The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	27282	70036	4101167	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_005012808.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	77634	136108	4101167	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	164894	225405	4101167	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	233337	285888	4101167	protease,transposase,tRNA	Bacillus_phage(25.0%)	46	NA	NA
WP_077082436.1|233337_234288_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|234284_235235_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|235333_236131_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|237080_237491_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|238512_239256_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|239299_240343_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|240513_242616_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|244026_244983_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|245001_245493_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|245489_246845_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|246845_247544_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|247540_248242_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|248494_249544_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|249649_250591_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|250587_252477_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|252563_253202_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|253344_254730_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|254660_255197_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|255348_256740_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|256756_257737_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|257872_258856_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|258920_259820_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|259926_261681_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|261688_262813_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|262826_263807_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|264537_265488_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|266047_266593_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|266718_268296_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|268311_269466_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|269479_269605_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|269601_271353_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|271349_273029_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|273091_273640_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|274782_275061_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|276104_277055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|277041_277257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|277332_277494_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|278160_278610_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|278619_279231_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|279389_280238_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|280263_281646_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|281710_282352_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|282491_282950_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|282974_283751_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|283804_284941_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|284937_285888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	389821	447330	4101167	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|389821_390772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|390908_391826_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|391822_392071_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|392067_393273_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|393345_394341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|394363_395584_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|395580_396225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|397955_398765_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|399069_400023_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|400121_401105_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|401031_401733_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|401781_402552_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|402548_403727_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|403894_405601_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|405597_406494_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|406534_408124_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|408173_409166_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|409234_409834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|410294_411275_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|411350_412301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|412389_413304_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|413300_413960_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|414049_414973_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|414978_415434_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|415430_416534_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|416492_416762_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|416721_418341_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|418337_419396_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|419525_420020_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|420112_421090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|421285_422491_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|422487_423999_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|424014_425328_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|425518_425698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|426107_426842_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|429286_430237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|430368_430767_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|431177_431648_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|431736_432081_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|432180_433581_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|435369_435888_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|435998_436754_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|436949_438182_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|438174_438960_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|439026_439998_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|440008_440986_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|441111_442284_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|442310_443339_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|443404_444598_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|446379_447330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	589384	650574	4101167	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589384_590335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590810_591701_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591697_592519_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592717_593209_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593227_594301_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594347_595451_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595526_596147_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596167_596677_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596731_596983_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597046_598180_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598187_598574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598570_601090_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601518_601857_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601853_602360_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602421_603222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603332_604274_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604367_605903_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607582_609433_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609436_610270_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610269_611211_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611462_612434_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612575_614864_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615170_616079_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616133_617099_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617173_618835_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618906_619617_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619765_620716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621414_621798_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621855_622458_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622475_622877_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622992_623904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623900_624482_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625276_626011_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626051_627101_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627248_627827_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628213_629191_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629284_633679_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633879_634728_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634886_635699_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635754_636705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636803_637604_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637665_638049_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638060_639413_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639700_640030_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640032_640782_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640964_641885_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641931_642144_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642166_642589_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642605_643706_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643802_645320_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645395_646235_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646256_647129_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647219_648314_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648607_649558_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649632_650574_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	655898	702089	4101167	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655898_656924_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656964_657204_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657273_658863_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658862_659411_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659491_660064_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660082_660994_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661067_662036_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662158_663232_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663236_665057_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665133_666084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666172_666508_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666641_667292_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667313_668732_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668801_669557_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669525_670284_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670294_671176_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671192_671900_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671902_672661_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672870_674613_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674605_675130_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675169_675964_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676131_677205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677303_678254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678505_678712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678783_679395_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679949_680201_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680193_680883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681139_682090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682729_683215_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683201_684479_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684481_685900_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685928_686984_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686989_687232_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687354_687957_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688385_689336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690010_690262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690324_690807_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690820_691009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|691008_691404_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691400_691799_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691795_692218_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692225_692726_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692980_693499_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693508_693838_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693855_694146_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694171_696784_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696793_697153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697220_697754_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697750_698140_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698132_702089_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	708255	762185	4101167	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708255_709986_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710038_710467_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710469_711150_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711149_711608_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711644_712619_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712635_713952_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713983_714481_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714567_715257_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715256_716306_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716302_717097_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717265_717616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717591_718149_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719278_720229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722366_723596_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723598_725041_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725145_726291_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726322_727120_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727144_728704_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728700_731073_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731182_732286_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732285_732978_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733121_733823_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733807_734185_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734916_735867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736026_736899_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737239_737458_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737497_738877_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738918_740316_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740355_742008_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742011_742896_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742895_743837_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743915_745535_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745701_746517_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746584_747154_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747154_748105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748759_749857_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749890_751156_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751313_752264_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752507_753098_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753113_755558_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755677_756649_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756780_757305_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757264_758215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758436_760632_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760704_761112_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929584.1|761234_762185_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	853063	913939	4101167	transposase	Vibrio_phage(25.0%)	51	NA	NA
WP_010929591.1|853063_854014_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854031_854586_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854587_855022_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855018_855453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855436_856240_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856256_857072_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019248500.1|857068_857884_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858030_858732_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858759_860718_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860800_861751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861971_862640_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862763_863870_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863882_866996_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866992_868486_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868500_869172_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869215_869710_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869850_870498_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870601_872650_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872646_874659_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874684_876019_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876127_877120_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877186_879271_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879295_880267_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880395_881427_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930021.1|881430_882582_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882752_883676_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883753_884578_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884774_885791_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885987_886971_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888569_889958_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889988_890978_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891088_892321_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892602_893403_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893425_895657_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896444_896891_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896912_897659_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897802_898780_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899413_900025_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900018_901236_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901376_902327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902425_903376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903372_904092_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904212_906372_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906462_906732_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906820_907027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907025_907553_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907571_908351_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908518_909535_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909607_910099_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910109_911825_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912988_913939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	934686	978977	4101167	transposase	Bacillus_phage(10.0%)	43	NA	NA
WP_010929591.1|934686_935637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935689_935911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936070_936283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936402_937521_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937617_937833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938026_938278_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938390_939341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939337_939721_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939775_941590_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941739_942567_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942612_943593_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943589_943802_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943798_944980_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945143_945878_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945879_948492_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948627_950541_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951156_951567_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951664_952750_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952848_953799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953795_954770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954894_955806_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956082_956475_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956604_957555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|957584_957767_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|958539_959721_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|959936_960614_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|960610_961336_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_005012067.1|961551_962502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930094.1|962510_963092_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963462_966144_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_023852687.1|966146_967277_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930097.1|967269_968355_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968441_969341_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969337_970666_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970680_971352_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971539_973255_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973256_973616_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973807_974122_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974164_975385_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975381_976323_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976319_977309_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977343_977928_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978026_978977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	998377	1070894	4101167	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998377_999328_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999432_1000482_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000619_1001636_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003144_1003717_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003776_1004508_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004559_1005477_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006284_1009464_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009460_1010843_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010912_1011164_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011309_1011924_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012110_1014171_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014300_1015152_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015148_1015775_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015771_1017526_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017818_1020524_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020536_1022198_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022210_1024001_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024222_1025398_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025440_1026391_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026489_1027230_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027424_1029461_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029478_1030489_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030606_1031800_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031829_1032603_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032599_1033790_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033815_1034754_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034750_1037099_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037253_1037895_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039224_1039377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039408_1039957_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039975_1040461_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040638_1041577_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041579_1041897_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041942_1042887_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044567_1045218_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045271_1045607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045603_1046464_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046480_1046762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046835_1047099_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047342_1048293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048591_1049329_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049764_1050088_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050122_1050683_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050803_1051679_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051691_1052639_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052740_1053034_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053060_1055118_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055132_1055633_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055706_1057413_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058276_1059329_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059381_1059771_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059779_1060412_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010930158.1|1060511_1061528_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062358_1063366_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063362_1065006_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1065002_1065890_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066030_1066504_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066493_1067516_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067512_1068940_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069877_1070894_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1074647	1135674	4101167	holin,transposase,tRNA	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1074647_1075784_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075780_1076854_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077011_1078448_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078538_1079180_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079515_1080532_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080864_1083612_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083678_1085100_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085363_1086080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086164_1086482_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086522_1086936_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086937_1087297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087339_1088884_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088967_1089798_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089832_1090987_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091029_1091902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092018_1094307_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095513_1095978_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096004_1096955_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097322_1098099_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098143_1099001_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099022_1100039_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100173_1101214_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101408_1103490_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103725_1105219_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105449_1106244_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106464_1107823_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107819_1108662_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108680_1110567_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110508_1110760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110804_1111437_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111455_1112058_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1112209_1113160_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113740_1114448_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114806_1115793_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115932_1116946_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116942_1117893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1118005_1118464_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118500_1119814_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119831_1120203_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120199_1121663_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121803_1122532_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122513_1125363_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125575_1126526_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126693_1127518_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127517_1128396_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129300_1130416_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130444_1131239_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131235_1133101_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133179_1133812_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133808_1134111_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134153_1135674_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 13
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1153244	1218827	4101167	transposase,tRNA	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_095585338.1|1153244_1155041_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155040_1156009_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156078_1156924_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156991_1157546_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157592_1158543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158641_1159274_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159437_1161720_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161874_1164571_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164696_1165185_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167595_1170466_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170511_1171726_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171955_1173383_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173480_1174572_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174584_1175343_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175430_1176333_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176329_1177280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177409_1178393_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178447_1179170_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180648_1182004_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182084_1184460_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184624_1186700_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186761_1187556_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187663_1188626_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188613_1189369_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189476_1191114_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191181_1191919_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192021_1192597_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192769_1193306_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193338_1193653_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193668_1194514_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194552_1195932_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196009_1196891_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196989_1197940_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197936_1198347_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198454_1199309_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199301_1200264_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200309_1201434_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201539_1202418_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202542_1203322_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203475_1204897_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205331_1207029_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207255_1208197_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208523_1209270_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209277_1210204_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210325_1211243_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211282_1212236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212260_1212839_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214512_1215121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215198_1215552_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215635_1216625_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216827_1217778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1217876_1218827_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1317963	1386450	4101167	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317963_1318914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319682_1320321_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321210_1321657_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321738_1322440_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322440_1323208_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323204_1324443_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324442_1325369_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325471_1326587_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326602_1327553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327906_1328488_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328484_1329318_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329528_1330842_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331018_1331900_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331919_1332771_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332823_1333912_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334022_1335150_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335384_1335996_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336094_1337045_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337266_1337644_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337791_1338289_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338285_1338813_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338946_1339762_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1339774_1340956_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1341003_1341897_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342023_1342494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342619_1343447_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343475_1344252_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344248_1344524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344538_1345003_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345014_1345716_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345825_1346326_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346408_1347587_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349214_1349550_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349737_1351186_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351243_1351588_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351694_1352234_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352326_1353277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1353375_1353783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354015_1354447_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1354628_1355033_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356269_1356593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356595_1357483_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357515_1357941_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358012_1358366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358605_1359112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359150_1360482_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360541_1361357_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361353_1362208_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365270_1367814_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369180_1370935_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370931_1373052_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373056_1375252_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375248_1378590_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381392_1382343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382408_1382588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382704_1383460_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383446_1384592_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385499_1386450_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1446941	1502429	4101167	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446941_1447892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449093_1449540_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449532_1451008_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1451004_1451760_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451752_1452763_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452752_1454429_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454741_1455074_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455087_1455483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455492_1455819_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1455815_1456142_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1456068_1457091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457087_1457438_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457485_1457914_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457921_1459295_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459435_1459813_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460075_1461383_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461443_1462274_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462270_1462759_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462800_1464321_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464364_1464841_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465644_1468242_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468271_1469093_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469819_1470569_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470752_1471631_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471728_1472445_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472459_1473020_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473186_1473951_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473970_1474828_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474824_1476024_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476063_1477398_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477450_1479787_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479912_1480476_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480484_1481576_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481647_1482103_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482103_1482898_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482894_1484076_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484062_1484668_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484664_1485438_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485449_1486277_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486438_1488802_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488869_1489589_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489712_1490138_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1490172_1491123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491240_1492167_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492232_1493390_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493370_1493838_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493985_1494936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494952_1495387_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495376_1495727_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495923_1497078_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1497074_1498247_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498294_1499188_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499233_1499671_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499730_1500420_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1500429_1501380_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|1501478_1502429_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1707594	1777246	4101167	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1707594_1710252_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1710329_1711532_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1711528_1712041_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1712163_1712601_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1712877_1713828_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1713926_1714877_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1715040_1716936_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1717049_1717217_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1717280_1717517_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1717885_1719037_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1720600_1721551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1722002_1723004_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1723176_1724034_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1724030_1725293_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1725393_1725768_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1725840_1727028_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1727112_1727883_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1727996_1728761_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1728711_1730013_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1730009_1730816_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1732560_1733532_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1733688_1734201_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1734359_1735334_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1736334_1737129_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1737154_1737961_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1738071_1738662_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1738672_1739851_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1739953_1740328_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1740580_1741912_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1741978_1745209_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1746699_1747446_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1747530_1747992_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1748029_1749088_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1749050_1750880_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1750919_1751492_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1752916_1753738_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1754056_1755379_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1755738_1756374_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1756333_1757284_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1758154_1759027_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1759104_1760244_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1760602_1761859_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1761864_1762392_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1762396_1763215_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1763214_1763937_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1763958_1764273_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1764290_1765439_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1765469_1766345_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1766341_1767661_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1767733_1768930_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1768940_1770428_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|1773022_1773922_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|1774059_1775025_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1775123_1776074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1776295_1777246_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1788742	1838138	4101167	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|1788742_1789693_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|1790830_1791127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|1791301_1792654_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|1792796_1793813_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|1795792_1796806_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|1796892_1797798_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|1797954_1798299_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|1798456_1798915_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|1798928_1801145_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|1801141_1802203_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|1802231_1803206_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|1803157_1803976_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|1803988_1804597_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|1804771_1805167_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|1805185_1806625_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|1806653_1807001_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|1807019_1807970_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1808622_1809573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|1809656_1811474_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|1811547_1812195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1812207_1813137_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|1813306_1813771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|1814018_1814699_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|1814747_1816439_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|1816454_1817006_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|1817002_1817374_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|1817486_1818323_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|1818333_1818858_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1818955_1819135_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|1819264_1820239_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|1820369_1820726_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|1820715_1821591_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|1821689_1822574_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|1822595_1823891_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|1824839_1825490_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|1825577_1827098_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|1827355_1829221_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1830266_1831217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|1831234_1831375_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|1832189_1832549_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|1832536_1833973_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|1833969_1834623_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|1834619_1835813_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|1835916_1837191_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|1837187_1838138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1849342	1917718	4101167	protease,transposase,tRNA	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|1849342_1850293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1850391_1851342_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|1851301_1851715_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|1851999_1852299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1852708_1854991_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|1855456_1855651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|1855676_1857707_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|1857726_1857939_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|1858216_1858756_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|1858869_1860165_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|1860241_1861399_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|1861582_1862482_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|1862500_1863805_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|1863770_1864877_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|1864964_1865201_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|1865339_1866410_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|1866413_1867769_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|1867795_1868953_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|1868958_1869597_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|1869598_1870894_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|1870943_1872230_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|1872245_1872752_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|1872748_1873897_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|1873924_1874350_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|1874672_1877555_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|1877647_1878403_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|1879168_1880518_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_005012067.1|1880616_1881567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|1881640_1882114_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|1882139_1883348_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|1883344_1884118_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|1884117_1884741_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|1884906_1885167_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|1885470_1886052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|1886118_1886373_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|1886359_1888984_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|1889055_1889874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|1889870_1890476_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|1890513_1891647_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|1893362_1893737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|1893834_1895109_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|1895112_1896690_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|1897596_1898952_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|1898948_1900583_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|1900575_1901406_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|1901423_1902368_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|1902420_1903995_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|1904042_1904402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|1904394_1904715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|1904830_1905763_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|1905865_1906822_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|1906971_1908309_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|1908313_1909570_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|1909765_1910812_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|1910869_1911238_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|1911368_1912241_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|1912317_1913220_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|1914276_1915494_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1916767_1917718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	1932996	1997817	4101167	protease,transposase,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|1932996_1933947_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|1934517_1934730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|1934747_1935479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|1935513_1936155_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|1936147_1936816_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|1939028_1939805_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|1939826_1940984_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|1940980_1941412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|1941408_1942206_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|1942225_1942627_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|1942693_1943665_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|1943730_1944954_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|1945181_1946132_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|1946255_1948709_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|1948897_1950202_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|1950306_1950960_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|1950962_1952273_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|1952451_1953030_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|1953141_1953342_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|1953687_1954254_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|1954337_1954541_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|1954847_1955168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|1955209_1955491_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|1955565_1956822_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|1957204_1957534_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|1959104_1959926_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1959925_1961065_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|1961071_1961968_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|1961982_1963890_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|1964249_1966862_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|1966914_1969215_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|1969211_1970420_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|1970681_1971056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1971052_1972003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|1972101_1974096_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|1974155_1975121_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|1975110_1977972_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|1977974_1978481_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|1978585_1979794_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|1979795_1980734_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|1980895_1981369_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|1981365_1982316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|1982426_1982867_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1982995_1984225_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|1984263_1985085_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1985138_1986290_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|1986381_1986870_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|1989420_1991970_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|1992040_1994614_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|1994879_1995080_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|1995111_1995273_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|1995330_1995669_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1995817_1996768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1996866_1997817_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	2297970	2359319	4101167	transposase,tRNA	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2297970_2298921_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2299037_2299757_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2299929_2300916_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2300916_2301399_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2301402_2302686_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2302682_2303621_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2303617_2305327_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2305336_2306584_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2308194_2309484_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2310621_2311395_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2312056_2312800_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2312874_2313615_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2313810_2314647_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2314697_2315468_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2315517_2316570_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2316566_2317193_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2317189_2318224_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2318402_2319419_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2319517_2320468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077082438.1|2323208_2324498_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2324616_2325054_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2325097_2326306_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2326452_2326917_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2326940_2327891_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2328875_2329649_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2329645_2330644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2330728_2331505_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2331660_2333265_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2333645_2334770_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2334896_2335520_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2335516_2337418_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2337466_2338261_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2338273_2339275_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2339271_2339721_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2339770_2340619_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2340716_2341259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2341302_2342253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2342409_2342736_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2342732_2343014_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2343013_2343493_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2343489_2345118_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2345114_2345459_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2345458_2348392_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2349550_2350501_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2350599_2350896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2351002_2351920_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2351924_2352638_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2352651_2353623_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2355372_2355723_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2355726_2356914_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2357352_2358075_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2358368_2359319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	2380110	2451264	4101167	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2380110_2381061_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2381613_2383239_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2383288_2384323_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2384325_2385672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2385668_2387183_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2387173_2388184_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2388657_2389599_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2389607_2390576_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2392115_2393084_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2393261_2394251_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2394297_2395056_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2395245_2395983_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2396081_2397032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2397216_2397999_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2397992_2398694_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2398933_2399536_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2400862_2401813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2401809_2403366_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2403358_2404132_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2404190_2405141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2405222_2406398_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2406411_2408469_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2408465_2409491_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2409502_2410792_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2410814_2411912_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2411908_2412799_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2412795_2414880_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2414911_2416081_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2416122_2416863_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2416862_2417633_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2418488_2419274_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2419300_2421385_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2421552_2423508_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2423831_2424332_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2424430_2425957_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2426094_2426982_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2426996_2427950_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2428001_2430092_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2430107_2430494_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2433187_2433991_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2435284_2436187_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2436251_2437028_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2437349_2438399_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2438522_2440193_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2440197_2440992_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2441090_2442041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2442060_2442966_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2443043_2443742_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2443901_2444846_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2444855_2446343_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2446342_2447410_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2447473_2448886_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2449071_2450292_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2450313_2451264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	2535465	2597766	4101167	transposase,tRNA	Salmonella_phage(18.18%)	54	NA	NA
WP_005012067.1|2535465_2536416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2536514_2537285_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2537281_2537953_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2537949_2538591_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2538603_2539524_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2539684_2540845_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2540886_2541837_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2542435_2542660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2542824_2544519_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2544640_2544910_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2545025_2545424_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2545434_2546391_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2546527_2547073_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2547093_2549043_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2549430_2550207_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2550212_2550605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2551026_2551977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2551973_2553071_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2553102_2554053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2555834_2557076_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2557087_2557861_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2557887_2558838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2558936_2559719_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2559807_2561034_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2561759_2563145_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2563163_2563769_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2563765_2565622_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2565618_2566419_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2566433_2567627_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2567694_2568669_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2568791_2570015_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2570125_2572330_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2572624_2573284_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2573291_2573498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2573836_2574592_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2574862_2575378_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2575650_2575968_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2576155_2576392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2576682_2578038_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2578084_2579425_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2579526_2580159_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2580158_2582528_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2582560_2583520_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2583506_2584193_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2584189_2584522_+	multidrug transporter	NA	NA	NA	NA	NA
WP_010929577.1|2584637_2585588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814040.1|2585584_2587651_-	cation acetate symporter	NA	NA	NA	NA	NA
WP_003814042.1|2587650_2587923_-	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_017685545.1|2588617_2588707_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_010930949.1|2588706_2590491_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_010930950.1|2590514_2592680_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_003814050.1|2592690_2593290_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_003814052.1|2596111_2596807_+	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_005013747.1|2596815_2597766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	2683883	2724552	4101167	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2683883_2684834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2684944_2685127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2685226_2685823_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2686006_2687098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2687597_2688008_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2688066_2688396_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2688413_2690831_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2690843_2691866_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2691940_2692300_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2692315_2692513_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2692848_2693799_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2693993_2694443_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2694439_2695390_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2695500_2696949_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2697063_2697309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2697448_2698399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2698643_2699357_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2699479_2699707_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2700001_2700640_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2700748_2701783_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2701779_2702730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2703145_2703670_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2703673_2703943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2704141_2705203_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2705286_2706921_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2706922_2707726_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2707754_2708714_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2708717_2710232_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2710268_2711273_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2711704_2712175_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2712210_2712822_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2712852_2713476_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2713556_2715089_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2715123_2716341_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2716408_2717440_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2717436_2718606_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2718599_2719280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2719441_2720284_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2720446_2721418_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2721589_2722468_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2722490_2723561_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2723601_2724552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	2780017	2852887	4101167	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2780017_2780434_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2780544_2781177_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2781205_2781649_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2781670_2782762_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2782816_2783617_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2783752_2784373_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2784512_2784986_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2786125_2787076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2787072_2794734_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_077082439.1|2794974_2799021_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2799333_2799915_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2799911_2801210_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2801289_2802318_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2802578_2803529_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2803525_2804476_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2804792_2805398_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2805451_2806765_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2806839_2807310_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2807309_2808098_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2808108_2809761_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2809848_2810799_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2811960_2812467_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2812463_2813228_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2813243_2813528_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2813592_2814582_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2814753_2815683_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2815654_2816341_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2816374_2816920_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2816964_2818230_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2818226_2819129_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2820310_2821255_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2821349_2822867_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2822908_2824537_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2824644_2825526_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2828638_2829013_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2829037_2829376_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2829419_2831054_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2831092_2832439_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2832546_2833968_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2834037_2834622_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2834724_2835675_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2835809_2836916_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2836926_2838024_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2838168_2839374_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2839380_2839902_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2839898_2840381_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2840386_2840638_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2840618_2841104_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2841239_2844701_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2844718_2845603_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2845612_2846044_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2846290_2846794_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2846871_2848272_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2848346_2849222_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2849218_2850226_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2850693_2850999_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2851089_2851680_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2851870_2852887_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	2856030	2922841	4101167	protease,transposase	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2856030_2856981_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2857079_2858030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2858026_2858821_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2858852_2859557_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2859631_2860432_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2860428_2860836_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2860832_2861474_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2861466_2863467_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2864727_2866059_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2866055_2867006_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2868712_2868979_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2869686_2870025_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2874578_2875181_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2875277_2876567_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2876624_2877356_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2877352_2878156_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2878152_2879241_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2879237_2880167_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2880315_2881461_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2881482_2882433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2882763_2886585_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2886741_2887410_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2887414_2889088_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2889106_2890426_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2890430_2892746_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2892801_2894970_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2894966_2900147_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2900245_2900560_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2900787_2901033_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2901127_2901646_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2901745_2902951_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2903066_2904464_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2904580_2905159_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2905231_2906623_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2906790_2907741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2908021_2908642_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2908638_2909052_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2909048_2910092_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2910147_2910336_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2910345_2911110_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2911200_2911857_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2911948_2912707_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2912732_2914334_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2914534_2915539_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2915639_2915903_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2916020_2916797_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2917387_2918338_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2920721_2921834_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2921890_2922841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	2953227	2996918	4101167	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2953227_2954178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2954298_2955195_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2957472_2959698_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2959862_2960951_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2960907_2961561_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2961608_2962406_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2962937_2963888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2963968_2965117_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2965173_2966124_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2966222_2966528_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2966556_2966991_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2966992_2968237_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2968233_2968944_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2968958_2969870_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2970232_2970637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2970633_2971092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2971098_2972007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2972003_2972870_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2972856_2973684_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2973694_2974822_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2975899_2977138_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2977179_2978442_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2978448_2979201_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2979252_2979438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2979713_2980178_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2980209_2980869_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2981013_2983122_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2983118_2984069_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2984172_2984793_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2984896_2985637_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2986771_2987896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2987941_2988310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2988551_2989502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2990537_2991080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991465_2992416_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2992412_2993321_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2993447_2994284_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2994796_2995906_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2995967_2996918_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	3181336	3243570	4101167	protease,transposase	Xanthomonas_phage(33.33%)	51	NA	NA
WP_005012067.1|3181336_3182287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3182295_3182844_+	phospholipid:lipid A palmitoyltransferase	NA	NA	NA	NA	NA
WP_003814557.1|3182840_3183449_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852720.1|3183631_3184090_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3184108_3185368_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3185420_3186233_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3186347_3186902_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_023998380.1|3186911_3187901_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3188080_3188800_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3188816_3191552_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3191731_3192718_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_003814566.1|3192759_3193254_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3193365_3194289_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3194517_3195702_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3195890_3197117_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3197121_3197943_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3197955_3198906_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3198902_3200309_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3200305_3201379_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3201375_3202569_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3202565_3204098_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3204094_3205264_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3205253_3208091_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3208087_3209818_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3209814_3210093_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3210092_3211187_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3211195_3211624_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3212426_3214235_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3214274_3215354_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3215350_3216544_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3216693_3216972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995307.1|3217301_3217667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3224418_3224895_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3225047_3226160_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3226227_3226788_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3226811_3227144_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3227127_3228816_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3228935_3229724_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3230431_3231382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3231826_3232138_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3232137_3232668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3232830_3233781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3234070_3234535_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3234549_3236055_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3236308_3237916_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3237971_3238877_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3239317_3240268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3240349_3240931_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3241355_3241661_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3241674_3243009_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3243030_3243570_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 28
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	3261993	3313912	4101167	holin,transposase,tRNA	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3261993_3262329_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3262328_3263171_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3263269_3264220_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3264284_3265256_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3265319_3266339_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3266340_3267714_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3267991_3268672_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3268747_3270811_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3270807_3271902_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3271916_3273176_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3273195_3274884_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3275158_3275911_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3276049_3277000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3277312_3278791_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3278797_3279907_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3279918_3280599_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3280620_3281376_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3281511_3282396_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3282483_3283065_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3283325_3283625_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3283776_3284256_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3284975_3286412_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3286408_3286912_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3286927_3287878_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3288405_3289179_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3289311_3290322_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3290473_3292129_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3292183_3292525_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3292538_3293978_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3294110_3294926_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3295119_3296070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3297457_3298405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3298631_3299372_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3299457_3300408_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3301849_3303421_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3303753_3305607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3305651_3308216_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3308634_3309585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3312450_3312945_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_005013747.1|3312961_3313912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	3375815	3429556	4101167	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3375815_3376766_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3377170_3377815_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3377839_3378424_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3378524_3379142_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3379144_3380860_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3380856_3381165_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3381181_3381799_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3381843_3382146_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3382246_3383101_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3383288_3383513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3383682_3383955_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3384372_3384780_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3385149_3385944_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3386044_3387280_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3387348_3388365_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3388376_3389753_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3389749_3390946_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3390942_3392481_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3392477_3393737_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3395677_3396628_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3397394_3398489_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3398481_3399816_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3399769_3400453_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3400478_3401642_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3401638_3402640_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3402639_3403512_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3403508_3404258_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3404254_3405046_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3405042_3406182_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3406457_3407243_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3407276_3408059_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3408062_3408452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3409591_3410455_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3410490_3411579_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3411575_3412526_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3412879_3415858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3416784_3417663_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3419611_3420562_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3420558_3421026_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3421068_3421839_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3421859_3422660_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3422670_3424080_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3424174_3424960_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3425199_3426216_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3426323_3426716_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3426853_3427534_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3427538_3428510_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3428605_3429556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	3435711	3495011	4101167	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3435711_3437475_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3437586_3438465_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3438577_3439393_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3439396_3439648_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3439732_3440749_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3441079_3441301_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3443661_3444579_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3445076_3446285_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3446364_3447936_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3448053_3448989_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3449177_3450122_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3450689_3456407_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3456412_3457540_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3457595_3458222_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3458493_3459510_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3459605_3460316_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3460312_3461302_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3461397_3463029_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3463031_3463769_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3463924_3464797_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3465146_3466286_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3466282_3466942_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3467013_3467646_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3467675_3468194_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3468204_3469314_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3469360_3470215_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3470216_3471119_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3472341_3473292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3475048_3476038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3476213_3477002_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3476998_3478030_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3478048_3478612_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3478667_3480188_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3480451_3481156_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3481163_3481892_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3482006_3482381_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3482423_3483713_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3483709_3484879_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3484875_3485715_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3485774_3486710_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3486722_3487673_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3487771_3488734_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3488765_3489125_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3489249_3490152_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3490153_3491926_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3491960_3492737_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3494060_3495011_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	3509949	3568022	4101167	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3509949_3510900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3511028_3512162_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3512205_3513111_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3513113_3514814_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3514810_3515731_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3515738_3516716_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3516774_3517809_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3519783_3520020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3520146_3521010_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3521098_3521920_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3521999_3522737_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3522733_3523726_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3523878_3524502_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3524546_3525695_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3528018_3528969_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3529309_3530260_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3530358_3531309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3531605_3532103_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3532145_3533921_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3533928_3534795_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3534801_3535536_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3536705_3537500_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3537789_3538380_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3538413_3539742_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3539816_3540962_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3541073_3542072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3542034_3542469_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3543985_3544870_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3544866_3546072_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3546068_3546929_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3547041_3548832_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3548872_3549517_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3549538_3549847_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3550012_3551299_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3552732_3553683_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3555634_3556849_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3556954_3557944_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3557940_3558549_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3558561_3559191_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3559187_3559808_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3559839_3560631_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3561482_3561938_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3561956_3562883_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3562936_3564223_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3565153_3566026_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3566022_3566973_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3567071_3568022_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011691	Bordetella pertussis strain D502 chromosome, complete genome	4101167	4000235	4065147	4101167	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4000235_4000721_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4000809_4000947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4000939_4001920_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4002186_4002996_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4003035_4003716_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4003709_4004168_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4004179_4004542_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4004624_4005308_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4005363_4005672_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4005690_4006005_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4006001_4008476_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4008483_4009875_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4009871_4010057_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4010035_4010737_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4010733_4011555_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4011535_4012660_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4012652_4013672_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4013877_4014768_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4015012_4015804_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4015886_4016261_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4016238_4017648_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4017640_4019023_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4019357_4020962_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4021039_4022011_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4022021_4022948_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4023338_4024289_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4024458_4025685_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4025884_4026751_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4026743_4027706_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4027806_4028757_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4028855_4029806_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4029904_4030855_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4030851_4032345_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4032341_4035449_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4035445_4038514_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4038510_4039761_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4039941_4040694_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4040735_4041380_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4041388_4042369_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4042468_4043212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4043294_4043642_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4043739_4044582_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4044626_4045514_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4045540_4045729_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4045826_4047284_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4047270_4048797_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4048815_4049283_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4049282_4050305_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4050425_4051166_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4051220_4052321_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4052322_4053513_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4053632_4054649_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4054967_4055639_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4055635_4056544_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4056755_4057403_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4061263_4062331_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4062341_4063151_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4063240_4064014_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4064196_4065147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
