The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	27282	70036	4106294	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905499.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	77634	136108	4106294	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	164892	225400	4106294	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	49	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_102990607.1|169077_170544_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	6.0e-44
WP_010929661.1|170540_171170_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171218_172826_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172850_173534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173615_174092_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174298_175249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176364_176892_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176983_177799_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177859_178594_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178631_180710_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180959_181232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181333_182419_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182422_184327_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929670.1|188057_188621_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188628_189051_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189078_189498_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189526_189973_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190099_190597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190751_193022_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193097_194303_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194401_195352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195454_196090_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196086_196980_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197374_198475_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198556_198931_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198990_201855_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|201999_202740_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202809_204021_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204049_205018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205631_206582_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206738_207062_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207166_208207_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208212_208992_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209037_209334_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209359_209635_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209691_210336_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210335_211022_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211220_212003_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212053_212779_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212810_214160_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214271_215204_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215661_218457_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219050_221894_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222064_222784_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222822_223371_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223525_224425_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224449_225400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	233332	286919	4106294	tRNA,protease,transposase	Bacillus_phage(28.57%)	46	NA	NA
WP_005012067.1|233332_234283_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234369_235320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235316_236267_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236365_237163_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238112_238523_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239544_240288_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240331_241375_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241545_243648_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245058_246015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246033_246525_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246521_247877_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247877_248576_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248572_249274_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249526_250576_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250681_251623_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814332.1|253594_254233_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254375_255761_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255691_256228_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256379_257771_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257787_258768_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258903_259887_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259951_260851_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260957_262712_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262719_263844_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263857_264838_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265568_266519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267078_267624_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267749_269327_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269342_270497_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270510_270636_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270632_272384_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272380_274060_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274122_274671_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275813_276092_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277135_278086_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278072_278288_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278363_278525_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279191_279641_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279650_280262_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280420_281269_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281294_282677_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282741_283383_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283522_283981_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284005_284782_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284835_285972_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285968_286919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	468492	590768	4106294	tRNA,transposase	Acinetobacter_phage(22.22%)	104	NA	NA
WP_010929956.1|468492_469443_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|470165_471440_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|471526_472609_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|472619_473432_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|473468_473795_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|473799_474360_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|474600_475593_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|475611_476607_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|476622_477999_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|477991_480373_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|480389_480779_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|480905_481136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|481240_482191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|482289_483240_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|483236_484109_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|485039_486326_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|486379_487306_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|487324_487780_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|488631_489423_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|489454_490075_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|490071_490701_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|490713_491322_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|491318_492308_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|492413_493628_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|495579_496530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|497963_499250_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|499415_499724_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|499745_500390_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|500430_502221_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|502333_503194_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|503190_504396_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|504392_505277_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|506793_507228_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|507190_508189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|508300_509446_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|509520_510849_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|510882_511473_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|511762_512557_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|513726_514461_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|514467_515334_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|515341_517117_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|517159_517657_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|517953_518904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|519002_519953_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|520293_521244_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|523567_524716_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|524760_525384_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|525536_526529_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|526525_527263_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|527342_528164_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|528252_529116_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|529242_529479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|531453_532488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|532546_533524_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|533531_534452_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|534448_536149_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|536151_537057_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|537100_538234_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|538362_539313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|539411_541481_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|541523_543626_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|543932_545009_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_003815341.1|546150_546573_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|546582_547983_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|548025_548931_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|549029_550571_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|550605_551145_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|551157_551628_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|551765_552008_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|552124_553006_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|553078_553399_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|554250_555201_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|556524_557301_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|557335_559108_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|559109_560012_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|560136_560496_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|560527_561490_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|561588_562539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|562551_563487_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|563546_564386_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|564382_565552_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|565548_566838_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|566880_567255_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|567369_568098_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|568105_568810_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|569073_570594_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|570649_571213_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|571231_572263_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|572259_573048_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|573223_574213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|575969_576920_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|578142_579045_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|579046_579901_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|579947_581057_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|581067_581586_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|581615_582248_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|582319_582979_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|582975_584115_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|584464_585337_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|585492_586230_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|586232_587864_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|587959_588949_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|588945_589656_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|589751_590768_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	608512	653584	4106294	tRNA,transposase	Escherichia_phage(20.0%)	37	NA	NA
WP_010929632.1|608512_609529_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|609613_609865_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|609868_610684_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|610796_611675_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|611786_613550_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|613665_615006_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|616075_617500_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|617499_618201_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|619705_620656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|620751_621723_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|621727_622408_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|622545_622938_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|623045_624062_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|624301_625087_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|625181_626591_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|626601_627402_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|627422_628193_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|628235_628703_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|628699_629650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|631598_632477_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|633403_636382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|636735_637686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|637682_638771_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|638806_639670_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|640809_641199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|641202_641985_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|642018_642804_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|643079_644219_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|644215_645007_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|645003_645753_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|645749_646622_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|646621_647623_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|647619_648783_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|648808_649492_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|649445_650780_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|650772_651867_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|652633_653584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	672495	749804	4106294	tRNA,protease,transposase,integrase	Bacillus_phage(20.0%)	59	719632:719650	739520:739538
WP_023995489.1|672495_673446_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|673544_675020_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|676607_677495_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|677497_678439_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|678484_680050_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|681827_683153_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|683335_684793_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|684756_685254_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|685284_686256_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|686308_686740_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|686869_687538_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|688266_689370_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|689475_690750_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|690761_691787_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|691788_693159_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|693159_694296_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|694342_696268_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|696264_697386_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|697382_698537_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|698533_699664_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|699671_701237_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|701243_702626_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|702904_703516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|703607_705023_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|705040_705751_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|705747_707070_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|707149_709111_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|709236_710550_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|710658_711957_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|712139_713048_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|713057_713267_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|713278_714958_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|715059_716013_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|716103_716931_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|716929_718816_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|718812_719412_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|719460_720360_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
719632:719650	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|720568_721519_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|721641_722256_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|722384_722981_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|722977_723760_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|723832_724924_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|725203_726331_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|726672_727719_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|728229_730986_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|730987_733939_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|733954_735166_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|735162_735363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|735349_736300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|736316_736811_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|736814_737072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|737615_738527_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|738608_738893_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_010929969.1|739676_740627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
739520:739538	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|741045_743610_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|743654_745508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|745840_747412_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|748680_748836_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|748853_749804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	1004091	1098128	4106294	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1004091_1005042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1005144_1005807_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1005901_1006072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1006424_1007426_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1007428_1008625_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1008645_1009449_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1009529_1009826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1009856_1010420_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1010460_1011318_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1011325_1012075_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1012096_1012969_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1012997_1013777_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1013810_1014608_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1017262_1017655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1017648_1018509_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1018512_1019475_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1020251_1020941_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1021801_1022752_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1023101_1023971_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1024041_1024737_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1024726_1025236_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1025232_1026453_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1026400_1027303_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1028189_1029476_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1029514_1030888_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1030926_1031628_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1031926_1032916_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1033016_1033478_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1033493_1034042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1034183_1035659_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1035764_1036856_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1036859_1037642_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1037651_1038440_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1039565_1040000_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1039996_1041007_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1041050_1041977_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1042263_1042632_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1042684_1042831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1042848_1043799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1043843_1046270_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1046318_1047011_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1047083_1048283_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1048300_1049206_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1049321_1050251_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1050276_1051623_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1051635_1052400_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1052413_1053196_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1053388_1054339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1054400_1055510_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1056022_1056859_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1056985_1057894_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1057890_1058841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1058858_1059029_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1059226_1059769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1060804_1061755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1061996_1062365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1062410_1063535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1064669_1065410_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1065513_1066134_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076879634.1|1066237_1067188_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1067184_1069293_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1069437_1070097_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1070128_1070593_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1070868_1071054_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1071105_1071858_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1071864_1073127_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1073168_1074407_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1075484_1076612_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1076622_1077450_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1077436_1078303_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1079669_1080074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1080165_1081116_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1081133_1081298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1081485_1082397_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1082411_1083122_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1083118_1084363_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1084364_1084799_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1084827_1085133_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1085231_1086182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1086238_1087387_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1087467_1088418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1088949_1089747_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1089794_1090448_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1090404_1091493_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1091657_1093883_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1096160_1097057_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1097010_1097160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1097177_1098128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	1128514	1198436	4106294	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1128514_1129465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1129521_1130634_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1133017_1133968_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1134558_1135335_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1135452_1135716_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1135816_1136821_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1137021_1138623_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1138648_1139407_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1139498_1140155_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1140245_1141010_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1141019_1141208_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1141263_1142307_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1142303_1142717_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1142713_1143334_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1143614_1144565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1144732_1146124_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1146196_1146775_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1146891_1148289_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1148404_1149610_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1149709_1150228_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1150322_1150568_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1150795_1151110_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1151208_1156389_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1156385_1158554_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1158609_1160925_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1160929_1162249_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1162267_1163941_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1163945_1164614_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1164770_1168592_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1168746_1168905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1168922_1169873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1169894_1171040_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1171188_1172118_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1172114_1173203_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1173199_1174003_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1173999_1174731_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1174788_1176078_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1176174_1176777_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1181330_1181669_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1182376_1182643_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1184349_1185300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1185296_1186628_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1187888_1189889_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1189881_1190523_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1190519_1190927_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1190923_1191724_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1191798_1192503_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1192534_1193329_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1193325_1194276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1194374_1194809_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1194891_1197228_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010931363.1|1197419_1198436_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	1239507	1367471	4106294	tRNA,transposase	Bacillus_virus(15.38%)	106	NA	NA
WP_010929591.1|1239507_1240458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1240545_1242198_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1242208_1242997_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1242996_1243467_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1243541_1244855_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1244908_1245514_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010927663.1|1245830_1246781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1246777_1247728_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1247988_1249017_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1249096_1250395_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1250391_1250973_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1251285_1255332_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_005012067.1|1263229_1264180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1265319_1265793_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1265932_1266553_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1266688_1267489_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1267543_1268635_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1268656_1269100_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1269128_1269761_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1269871_1270288_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1270280_1270973_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1271079_1271454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1271530_1272340_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1272435_1273380_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1273418_1274390_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1274480_1274918_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1274976_1275858_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1276861_1277722_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1277754_1279137_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1279133_1280153_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1280525_1281020_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1281027_1281768_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1281848_1283453_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1283492_1284281_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1284406_1286572_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1287452_1288265_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1288277_1288586_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1288703_1290434_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1290435_1291638_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1291710_1292379_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1292500_1292968_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1293103_1294486_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1294482_1295607_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1295603_1298240_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1298655_1299606_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1303352_1303964_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1304186_1305647_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1305743_1307336_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_162291322.1|1307689_1307947_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1307948_1309289_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1309384_1310074_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1310086_1311517_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1313241_1314063_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1314073_1315645_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1315673_1316651_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1316677_1317481_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1317477_1318272_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1318279_1319515_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1319528_1319942_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1320691_1321642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1321740_1322691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1323312_1325040_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1325151_1326510_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1326566_1326785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1326802_1327753_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1327793_1328864_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1328886_1329765_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1329936_1330908_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1331070_1331913_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1332074_1332755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1332748_1333918_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1333914_1334946_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1335013_1336231_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1336265_1337798_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1337878_1338502_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1338532_1339144_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1339179_1339650_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1340081_1341086_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1341122_1342637_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1342640_1343600_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1343628_1344432_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1344433_1346068_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1346151_1347213_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1347411_1347681_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1347684_1348209_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_005012067.1|1348624_1349575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1349571_1350606_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1350714_1351353_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1351647_1351875_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1351997_1352711_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931070.1|1352955_1353906_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1354045_1354291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1354405_1355854_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1355964_1356915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|1356911_1357361_-	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_010929584.1|1357555_1358506_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812834.1|1358841_1359039_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_003812832.1|1359054_1359414_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_010926359.1|1359488_1360511_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_010931007.1|1360523_1362941_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_023852697.1|1362958_1363288_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_003812822.1|1363346_1363757_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931005.1|1364256_1365348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|1365531_1366128_+	lipoprotein	NA	NA	NA	NA	NA
WP_004567479.1|1366227_1366410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|1366520_1367471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	1447148	1500327	4106294	tRNA,transposase	Salmonella_phage(22.22%)	46	NA	NA
WP_005013747.1|1447148_1448099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1448116_1448269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1448265_1448619_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1448631_1448994_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1449035_1449461_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1449663_1450920_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1451118_1452099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1452248_1453490_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1453588_1454539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1454547_1455243_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1458063_1458663_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1458673_1460839_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1460862_1462647_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1462646_1462736_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1463430_1463703_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1463702_1465769_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1465765_1466716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1466831_1467164_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1467160_1467847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1467833_1468793_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1468825_1471195_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1471194_1471827_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1471928_1473269_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1473315_1474671_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1474961_1475198_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1475385_1475703_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1475975_1476491_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1476761_1477517_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1477855_1478062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1478069_1478729_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1479023_1481228_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1481338_1482562_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1482684_1483659_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1483726_1484920_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1484934_1485735_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1485731_1487588_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1487584_1488190_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1488208_1489594_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1490319_1491546_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1491634_1492417_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1492515_1493466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1493492_1494266_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1494277_1495519_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1497300_1498251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1498282_1499380_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_010931070.1|1499376_1500327_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	1542176	1610261	4106294	tRNA,transposase	Streptococcus_virus(11.11%)	58	NA	NA
WP_010930416.1|1542176_1542665_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1542782_1543361_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1543466_1543835_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1543933_1544884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1544890_1546003_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1546689_1547892_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1548095_1550756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1550768_1554173_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1554840_1557066_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1557112_1557439_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1557489_1558098_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1558196_1559147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1559216_1559981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1559977_1560514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1560680_1561532_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1561591_1562218_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1562214_1563165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1563263_1564376_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1564365_1565367_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1565472_1566984_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1566980_1568285_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1568396_1568957_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1569224_1569779_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1570234_1570450_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1570704_1573302_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1573298_1574486_+	cupin	NA	NA	NA	NA	NA
WP_062826574.1|1574754_1574979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248658.1|1575143_1575758_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1575846_1576968_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1576985_1577891_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1578783_1579734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1579915_1580668_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1580736_1581396_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1581392_1582121_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1582133_1584413_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1584437_1584641_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1584682_1585315_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1585450_1586368_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1586364_1587078_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1587315_1588086_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1588090_1588690_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1588934_1590425_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1590483_1590768_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1591333_1592260_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1592396_1593137_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1593303_1594680_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1594861_1595767_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1597418_1599221_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1599338_1599989_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1600087_1601038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1601059_1602280_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1602465_1603878_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1603941_1605009_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1605008_1606496_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1606505_1607450_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1607609_1608308_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1608385_1609291_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1609310_1610261_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	1646210	1701748	4106294	transposase	Brazilian_cedratvirus(25.0%)	46	NA	NA
WP_005013747.1|1646210_1647161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1647219_1647993_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1647985_1649542_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1649538_1650489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1651815_1652418_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1652657_1653359_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1653352_1654135_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1654319_1655270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1655368_1656106_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1656295_1657054_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1657100_1658090_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1658267_1659236_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1660775_1661744_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930478.1|1663166_1664177_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1664167_1665682_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1665678_1667025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1667027_1668062_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1668111_1669737_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1670289_1671240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1671344_1672292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1672345_1674160_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1674152_1674827_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_077084135.1|1674956_1677980_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1677993_1678293_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1678607_1679231_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1679474_1680344_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1680321_1681266_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1681351_1682278_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1682390_1683170_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1683160_1684357_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1684387_1685338_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1685559_1686249_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1686313_1687069_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1687120_1688113_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1688122_1689076_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1689191_1690154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1691554_1691983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1691979_1692930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1693223_1693946_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1694384_1695572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1695575_1695926_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1697675_1698647_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1698660_1699374_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1699378_1700296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1700402_1700699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1700797_1701748_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	1934508	2004160	4106294	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1934508_1937166_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1937243_1938446_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1938442_1938955_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1939077_1939515_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1939791_1940742_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1940840_1941791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1941954_1943850_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1943963_1944131_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1944194_1944431_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1944799_1945951_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1947514_1948465_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1948916_1949918_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1950090_1950948_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1950944_1952207_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1952307_1952682_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1952754_1953942_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1954026_1954797_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1954910_1955675_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1955625_1956927_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1956923_1957730_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1959474_1960446_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1960602_1961115_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1961273_1962248_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1963248_1964043_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1964068_1964875_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1964985_1965576_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1965586_1966765_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1966867_1967242_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1967494_1968826_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1968892_1972123_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1973613_1974360_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1974444_1974906_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1974943_1976002_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1975964_1977794_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1977833_1978406_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1979830_1980652_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1980970_1982293_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1982652_1983288_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1983247_1984198_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1985068_1985941_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1986018_1987158_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1987516_1988773_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1988778_1989306_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1989310_1990129_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1990128_1990851_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1990872_1991187_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1991204_1992353_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1992383_1993259_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1993255_1994575_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1994647_1995844_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1995854_1997342_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1999936_2000836_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2000973_2001939_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2002037_2002988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2003209_2004160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2015655	2066099	4106294	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2015655_2016606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2017743_2018040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2018214_2019567_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2019709_2020726_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2022705_2023719_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2023805_2024711_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2024867_2025212_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2025369_2025828_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2025841_2028058_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2028054_2029116_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2029144_2030119_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2030070_2030889_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2030901_2031510_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2031684_2032080_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2032098_2033538_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2033566_2033914_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2033932_2034883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2035535_2036486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036584_2037535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2037618_2039436_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2039509_2040157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2040169_2041099_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2041268_2041733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2041980_2042661_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2042709_2044401_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2044416_2044968_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2044964_2045336_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2045448_2046285_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2046295_2046820_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2046917_2047097_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2047226_2048201_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2048331_2048688_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2048677_2049553_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2049651_2050536_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2050557_2051853_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2052801_2053452_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2053539_2055060_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2058227_2059178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2059195_2059336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2060150_2060510_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2060497_2061934_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2061930_2062584_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2062580_2063774_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2063877_2065152_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2065148_2066099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2077303	2117994	4106294	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2077303_2078254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2078352_2079303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2079262_2079676_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2079960_2080260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2080669_2082952_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2083417_2083612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2083637_2085668_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2085687_2085900_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2086177_2086717_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2086830_2088126_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2088202_2089360_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2089543_2090443_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2090461_2091766_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2091731_2092838_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2092925_2093162_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2093300_2094371_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2094374_2095730_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2095756_2096914_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2096919_2097558_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2097559_2098855_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2098904_2100191_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2100206_2100713_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2100709_2101858_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2101885_2102311_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2102633_2105516_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2105608_2106364_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2107129_2108479_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2108577_2109528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2109626_2110577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2110650_2111124_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2111149_2112358_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2112354_2113128_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2113127_2113751_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2113916_2114177_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2114480_2115062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2115128_2115383_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2115369_2117994_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2145777	2211326	4106294	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2145777_2146728_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2146928_2147738_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2147862_2148813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2148809_2149703_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2149827_2150022_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2150021_2150363_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2150372_2152235_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2152364_2152877_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2152879_2153203_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2153204_2153615_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2153652_2154864_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2154881_2155394_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2155609_2156101_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2156353_2158390_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2158467_2159670_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2159798_2160449_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2162006_2162957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2163527_2163740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2163757_2164489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2164523_2165165_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2165157_2165826_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2168038_2168815_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2168836_2169994_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2169990_2170422_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2170418_2171216_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2171235_2171637_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2171703_2172675_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2172740_2173964_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2174191_2175142_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2175265_2177719_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2177907_2179212_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2179316_2179970_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2179972_2181283_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2181461_2182040_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2182151_2182352_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2182697_2183264_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2183347_2183551_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2183857_2184178_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2184219_2184501_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2184575_2185832_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2186214_2186544_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2188114_2188936_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2188935_2190075_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2190081_2190978_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2190992_2192900_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2193259_2195872_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2195924_2198225_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2198221_2199430_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2199691_2200066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2200062_2201013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2201111_2203106_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2203165_2204131_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2204120_2206982_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2206984_2207491_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2207595_2208804_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2208805_2209744_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2209905_2210379_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2210375_2211326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2504967	2563205	4106294	tRNA,transposase	Planktothrix_phage(28.57%)	52	NA	NA
WP_005012067.1|2504967_2505918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2506397_2507054_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2507068_2508736_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2508738_2509368_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2509579_2510674_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2510818_2511631_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930382.1|2513383_2514514_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2514700_2515777_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2515858_2516509_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2516523_2517927_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2518210_2519029_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2519025_2519730_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2520629_2521745_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2521778_2522153_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2522175_2523333_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2523345_2523579_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2524213_2527183_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2527197_2527407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2527558_2528188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2528184_2530242_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2530298_2530979_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2530975_2531536_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2531542_2532640_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2532792_2533386_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2533382_2534675_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2534688_2535231_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2535240_2536077_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2536110_2537172_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2537213_2538266_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2538281_2538584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2538725_2539676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2539693_2539858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2539854_2541549_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2541545_2542631_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2542678_2543578_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2543588_2544233_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545254_2548497_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2548507_2549662_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2549888_2550851_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2550949_2551900_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2551998_2552949_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811741.1|2553706_2554144_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2554189_2555083_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2555130_2556303_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2556299_2557454_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2557650_2558001_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2557990_2558425_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2558441_2559392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2559539_2560007_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2559987_2561145_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2561210_2562137_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2562254_2563205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2605484	2671984	4106294	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2605484_2606435_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606804_2607377_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607379_2608390_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608382_2608883_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2608893_2609235_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2609303_2610038_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610054_2610324_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610346_2611135_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611181_2612198_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612414_2613857_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614035_2615655_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615775_2617596_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617674_2619207_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2619240_2620887_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2620956_2621979_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2621996_2623130_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623132_2623822_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623821_2624607_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624650_2625415_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625453_2626875_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2626940_2627645_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627692_2628112_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628124_2628532_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628715_2629426_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629552_2629843_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629860_2630343_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634848_2636003_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2636308_2637325_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637571_2638360_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638426_2639107_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639103_2639874_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2639972_2640923_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2640978_2641896_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2641906_2643085_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643104_2644100_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645688_2646297_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646284_2647325_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647342_2648305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648301_2649495_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2649491_2650289_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650314_2651301_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651319_2653359_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2653560_2654241_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654254_2655166_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655162_2655741_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655879_2656785_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656792_2660212_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660199_2662800_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663755_2664388_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664781_2665540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2665536_2666739_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2666926_2667877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2668784_2669930_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2669916_2670672_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2670788_2670968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2671033_2671984_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2834546	2900129	4106294	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2834546_2835497_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2835595_2836546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852977.1|2836563_2836752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930231.1|2836748_2837738_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2837821_2838175_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2838252_2838861_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2840534_2841113_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2841137_2842091_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2842130_2843048_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2843169_2844096_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2844103_2844850_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2845176_2846118_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2846344_2848042_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2848476_2849898_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2850051_2850831_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2850955_2851834_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2851939_2853064_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930219.1|2854063_2854918_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2855025_2855436_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2855432_2856383_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2856481_2857363_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2857440_2858820_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2858858_2859704_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2859719_2860034_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2860066_2860603_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2860775_2861351_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2861452_2862190_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2862257_2863895_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2864002_2864758_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2864745_2865708_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2865815_2866610_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2866671_2868747_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2868911_2871287_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2871367_2872723_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874201_2874924_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2874978_2875962_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876091_2877042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877038_2877941_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878028_2878787_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878799_2879891_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2879988_2881416_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881645_2882860_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2882905_2885776_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888186_2888675_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888800_2891497_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891651_2893934_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2894099_2894732_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2894830_2895781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895827_2896382_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896449_2897295_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897364_2898333_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898332_2900129_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2917698	2974905	4106294	tRNA,transposase,holin	Catovirus(22.22%)	49	NA	NA
WP_010930190.1|2917698_2919219_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919261_2919564_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919560_2920193_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920271_2922137_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922133_2922928_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2922956_2924072_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2924976_2925855_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925854_2926679_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926846_2927797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928009_2930859_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930840_2931569_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931709_2933173_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933169_2933541_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933558_2934872_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2934908_2935367_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2935321_2935462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2935479_2936430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936426_2937440_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937579_2938566_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2938924_2939632_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940212_2941163_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941314_2941917_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2941935_2942568_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942612_2942864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942805_2944692_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944710_2945553_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945549_2946908_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947128_2947923_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948153_2949647_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2949882_2951964_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952158_2953199_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953333_2954350_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954371_2955229_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955273_2956050_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2956262_2956400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2956417_2957368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957394_2957859_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959065_2961354_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_077099509.1|2961470_2962211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962384_2963539_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963573_2964404_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964487_2966032_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966074_2966434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966435_2966849_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2966889_2967207_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967291_2968008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968271_2969693_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010930742.1|2970997_2971948_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2973888_2974905_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	2983525	3056041	4106294	tRNA,transposase	Pseudomonas_phage(14.29%)	59	NA	NA
WP_023853536.1|2983525_2984542_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985479_2986907_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986903_2987926_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2987915_2988389_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988529_2989417_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989413_2991057_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991053_2992061_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992891_2993908_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994007_2994640_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994648_2995038_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995090_2996143_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997006_2998713_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998786_2999287_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999301_3001359_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001385_3001679_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001780_3002728_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002740_3003616_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003736_3004297_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004331_3004655_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005090_3005828_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3006126_3007077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3007320_3007584_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3007657_3007939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3007955_3008816_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3008812_3009148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3009201_3009852_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3011532_3012477_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3012522_3012840_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3012842_3013781_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3013958_3014444_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3014462_3015011_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3015042_3015195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3016524_3017166_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3017320_3019669_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3019665_3020604_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3020629_3021820_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3021816_3022590_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3022619_3023813_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3023930_3024941_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3024958_3026995_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3027189_3027930_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|3028028_3028979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029021_3030197_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030418_3032209_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930127.1|3033894_3036600_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036892_3038647_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038643_3039270_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039266_3040118_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040247_3042308_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042494_3043109_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043254_3043506_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043575_3044958_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044954_3048134_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3048941_3049859_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3049910_3050642_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050701_3051274_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052782_3053799_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3053936_3054986_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055090_3056041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	3075441	3140380	4106294	transposase	Bacillus_phage(18.18%)	56	NA	NA
WP_005012067.1|3075441_3076392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076490_3077075_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077109_3078099_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078095_3079037_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079033_3080254_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080296_3080611_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080802_3081162_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081163_3082879_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083066_3083738_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083752_3085081_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085077_3085977_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086063_3087149_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087141_3088272_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088274_3090956_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091326_3091908_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092033_3092759_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092755_3093433_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093648_3094830_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095602_3095785_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095814_3096765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096894_3097287_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097563_3098475_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098599_3099574_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099570_3100521_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3100619_3101705_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3101802_3102213_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3102828_3104742_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3104877_3107490_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3107491_3108226_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3108389_3109571_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3109567_3109780_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3109776_3110757_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3110802_3111630_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3111779_3113594_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3113648_3114032_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3114028_3114979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115091_3115343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3115536_3115752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115848_3116967_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117086_3117299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117458_3117680_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3117732_3118683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119859_3121230_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121262_3122054_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122066_3123122_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123147_3124023_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124128_3124377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124411_3125866_-	carboxylase	NA	NA	NA	NA	NA
WP_010930057.1|3126411_3127764_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3127987_3130876_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133020_3134322_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3134336_3135053_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135334_3136015_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3136542_3137202_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137600_3139433_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139429_3140380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	3232002	3301005	4106294	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232002_3232953_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3232949_3233969_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233978_3236687_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236834_3237491_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237589_3238540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238687_3239581_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239780_3241475_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241509_3242436_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242504_3243602_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243620_3244484_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244495_3245278_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245274_3246393_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246389_3247922_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247962_3248970_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249114_3249837_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249852_3250875_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251191_3251926_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252010_3253756_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253752_3254505_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254549_3255506_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255594_3256161_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256168_3257029_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257058_3257787_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_023998704.1|3257818_3258502_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259339_3260254_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260318_3261227_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261317_3262742_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262743_3264066_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264062_3266201_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266278_3271399_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271499_3271808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271877_3272435_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272450_3273932_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3273986_3275840_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276102_3277440_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277474_3279472_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279489_3281538_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281668_3282535_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282803_3283769_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283883_3285032_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285456_3285768_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285801_3286062_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286211_3287345_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287415_3288552_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288717_3289512_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289574_3290018_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290133_3291084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291206_3291614_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291686_3293882_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294103_3295054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295013_3295538_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295669_3296641_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296760_3299205_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299220_3299811_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300054_3301005_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	3316451	3416564	4106294	tRNA,tail,terminase,protease,transposase	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3316451_3317402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318133_3318511_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318495_3319197_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319340_3320033_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320032_3321136_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321245_3323618_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323614_3325174_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325198_3325996_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326027_3327173_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327277_3328720_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328722_3329952_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332089_3333040_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334169_3334727_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334702_3335053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335221_3336016_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336012_3337062_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337061_3337751_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337837_3338335_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338366_3339683_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339699_3340674_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340710_3341169_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341168_3341849_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341851_3342280_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342332_3344063_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344128_3344701_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344681_3345368_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345723_3346395_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346723_3346945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3346944_3347226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347222_3347738_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347737_3348289_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348267_3348510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348514_3349327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349326_3349590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349630_3349828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349808_3350225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350229_3354186_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354178_3354568_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354564_3355098_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355165_3355525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355534_3358147_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358172_3358463_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358480_3358810_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358819_3359338_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359592_3360093_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360100_3360523_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360519_3360918_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3360914_3361310_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361309_3361498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361511_3361994_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362056_3362308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362982_3363933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364361_3364964_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365086_3365329_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365334_3366390_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366418_3367837_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367839_3369117_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369103_3369589_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370228_3371179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3371196_3371418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3371435_3372125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372117_3372369_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3372923_3373535_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373606_3373813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374064_3375015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375113_3376187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376354_3377149_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377188_3377713_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377705_3379448_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379657_3380416_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380418_3381126_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381142_3382024_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382034_3382793_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382761_3383517_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383586_3385005_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385026_3385677_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385810_3386146_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386234_3387185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387261_3389082_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389086_3390160_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390282_3391251_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391324_3392236_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392254_3392827_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3392907_3393456_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393455_3395045_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395114_3395354_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395394_3396420_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396485_3397667_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397763_3398216_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398225_3399566_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399882_3400920_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401301_3401661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401744_3402686_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402760_3403711_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404004_3405099_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405189_3406062_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406083_3406923_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3406998_3408516_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408612_3409713_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409729_3410152_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410174_3410387_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410433_3411354_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411536_3412286_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412288_3412618_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3412905_3414258_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414269_3414653_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414714_3415515_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415613_3416564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011703	Bordetella pertussis strain H779 chromosome, complete genome	4106294	4005362	4070274	4106294	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4005362_4005848_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4005936_4006074_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006066_4007047_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007313_4008123_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008162_4008843_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4008836_4009295_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009306_4009669_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009751_4010435_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010490_4010799_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4010817_4011132_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011128_4013603_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013610_4015002_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014998_4015184_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015162_4015864_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4015860_4016682_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016662_4017787_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017779_4018799_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019004_4019895_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020139_4020931_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021013_4021388_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021365_4022775_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022767_4024150_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024484_4026089_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026166_4027138_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027148_4028075_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028465_4029416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029585_4030812_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031011_4031878_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031870_4032833_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032933_4033884_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033982_4034933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035031_4035982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035978_4037472_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037468_4040576_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040572_4043641_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043637_4044888_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045068_4045821_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4045862_4046507_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046515_4047496_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047595_4048339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048421_4048769_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048866_4049709_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049753_4050641_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050667_4050856_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050953_4052411_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052397_4053924_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053942_4054410_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054409_4055432_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055552_4056293_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056347_4057448_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057449_4058640_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058759_4059776_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060094_4060766_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060762_4061671_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061882_4062530_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066390_4067458_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067468_4068278_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068367_4069141_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_162291321.1|4069141_4069306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069323_4070274_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
