The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	27282	70035	4106491	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60473_60893_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69084_70035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	232664	307008	4106491	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232664_233615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233611_234802_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234923_235688_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235774_236878_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237069_238086_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238367_238856_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240199_240880_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240941_241793_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241789_242587_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242690_243584_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243595_245485_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245821_249595_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249591_250542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250850_251543_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251916_252417_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252523_253444_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253460_253937_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254030_255881_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255936_256695_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256722_258156_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258229_259009_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259021_259855_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259863_260634_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260633_261698_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261849_264477_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264540_267162_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268089_268548_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268826_271070_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271266_273291_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273414_274377_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274588_275728_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275750_276716_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276911_278102_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278115_278361_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278389_280411_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280457_282065_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282165_283335_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286216_287167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287190_288249_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288323_288698_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289252_290203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291759_292605_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292692_293856_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294274_295246_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295284_296712_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296831_297623_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297741_300195_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300289_301399_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301401_302811_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303216_303351_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303446_303818_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303814_304087_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304135_305827_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306057_307008_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	489371	607266	4106491	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489371_490322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490420_491371_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492093_493368_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493454_494537_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494547_495360_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495396_495723_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495727_496288_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496528_497521_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497539_498535_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498550_499927_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499919_502301_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502317_502707_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502833_503064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503168_504119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504217_505168_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505164_506037_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506967_508254_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508307_509234_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509252_509708_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510559_511351_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511382_512003_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|511999_512629_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512641_513250_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513246_514236_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514341_515556_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517507_518458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519891_521178_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521343_521652_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|521673_522318_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|522358_524149_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524261_525122_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525118_526324_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526320_527205_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528721_529156_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529118_530117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530228_531374_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531448_532777_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532810_533401_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533690_534485_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535654_536389_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536395_537262_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537269_539045_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539087_539585_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539881_540832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540930_541881_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542221_543172_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545495_546644_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|546688_547312_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547464_548457_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548453_549191_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549270_550092_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550180_551044_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551170_551407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553381_554416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554474_555452_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555459_556380_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556376_558077_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558079_558985_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559028_560162_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560290_561241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561339_563409_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563451_565554_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565860_566937_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567012_567897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568079_568502_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568511_569912_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569954_570860_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570958_572500_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572534_573074_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573086_573557_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573694_573937_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574053_574935_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575007_575328_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576179_577130_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578453_579230_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579264_581037_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581038_581941_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582065_582425_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582456_583419_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583517_584468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584480_585416_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585475_586315_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586311_587481_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587477_588767_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588809_589184_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|589298_590027_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590034_590739_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591002_592523_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592578_593142_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593160_594192_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594188_594977_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595152_596142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597898_598849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600071_600974_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600975_601830_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601876_602986_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602996_603515_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603544_604177_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604248_604908_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|604904_606044_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606393_607266_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	611680	675513	4106491	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611680_612697_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612968_613595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613650_614778_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614783_620501_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621068_622013_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622201_623137_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623254_624826_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624905_626114_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626611_627529_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629889_630111_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630441_631458_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631542_631794_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631797_632613_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632725_633604_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633715_635479_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635594_636935_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638004_639429_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639428_640130_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641634_642585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642680_643652_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643656_644337_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644474_644867_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644974_645991_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646230_647016_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647110_648520_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648530_649331_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649351_650122_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650164_650632_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650628_651579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653527_654406_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655332_658311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658664_659615_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659611_660700_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660735_661599_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662738_663128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663131_663914_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663947_664733_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665008_666148_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666144_666936_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666932_667682_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667678_668551_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668550_669552_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669548_670712_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670737_671421_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671374_672709_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672701_673796_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674562_675513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	694424	771733	4106491	protease,integrase,transposase,tRNA	Bacillus_phage(20.0%)	58	741561:741579	761449:761467
WP_023995489.1|694424_695375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695473_696949_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698536_699424_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699426_700368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700413_701979_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703756_705082_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705264_706722_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706685_707183_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707213_708185_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|708237_708669_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708798_709467_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710195_711299_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711404_712679_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712690_713716_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713717_715088_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715088_716225_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716271_718197_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718193_719315_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719311_720466_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720462_721593_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721600_723166_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723172_724555_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724833_725445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725536_726952_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726969_727680_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727676_728999_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729078_731040_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731165_732479_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732587_733886_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734068_734977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734986_735196_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735207_736887_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736988_737942_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738032_738860_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738858_740745_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740741_741341_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741389_742289_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741561:741579	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742497_743448_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743570_744185_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744313_744910_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744906_745689_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745761_746853_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747132_748260_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748601_749648_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|750158_752915_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752916_755868_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755883_757095_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757091_757292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|757278_758229_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758245_758740_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758743_759001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759544_760456_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760537_760822_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761605_762556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761449:761467	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762974_765539_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765583_767437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767769_769341_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770782_771733_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	1018716	1120060	4106491	transposase,tRNA	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1018716_1019832_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1019932_1020751_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1020848_1021460_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1021619_1022996_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1023058_1023517_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1023601_1024297_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1024358_1024640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1025202_1025955_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1025999_1027076_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1027072_1028023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028125_1028788_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028882_1029053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029405_1030407_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030409_1031606_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031626_1032430_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1032510_1032807_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032837_1033401_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033441_1034299_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034306_1035056_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035077_1035950_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035978_1036758_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036791_1037589_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1040243_1040636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040629_1041490_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041493_1042456_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043232_1043922_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044782_1045733_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046082_1046952_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047022_1047718_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047707_1048217_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048213_1049434_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049381_1050284_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051170_1052457_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052495_1053869_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053907_1054609_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054907_1055897_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055997_1056459_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056474_1057023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1057164_1058640_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058745_1059837_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059840_1060623_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060632_1061421_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062546_1062981_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062977_1063988_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064031_1064958_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065244_1065613_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1065829_1066780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1066824_1069251_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1069299_1069992_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070064_1071264_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071281_1072187_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072302_1073232_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073257_1074604_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1074616_1075381_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1075394_1076177_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076369_1077320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1077381_1078491_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1079003_1079840_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1079966_1080875_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080871_1081822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1082207_1082750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083785_1084736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1084977_1085346_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1085391_1086516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1087650_1088391_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1088494_1089115_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1089218_1090169_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090165_1092274_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092418_1093078_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093109_1093574_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093849_1094035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094086_1094839_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094845_1096108_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096149_1097388_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098465_1099593_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099603_1100431_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100417_1101284_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102650_1103055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103417_1104329_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104343_1105054_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105050_1106295_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106296_1106731_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106759_1107065_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1107163_1108114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1108170_1109319_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109399_1110350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110881_1111679_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111726_1112380_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112336_1113425_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113589_1115815_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118092_1118989_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1119109_1120060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	1150446	1221417	4106491	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1150446_1151397_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1151453_1152566_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1154949_1155900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156490_1157267_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157384_1157648_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157748_1158753_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158953_1160555_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160580_1161339_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161430_1162087_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162177_1162942_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162951_1163140_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163195_1164239_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164235_1164649_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164645_1165266_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165546_1166497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166664_1168056_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168128_1168707_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168823_1170221_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170336_1171542_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171641_1172160_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172254_1172500_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172727_1173042_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1173140_1178321_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178317_1180486_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1180541_1182857_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1182861_1184181_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184199_1185873_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185877_1186546_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186702_1190524_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1190854_1191805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191826_1192972_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193120_1194050_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194046_1195135_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195131_1195935_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195931_1196663_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196720_1198010_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198106_1198709_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203262_1203601_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204308_1204575_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206281_1207232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207228_1208560_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1209820_1211821_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211813_1212455_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212451_1212859_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212855_1213656_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213730_1214435_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214466_1215261_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215257_1216208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216306_1217257_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217355_1217790_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217872_1220209_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220400_1221417_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	1268811	1349686	4106491	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1268811_1269762_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1269758_1270709_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1270969_1271998_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1272077_1273376_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1273372_1273954_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1274266_1278313_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1278553_1286215_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1286211_1287162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1288301_1288775_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1288914_1289535_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1289670_1290471_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1290525_1291617_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1291638_1292082_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1292110_1292743_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1292853_1293270_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1293262_1293955_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1294061_1294436_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1294512_1295322_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1295417_1296362_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1296400_1297372_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1297462_1297900_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1297958_1298840_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1299843_1300704_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1300736_1302119_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1302115_1303135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1303507_1304002_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1304009_1304750_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1304830_1306435_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1306474_1307263_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1307388_1309554_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1310434_1311247_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1311259_1311568_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1311685_1313416_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1313417_1314620_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1314692_1315361_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1315482_1315950_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1316085_1317468_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1317464_1318589_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1318585_1321222_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1321637_1322588_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1326334_1326946_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1327168_1328629_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1328725_1330318_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1330671_1330929_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1330930_1332271_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1332366_1333056_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1333068_1334499_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1336223_1337045_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1337055_1338627_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1338655_1339633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1339659_1340463_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1340459_1341254_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1341261_1342497_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1342510_1342924_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1343673_1344624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345245_1346973_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347084_1348443_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1348735_1349686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	1469077	1521230	4106491	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1469077_1470028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1470194_1470548_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470560_1470923_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470964_1471390_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471592_1472849_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1473047_1474028_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1474177_1475419_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1475517_1476468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1476476_1477172_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479993_1480593_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480603_1482769_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482792_1484577_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484576_1484666_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1485360_1485633_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485632_1487699_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1487695_1488646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1488744_1489695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1489810_1490143_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1490139_1490826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1490812_1491772_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1491804_1494174_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1494173_1494806_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1494907_1496248_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1496294_1497650_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1497940_1498177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1498364_1498682_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1498954_1499470_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1499740_1500496_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1500834_1501041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1501048_1501708_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1502002_1504207_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1504317_1505541_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1505663_1506638_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1506705_1507899_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1507913_1508714_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1508710_1510567_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1510563_1511169_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1511187_1512573_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1513298_1514525_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1514613_1515396_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1515494_1516445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1516471_1517245_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1517256_1518498_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1520279_1521230_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	1565155	1633239	4106491	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1565155_1565644_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1565761_1566340_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1566445_1566814_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1566912_1567863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1567869_1568982_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1569668_1570871_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1571074_1573735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1573747_1577152_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1577819_1580045_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1580091_1580418_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1580468_1581077_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1581175_1582126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1582195_1582960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1582956_1583493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1583659_1584511_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1584570_1585197_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585193_1586144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1586242_1587355_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1587344_1588346_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1588451_1589963_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1589959_1591264_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1591375_1591936_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1592203_1592758_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1593213_1593429_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1593683_1596281_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1596277_1597465_+	cupin	NA	NA	NA	NA	NA
WP_062826574.1|1597733_1597958_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930436.1|1598122_1598737_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1598825_1599947_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1599964_1600870_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1601762_1602713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1602894_1603647_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1603715_1604375_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1604371_1605100_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1605112_1607392_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1607416_1607620_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1607661_1608294_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1608429_1609347_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1609343_1610057_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1610294_1611065_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1611069_1611669_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1611913_1613404_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1613462_1613747_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1614312_1615239_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1615375_1616116_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1616282_1617659_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1617840_1618746_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1620397_1622200_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1622317_1622968_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1623066_1624017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1624038_1625259_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1625444_1626857_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1626920_1627988_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930452.1|1629483_1630428_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1630587_1631286_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1631363_1632269_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1632288_1633239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	1669188	1724779	4106491	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1669188_1670139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1670197_1670971_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1670963_1672520_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1672516_1673467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1674793_1675396_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1675635_1676337_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1676330_1677113_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1677297_1678248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1678346_1679084_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1679273_1680032_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1680078_1681068_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1681245_1682214_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1683753_1684722_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1684730_1685672_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1686145_1687156_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1687146_1688661_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1688657_1690004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1690006_1691041_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1691090_1692716_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1693268_1694219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1694323_1695271_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1695324_1697139_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1697131_1697806_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1697935_1701010_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1701023_1701323_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1701637_1702261_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1702504_1703374_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1703351_1704296_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1704381_1705308_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1705420_1706200_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1706190_1707387_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1707417_1708368_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1708589_1709279_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1709343_1710099_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1710150_1711143_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1711152_1712106_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1712221_1713184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1714585_1715014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1715010_1715961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1716254_1716977_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1717415_1718603_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1718606_1718957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1720706_1721678_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1721691_1722405_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1722409_1723327_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1723433_1723730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1723828_1724779_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	1958592	2028244	4106491	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1958592_1961250_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1961327_1962530_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1962526_1963039_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1963161_1963599_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1963875_1964826_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1964924_1965875_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1966038_1967934_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1968047_1968215_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1968278_1968515_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1968883_1970035_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1971598_1972549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1973000_1974002_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1974174_1975032_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1975028_1976291_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1976391_1976766_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1976838_1978026_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1978110_1978881_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1978994_1979759_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1979709_1981011_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1981007_1981814_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1983558_1984530_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1984686_1985199_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1985357_1986332_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1987332_1988127_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1988152_1988959_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1989069_1989660_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1989670_1990849_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1990951_1991326_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1991578_1992910_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1992976_1996207_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1997697_1998444_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1998528_1998990_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1999027_2000086_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2000048_2001878_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2001917_2002490_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2003914_2004736_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2005054_2006377_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2006736_2007372_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2007331_2008282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2009152_2010025_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2010102_2011242_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2011600_2012857_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2012862_2013390_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2013394_2014213_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2014212_2014935_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2014956_2015271_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2015288_2016437_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2016467_2017343_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2017339_2018659_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2018731_2019928_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2019938_2021426_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2024020_2024920_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2025057_2026023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2026121_2027072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2027293_2028244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	2039740	2089136	4106491	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2039740_2040691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2041828_2042125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2042299_2043652_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2043794_2044811_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2046790_2047804_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2047890_2048796_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2048952_2049297_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2049454_2049913_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2049926_2052143_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2052139_2053201_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2053229_2054204_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2054155_2054974_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2054986_2055595_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2055769_2056165_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2056183_2057623_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2057651_2057999_+	GFA family protein	NA	NA	NA	NA	NA
WP_077069038.1|2058017_2058968_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2059620_2060571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2060654_2062472_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2062545_2063193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2063205_2064135_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2064304_2064769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2065016_2065697_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2065745_2067437_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2067452_2068004_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2068000_2068372_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2068484_2069321_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2069331_2069856_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2069953_2070133_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2070262_2071237_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2071367_2071724_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2071713_2072589_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2072687_2073572_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2073593_2074889_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2075837_2076488_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2076575_2078096_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2078353_2080219_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2081264_2082215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2082232_2082373_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2083187_2083547_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2083534_2084971_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2084967_2085621_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2085617_2086811_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2086914_2088189_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2088185_2089136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	2100340	2141031	4106491	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2100340_2101291_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2101389_2102340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2102299_2102713_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2102997_2103297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2103706_2105989_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2106454_2106649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2106674_2108705_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2108724_2108937_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2109214_2109754_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2109867_2111163_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2111239_2112397_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2112580_2113480_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2113498_2114803_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2114768_2115875_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2115962_2116199_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2116337_2117408_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2117411_2118767_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2118793_2119951_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2119956_2120595_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2120596_2121892_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2121941_2123228_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2123243_2123750_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2123746_2124895_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2124922_2125348_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2125670_2128553_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2128645_2129401_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2130166_2131516_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2131614_2132565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2132663_2133614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2133687_2134161_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2134186_2135395_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2135391_2136165_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2136164_2136788_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2136953_2137214_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2137517_2138099_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2138165_2138420_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2138406_2141031_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	2168814	2234363	4106491	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2168814_2169765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2169965_2170775_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2170899_2171850_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2171846_2172740_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2172864_2173059_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2173058_2173400_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2173409_2175272_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2175401_2175914_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2175916_2176240_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2176241_2176652_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2176689_2177901_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2177918_2178431_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2178646_2179138_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2179390_2181427_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2181504_2182707_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2182835_2183486_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2185043_2185994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2186564_2186777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2186794_2187526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2187560_2188202_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2188194_2188863_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2191075_2191852_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2191873_2193031_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2193027_2193459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2193455_2194253_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2194272_2194674_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2194740_2195712_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2195777_2197001_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2197228_2198179_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2198302_2200756_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2200944_2202249_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2202353_2203007_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2203009_2204320_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2204498_2205077_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2205188_2205389_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2205734_2206301_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2206384_2206588_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2206894_2207215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2207256_2207538_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2207612_2208869_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2209251_2209581_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2211151_2211973_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2211972_2213112_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2213118_2214015_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2214029_2215937_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2216296_2218909_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2218961_2221262_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2221258_2222467_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2222728_2223103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2223099_2224050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2224148_2226143_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2226202_2227168_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2227157_2230019_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2230021_2230528_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2230632_2231841_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2231842_2232781_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2232942_2233416_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2233412_2234363_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	2320540	2384118	4106491	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2320540_2321491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2321792_2322269_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2322892_2324530_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2324560_2325874_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2326007_2326325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2326425_2327748_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2327744_2328695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2328794_2329745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2330274_2331297_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2331325_2332156_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2332172_2333870_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2333934_2335011_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2335170_2336034_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2336064_2336634_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2336650_2337502_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2338559_2339441_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2339515_2340505_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2340567_2341518_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2341580_2342438_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2342497_2342986_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2344558_2345749_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2345745_2347332_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2347350_2348418_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2348522_2350067_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2350485_2352060_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2352176_2353184_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2353180_2354020_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2354024_2355662_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2355658_2356609_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2356751_2358026_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2358055_2358346_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2358418_2359432_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2359451_2360714_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2360716_2361640_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2361636_2363130_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2363140_2364073_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2364254_2365580_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2365614_2366970_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2367030_2368551_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2368705_2369437_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2369534_2370845_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2370860_2371772_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2371762_2372356_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2372417_2372804_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2372815_2373286_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2373297_2373921_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2373941_2376689_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2383167_2384118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	2529059	2587303	4106491	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2529059_2530010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2530489_2531146_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2531160_2532828_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2532830_2533460_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2533671_2534766_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2534910_2535723_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2535726_2537310_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2537480_2538611_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2538797_2539874_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2539955_2540606_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2540620_2542024_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2542307_2543126_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2543122_2543827_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2544726_2545842_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2545875_2546250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2546272_2547430_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2547442_2547676_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2548310_2551280_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2551294_2551504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2551655_2552285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2552281_2554339_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2554395_2555076_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2555072_2555633_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2555639_2556737_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2556889_2557483_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2557479_2558772_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2558785_2559328_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2559337_2560174_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2560207_2561269_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2561310_2562363_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2562378_2562681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2562822_2563773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2563951_2565646_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2565642_2566728_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2566775_2567675_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2567685_2568330_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2569351_2572594_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2572604_2573759_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2573985_2574948_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2575046_2575997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2576095_2577046_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2577055_2577745_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2577804_2578242_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2578287_2579181_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2579228_2580401_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2580397_2581552_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2581748_2582099_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2582088_2582523_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2582539_2583490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2583637_2584105_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2584085_2585243_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2585308_2586235_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2586352_2587303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	2629583	2696083	4106491	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629583_2630534_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630903_2631476_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2631478_2632489_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2632481_2632982_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632992_2633334_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2633402_2634137_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2634153_2634423_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2634445_2635234_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2635280_2636297_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2636513_2637956_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2638134_2639754_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639874_2641695_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641773_2643306_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2643339_2644986_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2645055_2646078_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2646095_2647229_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2647231_2647921_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647920_2648706_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648749_2649514_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649552_2650974_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2651039_2651744_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651791_2652211_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2652223_2652631_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652814_2653525_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653651_2653942_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653959_2654442_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658947_2660102_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2660407_2661424_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661670_2662459_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2662525_2663206_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2663202_2663973_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2664071_2665022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2665077_2665995_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2666005_2667184_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2667203_2668199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669787_2670396_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2670383_2671424_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2671441_2672404_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2672400_2673594_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673590_2674388_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2674413_2675400_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2675418_2677458_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2677659_2678340_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2678353_2679265_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2679261_2679840_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679978_2680884_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680891_2684311_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2684298_2686899_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687854_2688487_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688880_2689639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2689635_2690838_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2691025_2691976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692883_2694029_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2694015_2694771_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694887_2695067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2695132_2696083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	2878485	3029191	4106491	holin,transposase,tRNA	uncultured_Mediterranean_phage(16.67%)	118	NA	NA
WP_010929956.1|2878485_2879436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2879534_2880416_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2880493_2881873_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2881911_2882757_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2882772_2883087_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2883119_2883656_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2883828_2884404_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2884506_2885244_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2885311_2886949_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2887056_2887812_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2887799_2888762_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2888869_2889664_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2889725_2891801_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2891965_2894341_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2894421_2895777_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2897255_2897978_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2898032_2899016_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2899145_2900096_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2900092_2900995_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2901082_2901841_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901853_2902945_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2903042_2904470_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904699_2905914_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905959_2908830_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2911240_2911729_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911854_2914551_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914705_2916988_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2917152_2917785_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2917883_2918834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918880_2919435_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2919502_2920348_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2920417_2921386_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2921385_2923182_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2925081_2929008_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929743_2932974_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2933255_2934083_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2934116_2934812_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934804_2936085_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2936094_2937072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2937053_2938754_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938856_2939960_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939990_2940746_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940752_2942273_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2942315_2942618_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942614_2943247_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2943325_2945191_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2945187_2945982_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2946010_2947126_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2948030_2948909_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948908_2949733_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949900_2950851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2951063_2953913_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953894_2954623_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954763_2956227_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2956223_2956595_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956612_2957926_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957962_2958421_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2958533_2959484_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2959480_2960494_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960633_2961620_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961978_2962686_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2963266_2964217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2964368_2964971_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964989_2965622_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965666_2965918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965859_2967746_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2967764_2968607_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2968603_2969962_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2970182_2970977_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2971207_2972701_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2972936_2975018_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2975212_2976253_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2976387_2977404_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2977425_2978283_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2978327_2979104_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2979471_2980422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2980448_2980913_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2982119_2984408_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2984524_2985397_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2985439_2986594_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986628_2987459_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987542_2989087_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2989129_2989489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2989490_2989904_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989944_2990262_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2990346_2991063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2991326_2992748_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2995420_2996371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2996350_2996605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996943_2997960_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2998295_2998937_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2999027_3000464_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000621_3001695_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001691_3002828_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002972_3003317_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3003383_3005264_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3005313_3006249_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006581_3007598_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3008535_3009963_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009959_3010982_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010971_3011445_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011585_3012473_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3012469_3014113_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3014109_3015117_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015947_3016964_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3017063_3017696_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017704_3018094_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3018146_3019199_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3020062_3020827_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_003811919.1|3020900_3021401_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3021415_3023473_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3023499_3023793_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023894_3024842_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024854_3025730_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025850_3026411_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3026445_3026769_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3027204_3027942_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3028240_3029191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	3050142	3190710	4106491	transposase	Bacillus_virus(11.11%)	113	NA	NA
WP_010929969.1|3050142_3051093_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3051191_3052142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3052184_3053360_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053581_3055372_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3055384_3057046_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057058_3059764_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060056_3061811_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061807_3062434_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3062430_3063282_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3063411_3065472_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065658_3066273_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3066418_3066670_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066739_3068122_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_029443805.1|3072105_3073023_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3073074_3073806_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073865_3074438_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075946_3076963_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3077100_3078150_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3078254_3079205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3079300_3080026_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3080236_3080617_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080922_3081795_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081802_3082183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3082336_3083611_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3085098_3086007_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086804_3087869_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3089705_3090740_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090929_3091571_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091653_3093480_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093723_3094653_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094652_3095402_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3095473_3096388_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3096407_3097553_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097613_3098525_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098605_3099556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3099654_3100239_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3100273_3101263_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3101259_3102201_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3102197_3103418_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3103460_3103775_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3103966_3104326_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3104327_3106043_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3106230_3106902_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3106916_3108245_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3108241_3109141_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3109227_3110313_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3110305_3111436_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3111438_3114120_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3114490_3115072_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3115197_3115923_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3115919_3116597_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3116812_3117994_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3118766_3118949_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3118978_3119929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120058_3120451_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120727_3121639_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121763_3122738_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122734_3123685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123783_3124869_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124966_3125377_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3125992_3127906_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3128041_3130654_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130655_3131390_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131553_3132735_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132731_3132944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132940_3133921_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133966_3134794_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134943_3136758_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136812_3137196_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3137192_3138143_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3138255_3138507_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3138700_3138916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139012_3140131_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3140250_3140463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140622_3140844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140896_3141847_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143023_3144394_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3144426_3145218_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3145230_3146286_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3146311_3147187_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3147292_3147541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147575_3149030_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149026_3149548_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149576_3150929_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3151152_3154041_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3156185_3157487_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3157501_3158218_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3158499_3159180_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3159707_3160367_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160765_3162598_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162594_3163545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164708_3166424_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3166434_3166926_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3166998_3168015_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3168182_3168962_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168980_3169508_-	lipoprotein	NA	NA	NA	NA	NA
WP_005019401.1|3169506_3169713_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814002.1|3169801_3170071_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3170161_3172321_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3172441_3173161_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3173157_3174108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3174248_3175466_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3175459_3176071_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3176704_3177682_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3177825_3178572_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3178593_3179040_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3179827_3182059_+	BCCT family transporter	NA	NA	NA	NA	NA
WP_003813993.1|3182081_3182882_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3183163_3184396_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3184506_3185496_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3185526_3186915_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3188513_3189497_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3189693_3190710_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	3255168	3324171	4106491	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3255168_3256119_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3256115_3257135_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3257144_3259853_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3260000_3260657_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260755_3261706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3261853_3262747_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3262946_3264641_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3264675_3265602_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3265670_3266768_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3266786_3267650_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3267661_3268444_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3268440_3269559_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3269555_3271088_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3271128_3272136_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3272280_3273003_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3273018_3274041_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3274357_3275092_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3275176_3276922_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3276918_3277671_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3277715_3278672_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3278760_3279327_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3279334_3280195_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3280224_3280953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3280984_3281668_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3282505_3283420_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3283484_3284393_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3284483_3285908_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3285909_3287232_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3287228_3289367_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3289444_3294565_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3294665_3294974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3295043_3295601_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3295616_3297098_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3297152_3299006_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3299268_3300606_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3300640_3302638_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3302655_3304704_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3304834_3305701_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3305969_3306935_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3307049_3308198_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3308622_3308934_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3308967_3309228_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3309377_3310511_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3310581_3311718_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3311883_3312678_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3312740_3313184_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3313299_3314250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3314372_3314780_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3314852_3317048_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317269_3318220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3318179_3318704_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318835_3319807_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319926_3322371_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3322386_3322977_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3323220_3324171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	3339617	3439729	4106491	protease,tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(14.29%)	106	NA	NA
WP_005012067.1|3339617_3340568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3341299_3341677_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341661_3342363_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3342506_3343199_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3343198_3344302_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3344411_3346784_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346780_3348340_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3348364_3349162_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3349193_3350339_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3350443_3351886_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351888_3353118_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3355255_3356206_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3357335_3357893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3357868_3358219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3358387_3359182_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3359178_3360228_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3360227_3360917_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3361003_3361501_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3361532_3362849_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814643.1|3363875_3364334_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3364333_3365014_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3365016_3365445_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3365497_3367228_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3367293_3367866_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367846_3368533_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368888_3369560_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369888_3370110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3370109_3370391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3370387_3370903_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370902_3371454_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3371432_3371675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371679_3372492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3372491_3372755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372795_3372993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372973_3373390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3373394_3377351_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3377343_3377733_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377729_3378263_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3378330_3378690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378699_3381312_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3381337_3381628_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381645_3381975_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381984_3382503_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382757_3383258_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3383265_3383688_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383684_3384083_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3384079_3384475_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3384474_3384663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384676_3385159_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3385221_3385473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3386147_3387098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3387526_3388129_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3388251_3388494_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3388499_3389555_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389583_3391002_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391004_3392282_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3392268_3392754_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3393393_3394344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3394600_3395290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3395282_3395534_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3396088_3396700_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396771_3396978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3397229_3398180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3398278_3399352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3399519_3400314_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3400353_3400878_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3400870_3402613_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3402822_3403581_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3403583_3404291_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3404307_3405189_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3405199_3405958_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3405926_3406682_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3406751_3408170_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3408191_3408842_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3408975_3409311_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3409399_3410350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3410426_3412247_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3412251_3413325_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3413447_3414416_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3414489_3415401_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3415419_3415992_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3416072_3416621_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416620_3418210_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3418279_3418519_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418559_3419585_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419650_3420832_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420928_3421381_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3421390_3422731_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3423047_3424085_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3424466_3424826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424909_3425851_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425925_3426876_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3427169_3428264_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3428354_3429227_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3429248_3430088_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3430163_3431681_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431777_3432878_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432894_3433317_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3433339_3433552_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433598_3434519_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434701_3435451_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3435453_3435783_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3436070_3437423_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3437434_3437818_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437879_3438680_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438778_3439729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	3600397	3655371	4106491	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3600397_3601348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601464_3602532_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602607_3605736_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606243_3607209_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607211_3607883_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608039_3608999_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609006_3609669_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609665_3610616_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610737_3611991_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611968_3612931_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3613062_3613557_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613556_3614789_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3615534_3615816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615802_3616789_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616932_3617337_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3617478_3620865_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620895_3622359_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3622367_3623996_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3624081_3624741_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624770_3625211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625721_3625925_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3626100_3627006_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3627104_3628055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3628153_3629104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630885_3632079_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3632144_3633173_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3633199_3634372_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3634497_3635475_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3635485_3636457_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3636523_3637309_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3637301_3638534_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638729_3639485_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639595_3640114_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641902_3643303_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3643402_3643747_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643835_3644306_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644716_3645115_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3645246_3646197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648641_3649376_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649785_3649965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3650155_3651469_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3651484_3652996_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3652992_3654198_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3654393_3655371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	3745184	3860854	4106491	protease,transposase,tRNA	Bacillus_phage(12.5%)	100	NA	NA
WP_005013747.1|3745184_3746135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3746257_3746986_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3747082_3748261_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3748257_3749091_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3749127_3749868_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749987_3751163_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3751159_3752113_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3752126_3752528_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3752520_3753126_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3753213_3753378_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3753494_3754343_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3754339_3754993_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3755009_3756293_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3756532_3758158_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3758251_3758653_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758677_3759112_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3759113_3760763_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760803_3761973_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3761975_3762839_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3766202_3766907_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766900_3767695_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767691_3768657_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768660_3769581_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769677_3770841_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3771063_3771954_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771957_3772461_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3772503_3773502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3773498_3774449_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3774537_3774825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3775016_3775967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3776026_3776587_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3778089_3778971_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3779084_3780287_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3780415_3782275_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3782352_3783162_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3783232_3784234_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3784265_3785126_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3785325_3786330_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3786326_3787913_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787921_3788848_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788870_3789497_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3789595_3790546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790542_3791679_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791732_3792509_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3792533_3792992_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3793131_3793773_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793837_3795220_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3795245_3796094_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3796252_3796864_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3796873_3797323_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929718.1|3797989_3798151_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3798226_3798442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3798428_3799379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3800422_3800701_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|3801843_3802392_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929715.1|3802454_3804134_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3804130_3805882_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3805878_3806004_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3806017_3807172_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|3807187_3808765_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3808890_3809436_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3809995_3810946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811676_3812657_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812670_3813795_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813802_3815557_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815663_3816563_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816627_3817611_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817746_3818727_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818743_3820135_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820286_3820823_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820753_3822139_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822281_3822920_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3823006_3824896_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824892_3825834_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825939_3826989_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827241_3827943_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827939_3828638_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828638_3829994_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3829990_3830482_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830500_3831457_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832867_3834970_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835140_3836184_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836227_3836971_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3837992_3838403_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3839352_3840150_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840248_3841199_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841195_3842146_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842232_3843183_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843297_3844299_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844389_3844956_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845274_3847188_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847229_3848660_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848772_3850185_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850201_3850897_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851115_3852066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852090_3852990_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853144_3853693_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853731_3854451_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3854621_3857465_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3858058_3860854_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 27
NZ_CP011702	Bordetella pertussis strain H775 chromosome, complete genome	4106491	4005560	4070471	4106491	transposase	Planktothrix_phage(40.0%)	58	NA	NA
WP_039249574.1|4005560_4006046_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006134_4006272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006264_4007245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007511_4008321_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008360_4009041_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009034_4009493_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009504_4009867_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009949_4010633_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010688_4010997_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011015_4011330_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011326_4013801_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010929497.1|4015195_4015381_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015359_4016061_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016057_4016879_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016859_4017984_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017976_4018996_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019201_4020092_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020336_4021128_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021210_4021585_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021562_4022972_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022964_4024347_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024681_4026286_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026363_4027335_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027345_4028272_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028662_4029613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029782_4031009_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031208_4032075_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032067_4033030_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033130_4034081_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034179_4035130_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035228_4036179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036175_4037669_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037665_4040773_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040769_4043838_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043834_4045085_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045265_4046018_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046059_4046704_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046712_4047693_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047792_4048536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048618_4048966_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049063_4049906_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049950_4050838_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050864_4051053_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051150_4052608_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052594_4054121_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054139_4054607_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054606_4055629_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055749_4056490_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056544_4057645_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057646_4058837_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058956_4059973_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060291_4060963_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060959_4061868_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062079_4062727_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066587_4067655_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067665_4068475_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068564_4069338_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069520_4070471_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
