The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	27282	70036	4104260	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	77634	136108	4104260	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_023999620.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	164894	225405	4104260	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189531_190005_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193075_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211156_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219055_221998_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	233338	286926	4104260	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233338_234289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234375_235326_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235322_236273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236371_237169_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238118_238529_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239550_240294_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240337_241381_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241551_243654_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245064_246021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246039_246531_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246527_247883_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247883_248582_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248578_249280_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249532_250582_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250687_251629_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251625_253515_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253601_254240_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254382_255768_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255698_256235_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256386_257778_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257794_258775_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258910_259894_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259958_260858_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260964_262719_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262726_263851_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263864_264845_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265575_266526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267085_267631_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267714_269334_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269349_270504_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270517_270643_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270639_272391_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272387_274067_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274129_274678_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275820_276099_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277142_278093_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278370_278532_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278539_278680_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279198_279648_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279657_280269_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280427_281282_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281301_282684_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282748_283390_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283529_283988_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284012_284789_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284842_285979_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285975_286926_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	676451	737641	4104260	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|676451_677402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|677898_678768_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|678764_679586_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|679784_680276_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|680294_681368_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|681414_682518_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|682593_683214_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|683234_683744_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|683798_684050_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|684113_685247_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|685254_685641_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|685637_688157_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|688585_688924_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|688920_689427_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|689488_690289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|690399_691341_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|691434_692970_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|694649_696500_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|696503_697337_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|697336_698278_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|698529_699501_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|699642_701931_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|702237_703146_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|703200_704166_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|704240_705902_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|705973_706684_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|706832_707783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|708481_708865_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|708922_709525_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|709542_709944_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|710077_710971_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|710967_711549_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|712343_713078_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|713118_714168_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|714315_714894_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|715280_716258_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|716351_720746_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|720946_721795_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|721953_722766_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|722821_723772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|723870_724671_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|724732_725116_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|725127_726561_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|726767_727097_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|727099_727849_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|728031_728952_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|728998_729211_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|729233_729656_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|729672_730773_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|730869_732387_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|732462_733302_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|733323_734205_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|734286_735381_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|735674_736625_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|736699_737641_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	742965	789156	4104260	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|742965_743991_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|744031_744271_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|744340_745930_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|745929_746478_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|746558_747131_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|747149_748061_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|748134_749103_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|749225_750299_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|750303_752124_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|752200_753151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|753239_753575_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|753708_754359_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|754380_755799_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|755868_756624_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|756592_757351_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|757361_758243_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|758259_758967_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|758969_759728_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|759937_761680_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|761672_762197_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|762236_763031_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|763198_764272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|764370_765321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|765572_765779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|765850_766462_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|767016_767268_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|767260_767950_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|768206_769157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|769796_770282_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|770268_771546_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|771548_772967_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|772995_774051_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|774056_774299_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|774421_775024_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|775452_776403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|777077_777329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|777391_777874_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|777875_778076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|778075_778471_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|778467_778866_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|778862_779285_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|779292_779793_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|780047_780566_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|780575_780905_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|780922_781213_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|781238_783851_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|783860_784220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|784287_784821_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|784817_785207_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|785199_789156_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 7
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	795322	850300	4104260	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|795322_797053_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|797105_797534_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|797536_798217_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|798216_798675_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|799701_801018_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|801049_801547_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|801633_802323_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|802322_803372_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|803368_804163_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|804331_804682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|804657_805215_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|806344_807295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|809432_810662_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|810664_812107_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|812211_813357_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|813388_814186_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|814210_815770_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|815766_818139_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|818248_819352_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|819351_820044_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|820187_820889_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|820873_821251_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|821982_822933_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|823092_823965_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|824305_824524_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|824563_825943_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|825984_827382_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|827421_829074_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|829077_829962_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|829961_830903_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|830981_832601_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|832767_833583_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|833650_834220_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|834220_835171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|835825_836923_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|836956_838222_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|838379_839330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|839428_840379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|840622_841213_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|841228_843673_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|843792_844764_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|844895_845420_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|845379_846330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|846551_848747_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|848819_849248_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|849349_850300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	901893	950915	4104260	transposase,holin	Acinetobacter_phage(25.0%)	43	NA	NA
WP_005013747.1|901893_902844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|902942_903893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|903991_904648_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|904795_907504_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|907513_908533_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|908529_909480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|909578_910067_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|910063_910747_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|910776_914232_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|914267_915128_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|915256_916174_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|916311_917292_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|917351_919142_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|919138_919915_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|919924_920443_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|920555_922826_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|923037_925269_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|925569_925899_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|925915_927400_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|927410_928913_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|928909_930922_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|930939_931248_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|931244_931892_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|931909_932398_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|932419_933493_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|933492_935820_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|935835_937203_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|937199_937694_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|937739_938996_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|938998_939622_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|939696_940173_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|940209_940569_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|940757_941915_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|942227_943178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|943195_943750_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|943751_944186_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|944182_944617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|944600_945404_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|945420_946236_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|946232_947048_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|947194_947896_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|947923_949882_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|949964_950915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	973938	1089751	4104260	transposase,holin	Bacillus_phage(12.5%)	98	NA	NA
WP_023994644.1|973938_974955_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|975151_976135_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|977733_979122_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|979152_980142_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|980252_981485_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|981766_982567_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|982589_984821_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|985608_986055_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|986076_986823_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|986966_987944_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|988577_989189_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|989182_990400_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|990540_991491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|991487_992207_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|992327_994487_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|994577_994847_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|995140_995668_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|995686_996466_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|996633_997650_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|997722_998214_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|998224_999940_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|1001103_1002054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|1002050_1003883_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|1004281_1004941_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|1005034_1005181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|1005289_1005457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|1005468_1006149_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|1006430_1007147_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|1007161_1008463_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|1010607_1013496_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|1013719_1015072_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|1015100_1015622_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|1015618_1017073_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|1017107_1017356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|1017461_1018337_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|1018362_1019418_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|1019430_1020222_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|1020254_1021625_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929969.1|1022801_1023752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1023850_1024801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|1024853_1025075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|1025234_1025447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|1025566_1026685_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|1027190_1027442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|1027554_1028505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|1028501_1028885_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|1028939_1030754_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|1030903_1031731_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|1031776_1032757_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|1032753_1032966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|1032962_1034144_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|1034307_1035042_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|1035043_1037656_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|1037791_1039705_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|1040320_1040731_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|1040828_1041914_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|1042012_1042963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|1042959_1043934_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|1044058_1044970_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|1045246_1045639_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|1045768_1046719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|1046748_1046931_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|1047703_1048885_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|1049100_1049778_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|1049774_1050500_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|1050625_1051207_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|1051577_1054259_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|1054258_1055392_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|1055384_1056470_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|1056556_1057456_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|1057452_1058781_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|1058795_1059467_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|1059654_1061370_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|1061371_1061731_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|1061922_1062237_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|1062279_1063500_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|1063496_1064438_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|1064434_1065424_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|1065458_1066043_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1066141_1067092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|1067172_1068084_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|1068144_1069290_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|1069309_1070224_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|1070295_1071045_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|1071044_1071974_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|1072217_1074044_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|1074126_1074768_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|1074990_1075992_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|1077828_1078893_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|1079690_1080599_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|1082086_1083361_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|1083514_1083895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|1083902_1084775_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|1085080_1085461_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|1085671_1086397_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1086492_1087443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1087547_1088597_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1088734_1089751_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	1113553	1168645	4104260	transposase,tRNA	uncultured_Mediterranean_phage(37.5%)	51	NA	NA
WP_010929584.1|1113553_1114504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1114602_1115343_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1115537_1117574_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1117591_1118602_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1118719_1119913_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1119942_1120716_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1120712_1121903_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1121928_1122867_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1122863_1125212_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1125366_1126008_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1126111_1127245_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1127337_1127490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1127521_1128070_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1128088_1128574_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1128751_1129690_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1129692_1130010_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1130055_1131000_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1132680_1133331_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1133384_1133720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1133716_1134577_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1134593_1134875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1134948_1135212_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1135455_1136406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1136704_1137442_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1137877_1138201_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1138235_1138796_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1138916_1139792_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1139804_1140752_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1140853_1141147_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1141173_1143231_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1143245_1143746_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1143819_1145526_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1146389_1147442_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1147494_1147884_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1147892_1148525_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1148624_1149641_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1150429_1151479_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1151475_1153119_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1153115_1154003_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1154143_1154617_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1154606_1155629_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1155625_1157053_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1157990_1159007_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1159339_1160275_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1160324_1162205_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1162271_1162616_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1162760_1163897_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1163893_1164967_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1165124_1166561_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1166651_1167293_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1167628_1168645_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	1174635	1246656	4104260	protease,transposase,tRNA,holin	Planktothrix_phage(18.18%)	57	NA	NA
WP_003819794.1|1174635_1175049_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1175050_1175410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1175452_1176997_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1177080_1177911_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1177945_1179100_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1179142_1180015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1180131_1182420_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1183626_1184091_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1184117_1185068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1185085_1185223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1185435_1186212_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1186256_1187114_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1187135_1188152_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1188286_1189327_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1189521_1191603_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1191838_1193332_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1193562_1194357_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1194577_1195936_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1195932_1196775_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1196793_1198680_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1198621_1198873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1198917_1199550_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1199568_1200171_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1200322_1201273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1201853_1202561_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1202919_1203906_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1204045_1205059_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1205055_1206006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1206118_1206577_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1206613_1207927_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1207944_1208316_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1208312_1209776_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1209916_1210645_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1210626_1213476_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1213688_1214639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1214806_1215631_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1215630_1216509_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1217413_1218529_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1218557_1219352_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1219348_1221214_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1221292_1221925_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1221921_1222224_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1222266_1223787_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010926447.1|1223793_1224549_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010926448.1|1224578_1225683_-	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010930191.1|1225785_1227486_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010930192.1|1227467_1228445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247537.1|1228454_1229735_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003812422.1|1229727_1230423_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_010928340.1|1230456_1231284_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930194.1|1231565_1234796_+	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010930196.1|1235531_1239458_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_023995083.1|1242290_1243154_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_019248398.1|1243153_1244122_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1244191_1245037_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1245104_1245659_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1245705_1246656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	1406077	1474564	4104260	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1406077_1407028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1407796_1408435_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1409324_1409771_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1409852_1410554_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1410554_1411322_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1411318_1412557_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1412556_1413483_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1413585_1414701_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1414716_1415667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1416020_1416602_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1416598_1417432_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1417642_1418956_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1419132_1420014_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1420033_1420885_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1420937_1422026_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1422136_1423264_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1423498_1424110_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1424208_1425159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1425380_1425758_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1425905_1426403_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1426399_1426927_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1427060_1427876_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1427888_1429070_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1429117_1430011_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1430137_1430608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1430733_1431561_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1431589_1432366_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1432362_1432638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1432652_1433117_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1433128_1433830_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1433939_1434440_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1434522_1435701_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1437328_1437664_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1437851_1439300_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1439357_1439702_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1439808_1440348_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1440440_1441391_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1441489_1441897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1442129_1442561_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1442742_1443147_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1444383_1444707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1444709_1445597_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1445629_1446055_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1446126_1446480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1446719_1447226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1447264_1448596_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1448655_1449471_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1449467_1450322_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1453384_1455928_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1457294_1459049_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1459045_1461166_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1461170_1463366_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1463362_1466704_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1469506_1470457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1470522_1470702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1470818_1471574_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1471560_1472706_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1473613_1474564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	1535055	1590543	4104260	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1535055_1536006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1537207_1537654_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1537646_1539122_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1539118_1539874_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1539866_1540877_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1540866_1542543_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1542855_1543188_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1543201_1543597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1543606_1543933_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1543929_1544256_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1544182_1545205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1545201_1545552_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1545599_1546028_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1546035_1547409_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1547549_1547927_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1548189_1549497_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1549557_1550388_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1550384_1550873_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1550914_1552435_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1552478_1552955_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1553758_1556356_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1556385_1557207_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1557933_1558683_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1558866_1559745_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1559842_1560559_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1560573_1561134_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1561300_1562065_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1562084_1562942_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1562938_1564138_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1564177_1565512_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1565564_1567901_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1568026_1568590_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1568598_1569690_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1569761_1570217_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1570217_1571012_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1571008_1572190_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1572176_1572782_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1572778_1573552_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1573563_1574391_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1574552_1576916_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1576983_1577703_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1577826_1578252_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1578286_1579237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1579354_1580281_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1580346_1581504_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1581484_1581952_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1582099_1583050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1583066_1583501_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1583490_1583841_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1584037_1585192_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1585188_1586361_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1586408_1587302_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1587347_1587785_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1587844_1588534_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1588543_1589494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1589592_1590543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	1883113	1931128	4104260	transposase,tRNA	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1883113_1884064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1884162_1886763_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1886869_1887874_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1887982_1889323_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1889363_1890392_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1890587_1891133_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1891129_1891690_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1891788_1892739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1892776_1893364_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1893381_1893765_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1895124_1896417_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1896551_1897592_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1897689_1898706_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1898973_1899621_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1899746_1900505_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1900489_1901269_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1901286_1902171_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1902167_1902947_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1903051_1903651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1903939_1904692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1904810_1906211_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1906234_1906633_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1906808_1907009_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1907147_1907876_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1908009_1909425_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1909428_1910292_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1910304_1911054_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1911236_1913252_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1913233_1913902_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1914676_1915627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1915725_1916676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1916824_1917163_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1917220_1917382_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1917413_1917614_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1917879_1920453_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1920523_1923073_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1925623_1926112_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1926203_1927355_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1927408_1928230_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1928268_1929498_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1929626_1930067_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1930177_1931128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	1992699	2051969	4104260	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1992699_1993650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1993774_1994584_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1994784_1995735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1997008_1998226_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1999282_2000185_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2000261_2001134_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2001264_2001633_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2001690_2002737_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2002932_2004189_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2004193_2005531_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2005680_2006637_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2006739_2007672_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2007787_2008108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2008100_2008460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2008507_2010082_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2010134_2011079_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2011096_2011927_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2011919_2013554_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2013550_2014906_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2015812_2017390_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2017393_2018668_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2018765_2019140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2020855_2021989_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2022026_2022632_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2022628_2023447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2023518_2026143_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2026129_2026384_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2026450_2027032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2027335_2027596_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2027761_2028385_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2028384_2029158_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2029154_2030363_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2030388_2030862_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2030935_2031886_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2031984_2032935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2033033_2034383_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2035148_2035904_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2035996_2038879_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2039201_2039627_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2039654_2040803_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2040799_2041306_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2041312_2042608_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2042666_2043953_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2043954_2044593_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2044595_2045756_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2045782_2047138_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2047141_2048212_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2048350_2048587_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2048674_2049781_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2049746_2051051_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2051069_2051969_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2062209	2106532	4104260	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|2062209_2063160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2063258_2064209_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2064408_2065494_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2065509_2066271_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2066267_2067227_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2067289_2067790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2067822_2068566_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2068661_2068901_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2068914_2069067_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2069152_2070643_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2070734_2071673_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2071669_2071846_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2071848_2072511_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2074132_2074276_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2074272_2075247_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|2075413_2076364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2076360_2077635_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2077738_2078932_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2078928_2079582_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2079578_2081015_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2081002_2081362_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2082176_2082317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2082334_2083285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2084330_2086196_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2086453_2087974_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2088061_2088712_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2089660_2090956_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2090977_2091862_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2091960_2092836_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2092825_2093182_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2093312_2094287_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2094416_2094596_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2094693_2095218_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2095228_2096065_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2096177_2096549_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2096545_2097097_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2097112_2098804_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2098852_2099533_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2099780_2100245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2100414_2101344_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2101356_2102004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2102077_2103895_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2103978_2104929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2105581_2106532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2135266	2199635	4104260	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2135266_2136217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2136438_2137389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2137487_2138453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2138590_2139490_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2142084_2143572_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2143582_2144779_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2144851_2146171_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2146167_2147043_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2147073_2148222_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2148239_2148554_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2148575_2149298_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2149297_2150116_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2150120_2150648_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2150653_2151910_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2152268_2153408_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2153485_2154358_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2155228_2156179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2156138_2156774_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2157133_2158456_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2158774_2159596_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2161020_2161593_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2161632_2163462_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2163424_2164483_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2164520_2164982_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2165066_2165813_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2167303_2170534_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2170600_2171932_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2172184_2172559_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2172661_2173840_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2173850_2174441_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2174551_2175358_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2175383_2176178_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2177178_2178153_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2178311_2178824_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2178980_2179952_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2181696_2182503_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2182499_2183801_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2183751_2184516_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2184629_2185400_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2185484_2186672_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2186744_2187119_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2187219_2188482_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2188478_2189336_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2189508_2190510_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2190961_2191912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2193427_2194627_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2194995_2195232_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2195295_2195463_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2195576_2197382_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2197635_2198586_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2198684_2199635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2386102	2447450	4104260	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2386102_2387053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2387169_2387889_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2388061_2389048_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2389048_2389531_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2389534_2390818_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2390814_2391753_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2391749_2393459_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2393468_2394716_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2396326_2397616_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2398753_2399512_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2400188_2400932_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2401006_2401747_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2401942_2402779_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2402829_2403600_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2403649_2404702_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2404698_2405325_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2405321_2406356_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2406534_2407551_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2407649_2408600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2411340_2412630_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2412748_2413186_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2413229_2414438_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2414584_2415049_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_054604408.1|2415072_2416023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2417007_2417781_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2417777_2418776_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2418860_2419637_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2419792_2421397_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2421777_2422902_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2423028_2423652_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2423648_2425550_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2425598_2426393_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2426405_2427407_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2427403_2427910_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2427902_2428751_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2428848_2429391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2429434_2430385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2430540_2430867_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2430863_2431148_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2431144_2431624_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2431620_2433249_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2433245_2433590_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2433589_2436523_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2437681_2438632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2438730_2439027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2439133_2440051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2440055_2440769_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2440782_2441754_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2443473_2443854_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2443857_2445045_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2445468_2446206_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2446499_2447450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2468241	2539342	4104260	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2468241_2469192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2469744_2471370_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2471419_2472454_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2472456_2473803_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2473799_2475314_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2475304_2476315_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2476788_2477730_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2477738_2478707_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2480246_2481215_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2481392_2482382_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2482428_2483187_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2483376_2484114_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2484212_2485163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2485347_2486130_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2486123_2486825_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2487064_2487667_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2488993_2489944_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2489940_2491497_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2491489_2492263_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2492321_2493272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2493353_2494529_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2496543_2497569_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2497580_2498870_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2498892_2499990_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2499986_2500877_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2500873_2502958_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2502989_2504159_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2504200_2504941_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2504940_2505711_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2506035_2506203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2506566_2507352_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2507378_2509463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2509630_2511586_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2511909_2512410_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2512508_2514035_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2514172_2515060_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2515074_2516028_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2516079_2518170_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2518185_2518572_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2521265_2522069_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2523362_2524265_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2524329_2525106_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2525427_2526477_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2526600_2528271_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2528275_2529070_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2529168_2530119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2530138_2531044_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2531121_2531820_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2531979_2532924_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2532933_2534421_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2534420_2535488_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2535551_2536964_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2537149_2538370_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2538391_2539342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2623542	2674714	4104260	transposase,tRNA	Salmonella_phage(20.0%)	48	NA	NA
WP_005012067.1|2623542_2624493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2624591_2625362_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2625358_2626030_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2626026_2626668_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2626680_2627601_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2627761_2628922_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2628963_2629914_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_169507376.1|2630578_2630779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2630901_2632596_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2632717_2632987_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2633102_2633501_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2633511_2634468_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2634604_2635150_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2635170_2637120_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2637507_2638284_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2638289_2638682_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2639103_2640054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2640050_2641148_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2641179_2642130_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2643911_2645153_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2645164_2645938_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2645964_2646915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2647013_2647796_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2647884_2649111_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814013.1|2649836_2651222_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2651240_2651846_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2651842_2653699_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2653695_2654496_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2654510_2655704_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2655771_2656746_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2656868_2658092_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2658202_2660407_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2660701_2661361_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2661368_2661575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2661913_2662669_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2662684_2662846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2662939_2663455_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2663727_2664045_+	virulence factor	NA	NA	NA	NA	NA
WP_170954289.1|2663989_2664634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2664759_2666115_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2666161_2667502_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2667603_2668236_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2668235_2670596_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2670637_2671597_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2671583_2672270_+	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_005015014.1|2672266_2672599_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929591.1|2672714_2673665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2673763_2674714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2773009	2813678	4104260	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2773009_2773960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2774070_2774253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2774352_2774949_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2775132_2776224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2776723_2777134_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2777192_2777534_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2777539_2779957_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2779969_2780992_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2781066_2781426_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2781441_2781639_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2781974_2782925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2783119_2783569_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2783565_2784516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2784626_2786075_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2786189_2786471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2786574_2787525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2787769_2788483_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2788605_2788833_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2789127_2789766_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2789874_2790909_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2790905_2791856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2792271_2792796_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2792799_2793069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2793267_2794329_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2794412_2796047_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2796048_2796852_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2796880_2797840_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2797843_2799358_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2799394_2800399_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2800830_2801301_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2801336_2801948_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2801978_2802602_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2802682_2804215_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2804249_2805491_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2805534_2806566_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2806562_2807732_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2807725_2808406_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2808567_2809410_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2809572_2810544_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2810715_2811594_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2811616_2812687_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2812727_2813678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2817789	2899924	4104260	transposase,tRNA	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2817789_2818740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2819489_2819924_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2819916_2821152_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2821159_2821954_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2821950_2822754_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2822780_2823758_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2823786_2825358_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2825368_2826190_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2827914_2829345_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2829357_2830047_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2830142_2831483_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2831484_2831742_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2832095_2833688_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2833784_2835245_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2835467_2836079_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2839825_2840776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2841191_2843828_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2843824_2844949_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2844945_2846328_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2846463_2846931_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2847849_2848995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2848996_2850727_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2850844_2851153_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2851165_2851978_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2852858_2853947_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2855149_2855938_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2855977_2857582_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2857662_2858403_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2858410_2858905_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2859277_2860297_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2860293_2861676_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2861708_2862569_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2863572_2864454_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2864512_2864950_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2865040_2866012_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2866050_2866995_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2867090_2867900_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2867976_2868351_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2868457_2869150_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2869142_2869559_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2869669_2870302_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2870330_2870774_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2870795_2871887_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2871941_2872742_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2872877_2873498_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2873637_2874111_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2875250_2876201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2876197_2883859_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2884099_2888146_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2888458_2889040_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2889036_2890335_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2890414_2891443_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2891703_2892654_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2892650_2893601_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2893917_2894523_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2894576_2895890_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2895964_2896435_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2896434_2897223_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2897233_2898886_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2898973_2899924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2923849	2971558	4104260	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2923849_2924800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2924934_2926041_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2926051_2927149_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2927293_2928499_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2928505_2929027_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2929023_2929515_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2929511_2929763_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2929743_2930229_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2930364_2933826_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2933843_2934728_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2934737_2935169_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2935415_2935919_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2935996_2937397_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2937471_2938347_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2938343_2939351_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2939818_2940124_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2940214_2940805_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2940995_2942012_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_077069106.1|2942203_2944540_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2944622_2945057_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2945155_2946106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2946204_2947155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2947151_2947946_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2947977_2948682_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2948756_2949557_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2949553_2949961_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2949957_2950599_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2950591_2952592_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2953852_2955184_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2955180_2956131_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2957837_2958104_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2958811_2959150_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2963703_2964306_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2964402_2965692_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2965749_2966481_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2966477_2967281_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2967277_2968366_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2968362_2969292_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2969440_2970586_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2970607_2971558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	2979555	3043303	4104260	protease,transposase	uncultured_Mediterranean_phage(22.22%)	55	NA	NA
WP_010931114.1|2979555_2981871_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2981926_2984095_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2984091_2989281_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2989370_2989685_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2989912_2990158_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2990252_2990771_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2990870_2992076_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2992191_2993589_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2993705_2994284_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2994356_2995748_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2995915_2996866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2997146_2997767_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2997763_2998177_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2998173_2999217_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2999272_2999461_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2999470_3000235_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|3000325_3000982_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|3001073_3001832_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|3001857_3003459_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|3003659_3004664_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|3004764_3005028_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|3005145_3005922_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|3006512_3007463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|3009846_3010959_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|3011015_3011966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|3012174_3012396_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|3012609_3014016_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|3014012_3015317_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|3015313_3016501_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|3016717_3017170_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|3017172_3017637_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|3017716_3019396_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|3019500_3020478_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|3020557_3021526_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|3021546_3022920_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|3022916_3023753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|3023869_3024325_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|3024340_3024613_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|3024705_3025029_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|3025076_3025457_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|3025676_3026474_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|3026630_3028493_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|3028542_3029454_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|3029458_3029725_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|3029811_3030681_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|3030816_3031782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|3031952_3032963_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|3033110_3034262_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|3035404_3036877_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|3036887_3037298_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|3037361_3038408_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|3038514_3039393_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|3039406_3040603_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|3040679_3042356_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|3042352_3043303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	3052062	3097632	4104260	transposase	Bacillus_virus(20.0%)	45	NA	NA
WP_010930176.1|3052062_3053013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|3053087_3054242_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3054298_3055249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|3055347_3055653_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|3055681_3056116_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|3056117_3057362_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|3057358_3058069_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|3058083_3058995_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|3059182_3059347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3059364_3060315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|3060406_3060811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|3060807_3061266_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|3061272_3062181_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|3062177_3063044_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|3063030_3063858_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|3063868_3064996_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_077069107.1|3066073_3067312_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|3067353_3068616_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|3068622_3069375_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|3069426_3069612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|3069887_3070352_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|3070383_3071043_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|3071187_3073296_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|3073292_3074243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|3074346_3074967_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|3075058_3075811_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|3076945_3078070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|3078115_3078484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3078725_3079676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|3080711_3081254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|3081451_3081622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3081639_3082590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|3082586_3083552_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3083621_3084458_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3084970_3086080_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3086141_3087092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3087284_3088067_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3088080_3088830_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3088857_3090204_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3090229_3091159_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3091274_3092180_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3092197_3093397_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3093469_3094162_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3094210_3096637_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3096681_3097632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	3467038	3520779	4104260	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3467038_3467989_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3468393_3469038_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3469062_3469647_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3469747_3470365_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3470367_3472083_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3472079_3472388_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3472404_3473022_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3473066_3473369_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3473469_3474324_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3474511_3474736_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3474905_3475178_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3475595_3476003_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3476372_3477167_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3477267_3478503_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3478571_3479588_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3479599_3480976_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3480972_3482169_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3482165_3483704_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3483700_3484960_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3486900_3487851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3488617_3489712_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3489704_3491039_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3490992_3491676_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3491701_3492865_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3492861_3493863_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3493862_3494735_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3494731_3495481_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3495477_3496269_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3496265_3497405_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3497680_3498466_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3498499_3499282_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3499285_3499675_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3500814_3501678_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3501713_3502802_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3502798_3503749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3504102_3507081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3508007_3508886_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3510834_3511785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3511781_3512249_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3512291_3513062_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3513082_3513883_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3513893_3515303_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3515397_3516183_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3516422_3517439_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3517546_3517939_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3518076_3518757_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3518761_3519733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3519828_3520779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	3526934	3586234	4104260	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3526934_3528698_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3528809_3529688_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3529800_3530616_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3530619_3530871_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3530955_3531972_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3532302_3532524_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3534884_3535802_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3536299_3537508_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3537587_3539159_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3539276_3540212_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3540400_3541345_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3541912_3547630_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3547635_3548763_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3548818_3549445_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3549716_3550733_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3550828_3551539_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3551535_3552525_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3552620_3554252_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3554254_3554992_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3555147_3556020_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3556288_3557509_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3557505_3558165_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3558236_3558869_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3558898_3559417_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3559427_3560537_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3560583_3561438_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3561439_3562342_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3563564_3564515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3566271_3567261_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3567257_3567416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3567436_3568225_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3568221_3569253_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3569271_3569835_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3569890_3571411_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3571674_3572379_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3572386_3573124_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3573229_3573604_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3573646_3574936_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3574932_3576102_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3576098_3576938_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3576997_3577933_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3577945_3578896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3578994_3579957_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3579988_3580348_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3580472_3581375_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3581376_3583149_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3583183_3583960_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_077069109.1|3585283_3586234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	3601172	3661478	4104260	protease,transposase,tRNA	Planktothrix_phage(11.11%)	49	NA	NA
WP_005012808.1|3601172_3602123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3602251_3603385_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3603428_3604334_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3604336_3606037_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3606033_3606954_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3606961_3607939_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3607997_3609032_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3611006_3611243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3611369_3612233_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3612321_3613143_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3613222_3613960_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3613956_3614949_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3615062_3615725_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3615769_3616918_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3619241_3620192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3620532_3621483_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3621581_3622532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3622828_3623326_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3623368_3625144_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3625151_3626018_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3626024_3626759_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3627928_3628723_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3629012_3629603_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3629636_3630965_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3631039_3632185_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3632296_3633295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3633257_3633692_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3635208_3636093_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3636089_3637295_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3637291_3638152_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3638264_3640055_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3640095_3640761_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3640761_3641070_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3641235_3642522_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3643955_3644906_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3646857_3648072_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3648177_3649167_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3649163_3649772_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3649784_3650414_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3650410_3651031_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3651062_3651854_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3652705_3653161_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3653179_3654106_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3654159_3655446_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3656376_3657249_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3657245_3658196_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3658294_3659245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929912.1|3659241_3660036_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA	NA
WP_010929911.1|3660032_3661478_-|protease	protease CptA	protease	A0A0R6PIZ1	Moraxella_phage	26.1	6.0e-20
>prophage 31
NZ_CP011699	Bordetella pertussis strain H766 chromosome, complete genome	4104260	4026431	4079863	4104260	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4026431_4027382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4027551_4028778_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4028977_4029844_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4029836_4030799_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4030899_4031850_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4031948_4032899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4032997_4033948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4033944_4035438_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4035434_4038542_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4038538_4041607_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4041603_4042854_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4043034_4043796_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4043828_4044479_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4044481_4045321_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4045561_4046305_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4046387_4046735_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4046832_4047675_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4047719_4048607_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4048633_4048822_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4048919_4050377_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4050363_4051890_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4051908_4052376_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4052375_4053398_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4053518_4054238_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4054313_4055414_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4055415_4056606_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4056725_4057742_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4058060_4058732_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4058728_4059637_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4059848_4060496_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4064347_4065424_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4065434_4066244_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4066333_4067107_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4067289_4068240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4068128_4069151_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4069140_4070295_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4070334_4071747_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4071871_4072738_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4072739_4073564_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4073560_4074322_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4074402_4075089_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4075262_4076270_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4076266_4077046_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4077103_4078366_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4078912_4079863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
