The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	27282	70036	4105337	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	77634	136108	4105337	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	164893	225404	4105337	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	233336	286924	4105337	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	390857	448366	4105337	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	589371	650563	4105337	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590797_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592706_593198_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593216_594290_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594336_595440_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595515_596136_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596156_596666_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596720_596972_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597035_598169_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598176_598563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598559_601079_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601507_601846_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601842_602349_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602410_603211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603321_604263_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604356_605892_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607571_609422_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609425_610259_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610258_611200_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611451_612423_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612564_614853_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615159_616068_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616122_617088_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617162_618824_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618895_619606_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619754_620705_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621403_621787_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621844_622447_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622464_622866_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622981_623893_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623889_624471_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625265_626000_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626040_627090_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627237_627816_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628202_629180_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629273_633668_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633868_634717_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634875_635688_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635743_636694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636792_637593_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637654_638038_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638049_639402_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639689_640019_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640021_640771_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640953_641874_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641920_642133_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642155_642578_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642594_643695_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643791_645309_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645384_646224_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646245_647118_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647208_648303_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648596_649547_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649621_650563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	655887	702078	4105337	tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655887_656913_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656953_657193_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657262_658852_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658851_659400_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659480_660053_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660071_660983_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661056_662025_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662147_663221_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663225_665046_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665122_666073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666161_666497_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666630_667281_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667302_668721_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668790_669546_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669514_670273_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670283_671165_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671181_671889_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671891_672650_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672859_674602_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674594_675119_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675158_675953_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676120_677194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677292_678243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678494_678701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678772_679384_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679938_680190_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680182_680872_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681128_682079_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682718_683204_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683190_684468_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684470_685889_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685917_686973_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686978_687221_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687343_687946_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688374_689325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689999_690251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690313_690796_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690809_690998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690997_691393_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691389_691788_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691784_692207_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692214_692715_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692969_693488_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693497_693827_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693844_694135_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694160_696773_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696782_697142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697209_697743_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697739_698129_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698121_702078_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	708244	762174	4105337	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708244_709975_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710027_710456_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710458_711139_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711138_711597_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711633_712608_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712624_713941_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713972_714470_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714556_715246_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715245_716295_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716291_717086_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717254_717605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717580_718138_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719267_720218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722355_723585_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723587_725030_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725134_726280_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726311_727109_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727133_728693_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728689_731062_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731171_732275_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732274_732967_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733110_733812_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733796_734174_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734905_735856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736015_736888_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737228_737447_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737486_738866_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738907_740305_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740344_741997_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742000_742885_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742884_743826_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743904_745524_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745690_746506_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746573_747143_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747143_748094_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748748_749846_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749879_751145_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751302_752253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752496_753087_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753102_755547_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755666_756638_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756769_757294_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757253_758204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758425_760621_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760693_761101_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761223_762174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	884763	952739	4105337	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884763_885780_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885976_886960_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888558_889947_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889977_890967_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891077_892310_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892591_893392_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893414_895646_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896433_896880_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896901_897648_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897791_898769_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899402_900014_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900007_901225_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901365_902316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902312_903032_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903152_905312_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905402_905672_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905760_905967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905965_906493_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906511_907291_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907458_908475_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908547_909039_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909049_910765_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911928_912879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912875_914708_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915106_915766_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916293_916974_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917255_917972_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917986_919288_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921432_924321_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924544_925897_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925925_926447_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926443_927898_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927932_928181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928286_929162_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929187_930243_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930255_931047_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931079_932450_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933626_934577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934629_934851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935010_935223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935342_936461_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936557_936773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936966_937218_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937330_938281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938277_938661_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938715_940530_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940679_941507_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941552_942533_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942529_942742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942738_943920_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944083_944818_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944819_947432_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947567_949481_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950096_950507_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950604_951690_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951788_952739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	996268	1068785	4105337	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996268_997219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997323_998373_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998510_999527_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001035_1001608_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001667_1002399_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002450_1003368_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004175_1007355_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007351_1008734_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008803_1009055_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009200_1009815_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1010001_1012062_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012191_1013043_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013039_1013666_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013662_1015417_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015709_1018415_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018427_1020089_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020101_1021892_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022113_1023289_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023331_1024282_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024380_1025121_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025315_1027352_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027369_1028380_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028497_1029691_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029720_1030494_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030490_1031681_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031706_1032645_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032641_1034990_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035144_1035786_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037115_1037268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037299_1037848_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037866_1038352_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038529_1039468_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039470_1039788_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039833_1040778_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042458_1043109_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043162_1043498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043494_1044355_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044371_1044653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044726_1044990_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045233_1046184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046482_1047220_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047655_1047979_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048013_1048574_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048694_1049570_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049582_1050530_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050631_1050925_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050951_1053009_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053023_1053524_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053597_1055304_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056167_1057220_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057272_1057662_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057670_1058303_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058402_1059419_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060249_1061257_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061253_1062897_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062893_1063781_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063921_1064395_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064384_1065407_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065403_1066831_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067768_1068785_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1072538	1134614	4105337	tRNA,transposase,holin	Catovirus(20.0%)	52	NA	NA
WP_010930155.1|1072538_1073675_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073671_1074745_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074902_1076339_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076429_1077071_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077406_1078423_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080465_1081416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082618_1084040_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084303_1085020_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085104_1085422_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085462_1085876_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085877_1086237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086279_1087824_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087907_1088738_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088772_1089927_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089969_1090842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090958_1093247_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094453_1094918_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094944_1095895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095912_1096050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096262_1097039_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097083_1097941_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097962_1098979_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099113_1100154_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100348_1102430_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102665_1104159_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104389_1105184_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105404_1106763_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106759_1107602_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107620_1109507_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109448_1109700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109744_1110377_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110395_1110998_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111149_1112100_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112680_1113388_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113746_1114733_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114872_1115886_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115882_1116833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1116945_1117404_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117440_1118754_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118771_1119143_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119139_1120603_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120743_1121472_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121453_1124303_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124515_1125466_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125633_1126458_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126457_1127336_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128240_1129356_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129384_1130179_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130175_1132041_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132119_1132752_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132748_1133051_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133093_1134614_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1152184	1218704	4105337	tRNA,transposase	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1152184_1153981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153980_1154949_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155018_1155864_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155931_1156486_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156532_1157483_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157581_1158214_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158379_1160662_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160816_1163513_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163638_1164127_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166537_1169408_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169453_1170668_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170897_1172325_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172422_1173514_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173526_1174285_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174372_1175275_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175271_1176222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176351_1177335_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177389_1178112_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179590_1180946_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181026_1183402_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183566_1185642_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185703_1186498_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186605_1187568_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187555_1188311_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188418_1190056_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190123_1190861_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190963_1191539_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191711_1192248_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192280_1192595_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192610_1193456_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193494_1194874_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194951_1195833_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195931_1196882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196878_1197289_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197396_1198251_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198243_1199206_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199251_1200376_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200481_1201360_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201484_1202264_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202417_1203839_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204273_1205971_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206197_1207139_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207465_1208212_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208219_1209146_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209267_1210185_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210224_1211178_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211202_1211781_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213454_1214063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214140_1214494_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214577_1215567_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1215769_1216720_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216806_1217757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217753_1218704_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1269632	1326843	4105337	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1269632_1270583_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274329_1274941_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275163_1276624_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276720_1278313_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278666_1278924_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278925_1280266_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280361_1281051_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281063_1282494_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284218_1285040_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285050_1286622_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286650_1287628_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287654_1288458_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288454_1289249_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289256_1290492_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290505_1290919_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291668_1292619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293240_1294968_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295079_1296438_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296730_1297681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297721_1298792_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298814_1299693_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299864_1300836_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300998_1301841_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1302002_1302683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302676_1303846_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303842_1304874_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304941_1306159_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306193_1307726_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307806_1308430_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308460_1309072_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309107_1309578_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310009_1311014_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311050_1312565_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312568_1313528_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313556_1314360_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314361_1315996_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316079_1317141_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317339_1317609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317612_1318137_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318552_1319503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319499_1320534_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320642_1321281_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321575_1321803_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321925_1322639_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322883_1323834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323973_1324219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324333_1325782_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325892_1326843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1417076	1469228	4105337	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1417076_1418027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418193_1418547_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418559_1418922_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418963_1419389_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419591_1420848_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421046_1422027_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422176_1423418_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423516_1424467_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424475_1425171_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427991_1428591_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428601_1430767_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430790_1432575_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432574_1432664_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433358_1433631_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433630_1435697_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435693_1436644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436742_1437693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437808_1438141_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438137_1438824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1438810_1439770_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1439802_1442172_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442171_1442804_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442905_1444246_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444292_1445648_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1445938_1446175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446362_1446680_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446952_1447468_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1447738_1448494_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448832_1449039_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449046_1449706_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1450000_1452205_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452315_1453539_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453661_1454636_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454703_1455897_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455911_1456712_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456708_1458565_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458561_1459167_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459185_1460571_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461296_1462523_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1462611_1463394_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463492_1464443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464469_1465243_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465254_1466496_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468277_1469228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1513153	1573065	4105337	tRNA,transposase	Streptococcus_virus(12.5%)	50	NA	NA
WP_010930416.1|1513153_1513642_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513759_1514338_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514443_1514812_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514910_1515861_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515867_1516980_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517666_1518869_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1519072_1521733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1521745_1525150_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525817_1528043_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528089_1528416_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528466_1529075_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529173_1530124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852714.1|1530222_1531173_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531242_1532007_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532003_1532540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532706_1533558_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533617_1534244_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534240_1535191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535289_1536402_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536391_1537393_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537498_1539010_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539006_1540311_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540422_1540983_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541250_1541805_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542260_1542476_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542730_1545328_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545324_1546512_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547170_1547785_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547873_1548995_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549012_1549918_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550810_1551761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551942_1552695_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552763_1553423_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553419_1554148_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554160_1556440_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556464_1556668_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556709_1557342_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557477_1558395_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558391_1559105_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559342_1560113_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560117_1560717_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560961_1562452_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562510_1562795_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563360_1564287_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564423_1565164_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565330_1566707_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566888_1567794_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569445_1571248_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571365_1572016_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572114_1573065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1618237	1673828	4105337	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618237_1619188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619246_1620020_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620012_1621569_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621565_1622516_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623842_1624445_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624684_1625386_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625379_1626162_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626346_1627297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627395_1628133_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628322_1629081_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629127_1630117_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630294_1631263_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632802_1633771_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633779_1634721_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635194_1636205_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636195_1637710_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637706_1639053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639055_1640090_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640139_1641765_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642317_1643268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643372_1644320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644373_1646188_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646180_1646855_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646984_1650059_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650072_1650372_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650686_1651310_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651553_1652423_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652400_1653345_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653430_1654357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654469_1655249_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655239_1656436_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656466_1657417_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657638_1658328_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658392_1659148_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659199_1660192_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660201_1661155_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661270_1662233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663634_1664063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664059_1665010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665303_1666026_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666464_1667652_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667655_1668006_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669755_1670727_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670740_1671454_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671458_1672376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672482_1672779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672877_1673828_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1831595	1890865	4105337	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831595_1832546_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832670_1833480_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833680_1834631_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835904_1837122_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838178_1839081_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839157_1840030_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840160_1840529_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840586_1841633_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841828_1843085_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843089_1844427_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844576_1845533_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845635_1846568_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846683_1847004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846996_1847356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847403_1848978_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849030_1849975_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849992_1850823_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850815_1852450_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852446_1853802_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854708_1856286_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856289_1857564_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857661_1858036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859751_1860885_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860922_1861528_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861524_1862343_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862414_1865039_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865025_1865280_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865346_1865928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866231_1866492_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866657_1867281_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867280_1868054_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868050_1869259_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869284_1869758_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869831_1870782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870880_1871831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871929_1873279_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874044_1874800_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874892_1877775_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878097_1878523_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878550_1879699_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879695_1880202_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880217_1881504_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881553_1882849_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882850_1883489_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883494_1884652_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884678_1886034_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886037_1887108_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887246_1887483_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887570_1888677_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888642_1889947_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889965_1890865_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1901105	1944379	4105337	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901105_1902056_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902154_1903105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903304_1904390_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904405_1905167_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905163_1906087_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906185_1906710_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906718_1907462_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907557_1907797_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907810_1907963_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908048_1909539_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909630_1910569_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910565_1910742_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910744_1911407_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913028_1913172_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913168_1914143_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914309_1915260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915256_1916531_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916634_1917828_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917824_1918478_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918474_1919911_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919898_1920258_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921072_1921213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921230_1922181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922177_1924043_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924300_1925821_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925908_1926559_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1927507_1928803_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928824_1929709_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929807_1930683_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930672_1931029_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931159_1932134_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932263_1932443_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932540_1933065_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933075_1933912_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934024_1934396_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934392_1934944_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934959_1936651_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936699_1937380_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937627_1938092_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938261_1939191_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939203_1939851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939924_1941742_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941825_1942776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943428_1944379_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	1974152	2038521	4105337	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974152_1975103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975324_1976275_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976373_1977339_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977476_1978376_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980970_1982458_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982468_1983665_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983737_1985057_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985053_1985929_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985959_1987108_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987125_1987440_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987461_1988184_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988183_1989002_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989006_1989534_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989539_1990796_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991154_1992294_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992371_1993244_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994114_1995065_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995024_1995660_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996019_1997342_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997660_1998482_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999906_2000479_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000518_2002348_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002310_2003369_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003406_2003868_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003952_2004699_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006189_2009420_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009486_2010818_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011070_2011445_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011547_2012726_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012736_2013327_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013437_2014244_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014269_2015064_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016064_2017039_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017197_2017710_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017866_2018838_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020582_2021389_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2021385_2022687_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2022637_2023402_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023515_2024286_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024370_2025558_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025630_2026005_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2026105_2027368_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027364_2028222_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028394_2029396_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029847_2030798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2032361_2033513_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033881_2034118_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034181_2034349_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2034462_2036358_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2036521_2037472_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037570_2038521_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	2170050	2219703	4105337	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170050_2171001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171099_2173094_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173153_2174119_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174108_2176970_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176972_2177479_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177583_2178792_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178793_2179732_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179893_2180367_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180363_2181314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181424_2181865_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181993_2183223_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183261_2184083_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184136_2185288_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185379_2185868_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188418_2190968_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191038_2193612_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193877_2194078_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194109_2194271_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194328_2194667_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194815_2195766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196540_2197209_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2197190_2199146_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2199388_2200138_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200150_2201014_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201017_2202433_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202566_2203295_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203433_2203634_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203809_2204208_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204231_2205632_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205750_2206503_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2206791_2207469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207495_2208275_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208271_2209156_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209173_2209953_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209937_2210696_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2210833_2211469_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211736_2212753_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212850_2213891_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214025_2215318_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216677_2217061_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217078_2217666_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217703_2218654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218752_2219703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	2575482	2641982	4105337	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575482_2576433_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576802_2577375_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577377_2578388_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578380_2578881_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578891_2579233_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2579301_2580036_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580052_2580322_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580344_2581133_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581179_2582196_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582412_2583855_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584033_2585653_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585773_2587594_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587672_2589205_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2589238_2590885_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590954_2591977_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591994_2593128_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593130_2593820_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593819_2594605_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594648_2595413_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595451_2596873_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596938_2597643_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597690_2598110_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598122_2598530_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598713_2599424_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599550_2599841_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599858_2600341_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604846_2606001_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606306_2607323_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607569_2608358_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608424_2609105_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609101_2609872_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609970_2610921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610976_2611894_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611904_2613083_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613102_2614098_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615686_2616295_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616282_2617323_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617340_2618303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618299_2619493_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619489_2620287_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620312_2621299_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621317_2623357_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2623558_2624239_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624252_2625164_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625160_2625739_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625877_2626783_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626790_2630210_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630197_2632798_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633753_2634386_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634779_2635538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2635534_2636737_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636924_2637875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638782_2639928_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639914_2640670_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640786_2640966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641031_2641982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	2670097	2707509	4105337	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670097_2671048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671146_2672097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672189_2672729_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672835_2673180_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673237_2674686_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674873_2675209_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676836_2678015_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678097_2678598_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678707_2679409_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2679420_2679885_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679899_2680175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680171_2680948_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680976_2681804_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681929_2682400_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682526_2683420_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683467_2684649_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684661_2685477_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2685610_2686138_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686134_2686632_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686779_2687157_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687378_2688329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688427_2689039_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689273_2690401_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690511_2691600_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691652_2692504_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692523_2693405_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693581_2694895_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695105_2695939_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695935_2696517_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696870_2697821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697836_2698952_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699054_2699981_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699980_2701219_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701215_2701983_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701983_2702685_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702766_2703213_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2704102_2704741_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705509_2706460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706558_2707509_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	2806636	2861153	4105337	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2806636_2807587_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807915_2808521_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2808574_2809888_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809962_2810433_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810432_2811221_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811231_2812884_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812971_2813922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815083_2815590_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815586_2816351_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816366_2816651_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816715_2817705_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817876_2818806_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818777_2819464_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819497_2820043_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820087_2821353_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821349_2822252_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823433_2824378_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824472_2825990_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826031_2827660_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827767_2828649_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831761_2832136_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832160_2832499_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832542_2834177_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834215_2835562_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2835669_2837091_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837160_2837745_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837847_2838798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838932_2840039_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840049_2841147_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841291_2842497_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842503_2843025_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2843021_2843504_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843509_2843761_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843741_2844227_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844362_2847824_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847841_2848726_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848735_2849167_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849413_2849917_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849994_2851395_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851469_2852345_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852341_2853349_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853816_2854122_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854212_2854803_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854993_2856010_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856201_2858538_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858620_2859055_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859153_2860104_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860202_2861153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	2869178	2925965	4105337	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2869178_2870129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871835_2872102_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872809_2873148_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877702_2878305_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878401_2879691_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879748_2880480_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880476_2881280_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881276_2882365_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882361_2883291_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883439_2884585_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884606_2885557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2885887_2889709_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889865_2890534_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890538_2892212_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892230_2893550_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893554_2895870_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895925_2898094_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2898090_2903271_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903369_2903684_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903911_2904157_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904251_2904770_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904869_2906075_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906190_2907588_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907704_2908283_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908355_2909747_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909914_2910865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911145_2911766_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911762_2912176_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912172_2913216_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913271_2913460_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913469_2914234_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914324_2914981_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915072_2915831_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915856_2917458_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917658_2918663_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918763_2919027_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919144_2919921_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920511_2921462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923845_2924958_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925014_2925965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	2956351	3000042	4105337	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2956351_2957302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2957422_2958319_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960596_2962822_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962986_2964075_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964031_2964685_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964732_2965530_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966061_2967012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2967092_2968241_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968297_2969248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969346_2969652_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969680_2970115_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970116_2971361_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971357_2972068_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972082_2972994_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973356_2973761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973757_2974216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2974222_2975131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2975127_2975994_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975980_2976808_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976818_2977946_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979023_2980262_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980303_2981566_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981572_2982325_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982376_2982562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982837_2983302_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983333_2983993_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984137_2986246_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986242_2987193_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987296_2987917_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2988020_2988761_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989895_2991020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991065_2991434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991675_2992626_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993661_2994204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994401_2994572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994589_2995540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2995536_2996445_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996571_2997408_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997920_2999030_+	porin	NA	NA	NA	NA	NA
WP_010929591.1|2999091_3000042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	3379988	3433729	4105337	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3379988_3380939_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3381343_3381988_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3382012_3382597_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3382697_3383315_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3383317_3385033_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3385029_3385338_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3385354_3385972_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3386016_3386319_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3386419_3387274_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3387461_3387686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3387855_3388128_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3388545_3388953_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3389322_3390117_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3390217_3391453_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3391521_3392538_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3392549_3393926_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3393922_3395119_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3395115_3396654_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3396650_3397910_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3399850_3400801_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3401567_3402662_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3402654_3403989_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3403942_3404626_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3404651_3405815_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3405811_3406813_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3406812_3407685_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3407681_3408431_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3408427_3409219_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3409215_3410355_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3410630_3411416_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3411449_3412232_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3412235_3412625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3413764_3414628_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3414663_3415752_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3415748_3416699_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3417052_3420031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3420957_3421836_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3423784_3424735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3424731_3425199_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3425241_3426012_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3426032_3426833_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3426843_3428253_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3428347_3429133_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3429372_3430389_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3430496_3430889_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3431026_3431707_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3431711_3432683_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3432778_3433729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	3439884	3499182	4105337	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3439884_3441648_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3441759_3442638_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3442750_3443566_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3443569_3443821_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3443905_3444922_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3445252_3445474_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3447834_3448752_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3449249_3450458_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3450537_3452109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3452226_3453162_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3453350_3454295_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3454862_3460580_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3460585_3461713_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3461768_3462395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3462666_3463683_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3463778_3464489_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3464485_3465475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3465570_3467202_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3467204_3467942_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3468097_3468970_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3469319_3470459_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3470455_3471115_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3471186_3471819_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3471848_3472367_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3472377_3473487_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3473533_3474388_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3474389_3475292_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3476514_3477465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3479219_3480209_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3480384_3481173_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3481169_3482201_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3482219_3482783_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3482838_3484359_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3484622_3485327_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3485334_3486063_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3486177_3486552_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3486594_3487884_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3487880_3489050_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3489046_3489886_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3489945_3490881_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3490893_3491844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3491942_3492905_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3492936_3493296_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3493420_3494323_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3494324_3496097_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3496131_3496908_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3498231_3499182_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	3514120	3572193	4105337	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3514120_3515071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3515199_3516333_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3516376_3517282_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3517284_3518985_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3518981_3519902_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3519909_3520887_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3520945_3521980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3523954_3524191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3524317_3525181_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3525269_3526091_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3526170_3526908_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3526904_3527897_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3528049_3528673_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3528717_3529866_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3532189_3533140_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3533480_3534431_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3534529_3535480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3535776_3536274_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3536316_3538092_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3538099_3538966_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3538972_3539707_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3540876_3541671_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3541960_3542551_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3542584_3543913_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3543987_3545133_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3545244_3546243_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3546205_3546640_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3548156_3549041_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3549037_3550243_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3550239_3551100_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3551212_3553003_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3553043_3553688_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3553709_3554018_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3554183_3555470_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3556903_3557854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3559805_3561020_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3561125_3562115_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3562111_3562720_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3562732_3563362_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3563358_3563979_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3564010_3564802_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3565653_3566109_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3566127_3567054_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3567107_3568394_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3569324_3570197_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3570193_3571144_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3571242_3572193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011696	Bordetella pertussis strain H762 chromosome, complete genome	4105337	4004405	4069317	4105337	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4004405_4004891_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004979_4005117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005109_4006090_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006356_4007166_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007205_4007886_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007879_4008338_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008349_4008712_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008794_4009478_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009533_4009842_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009860_4010175_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010171_4012646_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012653_4014045_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014041_4014227_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014205_4014907_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014903_4015725_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015705_4016830_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016822_4017842_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018047_4018938_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019182_4019974_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020056_4020431_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020408_4021818_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021810_4023193_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023527_4025132_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025209_4026181_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026191_4027118_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027508_4028459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028628_4029855_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030054_4030921_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030913_4031876_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031976_4032927_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033025_4033976_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034074_4035025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035021_4036515_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036511_4039619_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039615_4042684_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042680_4043931_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044111_4044864_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044905_4045550_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045558_4046539_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046638_4047382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047464_4047812_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047909_4048752_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048796_4049684_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049710_4049899_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049996_4051454_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051440_4052967_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052985_4053453_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053452_4054475_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054595_4055336_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055390_4056491_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056492_4057683_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057802_4058819_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059137_4059809_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059805_4060714_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060925_4061573_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065433_4066501_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066511_4067321_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4067410_4068184_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068366_4069317_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
