The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	0	59496	4111638	transposase,tRNA	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_077069004.1|21943_22894_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929576.1|25401_26508_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|27519_28335_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|28331_29282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|29363_29699_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|29723_30158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|30190_31408_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|31413_31911_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|32118_33054_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|33263_34055_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|34097_35519_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|35674_36625_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|36621_37812_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|38061_38973_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|38974_41113_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|41109_41649_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|41652_42381_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|42367_43261_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|43331_43727_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|43736_44267_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|44395_44695_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46248_46797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46768_47005_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47132_48026_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49195_50443_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50439_51054_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51189_52140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52182_53439_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54670_55405_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55410_56001_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56025_56715_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56711_57473_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57552_58452_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58545_59496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	70133	123121	4111638	transposase,tRNA	Planktothrix_phage(20.0%)	50	NA	NA
WP_005012808.1|70133_71084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71177_71492_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72684_74592_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74753_75374_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75405_75987_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76075_76327_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76328_77171_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77276_78686_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78682_79633_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79707_80652_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80648_82523_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83870_84575_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84571_85678_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85939_86533_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86529_87717_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87779_89039_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89062_90151_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90158_91259_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91262_91838_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91841_92894_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93024_94032_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94033_95320_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95516_96320_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96316_97183_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97257_98388_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98387_99227_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100159_100762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100791_101445_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101577_102834_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102914_103781_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103856_104132_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104139_104802_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104863_105865_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105879_106428_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106485_107382_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107378_108440_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108475_109426_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110325_111519_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111600_112230_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112291_112975_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112984_114667_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114954_115302_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115392_115710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115992_117009_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117084_117885_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117881_118757_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118767_120060_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120102_121143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121248_122070_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122170_123121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	165942	226453	4111638	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	234385	287973	4111638	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	391906	449415	4111638	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|418574_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	591469	652660	4111638	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592895_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594803_595295_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595313_596387_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596433_597537_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597612_598233_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598253_598763_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598817_599069_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599132_600266_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600273_600660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600656_603176_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603604_603943_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603939_604446_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604507_605308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605418_606360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606453_607989_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609668_611519_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611522_612356_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612355_613297_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613548_614520_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614661_616950_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617256_618165_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618219_619185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619259_620921_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620992_621703_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621851_622802_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623500_623884_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623941_624544_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624561_624963_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625078_625990_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625986_626568_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627362_628097_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628137_629187_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629334_629913_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630299_631277_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631370_635765_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635965_636814_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636972_637785_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637840_638791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638889_639690_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639751_640135_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640146_641499_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641786_642116_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642118_642868_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643050_643971_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644017_644230_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644252_644675_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644691_645792_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645888_647406_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647481_648321_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648342_649215_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649305_650400_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650693_651644_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651718_652660_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	657984	704175	4111638	terminase,transposase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657984_659010_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659050_659290_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659359_660949_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660948_661497_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661577_662150_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662168_663080_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663153_664122_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664244_665318_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665322_667143_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667219_668170_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668258_668594_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668727_669378_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669399_670818_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670887_671643_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671611_672370_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672380_673262_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673278_673986_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673988_674747_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674956_676699_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676691_677216_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677255_678050_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678217_679291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679389_680340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680591_680798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680869_681481_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682035_682287_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682279_682969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682986_683208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683225_684176_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684815_685301_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685287_686565_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686567_687986_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688014_689070_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689075_689318_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689440_690043_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690471_691422_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692096_692348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692410_692893_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692906_693095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693094_693490_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693486_693885_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693881_694304_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694311_694812_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695066_695585_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695594_695924_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695941_696232_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696257_698870_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698879_699239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699306_699840_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699836_700226_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700218_704175_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	710341	764271	4111638	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710341_712072_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712124_712553_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712555_713236_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713235_713694_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713730_714705_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714721_716038_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716069_716567_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716653_717343_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717342_718392_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718388_719183_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719351_719702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719677_720235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721364_722315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724452_725682_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725684_727127_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727231_728377_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728408_729206_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729230_730790_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730786_733159_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733268_734372_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734371_735064_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735207_735909_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735893_736271_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737002_737953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738112_738985_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739325_739544_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739583_740963_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741004_742402_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742441_744094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744097_744982_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744981_745923_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746001_747621_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747787_748603_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748670_749240_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749240_750191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750845_751943_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751976_753242_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753399_754350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754593_755184_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755199_757644_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757763_758735_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758866_759391_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759350_760301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760522_762718_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762790_763198_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763320_764271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	886860	1027434	4111638	transposase	Bacillus_phage(11.11%)	114	NA	NA
WP_023994644.1|886860_887877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888073_889057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890655_892044_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892074_893064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893174_894407_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894688_895489_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895511_897743_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898530_898977_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898998_899745_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899888_900866_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901499_902111_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902104_903322_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903462_904413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904409_905129_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905249_907409_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907499_907769_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907857_908064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908062_908590_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908608_909388_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909555_910572_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910644_911136_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911146_912862_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914025_914976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914972_916805_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917203_917863_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918390_919071_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919352_920069_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920083_921385_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923529_926418_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926641_927994_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928022_928544_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928540_929995_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930029_930278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930383_931259_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931284_932340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932352_933144_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933176_934547_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935723_936674_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936726_936948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937107_937320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937439_938558_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938654_938870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939063_939315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954832_955807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955931_956843_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957119_957512_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957641_958592_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958621_958804_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959576_960758_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960973_961651_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961647_962373_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962498_963080_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963450_966132_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966134_967265_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967257_968343_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968429_969329_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970668_971340_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973795_974110_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974152_975373_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975369_976311_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976307_977297_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977331_977916_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978014_978965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979045_979957_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980017_981163_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981182_982097_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982168_982918_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982917_983847_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984090_985917_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985999_986641_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986830_987865_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989707_990772_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991569_992478_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993965_995240_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995393_995774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995781_996654_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996959_997340_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997550_998276_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_010929591.1|998371_999322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999426_1000476_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1000613_1001630_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003138_1003711_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003770_1004502_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004553_1005471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006278_1009458_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009454_1010837_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010906_1011158_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011303_1011918_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012104_1014165_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014294_1015146_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015142_1015769_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015765_1017520_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017812_1020518_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020530_1022192_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022204_1023995_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024216_1025392_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025434_1026385_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|1026483_1027434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	1048385	1099047	4111638	transposase,holin,tRNA	uncultured_Mediterranean_phage(50.0%)	42	NA	NA
WP_005012067.1|1048385_1049336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049634_1050372_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050807_1051131_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051165_1051726_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051846_1052722_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052734_1053682_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053783_1054077_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054103_1056161_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056175_1056676_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056749_1058456_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059319_1060372_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060424_1060814_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060822_1061455_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061554_1062571_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1063401_1064409_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064405_1066049_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066045_1066933_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067073_1067547_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067536_1068559_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068555_1069983_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070920_1071937_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072269_1073205_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073254_1075135_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075201_1075546_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075690_1076827_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076823_1077897_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078054_1079491_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079581_1080223_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010930158.1|1080558_1081575_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083515_1084466_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085770_1087192_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087455_1088172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088256_1088574_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088614_1089028_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089029_1089389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089431_1090976_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091059_1091890_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091924_1093079_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093121_1093994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094110_1096399_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097605_1098070_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098096_1099047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	1114301	1179371	4111638	transposase,tRNA	Catovirus(25.0%)	45	NA	NA
WP_010929591.1|1114301_1115252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115832_1116540_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116898_1117885_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118024_1119038_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119034_1119985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1120097_1120556_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120592_1121906_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121923_1122295_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122291_1123755_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123895_1124624_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124605_1127455_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127667_1128618_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128785_1129610_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129609_1130488_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131392_1132508_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132536_1133331_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133327_1135193_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135271_1135904_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135900_1136203_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136245_1137766_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1137772_1138528_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1138557_1139662_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1139764_1141465_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1141446_1142424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1142433_1143714_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1143706_1144402_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1144435_1145263_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1145544_1148775_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1149510_1153437_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023853221.1|1155336_1157133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1157132_1158101_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1158170_1159016_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1159083_1159638_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1159684_1160635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1160733_1161366_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1161528_1163811_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163965_1166662_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1166787_1167276_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1169686_1172557_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1172602_1173817_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1174046_1175474_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1175571_1176663_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1176675_1177434_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1177521_1178424_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1178420_1179371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	1319005	1387492	4111638	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1319005_1319956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1320724_1321363_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1322252_1322699_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1322780_1323482_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1323482_1324250_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1324246_1325485_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1325484_1326411_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1326513_1327629_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1327644_1328595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1328948_1329530_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1329526_1330360_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1330570_1331884_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1332060_1332942_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1332961_1333813_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1333865_1334954_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1335064_1336192_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1336426_1337038_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1337136_1338087_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1338308_1338686_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1338833_1339331_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1339327_1339855_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1339988_1340804_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1340816_1341998_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1342045_1342939_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1343065_1343536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1343661_1344489_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1344517_1345294_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1345290_1345566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1345580_1346045_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1346056_1346758_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1346867_1347368_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1347450_1348629_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1350256_1350592_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1350779_1352228_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1352285_1352630_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1352736_1353276_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1353368_1354319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1354417_1354825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355057_1355489_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355670_1356075_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357311_1357635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357637_1358525_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358557_1358983_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359054_1359408_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359647_1360154_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360192_1361524_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361583_1362399_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1362395_1363250_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366312_1368856_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370222_1371977_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1371973_1374094_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374098_1376294_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376290_1379632_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382434_1383385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1383450_1383630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1383746_1384502_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1384488_1385634_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1386541_1387492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	1447983	1503471	4111638	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1447983_1448934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450135_1450582_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450574_1452050_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452046_1452802_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452794_1453805_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453794_1455471_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455783_1456116_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456129_1456525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456534_1456861_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456857_1457184_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457110_1458133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458129_1458480_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458527_1458956_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1458963_1460337_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460477_1460855_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461117_1462425_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462485_1463316_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463312_1463801_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463842_1465363_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465406_1465883_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466686_1469284_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469313_1470135_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470861_1471611_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471794_1472673_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472770_1473487_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473501_1474062_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474228_1474993_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475012_1475870_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475866_1477066_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477105_1478440_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478492_1480829_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480954_1481518_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481526_1482618_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482689_1483145_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483145_1483940_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483936_1485118_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485104_1485710_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485706_1486480_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486491_1487319_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487480_1489844_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489911_1490631_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490754_1491180_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491214_1492165_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492282_1493209_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493274_1494432_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494412_1494880_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_005015810.1|1495027_1495978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1495994_1496429_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496418_1496769_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1496965_1498120_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498116_1499289_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499336_1500230_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500275_1500713_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500772_1501462_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501471_1502422_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1502520_1503471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	1598167	1658078	4111638	transposase,tRNA	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1598167_1598656_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1598773_1599352_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1599457_1599826_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1599924_1600875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1600881_1601994_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1602680_1603883_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1604086_1606747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1606759_1610164_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1610830_1613056_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1613102_1613429_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1613479_1614088_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1614186_1615137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1615235_1616186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616255_1617020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1617016_1617553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1617719_1618571_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1618630_1619257_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619253_1620204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620302_1621415_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1621404_1622406_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1622511_1624023_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624019_1625324_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1625435_1625996_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626263_1626818_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627273_1627489_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1627743_1630341_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630337_1631525_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1632183_1632798_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1632886_1634008_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634025_1634931_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1635823_1636774_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1636955_1637708_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1637776_1638436_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1638432_1639161_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639173_1641453_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1641477_1641681_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1641722_1642355_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1642490_1643408_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1643404_1644118_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644355_1645126_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645130_1645730_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1645974_1647465_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1647523_1647808_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1648373_1649300_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1649436_1650177_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650343_1651720_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1651901_1652807_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1654458_1656261_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1656378_1657029_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657127_1658078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	1703250	1758841	4111638	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703250_1704201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704259_1705033_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705025_1706582_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1706578_1707529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1708855_1709458_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1709697_1710399_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1710392_1711175_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711359_1712310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1712408_1713146_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713335_1714094_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714140_1715130_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715307_1716276_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1717815_1718784_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1718792_1719734_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720207_1721218_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721208_1722723_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1722719_1724066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1724068_1725103_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725152_1726778_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727330_1728281_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1728385_1729333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1729386_1731201_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731193_1731868_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1731997_1735072_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735085_1735385_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1735699_1736323_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1736566_1737436_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1737413_1738358_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1738443_1739370_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1739482_1740262_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740252_1741449_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1741479_1742430_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1742651_1743341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1743405_1744161_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744212_1745205_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745214_1746168_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746283_1747246_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1748647_1749076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749072_1750023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1750316_1751039_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1751477_1752665_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1752668_1753019_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1754768_1755740_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1755753_1756467_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1756471_1757389_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1757495_1757792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1757890_1758841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	1991604	2061256	4111638	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1991604_1994262_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994339_1995542_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1995538_1996051_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996173_1996611_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1996887_1997838_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1997936_1998887_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1999050_2000946_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|2001059_2001227_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001290_2001527_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|2001895_2003047_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2004610_2005561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2006012_2007014_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2007186_2008044_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2008040_2009303_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2009403_2009778_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|2009850_2011038_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2011122_2011893_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2012006_2012771_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2012721_2014023_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|2014019_2014826_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|2016570_2017542_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017698_2018211_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2018369_2019344_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2020344_2021139_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2021164_2021971_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2022081_2022672_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2022682_2023861_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2023963_2024338_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2024590_2025922_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2025988_2029219_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2030709_2031456_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2031540_2032002_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2032039_2033098_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2033060_2034890_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2034929_2035502_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2036926_2037748_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2038066_2039389_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2039748_2040384_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2040343_2041294_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2042164_2043037_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2043114_2044254_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2044612_2045869_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2045874_2046402_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2046406_2047225_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2047224_2047947_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2047968_2048283_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2048300_2049449_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2049479_2050355_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2050351_2051671_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2051743_2052940_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2052950_2054438_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2057032_2057932_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2058069_2059035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2059133_2060084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2060305_2061256_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2072752	2122148	4111638	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2072752_2073703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2074840_2075137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2075311_2076664_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2076806_2077823_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2079802_2080816_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2080902_2081808_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2081964_2082309_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2082466_2082925_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2082938_2085155_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2085151_2086213_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2086241_2087216_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2087167_2087986_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2087998_2088607_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2088781_2089177_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2089195_2090635_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2090663_2091011_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2091029_2091980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2092632_2093583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2093666_2095484_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2095557_2096205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2096217_2097147_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2097316_2097781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2098028_2098709_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2098757_2100449_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2100464_2101016_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2101012_2101384_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2101496_2102333_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2102343_2102868_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2102965_2103145_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2103274_2104249_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2104379_2104736_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2104725_2105601_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2105699_2106584_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2106605_2107901_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2108849_2109500_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2109587_2111108_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2111365_2113231_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2114276_2115227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2115244_2115385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2116199_2116559_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2116546_2117983_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2117979_2118633_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2118629_2119823_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2119926_2121201_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2121197_2122148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2133352	2174043	4111638	protease,transposase,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2133352_2134303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2134401_2135352_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2135311_2135725_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2136009_2136309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2136718_2139001_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2139466_2139661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2139686_2141717_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2141736_2141949_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2142226_2142766_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2142879_2144175_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2144251_2145409_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2145592_2146492_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2146510_2147815_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2147780_2148887_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2148974_2149211_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2149349_2150420_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2150423_2151779_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2151805_2152963_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2152968_2153607_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2153608_2154904_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2154953_2156240_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2156255_2156762_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2156758_2157907_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2157934_2158360_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2158682_2161565_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2161657_2162413_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2163178_2164528_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2164626_2165577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2165675_2166626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2166699_2167173_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2167198_2168407_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2168403_2169177_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2169176_2169800_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2169965_2170226_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2170529_2171111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2171177_2171432_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2171418_2174043_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2201826	2315488	4111638	protease,transposase,tRNA	Lake_Baikal_phage(11.54%)	100	NA	NA
WP_010929577.1|2201826_2202777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2202977_2203787_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2203911_2204862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2204858_2205752_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2205876_2206071_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2206070_2206412_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2206421_2208284_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2208413_2208926_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2208928_2209252_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2209253_2209664_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2209701_2210913_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2210930_2211443_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2211658_2212150_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2212402_2214439_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2214516_2215719_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2215847_2216498_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2218055_2219006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2219576_2219789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2219806_2220538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2220572_2221214_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2221206_2221875_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2224087_2224864_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2224885_2226043_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2226039_2226471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2226467_2227265_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2227284_2227686_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2227752_2228724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2228789_2230013_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2230240_2231191_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2231314_2233768_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2233956_2235261_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2235365_2236019_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2236021_2237332_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2237510_2238089_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2238200_2238401_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2238746_2239313_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2239396_2239600_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2239906_2240227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2240268_2240550_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2240624_2241881_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2242263_2242593_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2244163_2244985_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2244984_2246124_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2246130_2247027_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2247041_2248949_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2249308_2251921_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2251973_2254274_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2254270_2255479_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2255740_2256115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2256111_2257062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2257160_2259155_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2259214_2260180_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2260169_2263031_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2263033_2263540_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2263644_2264853_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2264854_2265793_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2265954_2266428_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2266424_2267375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2267485_2268436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2268534_2268975_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2269103_2270333_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2270371_2271193_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2271246_2272398_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2272489_2272978_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2275528_2278078_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2278148_2280722_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2280987_2281188_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2281219_2281381_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2281438_2281777_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2281925_2282876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2282974_2283925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2284699_2285368_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2285349_2287305_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2287547_2288297_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2288309_2289173_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2289176_2290592_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2290725_2291454_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2291592_2291793_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2291968_2292367_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2292390_2293791_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2293909_2294662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2294950_2295628_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2295654_2296434_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2296430_2297315_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2297332_2298112_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2298096_2298855_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2298992_2299628_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2299895_2300912_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2301009_2302050_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2302184_2303477_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2304836_2305220_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2305237_2305825_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2305862_2306813_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2306911_2307472_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2307468_2308014_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2308209_2309238_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2309278_2310619_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2310727_2311732_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2311838_2314439_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2314537_2315488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2354601	2418179	4111638	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2354601_2355552_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2355853_2356330_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2356953_2358591_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2358621_2359935_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2360068_2360386_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2360486_2361809_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2361805_2362756_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2362854_2363805_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2364334_2365357_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2365385_2366216_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2366232_2367930_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2367994_2369071_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2369230_2370094_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2370124_2370694_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2370710_2371562_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2372619_2373501_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2373575_2374565_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2374627_2375578_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2375640_2376498_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2376557_2377046_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2378618_2379809_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2379805_2381392_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2381410_2382478_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2382582_2384127_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2384546_2386121_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2386237_2387245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2387241_2388081_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2388085_2389723_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2389719_2390670_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2390812_2392087_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2392116_2392407_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2392479_2393493_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2393512_2394775_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2394777_2395701_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2395697_2397191_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2397201_2398134_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2398315_2399641_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2399675_2401031_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2401091_2402612_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2402766_2403498_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2403595_2404906_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2404921_2405833_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2405823_2406417_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2406478_2406865_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2406876_2407347_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2407358_2407982_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2408002_2410750_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2417228_2418179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2538327	2604047	4111638	protease,transposase,tRNA	Salmonella_phage(15.38%)	59	NA	NA
WP_023853254.1|2538327_2540271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566380.1|2540267_2541188_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930928.1|2541207_2541795_-	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_003813784.1|2541787_2542678_-	GTPase Era	NA	NA	NA	NA	NA
WP_023853248.1|2542674_2543436_-	ribonuclease III	NA	M4QNJ2	Ostreococcus_lucimarinus_virus	33.0	3.1e-20
WP_010930929.1|2543441_2544326_-	signal peptidase I	NA	NA	NA	NA	NA
WP_010930930.1|2544348_2546142_-	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	23.5	8.4e-24
WP_004566381.1|2546272_2547760_-|protease	DegQ family serine endoprotease	protease	W5SAB9	Pithovirus	31.5	1.2e-07
WP_010930931.1|2547797_2548856_-	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_023853242.1|2548855_2549356_-	sigma-E factor negative regulatory protein	NA	NA	NA	NA	NA
WP_003813797.1|2549368_2549968_-	RNA polymerase sigma factor RpoE	NA	A0A0F6TH34	Sinorhizobium_phage	26.1	2.2e-05
WP_010930933.1|2549964_2550465_-	membrane protein	NA	NA	NA	NA	NA
WP_003813802.1|2550466_2551696_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_003813816.1|2551885_2552125_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	46.6	5.4e-11
WP_003813819.1|2552307_2553060_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	6.9e-12
WP_010930934.1|2553061_2553997_-	ACP S-malonyltransferase	NA	NA	NA	NA	NA
WP_010930935.1|2554078_2555065_-	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_003821347.1|2555064_2556123_-	phosphate acyltransferase PlsX	NA	NA	NA	NA	NA
WP_003813827.1|2556179_2556362_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_010930936.1|2556413_2557007_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_003821345.1|2557115_2557715_+	septum formation protein Maf	NA	NA	NA	NA	NA
WP_010930937.1|2557711_2558422_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930938.1|2558423_2559251_+	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA	NA
WP_003814009.1|2561067_2562309_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2562320_2563094_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2563120_2564071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2564169_2564952_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2565040_2566267_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2566992_2568378_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2568396_2569002_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2568998_2570855_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2570851_2571652_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2571666_2572860_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2572927_2573902_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2574024_2575248_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2575358_2577563_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2577857_2578517_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2578524_2578731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2579069_2579825_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2580095_2580611_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2580883_2581201_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2581388_2581625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2581915_2583271_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2583317_2584658_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2584759_2585392_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2585391_2587761_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2587793_2588753_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2588739_2589426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2589422_2589755_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2589870_2590821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2590919_2591870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2591866_2593933_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2593932_2594205_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2594899_2594989_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2594988_2596773_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2596796_2598962_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2598972_2599572_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2602392_2603088_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2603096_2604047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2690164	2730833	4111638	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2690164_2691115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2691225_2691408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2691507_2692104_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2692287_2693379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2693878_2694289_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2694347_2694677_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2694694_2697112_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2697124_2698147_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2698221_2698581_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2698596_2698794_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2699129_2700080_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2700274_2700724_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2700720_2701671_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2701781_2703230_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2703344_2703590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2703729_2704680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2704924_2705638_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2705760_2705988_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2706282_2706921_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2707029_2708064_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2708060_2709011_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2709426_2709951_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2709954_2710224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2710422_2711484_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2711567_2713202_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2713203_2714007_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2714035_2714995_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2714998_2716513_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2716549_2717554_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2717985_2718456_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2718491_2719103_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2719133_2719757_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2719837_2721370_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2721404_2722622_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2722689_2723721_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2723717_2724887_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2724880_2725561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2725722_2726565_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2726727_2727699_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2727870_2728749_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2728771_2729842_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2729882_2730833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2734944	2817078	4111638	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2734944_2735895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2736644_2737058_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2737071_2738307_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2738314_2739109_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2739105_2739909_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2739935_2740913_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2740941_2742513_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2742523_2743345_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2745069_2746500_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2746512_2747202_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2747297_2748638_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2748639_2748897_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2749250_2750843_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2750939_2752400_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2752622_2753234_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2756980_2757931_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2758346_2760983_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2760979_2762104_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2762100_2763483_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2763618_2764086_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931045.1|2764946_2766149_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2766150_2767881_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2767998_2768307_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2768319_2769132_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2770012_2772178_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2772303_2773092_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2773131_2774736_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2774816_2775557_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2775564_2776059_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2776431_2777451_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2777447_2778830_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2778862_2779723_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2780726_2781608_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2781666_2782104_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2782194_2783166_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2783204_2784149_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2784244_2785054_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2785130_2785505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2785611_2786304_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2786296_2786713_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2786823_2787456_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2787484_2787928_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2787949_2789041_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2789095_2789896_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2790031_2790652_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2790791_2791265_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2792404_2793355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2793351_2801013_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2801253_2805300_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2805612_2806194_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2806190_2807489_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2807568_2808597_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2808857_2809808_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2809804_2810755_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811071_2811677_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811730_2813044_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813118_2813589_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813588_2814377_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814387_2816040_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816127_2817078_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2841003	2888712	4111638	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2841003_2841954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842088_2843195_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843205_2844303_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844447_2845653_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845659_2846181_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846177_2846660_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846665_2846917_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846897_2847383_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847518_2850980_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2850997_2851882_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851891_2852323_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852569_2853073_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853150_2854551_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854625_2855501_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855497_2856505_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856972_2857278_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857368_2857959_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858149_2859166_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859357_2861694_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861776_2862211_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862309_2863260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863358_2864309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2864305_2865100_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2865131_2865836_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2865910_2866711_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2866707_2867115_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2867111_2867753_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2867745_2869746_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2871006_2872338_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2872334_2873285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874991_2875258_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875965_2876304_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880857_2881460_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881556_2882846_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882903_2883635_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883631_2884435_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884431_2885520_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885516_2886446_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886594_2887740_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887761_2888712_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2896709	2960457	4111638	transposase,protease	uncultured_Mediterranean_phage(22.22%)	55	NA	NA
WP_010931114.1|2896709_2899025_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899080_2901249_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901245_2906426_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906524_2906839_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907066_2907312_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907406_2907925_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908024_2909230_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909345_2910743_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910859_2911438_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911510_2912902_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913069_2914020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914300_2914921_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914917_2915331_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915327_2916371_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916426_2916615_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916624_2917389_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917479_2918136_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918227_2918986_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919011_2920613_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920813_2921818_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921918_2922182_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922299_2923076_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923666_2924617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2927000_2928113_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928169_2929120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2929328_2929550_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2929763_2931170_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2931166_2932471_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2932467_2933655_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2933871_2934324_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2934326_2934791_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2934870_2936550_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2936654_2937632_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2937711_2938680_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2938700_2940074_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2940070_2940907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2941023_2941479_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2941494_2941767_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2941859_2942183_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2942230_2942611_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2942830_2943628_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2943784_2945647_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2945696_2946608_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2946612_2946879_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2946965_2947796_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2947970_2948936_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2949106_2950117_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2950264_2951416_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2952558_2954031_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2954041_2954452_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2954515_2955562_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2955668_2956547_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2956560_2957757_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2957818_2959510_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2959506_2960457_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	2969216	3028396	4111638	transposase	Bacillus_virus(28.57%)	57	NA	NA
WP_010930176.1|2969216_2970167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970247_2971396_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971452_2972403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972501_2972807_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972835_2973270_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973271_2974516_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974512_2975223_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975237_2976149_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976511_2976916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976912_2977371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977377_2978286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978282_2979149_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979135_2979963_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979973_2981101_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982178_2983417_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983458_2984721_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984727_2985480_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985531_2985717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985992_2986457_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986488_2987148_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987292_2989401_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989397_2990348_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990451_2991072_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991175_2991916_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993050_2994175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994220_2994589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994830_2995781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996816_2997359_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997556_2997727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997744_2998695_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998691_2999600_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999726_3000563_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001075_3002185_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002246_3003197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3003389_3004172_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3004185_3004950_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3004962_3006309_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3006334_3007264_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3007379_3008285_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3008302_3009502_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3009574_3010267_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3010315_3012742_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3012786_3013737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3013953_3014322_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3014608_3015535_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3015578_3016589_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3016585_3017020_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3018145_3018934_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3018943_3019726_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3019729_3020821_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3020926_3022402_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3022543_3023092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3023107_3023569_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3023669_3024659_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3024957_3025659_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3025697_3027071_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3027109_3028396_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	3384191	3504436	4111638	transposase,tRNA	Acinetobacter_phage(20.0%)	99	NA	NA
WP_023995489.1|3384191_3385142_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385546_3386191_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386215_3386800_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3386900_3387518_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387520_3389236_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389232_3389541_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389557_3390175_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390219_3390522_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390622_3391477_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391664_3391889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392058_3392331_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392748_3393156_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393525_3394320_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394420_3395656_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395724_3396741_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396752_3398129_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398125_3399322_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399318_3400857_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3400853_3402113_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404053_3405004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405770_3406865_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3406857_3408192_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408145_3408829_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3408854_3410018_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3410014_3411016_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411015_3411888_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3411884_3412634_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412630_3413422_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413418_3414558_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3414833_3415619_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415652_3416435_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416438_3416828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3417967_3418831_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3418866_3419955_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3419951_3420902_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421255_3424234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425160_3426039_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3427003_3427954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3429036_3429987_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429983_3430451_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3430493_3431264_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3431284_3432085_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3432095_3433505_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3433599_3434385_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3434624_3435641_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3435748_3436141_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3436278_3436959_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436963_3437935_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3438030_3438981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3440485_3441187_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3441186_3442611_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3443680_3445021_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3445136_3446900_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3447011_3447890_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3448002_3448818_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3448821_3449073_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3449157_3450174_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3450504_3450726_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3453086_3454004_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3454501_3455710_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3455789_3457361_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3457478_3458414_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3458602_3459547_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3460114_3465832_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3465837_3466965_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3467020_3467647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3467918_3468935_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3469030_3469741_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3469737_3470727_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3470822_3472454_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3472456_3473194_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3473349_3474222_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3474571_3475711_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3475707_3476367_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3476438_3477071_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3477100_3477619_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3477629_3478739_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3478785_3479640_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3479641_3480544_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3481766_3482717_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3484473_3485463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3485638_3486427_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3486423_3487455_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3487473_3488037_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3488092_3489613_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3489876_3490581_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3490588_3491317_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3491431_3491806_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3491848_3493138_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3493134_3494304_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3494300_3495140_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3495199_3496135_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3496147_3497098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3497196_3498159_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3498190_3498550_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3498674_3499577_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3499578_3501351_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3501385_3502162_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3503485_3504436_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	3519374	3577447	4111638	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3519374_3520325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3520453_3521587_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3521630_3522536_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3522538_3524239_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3524235_3525156_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3525163_3526141_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3526199_3527234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3529208_3529445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3529571_3530435_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3530523_3531345_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3531424_3532162_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3532158_3533151_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3533303_3533927_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533971_3535120_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3537443_3538394_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3538734_3539685_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3539783_3540734_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3541030_3541528_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3541570_3543346_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3543353_3544220_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3544226_3544961_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3546130_3546925_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3547214_3547805_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3547838_3549167_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3549241_3550387_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3550498_3551497_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3551459_3551894_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3553410_3554295_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3554291_3555497_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3555493_3556354_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3556466_3558257_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3558297_3558942_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3558963_3559272_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3559437_3560724_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3562157_3563108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3565059_3566274_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3566379_3567369_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3567365_3567974_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567986_3568616_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3568612_3569233_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3569264_3570056_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570907_3571363_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3571381_3572308_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3572361_3573648_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3574578_3575451_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3575447_3576398_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3576496_3577447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011701	Bordetella pertussis strain H773 chromosome, complete genome	4111638	4010707	4075618	4111638	transposase	Planktothrix_phage(40.0%)	58	NA	NA
WP_039249574.1|4010707_4011193_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4011281_4011419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4011411_4012392_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4012658_4013468_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4013507_4014188_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4014181_4014640_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4014651_4015014_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4015096_4015780_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4015835_4016144_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4016162_4016477_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4016473_4018948_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010929497.1|4020342_4020528_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4020506_4021208_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4021204_4022026_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4022006_4023131_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4023123_4024143_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4024348_4025239_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4025483_4026275_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4026357_4026732_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4026709_4028119_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4028111_4029494_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4029828_4031433_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4031510_4032482_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4032492_4033419_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4033809_4034760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4034929_4036156_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4036355_4037222_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4037214_4038177_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4038277_4039228_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4039326_4040277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4040375_4041326_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4041322_4042816_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4042812_4045920_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4045916_4048985_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4048981_4050232_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4050412_4051165_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4051206_4051851_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4051859_4052840_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4052939_4053683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4053765_4054113_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4054210_4055053_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4055097_4055985_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4056011_4056200_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4056297_4057755_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4057741_4059268_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4059286_4059754_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4059753_4060776_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4060896_4061637_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4061691_4062792_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4062793_4063984_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4064103_4065120_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4065438_4066110_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4066106_4067015_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4067226_4067874_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4071734_4072802_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4072812_4073622_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4073711_4074485_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4074667_4075618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
