082	4108479	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4030650_4031601_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031770_4032997_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033196_4034063_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034055_4035018_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035118_4036069_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036167_4037118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037216_4038167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038163_4039657_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039653_4042761_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042757_4045826_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045822_4047073_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4047253_4048015_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4048047_4048698_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4048700_4049540_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049780_4050524_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4050606_4050954_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051051_4051894_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051938_4052826_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052852_4053041_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053138_4054596_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054582_4056109_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056127_4056595_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4056594_4057617_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4057737_4058457_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4058532_4059633_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059634_4060825_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060944_4061961_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062279_4062951_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062947_4063856_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064067_4064715_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4068566_4069643_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069653_4070463_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070552_4071326_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4071326_4071491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4071508_4072459_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4072347_4073370_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4073359_4074514_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4074553_4075966_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4076090_4076957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4076958_4077783_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4077779_4078541_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4078621_4079308_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4079481_4080489_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4080485_4081265_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4081322_4082585_+	CoA transferase	NA	NA	NA	NA	NA
WP_077069217.1|4083131_4084082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
