The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	27282	70036	4105342	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|57497_58448_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	77634	136108	4105342	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	164894	225405	4105342	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005013747.1|205636_206587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	233337	286925	4105342	tRNA,transposase,protease	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	555310	614610	4105342	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|555310_556261_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557584_558361_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558395_560168_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560169_561072_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561196_561556_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561587_562550_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562648_563599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563611_564547_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564606_565446_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565442_566612_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566608_567898_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567940_568315_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|568429_569158_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569165_569870_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570133_571654_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571709_572273_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572291_573323_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573319_574108_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|574283_575273_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|577029_577980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579202_580105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580106_580961_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581007_582117_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582127_582646_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582675_583308_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583379_584039_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|584035_585175_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585524_586397_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|586552_587290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|587292_588924_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|589019_590009_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|590005_590716_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853536.1|590811_591828_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592099_592726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|592781_593909_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593914_599632_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600199_601144_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601332_602268_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602385_603957_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604036_605245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605742_606660_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609020_609242_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609572_610589_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610673_610925_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610928_611744_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611856_612735_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612846_614610_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	620765	674506	4105342	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|620765_621716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621811_622783_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622787_623468_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623605_623998_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624105_625122_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625361_626147_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626241_627651_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627661_628462_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628482_629253_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|629295_629763_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629759_630710_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632658_633537_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634463_637442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|637795_638746_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638742_639831_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639866_640730_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|641869_642259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|642262_643045_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643078_643864_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644139_645279_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645275_646067_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646063_646813_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646809_647682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647681_648683_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648679_649843_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|649868_650552_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650505_651840_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651832_652927_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653693_654644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|656584_657844_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|657840_659379_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|659375_660572_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|660568_661945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|661956_662973_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|663041_664277_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|664377_665172_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|665541_665949_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|666366_666639_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|666808_667033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|667220_668075_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|668175_668478_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|668522_669140_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|669156_669465_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|669461_671177_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|671179_671797_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|671897_672482_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|672506_673151_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|673555_674506_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	723444	763394	4105342	tRNA,protease,integrase,transposase	Pseudomonas_phage(33.33%)	31	720692:720710	740580:740598
720692:720710	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|723444_724041_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724037_724820_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724892_725984_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726263_727391_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727732_728779_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|729289_732046_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732047_734999_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735014_736226_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|736222_736423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|736409_737360_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737376_737871_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737874_738132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738675_739587_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739668_739953_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740736_741687_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740580:740598	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742105_744670_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744714_746568_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|746900_748472_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|749740_749896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|749913_750864_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|750949_751690_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|751916_752864_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|754251_755202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|755219_755432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|755395_756211_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|756343_757783_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|757796_758138_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|758192_759848_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|759999_761010_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|761142_761916_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|762443_763394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	773321	821988	4105342	holin,tRNA,transposase,protease	Bovine_alphaherpesvirus(10.0%)	48	NA	NA
WP_005012808.1|773321_774272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|774410_775163_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|775437_777126_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|777145_778405_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|778419_779514_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|779510_781574_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|781649_782330_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|782607_783981_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|783982_785002_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|785065_786037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|786101_787052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|787150_787993_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|787992_788328_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|788398_789817_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|790096_791137_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|791216_791468_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|791578_792742_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|793025_793880_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|793876_794767_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|794809_795721_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|795747_796440_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|796454_797435_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|797447_799589_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|799637_800606_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|800596_801265_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|801225_802161_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|802157_803054_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|803050_803773_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|803763_803928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|804101_804605_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|804881_805997_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|806139_806604_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|806751_807291_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|807312_808647_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|808660_808966_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|809390_809972_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005012808.1|810053_811004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|811102_812053_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812151_813102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813542_814448_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814503_816111_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816364_817870_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817884_818349_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818638_819589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|819606_819795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|819751_820282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820281_820593_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821037_821988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	1006204	1100241	4105342	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1006204_1007155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007257_1007920_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008014_1008185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008537_1009539_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009541_1010738_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010758_1011562_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011642_1011939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011969_1012533_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012573_1013431_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013438_1014188_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014209_1015082_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015110_1015890_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015923_1016721_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019375_1019768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019761_1020622_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020625_1021588_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022364_1023054_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023914_1024865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025214_1026084_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026154_1026850_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026839_1027349_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027345_1028566_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028513_1029416_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030302_1031589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031627_1033001_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033039_1033741_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034039_1035029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035129_1035591_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035606_1036155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036296_1037772_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037877_1038969_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038972_1039755_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039764_1040553_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041678_1042113_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042109_1043120_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043163_1044090_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044376_1044745_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1044797_1044944_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1044961_1045912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045956_1048383_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048431_1049124_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049196_1050396_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050413_1051319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051434_1052364_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052389_1053736_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053748_1054513_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054526_1055309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055501_1056452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056513_1057623_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058135_1058972_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059098_1060007_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060003_1060954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1060971_1061142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1061339_1061882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062917_1063868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064109_1064478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064523_1065648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066782_1067523_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067626_1068247_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_076879634.1|1068350_1069301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069297_1071406_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071550_1072210_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072241_1072706_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072981_1073167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073218_1073971_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073977_1075240_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075281_1076520_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077597_1078725_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078735_1079563_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079549_1080416_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081782_1082187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082278_1083229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1083246_1083411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1083598_1084510_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084524_1085235_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085231_1086476_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086477_1086912_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086940_1087246_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087344_1088295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088351_1089500_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089580_1090531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091062_1091860_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091907_1092561_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092517_1093606_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093770_1095996_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098273_1099170_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1099123_1099273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1099290_1100241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	1130627	1201597	4105342	protease,transposase	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_010929584.1|1130627_1131578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131634_1132747_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135130_1136081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136671_1137448_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137565_1137829_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137929_1138934_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139134_1140736_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140761_1141520_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141611_1142268_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142358_1143123_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143132_1143321_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143376_1144420_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144416_1144830_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144826_1145447_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145727_1146678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146845_1148237_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148309_1148888_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149004_1150402_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150517_1151723_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151822_1152341_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152435_1152681_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152908_1153223_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153321_1158502_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158498_1160667_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160722_1163038_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163042_1164362_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164380_1166054_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166058_1166727_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166883_1170705_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1170859_1171018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1171035_1171986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172007_1173153_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173301_1174231_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174227_1175316_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175312_1176116_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176112_1176844_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176901_1178191_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178287_1178890_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183442_1183781_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184488_1184755_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186461_1187412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187408_1188740_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190000_1192001_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191993_1192635_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192631_1193039_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193035_1193836_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193910_1194615_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194646_1195441_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195437_1196388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196486_1197437_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197535_1197970_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198052_1200389_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200580_1201597_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	1248991	1329866	4105342	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1248991_1249942_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249938_1250889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251149_1252178_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252257_1253556_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253552_1254134_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254446_1258493_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258733_1266395_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266391_1267342_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268481_1268955_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269094_1269715_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269850_1270651_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270705_1271797_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271818_1272262_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272290_1272923_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273033_1273450_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273442_1274135_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274241_1274616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274692_1275502_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275597_1276542_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276580_1277552_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277642_1278080_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278138_1279020_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280023_1280884_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280916_1282299_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282295_1283315_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283687_1284182_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284189_1284930_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285010_1286615_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286654_1287443_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287568_1289734_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290614_1291427_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291439_1291748_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291865_1293596_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293597_1294800_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1294872_1295541_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295662_1296130_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296265_1297648_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297644_1298769_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298765_1301402_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301817_1302768_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306514_1307126_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307348_1308809_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308905_1310498_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310851_1311109_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311110_1312451_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312546_1313236_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313248_1314679_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316403_1317225_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317235_1318807_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318835_1319813_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319839_1320643_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320639_1321434_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321441_1322677_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322690_1323104_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1323853_1324804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325425_1327153_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327264_1328623_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1328679_1328898_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1328915_1329866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	1449261	1501409	4105342	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1449261_1450212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1450229_1450382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1450378_1450732_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450744_1451107_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451148_1451574_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451776_1453033_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453231_1454212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454361_1455603_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455701_1456652_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456660_1457356_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460177_1460777_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460787_1462953_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462976_1464761_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464760_1464850_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465544_1465817_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465816_1467883_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467879_1468830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468928_1469879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077077576.1|1469994_1470327_-	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470323_1471010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470996_1471956_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1471988_1474358_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474357_1474990_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475091_1476432_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476478_1477834_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478124_1478361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478548_1478866_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479138_1479654_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479924_1480680_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481018_1481225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481232_1481892_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482186_1484391_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484501_1485725_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485847_1486822_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486889_1488083_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488097_1488898_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488894_1490751_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490747_1491353_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491371_1492757_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493482_1494709_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494797_1495580_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495678_1496629_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496655_1497429_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497440_1498682_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500458_1501409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	1545334	1613420	4105342	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1545334_1545823_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1545940_1546519_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546624_1546993_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547091_1548042_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548048_1549161_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549847_1551050_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551253_1553914_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553926_1557331_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1557998_1560224_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560270_1560597_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560647_1561256_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561354_1562305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077077578.1|1562374_1563139_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_033446226.1|1563135_1563672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563838_1564690_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564749_1565376_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565372_1566323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566421_1567534_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567523_1568525_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568630_1570142_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570138_1571443_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571554_1572115_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572382_1572937_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573392_1573608_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573862_1576460_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576456_1577644_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1578302_1578917_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1579005_1580127_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580144_1581050_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581942_1582893_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583074_1583827_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583895_1584555_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584551_1585280_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585292_1587572_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587596_1587800_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587841_1588474_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588609_1589527_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589523_1590237_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590474_1591245_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591249_1591849_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592093_1593584_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593642_1593927_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1594492_1595419_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595555_1596296_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596462_1597839_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598020_1598926_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600577_1602380_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1602497_1603148_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603246_1604197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604218_1605439_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605624_1607037_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607100_1608168_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608167_1609655_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609664_1610609_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610768_1611467_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611544_1612450_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612469_1613420_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	1649369	1704960	4105342	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649369_1650320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650378_1651152_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651144_1652701_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652697_1653648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654974_1655577_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655816_1656518_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656511_1657294_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657478_1658429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658527_1659265_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659454_1660213_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660259_1661249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661426_1662395_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663934_1664903_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664911_1665853_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666326_1667337_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667327_1668842_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668838_1670185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670187_1671222_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671271_1672897_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673449_1674400_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674504_1675452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675505_1677320_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677312_1677987_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678116_1681191_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681204_1681504_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681818_1682442_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682685_1683555_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683532_1684477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684562_1685489_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685601_1686381_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686371_1687568_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687598_1688549_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688770_1689460_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689524_1690280_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690331_1691324_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691333_1692287_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692402_1693365_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694766_1695195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695191_1696142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696435_1697158_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697596_1698784_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1698787_1699138_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700887_1701859_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701872_1702586_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702590_1703508_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703614_1703911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1704009_1704960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	1937723	2007375	4105342	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1937723_1940381_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1940458_1941661_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1941657_1942170_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1942292_1942730_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1943006_1943957_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1944055_1945006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1945169_1947065_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1947178_1947346_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1947409_1947646_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1948014_1949166_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|1950729_1951680_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1952131_1953133_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1953305_1954163_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1954159_1955422_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1955522_1955897_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1955969_1957157_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1957241_1958012_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1958125_1958890_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1958840_1960142_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1960138_1960945_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1962689_1963661_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1963817_1964330_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1964488_1965463_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1966463_1967258_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1967283_1968090_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1968200_1968791_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1968801_1969980_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1970082_1970457_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1970709_1972041_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1972107_1975338_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1976828_1977575_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1977659_1978121_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1978158_1979217_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1979179_1981009_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1981048_1981621_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1983045_1983867_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1984185_1985508_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1985867_1986503_+	membrane protein	NA	NA	NA	NA	NA
WP_077077580.1|1986462_1987413_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1988283_1989156_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1989233_1990373_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1990731_1991988_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1991993_1992521_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1992525_1993344_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1993343_1994066_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1994087_1994402_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1994419_1995568_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1995598_1996474_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1996470_1997790_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1997862_1999059_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1999069_2000557_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2003151_2004051_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2004188_2005154_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2005252_2006203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2006424_2007375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	2018871	2068267	4105342	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2018871_2019822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2020959_2021256_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2021430_2022783_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2022925_2023942_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2025921_2026935_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_077077582.1|2027021_2027927_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2028083_2028428_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2028585_2029044_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2029057_2031274_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2031270_2032332_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2032360_2033335_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2033286_2034105_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2034117_2034726_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2034900_2035296_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2035314_2036754_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2036782_2037130_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2037148_2038099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2038751_2039702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2039785_2041603_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2041676_2042324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2042336_2043266_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2043435_2043900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2044147_2044828_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2044876_2046568_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2046583_2047135_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2047131_2047503_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2047615_2048452_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2048462_2048987_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2049084_2049264_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2049393_2050368_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2050498_2050855_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2050844_2051720_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2051818_2052703_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2052724_2054020_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2054968_2055619_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2055706_2057227_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2057484_2059350_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2060395_2061346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2061363_2061504_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2062318_2062678_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2062665_2064102_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2064098_2064752_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2064748_2065942_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2066045_2067320_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2067316_2068267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	2079471	2120162	4105342	protease,transposase,tRNA	Klosneuvirus(25.0%)	36	NA	NA
WP_005013747.1|2079471_2080422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2080520_2081471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2081430_2081844_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2082128_2082428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2082837_2085120_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_010930784.1|2085805_2087836_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2087855_2088068_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2088345_2088885_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2088998_2090294_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2090370_2091528_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2091711_2092611_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2092629_2093934_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2093899_2095006_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2095093_2095330_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2095468_2096539_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2096542_2097898_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2097924_2099082_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2099087_2099726_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2099727_2101023_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2101072_2102359_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2102374_2102881_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2102877_2104026_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2104053_2104479_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2104801_2107684_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2107776_2108532_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2109297_2110647_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2110745_2111696_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2111794_2112745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2112818_2113292_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2113317_2114526_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2114522_2115296_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2115295_2115919_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2116084_2116345_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2116648_2117230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2117296_2117551_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2117537_2120162_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	2147945	2213494	4105342	protease,transposase,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2147945_2148896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2149096_2149906_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2150030_2150981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2150977_2151871_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2151995_2152190_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2152189_2152531_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2152540_2154403_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2154532_2155045_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2155047_2155371_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2155372_2155783_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2155820_2157032_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2157049_2157562_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2157777_2158269_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2158521_2160558_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2160635_2161838_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2161966_2162617_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2164174_2165125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2165695_2165908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2165925_2166657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2166691_2167333_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2167325_2167994_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2170206_2170983_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2171004_2172162_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2172158_2172590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2172586_2173384_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2173403_2173805_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2173871_2174843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2174908_2176132_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2176359_2177310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2177433_2179887_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2180075_2181380_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2181484_2182138_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2182140_2183451_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2183629_2184208_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2184319_2184520_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2184865_2185432_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2185515_2185719_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2186025_2186346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2186387_2186669_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2186743_2188000_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2188382_2188712_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2190282_2191104_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2191103_2192243_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2192249_2193146_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2193160_2195068_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2195427_2198040_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2198092_2200393_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2200389_2201598_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2201859_2202234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2202230_2203181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2203279_2205274_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2205333_2206299_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2206288_2209150_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2209152_2209659_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2209763_2210972_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2210973_2211912_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2212073_2212547_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2212543_2213494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	2299671	2363249	4105342	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2299671_2300622_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|2300720_2301671_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2301972_2302449_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2303072_2304710_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2304740_2306054_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2306187_2306505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2306605_2307928_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2307924_2308875_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2309404_2310427_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2310455_2311286_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2311302_2313000_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2313064_2314141_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2314300_2315164_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2315194_2315764_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2315780_2316632_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2317689_2318571_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2318645_2319635_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2319697_2320648_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2320710_2321568_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2321627_2322116_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2323688_2324879_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2324875_2326462_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2326480_2327548_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2327652_2329197_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2329616_2331191_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2331307_2332315_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2332311_2333151_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2333155_2334793_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2334789_2335740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2335757_2335901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2335882_2337157_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2337186_2337477_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2337549_2338563_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2338582_2339845_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2339847_2340771_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2340767_2342261_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2342271_2343204_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2343385_2344711_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2344745_2346101_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2346161_2347682_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2347836_2348568_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2348665_2349976_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2349991_2350903_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2350893_2351487_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2351548_2351935_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2351946_2352417_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2352428_2353052_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2353072_2355820_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2362298_2363249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	2607660	2674159	4105342	transposase	uncultured_Caudovirales_phage(40.0%)	55	NA	NA
WP_005012067.1|2607660_2608611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2608980_2609553_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2609555_2610566_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2610558_2611059_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2611069_2611411_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2611479_2612214_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2612230_2612500_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2612522_2613311_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2613357_2614374_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2614590_2616033_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2616211_2617831_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2617951_2619772_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2619850_2621383_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2621416_2623063_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2623132_2624155_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2624172_2625306_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2625308_2625998_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2625997_2626783_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2626826_2627591_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2627629_2629051_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2629116_2629821_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2629868_2630288_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2630300_2630708_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_077077585.1|2631727_2632018_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2632035_2632518_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2637023_2638178_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2638483_2639500_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2639746_2640535_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2640601_2641282_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2641278_2642049_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2642147_2643098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2643153_2644071_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2644081_2645260_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2645279_2646275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2647863_2648472_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2648459_2649500_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2649517_2650480_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2650476_2651670_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2651666_2652464_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2652489_2653476_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2653494_2655534_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2655735_2656416_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2656429_2657341_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2657337_2657916_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2658054_2658960_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2658967_2662387_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2662374_2664975_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2665930_2666563_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2666956_2667715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2667711_2668914_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2669101_2670052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2670959_2672105_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2672091_2672847_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2672963_2673143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2673208_2674159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	2856562	3007160	4105342	holin,tRNA,transposase	uncultured_Mediterranean_phage(15.79%)	119	NA	NA
WP_010929956.1|2856562_2857513_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2857611_2858493_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2858570_2859950_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2859988_2860834_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2860849_2861164_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2861196_2861733_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2861905_2862481_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2862583_2863321_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2863388_2865026_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2865133_2865889_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2865876_2866839_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2866946_2867741_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2867802_2869878_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2870042_2872418_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2872498_2873854_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2875332_2876055_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2876109_2877093_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2877222_2878173_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2878169_2879072_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2879159_2879918_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2879930_2881022_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2881119_2882547_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2882776_2883991_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2884036_2886907_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2889317_2889806_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2889931_2892628_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2892782_2895065_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2895228_2895861_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2895959_2896910_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2896956_2897511_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2897578_2898424_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2898493_2899462_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_145926315.1|2899461_2901258_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2903157_2907084_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2907819_2911050_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2911331_2912159_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2912192_2912888_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2912880_2914161_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2914170_2915148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2915129_2916830_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2916932_2918036_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2918066_2918822_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2918828_2920349_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2920391_2920694_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2920690_2921323_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2921401_2923267_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2923263_2924058_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2924086_2925202_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2926106_2926985_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2926984_2927809_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2927976_2928927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2929139_2931989_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2931970_2932699_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2932839_2934303_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2934299_2934671_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2934688_2936002_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2936038_2936497_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2936451_2936592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2936609_2937560_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2937556_2938570_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2938709_2939696_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2940054_2940762_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2941342_2942293_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2942444_2943047_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2943065_2943698_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2943742_2943994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2943935_2945822_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2945840_2946683_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2946679_2948038_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2948258_2949053_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2949283_2950777_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2951012_2953094_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2953288_2954329_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2954463_2955480_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2955501_2956359_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2956403_2957180_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2957392_2957530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2957547_2958498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2958524_2958989_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2960195_2962484_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2962600_2963473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2963515_2964670_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2964704_2965535_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2965618_2967163_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2967205_2967565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2967566_2967980_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2968020_2968338_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2968422_2969139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2969402_2970824_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2970890_2973638_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2973970_2974987_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2975322_2975964_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2976054_2977491_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2977648_2978722_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2978718_2979855_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2979999_2980344_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2980410_2982291_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2982340_2983276_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2983608_2984625_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2985562_2986990_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2986986_2988009_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2987998_2988472_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2988612_2989500_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2989496_2991140_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2991136_2992144_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2992974_2993991_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2994090_2994723_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2994731_2995121_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2995173_2996226_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2997089_2998796_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2998869_2999370_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2999384_3001442_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3001468_3001762_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3001863_3002811_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3002823_3003699_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3003819_3004380_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3004414_3004738_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3005173_3005911_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_076879548.1|3006209_3007160_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	3028111	3100611	4105342	transposase	Bacillus_virus(16.67%)	58	NA	NA
WP_010929584.1|3028111_3029062_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029104_3030280_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030501_3032292_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032304_3033966_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033978_3036684_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036976_3038731_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038727_3039354_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039350_3040202_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3040331_3042392_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042578_3043193_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043338_3043590_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043659_3045042_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3045038_3048218_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049025_3049943_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3049994_3050726_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050785_3051358_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052866_3053883_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054020_3055070_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055174_3056125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056220_3056946_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057156_3057537_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057842_3058715_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058722_3059103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059256_3060531_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062018_3062927_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063724_3064789_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3066631_3067666_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067855_3068497_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068579_3070406_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070649_3071579_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071578_3072328_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072399_3073314_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073333_3074479_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074539_3075451_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075531_3076482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076580_3077165_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077199_3078189_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078185_3079127_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079123_3080344_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080386_3080701_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080892_3081252_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081253_3082969_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083156_3083828_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083842_3085171_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085167_3086067_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086153_3087239_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3087231_3088362_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3088364_3091046_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091416_3091998_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092123_3092849_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092845_3093523_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093738_3094920_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095692_3095875_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095904_3096855_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096984_3097377_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097653_3098565_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098689_3099664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099660_3100611_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	3232094	3301097	4105342	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3232094_3233045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3233041_3234061_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3234070_3236779_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3236926_3237583_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3237681_3238632_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3238779_3239673_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3239872_3241567_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3241601_3242528_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3242596_3243694_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3243712_3244576_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3244587_3245370_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3245366_3246485_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3246481_3248014_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3248054_3249062_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3249206_3249929_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3249944_3250967_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3251283_3252018_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3252102_3253848_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3253844_3254597_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3254641_3255598_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3255686_3256253_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3256260_3257121_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3257150_3257879_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3257910_3258594_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3259431_3260346_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3260410_3261319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3261409_3262834_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3262835_3264158_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3264154_3266293_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3266370_3271491_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3271591_3271900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3271969_3272527_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3272542_3274024_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3274078_3275932_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3276194_3277532_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3277566_3279564_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3279581_3281630_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3281760_3282627_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3282895_3283861_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3283975_3285124_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3285548_3285860_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3285893_3286154_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3286303_3287437_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3287507_3288644_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3288809_3289604_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3289666_3290110_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3290225_3291176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3291298_3291706_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3291778_3293974_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3294195_3295146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3295105_3295630_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3295761_3296733_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3296852_3299297_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3299312_3299903_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3300146_3301097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	3316543	3416656	4105342	tRNA,transposase,terminase,tail,protease	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3316543_3317494_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3318225_3318603_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3318587_3319289_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3319432_3320125_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3320124_3321228_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3321337_3323710_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3323706_3325266_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3325290_3326088_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3326119_3327265_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3327369_3328812_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3328814_3330044_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3332181_3333132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3334261_3334819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3334794_3335145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3335313_3336108_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3336104_3337154_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3337153_3337843_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3337929_3338427_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3338458_3339775_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3339791_3340766_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3340802_3341261_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3341260_3341941_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3341943_3342372_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3342424_3344155_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3344220_3344793_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3344773_3345460_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3345815_3346487_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3346815_3347037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3347036_3347318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3347314_3347830_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3347829_3348381_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3348359_3348602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3348606_3349419_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3349418_3349682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3349722_3349920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3349900_3350317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3350321_3354278_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3354270_3354660_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3354656_3355190_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3355257_3355617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3355626_3358239_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3358264_3358555_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3358572_3358902_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3358911_3359430_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3359684_3360185_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3360192_3360615_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3360611_3361010_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3361006_3361402_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3361401_3361590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3361603_3362086_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3362148_3362400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3363074_3364025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3364453_3365056_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3365178_3365421_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3365426_3366482_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3366510_3367929_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3367931_3369209_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3369195_3369681_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3370320_3371271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3371288_3371510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3371527_3372217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3372209_3372461_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3373015_3373627_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3373698_3373905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3374156_3375107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3375205_3376279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3376446_3377241_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3377280_3377805_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3377797_3379540_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3379749_3380508_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3380510_3381218_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3381234_3382116_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3382126_3382885_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3382853_3383609_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3383678_3385097_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3385118_3385769_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3385902_3386238_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3386326_3387277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3387353_3389174_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3389178_3390252_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3390374_3391343_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3391416_3392328_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3392346_3392919_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3392999_3393548_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3393547_3395137_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3395206_3395446_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3395486_3396512_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3396577_3397759_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3397855_3398308_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3398317_3399658_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3399974_3401012_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3401393_3401753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3401836_3402778_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3402852_3403803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3404096_3405191_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3405281_3406154_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3406175_3407015_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3407090_3408608_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3408704_3409805_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3409821_3410244_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3410266_3410479_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3410525_3411446_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3411628_3412378_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3412380_3412710_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3412997_3414350_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3414361_3414745_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3414806_3415607_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3415705_3416656_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	3577325	3624174	4105342	transposase	Lake_Baikal_phage(25.0%)	39	NA	NA
WP_005012067.1|3577325_3578276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3578392_3579460_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3579535_3582664_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3583171_3584137_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3584139_3584811_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3584967_3585927_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3585934_3586597_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3586593_3587544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3587642_3588593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3588714_3589968_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3589945_3590908_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3591039_3591534_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3591533_3592766_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3593511_3593793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3593779_3594766_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3594909_3595314_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3595455_3598842_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3598872_3600336_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3600344_3601973_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3602058_3602718_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3602747_3603188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3603698_3603902_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3604077_3604983_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3605081_3606032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3606130_3607081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3608862_3610056_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3610121_3611150_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3611176_3612349_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3612474_3613452_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3613462_3614434_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3614500_3615286_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3615278_3616511_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3616706_3617462_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3617572_3618091_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3619879_3621280_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3621379_3621724_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3621812_3622283_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3622693_3623092_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3623223_3624174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011695	Bordetella pertussis strain H437 chromosome, complete genome	4105342	4004410	4069322	4105342	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4004410_4004896_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4004984_4005122_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4005114_4006095_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4006361_4007171_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4007210_4007891_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4007884_4008343_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4008354_4008717_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4008799_4009483_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4009538_4009847_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4009865_4010180_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4010176_4012651_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4012658_4014050_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4014046_4014232_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4014210_4014912_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4014908_4015730_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4015710_4016835_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4016827_4017847_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4018052_4018943_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4019187_4019979_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4020061_4020436_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4020413_4021823_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4021815_4023198_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4023532_4025137_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4025214_4026186_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4026196_4027123_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4027513_4028464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028633_4029860_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030059_4030926_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030918_4031881_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031981_4032932_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|4033030_4033981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034079_4035030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035026_4036520_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036516_4039624_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039620_4042689_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042685_4043936_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4044116_4044869_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4044910_4045555_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4045563_4046544_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046643_4047387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4047469_4047817_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047914_4048757_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048801_4049689_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049715_4049904_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050001_4051459_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051445_4052972_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052990_4053458_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4053457_4054480_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4054600_4055341_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4055395_4056496_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056497_4057688_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057807_4058824_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059142_4059814_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059810_4060719_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060930_4061578_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4065438_4066506_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066516_4067326_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067415_4068189_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4068189_4068354_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4068371_4069322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
