The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	0	70036	4101131	transposase,tRNA	Natrialba_phage(12.5%)	60	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929579.1|29141_30368_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929581.1|31069_31978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995008.1|32163_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814400.1|36949_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815267.1|45113_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929598.1|62442_63279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_019248465.1|64067_64385_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	77634	136108	4101131	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_076879533.1|96203_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_019248163.1|101788_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	164893	219510	4101131	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	48	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_029443820.1|170176_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.5	5.3e-42
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_077068973.1|175184_175364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486043.1|182382_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194123_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879535.1|196450_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.4e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010929698.1|208219_209269_-	cyclase	NA	NA	NA	NA	NA
WP_003819081.1|209265_210090_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|212204_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	225502	287026	4101131	transposase,protease,tRNA	Bacillus_phage(25.0%)	56	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013037.1|226439_226640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302767.1|237306_237480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268761_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_085964336.1|275149_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.4e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279586_279727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_019247426.1|281474_282329_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
>prophage 5
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	391906	449415	4101131	transposase	Orpheovirus(14.29%)	52	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219862.1|392843_393011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014906040.1|401067_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	6.1e-59
WP_023994705.1|402076_402220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003819219.1|404633_405875_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879611.1|412379_413357_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_077274092.1|418538_418847_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	591469	652659	4101131	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591469_592420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592895_593786_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593782_594604_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003808546.1|613547_614543_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_023853074.1|620916_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625095_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627361_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154219861.1|638776_638941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640145_641579_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_003814191.1|642117_642786_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648341_649223_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	657977	704174	4101131	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(17.39%)	52	NA	NA
WP_003814219.1|657977_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931452.1|680590_680803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_010931450.1|681959_682280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931449.1|682272_682971_-	membrane protein	NA	NA	NA	NA	NA
WP_023853183.1|682985_683207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931448.1|684850_685300_+|terminase	terminase	terminase	C7U0W1	Enterobacteria_phage	61.5	5.2e-39
WP_010931447.1|685286_686564_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853024.1|691438_692086_+	hypothetical protein	NA	R9TJ64	Synechococcus_phage	71.1	2.7e-65
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692893_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931436.1|694310_694811_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695065_695584_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695593_695923_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695940_696231_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696256_698869_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698878_699238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699305_699839_+	DUF1833 domain-containing protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699835_700225_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700217_704174_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	710340	764270	4101131	transposase,tRNA	Planktothrix_phage(50.0%)	49	NA	NA
WP_003814636.1|710340_712071_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712123_712552_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712554_713235_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713234_713693_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713729_714704_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714720_716037_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716068_716566_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716652_717342_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717341_718391_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718387_719182_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719350_719701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719676_720234_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_076879618.1|721158_721377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|721363_722314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814416.1|724592_725681_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725683_727126_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727230_728376_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728407_729205_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729229_730789_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730785_733158_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733267_734371_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734370_735063_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735206_735908_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735892_736270_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737001_737952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852750.1|737938_738082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814441.1|738111_738984_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739324_739543_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739582_740962_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741003_742401_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742440_744093_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744096_744981_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744980_745922_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746000_747620_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747786_748602_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748669_749239_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749239_750190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750844_751942_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751975_753241_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753398_754349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754592_755183_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755198_757643_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757762_758734_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758865_759390_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759349_760300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760521_762717_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762789_763197_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077068980.1|763144_763333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|763319_764270_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	886859	954835	4101131	transposase	Bacillus_phage(33.33%)	59	NA	NA
WP_023994644.1|886859_887876_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888072_889056_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890654_892043_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892073_893063_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893173_894406_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894687_895488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895510_897742_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898529_898976_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898997_899744_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899887_900865_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901498_902110_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902103_903321_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903461_904412_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904408_905128_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905248_907408_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907498_907768_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907856_908063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908061_908589_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908607_909387_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909554_910571_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910643_911135_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911145_912861_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914024_914975_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248601.1|914971_916822_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917202_917862_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930053.1|917949_918102_+	vir-repressed protein	NA	NA	NA	NA	NA
WP_003809770.1|918210_918378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918389_919070_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919351_920068_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920082_921384_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923528_926417_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926640_927993_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928021_928543_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928539_929994_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930028_930277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930382_931258_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931283_932339_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932351_933143_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933175_934546_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_023995501.1|935598_935736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|935722_936673_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936725_936947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937106_937319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937438_938557_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938653_938869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939062_939314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939426_940377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940373_940757_-	ferredoxin	NA	NA	NA	NA	NA
WP_010930067.1|940811_942629_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942775_943603_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943648_944629_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944625_944838_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944834_946016_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946179_946914_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946915_949528_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949663_951577_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952192_952603_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952700_953786_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953884_954835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	978013	1048277	4101131	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|978013_978964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|979044_979956_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|980016_981162_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|981181_982096_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|982167_982917_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|982916_983846_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|984089_985916_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|985998_986640_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821528.1|986829_987864_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|989700_990765_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|991562_992471_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|993958_995233_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|995386_995767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|995774_996647_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|996952_997333_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|997543_998269_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|998364_999315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999419_1000469_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000606_1001623_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003131_1003704_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003763_1004495_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004546_1005464_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006271_1009451_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009447_1010830_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_077085656.1|1010899_1011148_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_023853098.1|1011293_1011944_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012094_1014209_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014284_1015136_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015132_1015759_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015755_1017510_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_077085657.1|1017802_1020508_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020520_1022182_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022194_1023985_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024206_1025382_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025424_1026375_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026473_1027214_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027408_1029445_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029462_1030473_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030590_1031784_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031813_1032587_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032583_1033774_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033799_1034738_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034734_1037083_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_029443834.1|1037237_1037945_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037982_1039116_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039208_1039361_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039392_1039941_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039959_1040445_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040622_1041561_+	curved DNA-binding protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041563_1041881_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041926_1042871_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044551_1045202_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045255_1045591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045587_1046448_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046464_1046746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046819_1047083_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047326_1048277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	1060495	1117877	4101131	transposase,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	47	NA	NA
WP_010931363.1|1060495_1061512_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062342_1063350_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063346_1064990_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_023995116.1|1064986_1065889_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066014_1066488_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066477_1067500_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067496_1068924_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069861_1070878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071210_1072146_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072195_1074076_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074142_1074487_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074631_1075768_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075764_1076838_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076995_1078432_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078522_1079164_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079499_1080516_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080848_1083596_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083662_1085084_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085347_1086064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086148_1086466_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086506_1086920_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086921_1087281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087323_1088868_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088951_1089782_+	transglycosylase	NA	NA	NA	NA	NA
WP_010930164.1|1089816_1090971_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091013_1091886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092002_1094291_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095497_1095962_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095988_1096939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097306_1098083_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098127_1098985_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099006_1100023_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100157_1101198_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101392_1103474_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103709_1105203_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105433_1106228_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106448_1107807_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107803_1108646_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108664_1110551_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930175.1|1110788_1111421_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111439_1112042_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_023995509.1|1112045_1112207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1112193_1113144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930177.1|1113946_1114747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812707.1|1114790_1115777_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115916_1116930_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116926_1117877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	1153229	1218813	4101131	transposase,tRNA	Erysipelothrix_phage(33.33%)	53	NA	NA
WP_023853221.1|1153229_1155026_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155025_1155994_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156063_1156909_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156976_1157531_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157577_1158528_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158626_1159259_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159423_1161706_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161860_1164557_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164682_1165171_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167581_1170452_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170497_1171712_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171941_1173369_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_019248962.1|1173409_1174558_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174570_1175329_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175416_1176319_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176315_1177266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177395_1178379_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178433_1179156_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180634_1181990_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182070_1184446_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184610_1186686_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186747_1187548_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187649_1188612_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188599_1189355_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189462_1191100_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191167_1191905_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192007_1192583_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192755_1193292_+	membrane protein	NA	NA	NA	NA	NA
WP_003813580.1|1193294_1193639_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193654_1194500_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194538_1195918_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195995_1196877_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196975_1197926_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197922_1198333_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198440_1199295_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199287_1200250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200295_1201420_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_010930221.1|1201531_1202404_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202528_1203308_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203461_1204883_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205317_1207015_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_003811651.1|1207043_1207166_+	membrane protein	NA	NA	NA	NA	NA
WP_010930225.1|1207241_1208183_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208509_1209256_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209263_1210190_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210311_1211229_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211268_1212222_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212246_1212825_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214498_1215107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215184_1215538_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215621_1216611_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216813_1217764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1217862_1218813_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	1381378	1447878	4101131	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_010930208.1|1381378_1382329_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382394_1382574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930309.1|1382690_1383413_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383432_1384578_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385485_1386436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811370.1|1386623_1387826_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_003811372.1|1387822_1388581_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811375.1|1388974_1389607_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930311.1|1390562_1393163_+	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_010930312.1|1393150_1396570_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930313.1|1396577_1397483_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811381.1|1397621_1398200_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930314.1|1398196_1399108_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_010930315.1|1399121_1399802_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930316.1|1400003_1402043_+	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_014486069.1|1402061_1403048_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930317.1|1403073_1403871_+	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_003811389.1|1403867_1405061_+	CoA transferase	NA	NA	NA	NA	NA
WP_003811391.1|1405057_1406020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811393.1|1406037_1407078_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811396.1|1407065_1407674_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930318.1|1409262_1410258_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811400.1|1410277_1411456_+	mandelate racemase	NA	NA	NA	NA	NA
WP_003811401.1|1411466_1412384_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_010930208.1|1412439_1413390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812022.1|1413488_1414259_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_003812020.1|1414255_1414936_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930319.1|1415002_1415791_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931363.1|1416037_1417054_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930321.1|1417359_1418514_+	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_003817170.1|1423019_1423502_-	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_003817172.1|1423519_1423810_-	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_010930322.1|1423936_1424647_-	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_010930323.1|1424830_1425238_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_003817176.1|1425250_1425670_+	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930324.1|1425717_1426422_+	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817180.1|1426487_1427909_+	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_003817181.1|1427947_1428712_+	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_010930325.1|1428755_1429541_+	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_010930326.1|1429540_1430230_+	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930327.1|1430232_1431366_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930328.1|1431383_1432406_+	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930329.1|1432475_1434122_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930330.1|1434155_1435688_+	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930331.1|1435766_1437587_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930332.1|1437707_1439327_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_014486070.1|1439505_1440948_+	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010929632.1|1441164_1442181_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930333.1|1442227_1443016_-	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_003811859.1|1443038_1443308_-	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_015041547.1|1443324_1444116_-	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811855.1|1444127_1444469_-	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930335.1|1444479_1444980_-	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811852.1|1444972_1445983_-	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_003811850.1|1445985_1446558_-	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_005012067.1|1446927_1447878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	1476048	1514638	4101131	protease,transposase	Emiliania_huxleyi_virus(14.29%)	36	NA	NA
WP_010930352.1|1476048_1477383_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477435_1479772_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479897_1480461_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480469_1481561_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481632_1482088_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482088_1482883_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482879_1484061_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484047_1484653_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484649_1485423_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485434_1486262_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486423_1488787_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488854_1489574_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489697_1490123_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490157_1491108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491225_1492152_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492217_1493375_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493355_1493823_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493970_1494921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494937_1495372_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495361_1495712_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495908_1497063_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497059_1498232_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498279_1499173_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499218_1499656_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499715_1500405_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1500414_1501365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501463_1502414_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003819864.1|1502512_1503496_-	transaldolase	NA	H6WFR1	Cyanophage	29.2	5.9e-11
WP_010930365.1|1503758_1504856_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.3e-53
WP_010930366.1|1504866_1508109_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_003809593.1|1509130_1509775_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930367.1|1509785_1510685_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809599.1|1510732_1511818_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930368.1|1511814_1513509_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_023996304.1|1513542_1513701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1513687_1514638_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	1794984	1842999	4101131	transposase,tRNA	Moraxella_phage(16.67%)	44	NA	NA
WP_010930522.1|1794984_1795935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1796033_1798634_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1798740_1799745_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1799853_1801194_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1801234_1802263_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1802458_1803004_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1803000_1803561_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1803659_1804610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1804647_1805235_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1805252_1805636_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1806995_1808288_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1808422_1809463_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1809560_1810577_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1810844_1811492_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1811617_1812376_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_077274094.1|1812450_1813140_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.2e-32
WP_003811022.1|1813157_1814042_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1814038_1814818_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1814844_1815522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1815810_1816563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1816681_1818082_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1818105_1818504_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1818679_1818880_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1819018_1819747_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1819880_1821296_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1821299_1822163_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1822175_1822925_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1823107_1825123_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_029443816.1|1825104_1825653_-	arylesterase	NA	NA	NA	NA	NA
WP_077274081.1|1825729_1826449_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.6	1.4e-22
WP_005012067.1|1826547_1827498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1827596_1828547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1828695_1829034_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1829091_1829253_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1829284_1829485_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1829750_1832324_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930534.1|1832394_1834968_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1837494_1837983_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1838074_1839226_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1839279_1840101_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1840139_1841369_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1841497_1841938_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_076879558.1|1841882_1842062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1842048_1842999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	1904561	1963831	4101131	transposase,protease,tRNA	Klosneuvirus(40.0%)	52	NA	NA
WP_005013747.1|1904561_1905512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1905636_1906446_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_153302779.1|1906501_1906660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|1906646_1907597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1908870_1910088_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1911144_1912047_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1912123_1912996_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1913126_1913495_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1913552_1914599_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1914794_1916051_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1916055_1917393_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1917542_1918499_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1918601_1919534_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1919649_1919970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930580.1|1919971_1920322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1920369_1921944_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1921996_1922941_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1922958_1923789_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1923781_1925416_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1925412_1926768_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1927674_1929252_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1929255_1930530_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1930627_1931002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1932717_1933851_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1933888_1934494_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1934490_1935309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1935380_1938005_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1937991_1938246_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1938312_1938894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1939197_1939458_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1939623_1940247_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1940246_1941020_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1941016_1942225_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1942250_1942724_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1942797_1943748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1943846_1944797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1944895_1946245_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1947010_1947766_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1947858_1950741_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1951063_1951489_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1951516_1952665_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1952661_1953168_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1953174_1954470_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_010930792.1|1954510_1955815_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1955816_1956455_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1956457_1957618_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1957644_1959000_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1959003_1960074_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1960212_1960449_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1960536_1961643_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1961608_1962913_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1962931_1963831_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	1974071	2031568	4101131	transposase	Staphylococcus_phage(16.67%)	58	NA	NA
WP_005013747.1|1974071_1975022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1975120_1976071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879573.1|1976057_1976258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930782.1|1976270_1977356_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1977371_1978133_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1978129_1979053_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1979151_1979676_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1979684_1980428_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1980523_1980763_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1980776_1980929_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1981014_1982505_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1982596_1983535_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1983531_1983708_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1983710_1984373_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1985994_1986138_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1986134_1987109_-	membrane protein	NA	NA	NA	NA	NA
WP_153302783.1|1987145_1987289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1987275_1988226_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1988222_1989497_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_076879572.1|1989594_1990794_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1990790_1991444_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1991440_1992877_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1992864_1993224_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930768.1|1995143_1997009_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1997266_1998787_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1998874_1999525_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2000473_2001769_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2001790_2002675_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2002773_2003649_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2003638_2003995_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_076879571.1|2004068_2005100_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2005229_2005409_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2005506_2006031_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2006041_2006878_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2006990_2007362_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2007358_2007910_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2007925_2009617_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2009665_2010346_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2010593_2011058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2011227_2012157_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2012169_2012817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2012890_2014708_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2014791_2015742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154299520.1|2016246_2016408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|2016394_2017345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2017363_2017711_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2017739_2019179_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2019197_2019593_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2019767_2020376_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2020388_2021207_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2021158_2022133_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2022161_2023223_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2023219_2025436_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2025449_2025908_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2026065_2026410_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2026566_2027472_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2027558_2028572_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2030551_2031568_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2047118	2111487	4101131	transposase	Vibrio_phage(20.0%)	52	NA	NA
WP_005013747.1|2047118_2048069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068978.1|2048055_2048247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|2048290_2049241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2049339_2050305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2050442_2051342_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2053936_2055424_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2055434_2056631_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2056703_2058023_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2058019_2058895_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443721.1|2058925_2060095_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2060091_2060406_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2060427_2061150_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2061149_2061968_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2061972_2062500_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_029443722.1|2062505_2063771_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2064120_2065260_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2065337_2066210_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2067080_2068031_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2067990_2068626_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2068985_2070308_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_015041331.1|2070536_2071448_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	5.9e-42
WP_003810356.1|2072872_2073445_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2073484_2075314_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2075276_2076335_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2076372_2076834_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2076918_2077665_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2079155_2082386_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2082452_2083784_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2084036_2084411_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2084513_2085692_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2085702_2086293_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2086403_2087210_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930719.1|2087235_2088030_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2089030_2090005_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2090163_2090676_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2090832_2091804_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2093548_2094355_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023996008.1|2094351_2095488_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2095603_2096368_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2096481_2097252_-	spermidine synthase	NA	NA	NA	NA	NA
WP_076879569.1|2097336_2098548_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2098596_2098971_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2099071_2100334_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2100330_2101188_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2101360_2102362_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2102813_2103764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2105279_2106479_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2106847_2107084_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2107147_2107315_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2107428_2109324_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2109487_2110438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2110536_2111487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2297955	2359303	4101131	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297955_2298906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299022_2299742_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299914_2300901_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300901_2301384_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301387_2302671_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302667_2303606_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303602_2305312_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305321_2306569_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308179_2309469_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2310606_2311380_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312041_2312785_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312859_2313600_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313795_2314632_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314682_2315453_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315502_2316555_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316551_2317178_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_077274084.1|2317174_2318221_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318387_2319404_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319502_2320453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2323193_2324483_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810870.1|2324601_2325072_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325082_2326291_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326437_2326902_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326925_2327876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328860_2329634_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329630_2330629_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330713_2331490_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_076879556.1|2331645_2333313_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.6e-53
WP_003816541.1|2333630_2334755_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334881_2335505_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335501_2337403_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337451_2338246_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338258_2339260_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2339256_2339763_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2339755_2340604_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340701_2341244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341287_2342238_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342393_2342720_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2342716_2343001_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2342997_2343477_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343473_2345102_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345098_2345443_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345442_2348376_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349534_2350485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350583_2350880_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2350986_2351904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351908_2352622_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352635_2353607_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2355326_2355707_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355710_2356898_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2357336_2358059_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358352_2359303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2380094	2451248	4101131	transposase	Tetraselmis_virus(10.0%)	56	NA	NA
WP_005012067.1|2380094_2381045_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381597_2383223_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383272_2384307_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384309_2385656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2385652_2387167_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387157_2388168_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388641_2389583_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389591_2390560_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392099_2393068_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393245_2394235_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394281_2395040_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395229_2395967_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_153302777.1|2395917_2396079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2396065_2397016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397200_2397983_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397976_2398678_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398917_2399520_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154219857.1|2400704_2400860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2400846_2401797_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401793_2403350_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403342_2404116_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404174_2405125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405206_2406382_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406395_2408453_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408449_2409475_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2409486_2410776_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2410798_2411896_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2411892_2412783_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2412779_2414864_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2414895_2416065_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416106_2416847_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2416846_2417617_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930465.1|2418472_2419258_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2419284_2421369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2421536_2423492_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2423815_2424316_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2424414_2425941_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426078_2426966_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2426980_2427934_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2427985_2430076_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430091_2430478_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433171_2433975_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2435268_2436171_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2436235_2437012_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2437333_2438383_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2438506_2440177_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440181_2440976_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441074_2442025_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2442044_2442950_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2443027_2443726_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2443885_2444830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811170.1|2444839_2446330_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2446326_2447394_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2447457_2448870_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449055_2450276_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2450297_2451248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2535448	2597749	4101131	transposase,tRNA	Salmonella_phage(18.18%)	55	NA	NA
WP_005012067.1|2535448_2536399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2536497_2537268_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2537264_2537936_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2537932_2538574_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2538586_2539507_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2539667_2540828_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2540869_2541820_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2542418_2542643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2542807_2544502_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2544623_2544893_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2545008_2545407_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2545417_2546374_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2546510_2547056_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547076_2549026_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2549413_2550190_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550195_2550588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2551009_2551960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2551956_2553054_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553085_2554036_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2555817_2557059_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557070_2557844_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2557870_2558821_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2558919_2559702_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2559790_2561017_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2561742_2563128_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563146_2563752_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2563748_2565605_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565601_2566402_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566416_2567610_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567677_2568652_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2568774_2569998_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570108_2572313_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572607_2573267_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573274_2573481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2573819_2574575_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814022.1|2574590_2574752_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814023.1|2574845_2575361_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575633_2575951_+	virulence factor	NA	NA	NA	NA	NA
WP_003814025.1|2576138_2576387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576665_2578021_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_003814028.1|2578067_2579447_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579509_2580142_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_003814032.1|2580141_2582502_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582543_2583503_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583489_2584176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584172_2584505_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2584620_2585571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2585567_2587634_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2587633_2587906_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2588600_2588690_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2588689_2590474_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2590497_2592663_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2592673_2593273_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2596094_2596790_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2596798_2597749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2683866	2724535	4101131	transposase,tRNA	Salmonella_phage(33.33%)	45	NA	NA
WP_010929591.1|2683866_2684817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684927_2685110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685209_2685806_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2685989_2687081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687580_2687991_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2688049_2688391_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2688396_2690814_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690826_2691849_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691923_2692283_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2692298_2692496_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2692831_2693782_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023996094.1|2693768_2693930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816756.1|2693976_2694426_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2694422_2695373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302788.1|2695359_2695500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|2695483_2696932_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2697046_2697328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_153302789.1|2697280_2697445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2697431_2698382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698626_2699340_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699462_2699690_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2699984_2700623_-	DedA family protein	NA	NA	NA	NA	NA
WP_023994671.1|2700695_2701766_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701762_2702713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703128_2703653_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703656_2703926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704124_2705186_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2705269_2706904_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706905_2707709_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707737_2708697_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708700_2710215_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2710251_2711256_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711687_2712158_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712193_2712805_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712835_2713459_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713539_2715072_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2715106_2716348_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2716391_2717423_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2717419_2718589_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2718582_2719263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2719424_2720267_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2720429_2721401_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721572_2722451_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722473_2723544_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723584_2724535_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2780000	2852870	4101131	transposase,tRNA	Moraxella_phage(16.67%)	59	NA	NA
WP_003810909.1|2780000_2780417_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780527_2781160_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781188_2781632_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781653_2782745_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2782799_2783600_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783735_2784356_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2784495_2784969_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786108_2787059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787055_2794717_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2794957_2799004_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2799316_2799898_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799894_2801193_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2801272_2802301_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_076879546.1|2802224_2802575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2802561_2803512_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803508_2804459_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804775_2805381_+	fimbrial protein FimX	NA	NA	NA	NA	NA
WP_010931072.1|2805434_2806748_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806822_2807293_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2807292_2808081_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808091_2809744_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809831_2810782_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2811943_2812450_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812446_2813211_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2813226_2813511_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813575_2814565_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2814736_2815666_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815637_2816324_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2816357_2816903_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2816947_2818213_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2818209_2819112_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2820293_2821238_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2821332_2822850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2822891_2824520_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824627_2825509_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828621_2828996_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2829020_2829359_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2829402_2831037_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2831075_2832422_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2832529_2833951_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2834020_2834605_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2834707_2835658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835792_2836899_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836909_2838007_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838151_2839357_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2839363_2839885_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2839881_2840373_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2840369_2840621_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840601_2841087_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2841222_2844684_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_076879578.1|2844680_2845586_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845595_2846027_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2846273_2846777_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_023995849.1|2846788_2848255_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2848329_2849205_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849201_2850209_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850676_2850982_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851072_2851663_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2851853_2852870_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2856013	2922824	4101131	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2856013_2856964_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2857062_2858013_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2858009_2858804_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858835_2859540_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859614_2860415_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860411_2860819_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860815_2861457_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_019247695.1|2861449_2863471_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864710_2866042_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866038_2866989_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868695_2868962_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869669_2870008_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874561_2875164_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875260_2876550_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876607_2877339_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877335_2878139_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878135_2879224_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879220_2880150_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880298_2881444_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881465_2882416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882746_2886568_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886724_2887393_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887397_2889071_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889089_2890409_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_023995053.1|2890413_2892765_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.2e-164
WP_010931115.1|2892784_2894953_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2894949_2900139_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900228_2900543_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900770_2901016_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901110_2901629_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901728_2902934_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903049_2904447_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904563_2905142_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905214_2906606_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906773_2907724_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2908004_2908625_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908621_2909035_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909031_2910075_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910130_2910319_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910328_2911093_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911183_2911840_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911931_2912690_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912715_2914317_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914517_2915522_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915622_2915886_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2916003_2916780_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917370_2918321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920704_2921817_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2921873_2922824_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	2953210	2992399	4101131	transposase	Planktothrix_phage(50.0%)	38	NA	NA
WP_005012067.1|2953210_2954161_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879632.1|2954147_2954393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2954281_2955178_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957455_2959681_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959845_2960934_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960890_2961544_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961591_2962389_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962920_2963871_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963951_2965100_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965156_2966107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879633.1|2966093_2966312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814535.1|2966205_2966511_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966539_2966974_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966975_2968220_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968216_2968927_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968941_2969853_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970215_2970620_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970616_2971075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971081_2971990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2971986_2972853_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972839_2973667_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973677_2974805_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975882_2977121_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977162_2978425_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978431_2979184_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979235_2979421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979696_2980161_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980192_2980852_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2980996_2983105_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983101_2984052_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984155_2984776_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984879_2985620_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986754_2987879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987924_2988293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988534_2989485_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990520_2991063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740747.1|2991255_2991462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991448_2992399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	3376847	3497092	4101131	transposase,tRNA	Acinetobacter_phage(20.0%)	103	NA	NA
WP_023995489.1|3376847_3377798_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378202_3378847_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378871_3379456_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379556_3380174_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380176_3381892_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381888_3382197_-	urease subunit beta	NA	NA	NA	NA	NA
WP_015040527.1|3382213_3382849_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382875_3383178_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383278_3384133_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384320_3384545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384714_3384987_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385404_3385812_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386181_3386976_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387076_3388312_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388380_3389397_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029443830.1|3389393_3390785_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390781_3391978_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391974_3393513_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393509_3394769_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396709_3397660_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_153302791.1|3397646_3397823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931344.1|3398426_3399521_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399513_3400848_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400801_3401485_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401510_3402674_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3402670_3403672_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403671_3404544_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404540_3405290_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405286_3406078_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406074_3407214_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_033446332.1|3407522_3408275_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408308_3409091_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409094_3409484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3410623_3411487_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3411522_3412611_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412607_3413558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_080501793.1|3413544_3413958_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247959.1|3413911_3416890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417816_3418695_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005012067.1|3419659_3420610_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_127013039.1|3420596_3420785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3421692_3422643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3422639_3423107_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3423149_3423920_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3423940_3424741_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3424751_3426161_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3426255_3427041_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3427280_3428297_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3428404_3428797_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3428934_3429615_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_010931358.1|3429619_3430618_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3430686_3431637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814239.1|3433141_3433843_+	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010927010.1|3433842_3435267_+	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_010931361.1|3436336_3437677_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003820957.1|3437792_3439556_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3439667_3440546_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3440658_3441474_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3441477_3441729_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3441813_3442830_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3443160_3443382_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3445742_3446660_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3447157_3448366_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3448445_3450017_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3450134_3451070_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3451258_3452203_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814281.1|3452271_3452487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814283.1|3452770_3458488_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3458493_3459621_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3459676_3460303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3460574_3461591_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3461686_3462397_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3462393_3463383_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023852728.1|3463514_3465110_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3465112_3465850_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3466005_3466878_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3467146_3468367_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3468363_3469023_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3469094_3469727_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3469756_3470275_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3470285_3471395_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3471441_3472296_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3472297_3473200_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3474422_3475373_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3477129_3478119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3478294_3479083_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3479079_3480111_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3480129_3480693_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3480748_3482269_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3482532_3483237_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3483244_3483982_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3484087_3484462_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3484504_3485794_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3485790_3486960_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3486956_3487796_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3487855_3488791_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3488803_3489754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3489852_3490815_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3490846_3491206_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3491330_3492233_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3492234_3494007_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3494041_3494818_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3496141_3497092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	3512030	3570103	4101131	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3512030_3512981_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3513109_3514243_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3514286_3515192_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3515194_3516895_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3516891_3517812_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3517819_3518797_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3518855_3519890_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3521864_3522101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3522227_3523091_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3523179_3524001_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3524080_3524818_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3524814_3525807_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3525920_3526583_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3526627_3527776_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3530099_3531050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3531390_3532341_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3532439_3533390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3533686_3534184_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3534226_3536002_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_076879643.1|3536048_3536876_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3536882_3537617_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3538786_3539581_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3539870_3540461_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3540494_3541823_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3541897_3543043_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3543154_3544153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3544115_3544550_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3546066_3546951_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3546947_3548153_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3548149_3549010_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3549122_3550913_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3550953_3551619_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3551619_3551928_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3552093_3553380_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3554813_3555764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3557715_3558930_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3559035_3560025_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3560021_3560630_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3560642_3561272_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3561268_3561889_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3561920_3562712_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815179.1|3563554_3564019_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3564037_3564964_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3565017_3566304_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3567234_3568107_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3568103_3569054_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3569152_3570103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	3702226	3834086	4101131	integrase,transposase,tRNA	uncultured_Mediterranean_phage(10.34%)	118	3747919:3747936	3790443:3790460
WP_010929577.1|3702226_3703177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3703276_3704227_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3704223_3704859_-	transporter	NA	NA	NA	NA	NA
WP_003818466.1|3704988_3705888_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3705983_3706475_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3706521_3707487_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3708620_3709862_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3709975_3710992_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3711026_3711503_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3711645_3712554_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3712667_3713780_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_003818475.1|3713880_3714414_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3714502_3715753_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3715854_3716367_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_076879639.1|3716272_3716479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3716465_3717416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3717481_3718420_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3718442_3719069_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3719065_3719722_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3719718_3720321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807309.1|3720327_3720954_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.5e-07
WP_010929869.1|3721095_3721665_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3721735_3723055_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3723161_3723353_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3723604_3724894_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3725048_3726044_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3726128_3726803_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3726799_3727750_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068983.1|3727736_3727919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816336.1|3727911_3729153_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3729149_3730094_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3730212_3731163_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3731122_3732052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3732105_3732441_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3732485_3733250_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3733273_3734014_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248486.1|3734021_3735596_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	2.0e-13
WP_010929862.1|3735609_3736587_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929861.1|3736859_3737459_-	ureidoglycolate hydrolase	NA	NA	NA	NA	NA
WP_094145972.1|3737492_3744395_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3744841_3744973_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_019248159.1|3745004_3745166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929858.1|3745238_3745445_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3746449_3747109_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3747136_3748282_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3747919:3747936	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3748422_3748758_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3748832_3749693_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3749956_3750658_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3750827_3751223_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929851.1|3751332_3752283_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3752318_3752786_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3753019_3753397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3753393_3753576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3753579_3754566_+	DNA recombinase	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3754562_3755210_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3755267_3755795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929846.1|3755828_3757016_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_023853043.1|3757005_3757368_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	47.9	1.8e-13
WP_010929844.1|3757360_3757480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926403.1|3757480_3757681_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3757677_3758667_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3760153_3762124_-	DUF3120 domain-containing protein	NA	NA	NA	NA	NA
WP_003814626.1|3762365_3762764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3762772_3763696_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3764153_3765104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3765334_3767026_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3767074_3767347_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3767343_3767715_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3767810_3767945_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3768350_3769760_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816023.1|3769756_3770872_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.6e-41
WP_010929838.1|3770966_3773420_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3773538_3774330_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3774449_3775877_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3775915_3776887_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3777305_3778469_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3778556_3779402_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023995443.1|3780831_3780972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3780958_3781909_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3782457_3782832_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3782906_3783965_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3783988_3784939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3787820_3788990_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3789090_3790698_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3790443:3790460	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3790744_3792766_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3792794_3793040_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3793053_3794244_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3794439_3795405_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3795427_3796567_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3796778_3797741_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3797864_3799889_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3800085_3802329_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3802607_3803066_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3803993_3806615_-	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3806678_3809306_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3809457_3810522_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815975.1|3810518_3811292_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3811300_3812134_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3812146_3812926_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003818226.1|3812960_3814433_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3814460_3815219_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3815274_3817125_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3817218_3817695_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3817711_3818632_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3818738_3819239_+	SET domain-containing protein	NA	NA	NA	NA	NA
WP_010929826.1|3819612_3820305_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_153302770.1|3820459_3820627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3820613_3821564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3821560_3825334_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3825670_3827560_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3827571_3828465_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_003817654.1|3828490_3829366_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3829362_3830214_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3830275_3830956_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_023853185.1|3830959_3831319_+	outer membrane efflux domain protein	NA	NA	NA	NA	NA
WP_019247190.1|3831319_3832279_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3832299_3832788_-	D-beta-D-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3833069_3834086_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011692	Bordetella pertussis strain E024, complete genome	4101131	4000199	4065111	4101131	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4000199_4000685_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4000773_4000911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4000903_4001884_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4002150_4002960_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4002999_4003680_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4003673_4004132_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4004143_4004506_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4004588_4005272_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4005327_4005636_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4005654_4005969_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4005965_4008440_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4008447_4009839_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4009835_4010021_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4009999_4010701_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4010697_4011519_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4011499_4012624_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4012616_4013636_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_024000452.1|4013841_4014876_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4014976_4015768_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4015850_4016225_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4016202_4017612_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4017604_4018987_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4019321_4020926_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077274089.1|4020961_4021975_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4021985_4022912_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4023302_4024253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024422_4025649_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025848_4026715_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026707_4027670_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027770_4028721_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028819_4029770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029868_4030819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030815_4032309_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032305_4035413_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035409_4038478_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038474_4039725_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4039905_4040667_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4040699_4041350_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4041352_4042192_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042432_4043176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4043258_4043606_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043703_4044546_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044590_4045478_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045504_4045693_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045790_4047248_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047234_4048761_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048779_4049247_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4049246_4050269_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4050389_4051130_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4051184_4052285_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052286_4053477_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053596_4054613_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054931_4055603_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055599_4056508_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056719_4057367_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4061218_4062295_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062305_4063115_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063204_4063978_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023996063.1|4063997_4064174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4064160_4065111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
