The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	27282	71085	4108515	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|61523_61937_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	78683	137157	4108515	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|84572_85745_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|86530_87763_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|95337_95493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|102882_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|133731_134034_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	165942	220583	4108515	transposase,tRNA,protease	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_010929669.1|185375_189074_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189134_189698_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189705_190128_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|190155_190575_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|190603_191077_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|191176_191674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191828_194099_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|194147_195380_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195478_196429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|196527_197478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|197580_198216_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|198212_199106_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|199500_200601_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|200682_201057_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|201116_203981_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|204125_204866_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|204935_206147_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|206175_207144_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|207757_208708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|208864_209188_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|209292_210333_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|210338_211118_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|211163_211460_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|211485_211761_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|211817_212462_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|212461_213148_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|213277_214129_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|214179_214905_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|214936_216286_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|216397_217330_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|217787_220583_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	226575	289046	4108515	transposase,tRNA,protease	Bacillus_phage(25.0%)	55	NA	NA
WP_005012808.1|226575_227526_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|227744_228440_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|228456_229869_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|229981_231412_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|231453_233367_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|233685_234252_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|234342_235344_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|235458_236409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|236495_237446_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|237442_238393_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|238491_239289_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|240238_240649_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|241670_242414_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|242457_243501_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|243671_245774_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|247184_248141_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|248159_248651_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|248647_250003_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|250003_250702_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|250698_251400_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|251652_252702_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|252807_253749_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|253745_255635_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|255721_256360_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|256502_257888_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|257818_258355_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|258506_259898_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|259914_260895_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|261030_262014_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|262078_262978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|263084_264839_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|264846_265971_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|265984_266965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|267695_268646_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|269205_269751_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|269834_271454_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|271469_272624_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|272637_272763_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|272759_274511_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|274507_276187_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|276249_276798_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|277940_278219_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|279262_280213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|280230_280377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|280490_280652_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|280659_280800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|281318_281768_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|281777_282389_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|282547_283402_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|283421_284804_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|284868_285510_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|285649_286108_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|286132_286909_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|286962_288099_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|288095_289046_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	558480	617780	4108515	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_023852617.1|558480_559431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|560754_561531_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|561565_563338_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|563339_564242_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|564366_564726_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|564757_565720_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|565818_566769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|566781_567717_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|567776_568616_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|568612_569782_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|569778_571068_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|571110_571485_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|571590_572328_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|572335_573040_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|573303_574824_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|574879_575443_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|575461_576493_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|576489_577278_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|577298_577457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|577453_578443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|580199_581150_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|582372_583275_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|583276_584131_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|584177_585287_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|585297_585816_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|585845_586478_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|586549_587209_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|587205_588426_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|588694_589567_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|589722_590460_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|590462_592094_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|592189_593179_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|593175_593886_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|593981_594998_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|595269_595896_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|595951_597079_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|597084_602802_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|603369_604314_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|604502_605438_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|605555_607127_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|607206_608415_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|608912_609830_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|612190_612412_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|612742_613759_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|613843_614095_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|614098_614914_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|615026_615905_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|616016_617780_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	623935	677676	4108515	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|623935_624886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|624981_625953_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|625957_626638_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|626775_627168_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|627275_628292_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|628531_629317_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|629411_630821_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|630831_631632_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|631652_632423_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|632465_632933_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|632929_633880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|635828_636707_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|637633_640612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|640965_641916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|641912_643001_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|643036_643900_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|645039_645429_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|645432_646215_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|646248_647034_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|647309_648449_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|648445_649237_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|649233_649983_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|649979_650852_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|650851_651853_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|651849_653013_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|653038_653722_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|653675_655010_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|655002_656097_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|656863_657814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|659754_661014_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|661010_662549_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|662545_663742_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|663738_665115_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|665126_666143_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|666211_667447_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|667547_668342_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|668711_669119_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|669536_669809_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|669978_670203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|670390_671245_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|671345_671648_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|671692_672310_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|672326_672635_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|672631_674347_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|674349_674967_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|675067_675652_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|675676_676321_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|676725_677676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	726614	767613	4108515	transposase,integrase,tRNA,protease	Pseudomonas_phage(33.33%)	31	723862:723880	743750:743768
723862:723880	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|726614_727211_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|727207_727990_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|728062_729154_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|729433_730561_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|730902_731949_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|732096_735216_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|735217_738169_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|738184_739396_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_077069166.1|739579_740530_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|740546_741041_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|741044_741302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|741845_742757_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|742838_743123_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|743906_744857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
743750:743768	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|745275_747840_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|747884_749738_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|750070_751642_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|752910_753066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|753083_754034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|754119_754860_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|755086_756034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|757421_758372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994811.1|758389_758602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814139.1|758565_759381_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|759513_760953_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|760966_761308_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|761362_763018_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|763169_764180_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|764312_765086_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929969.1|765613_766564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|766662_767613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	777540	825158	4108515	holin,transposase,tRNA,protease	Bovine_alphaherpesvirus(10.0%)	47	NA	NA
WP_005012808.1|777540_778491_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|778629_779382_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_010931273.1|779620_781345_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_004566001.1|781364_782624_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|782638_783733_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_023995440.1|783729_785856_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931276.1|785868_786549_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|786826_788200_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|788201_789221_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|789284_790256_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|790320_791271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|791369_792212_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|792211_792547_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|792617_794036_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|794315_795356_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|795435_795687_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|795797_796961_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|797244_798099_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|798095_798986_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|799028_799940_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|799966_800659_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|800673_801654_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|801666_803808_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|803856_804825_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|804815_805484_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|805444_806380_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|806376_807273_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|807269_807992_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|807982_808147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|808320_808824_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|809100_810216_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|810358_810823_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|810970_811510_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|811531_812866_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|812879_813185_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|813609_814191_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|814272_815223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|815321_816272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|816712_817618_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023853019.1|817673_819278_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|819534_821040_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|821054_821519_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|821808_822759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268687.1|822776_822965_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820745.1|822921_823452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|823451_823763_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|824207_825158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	1009373	1103410	4108515	transposase	Bacillus_virus(30.0%)	88	NA	NA
WP_005012067.1|1009373_1010324_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1010426_1011089_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1011183_1011354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1011706_1012708_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1012710_1013907_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1013927_1014731_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1014811_1015108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1015138_1015702_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1015742_1016600_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1016607_1017357_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1017378_1018251_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1018279_1019059_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1019092_1019890_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1022544_1022937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1022930_1023791_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1023794_1024757_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1025533_1026223_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1027083_1028034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1028383_1029253_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1029323_1030019_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1030008_1030518_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1030514_1031735_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1031682_1032585_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1033471_1034758_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1034796_1036170_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1036208_1036910_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1037208_1038198_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1038298_1038760_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1038775_1039324_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1039465_1040941_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1041046_1042138_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1042141_1042924_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1042933_1043722_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1044847_1045282_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1045278_1046289_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1046332_1047259_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1047545_1047914_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1047966_1048113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995375.1|1048130_1049081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1049125_1051552_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1051600_1052293_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1052365_1053565_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1053582_1054488_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1054603_1055533_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1055558_1056905_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1056932_1057682_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1057695_1058478_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1058670_1059621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1059682_1060792_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1061304_1062141_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1062210_1063176_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1063172_1064123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1064140_1064311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1064508_1065051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1066086_1067037_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1067278_1067647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1067692_1068817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1069951_1070704_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1070795_1071416_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1071519_1072470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995726.1|1072466_1074575_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1074719_1075379_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1075410_1075875_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1076150_1076336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995722.1|1076387_1077140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931152.1|1077146_1078409_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1078450_1079689_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1080766_1081894_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1081904_1082732_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1082718_1083585_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1084951_1085356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1085447_1086398_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120814.1|1086415_1086580_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1086767_1087679_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1087693_1088404_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1088400_1089645_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1089646_1090081_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1090109_1090415_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1090513_1091464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1091520_1092675_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1092749_1093700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1094231_1095029_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1095076_1095730_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1095686_1096775_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1096939_1099165_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1101442_1102339_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1102292_1102442_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1102459_1103410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	1133796	1204767	4108515	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1133796_1134747_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1134803_1135916_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1138299_1139250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1139840_1140617_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1140734_1140998_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1141098_1142103_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1142303_1143905_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1143930_1144689_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1144780_1145437_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1145527_1146292_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1146301_1146490_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1146545_1147589_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1147585_1147999_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1147995_1148616_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1148896_1149847_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1150014_1151406_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1151478_1152057_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1152173_1153571_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1153686_1154892_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1154991_1155510_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1155604_1155850_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1156077_1156392_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1156481_1161671_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1161667_1163836_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1163891_1166207_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1166211_1167531_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1167549_1169223_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1169227_1169896_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1170052_1173874_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1174028_1174187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930800.1|1174204_1175155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1175176_1176322_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1176470_1177400_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1177396_1178485_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1178481_1179285_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1179281_1180013_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1180070_1181360_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1181456_1182059_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1186612_1186951_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1187658_1187925_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1189631_1190582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1190578_1191910_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1193170_1195171_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1195163_1195805_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1195801_1196209_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1196205_1197006_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1197080_1197785_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1197816_1198611_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1198607_1199558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1199656_1200607_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1200705_1201140_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1201222_1203559_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1203750_1204767_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	1252156	1333031	4108515	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1252156_1253107_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1253103_1254054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1254314_1255343_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1255422_1256721_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1256717_1257299_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1257611_1261658_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1261898_1269560_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1269556_1270507_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1271646_1272120_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1272259_1272880_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1273015_1273816_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1273870_1274962_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1274983_1275427_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1275455_1276088_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1276198_1276615_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1276607_1277300_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1277406_1277781_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1277857_1278667_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1278762_1279707_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1279745_1280717_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1280807_1281245_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1281303_1282185_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1283188_1284049_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1284081_1285464_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1285460_1286480_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1286852_1287347_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1287354_1288095_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1288175_1289780_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1289819_1290608_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1291810_1292899_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1293779_1294592_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1294604_1294913_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1295030_1296761_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1296762_1297908_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1298037_1298706_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1298827_1299295_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1299430_1300813_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1300809_1301934_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1301930_1304567_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1304982_1305933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1309679_1310291_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1310513_1311974_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1312070_1313663_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1314016_1314274_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1314275_1315616_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1315711_1316401_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1316413_1317844_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1319568_1320390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1320400_1321972_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1322000_1322978_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1323004_1323808_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1323804_1324599_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1324606_1325842_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1325834_1326269_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1327018_1327969_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1328590_1330318_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1330429_1331788_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1331844_1332063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1332080_1333031_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	1452426	1504579	4108515	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1452426_1453377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1453394_1453547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1453543_1453897_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1453909_1454272_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1454313_1454739_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1454941_1456198_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1456396_1457377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1457526_1458768_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1458866_1459817_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1459825_1460521_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1463342_1463942_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1463952_1466118_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1466141_1467926_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1467925_1468015_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1468709_1468982_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1468981_1471048_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1471044_1471995_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1472093_1473044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1473159_1473492_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1473488_1474175_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1474161_1475121_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1475162_1477523_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1477522_1478155_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1478256_1479597_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1479643_1480999_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1481124_1481769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1481713_1482031_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1482303_1482819_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1482912_1483074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1483089_1483845_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1484183_1484390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1484397_1485057_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1485351_1487556_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1487666_1488890_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1489012_1489987_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1490054_1491248_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1491262_1492063_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1492059_1493916_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1493912_1494518_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1494536_1495922_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1496647_1497874_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1497962_1498745_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1498843_1499794_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1499820_1500594_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1500605_1501847_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1503628_1504579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	1548504	1616591	4108515	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1548504_1548993_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1549110_1549689_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1549794_1550163_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1550261_1551212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1551218_1552331_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1553017_1554220_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1554255_1554402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1554423_1557084_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1557096_1560501_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1561168_1563394_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1563440_1563767_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1563817_1564426_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1564524_1565475_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1565544_1566309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1566305_1566905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1567008_1567860_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1567919_1568546_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1568542_1569493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1569591_1570704_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1570693_1571695_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1571800_1573312_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1573308_1574613_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1574724_1575285_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1575552_1576107_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1576562_1576778_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1577032_1579630_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1579626_1580814_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1581473_1582088_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1582176_1583304_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1583315_1584221_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585113_1586064_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1586245_1586998_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1587066_1587726_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1587722_1588451_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1588463_1590743_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1590767_1590971_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1591012_1591645_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1591780_1592698_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1592694_1593408_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1593645_1594416_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1594420_1595020_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1595264_1596755_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1596813_1597098_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1597235_1597391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1597663_1598590_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1598726_1599467_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1599633_1601010_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1601191_1602097_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1603748_1605551_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1605677_1606319_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1606417_1607368_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1607389_1608610_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1608795_1610208_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1610271_1611339_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1611338_1612826_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1612835_1613780_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1613939_1614638_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1614715_1615621_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1615640_1616591_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	1652540	1708131	4108515	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1652540_1653491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1653549_1654323_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1654315_1655872_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1655868_1656819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1658145_1658748_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1658987_1659689_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1659682_1660465_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1660649_1661600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1661698_1662436_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1662625_1663384_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1663430_1664420_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1664597_1665566_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1667105_1668074_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1668082_1669024_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1669497_1670508_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1670498_1672013_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1672009_1673356_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1673358_1674393_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1674442_1676068_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1676620_1677571_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1677675_1678623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1678676_1680491_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1680483_1681158_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1681287_1684362_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1684375_1684675_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1684989_1685613_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1685856_1686726_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1686703_1687648_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1687733_1688660_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1688772_1689552_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1689542_1690739_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1690769_1691720_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1691941_1692631_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1692695_1693451_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1693502_1694495_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1694504_1695458_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1695573_1696536_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1697937_1698366_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1698362_1699313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1699606_1700344_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1700767_1701955_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1701958_1702339_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1704058_1705030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1705043_1705757_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1705761_1706679_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1706785_1707082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1707180_1708131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	1940895	2010547	4108515	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1940895_1943553_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1943630_1944833_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1944829_1945342_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1945464_1945902_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1946178_1947129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1947227_1948178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1948431_1950237_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1950350_1950518_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1950581_1950818_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1951186_1952386_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1953901_1954852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1955303_1956305_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1956477_1957335_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1957331_1958594_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1958694_1959069_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1959141_1960329_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1960413_1961184_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1961297_1962062_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1962012_1963314_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1963310_1964117_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1965861_1966833_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1966989_1967502_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1967660_1968635_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1969635_1970430_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1970455_1971262_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1971372_1971963_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1971973_1973152_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1973254_1973629_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1973881_1975213_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1975279_1978510_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1980000_1980747_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1980831_1981293_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1981330_1982389_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1982351_1984181_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1984220_1984793_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1986217_1987039_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1987357_1988680_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1989039_1989675_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1989634_1990585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1991455_1992328_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1992405_1993545_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1993903_1995160_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1995165_1995693_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1995697_1996516_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1996515_1997238_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1997259_1997574_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1997591_1998740_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1998770_1999646_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1999642_2000962_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2001034_2002231_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2002241_2003729_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2006323_2007223_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2007360_2008326_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2008424_2009375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2009596_2010547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2022043	2071439	4108515	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2022043_2022994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2024131_2024428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2024602_2025955_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2026097_2027114_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2029093_2030107_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2030193_2031099_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2031255_2031600_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2031757_2032216_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2032229_2034446_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2034442_2035504_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2035532_2036507_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2036458_2037277_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2037289_2037898_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2038072_2038468_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2038486_2039926_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2039954_2040302_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2040320_2041271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2041923_2042874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2042957_2044775_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2044848_2045496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2045508_2046438_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2046607_2047072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2047319_2048000_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2048048_2049740_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2049755_2050307_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2050303_2050675_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2050787_2051624_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2051634_2052159_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2052256_2052436_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2052565_2053540_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2053670_2054027_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2054016_2054892_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2054990_2055875_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2055896_2057192_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2058140_2058791_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2058878_2060399_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2060656_2062522_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2063567_2064518_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2064535_2064676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2065490_2065850_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2065837_2067274_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2067270_2067924_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2067920_2069114_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2069217_2070492_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2070488_2071439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2082643	2123334	4108515	transposase,tRNA,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2082643_2083594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2083692_2084643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2084602_2085016_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2085300_2085600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2086009_2088292_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2088757_2088952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2088977_2091008_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2091027_2091240_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2091517_2092057_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2092170_2093466_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2093542_2094700_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2094883_2095783_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2095801_2097106_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2097071_2098178_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2098265_2098502_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2098640_2099711_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2099714_2101070_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2101096_2102257_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2102259_2102898_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2102899_2104186_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2104244_2105540_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2105546_2106053_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2106049_2107198_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2107225_2107651_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2107973_2110856_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2110948_2111704_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2112469_2113819_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2113917_2114868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2114966_2115917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2115990_2116464_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2116489_2117698_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2117694_2118468_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2118467_2119091_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2119256_2119517_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2119820_2120402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2120468_2120723_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2120709_2123334_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 19
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2151117	2216666	4108515	transposase,tRNA,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2151117_2152068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2152268_2153078_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2153202_2154153_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2154149_2155043_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2155167_2155362_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2155361_2155703_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2155712_2157575_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2157704_2158217_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2158219_2158543_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2158544_2158955_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2158992_2160204_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2160221_2160734_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2160949_2161441_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2161693_2163730_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2163807_2165010_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2165138_2165789_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_010929591.1|2167346_2168297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2168867_2169080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2169097_2169829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2169863_2170505_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2170497_2171166_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2173378_2174155_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2174176_2175334_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2175330_2175762_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2175758_2176562_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2176575_2176977_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2177043_2178015_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2178080_2179304_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2179531_2180482_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2180605_2183059_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2183247_2184552_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2184656_2185310_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2185312_2186623_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2186819_2187380_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2187491_2187692_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2188037_2188604_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2188687_2188891_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2189197_2189518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2189559_2189841_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2189915_2191172_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2191554_2191884_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2193454_2194276_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2194275_2195415_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2195421_2196318_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2196314_2198240_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2198599_2201212_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2201264_2203565_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2203561_2204770_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2205031_2205406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2205402_2206353_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2206451_2208446_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2208505_2209471_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2209460_2212322_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2212324_2212831_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2212935_2214144_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2214145_2215084_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2215245_2215719_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2215715_2216666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2510313	2568557	4108515	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2510313_2511264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2511743_2512400_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2512414_2514082_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2514084_2514714_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2514925_2516020_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2516164_2516977_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2516980_2518684_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2518734_2519865_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2520051_2521128_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2521209_2521860_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2521874_2523278_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2523561_2524380_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2524376_2525081_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2525980_2527096_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2527129_2527504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2527526_2528684_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2528696_2528930_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2529564_2532534_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2532548_2532758_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2532909_2533539_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2533535_2535626_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2535649_2536330_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2536326_2536887_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2536893_2537991_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2538143_2538737_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2538733_2540026_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2540039_2540582_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2540591_2541428_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2541461_2542523_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2542564_2543617_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2543632_2543935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2544076_2545027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2545044_2545209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2545205_2546900_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2546896_2547982_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2548029_2548929_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2548939_2549584_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2550605_2553848_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2553858_2555013_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2555239_2556202_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2556300_2557251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2557349_2558300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2558309_2558999_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2559058_2559496_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2559541_2560435_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2560482_2561655_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2561651_2562806_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2563002_2563353_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2563342_2563777_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2563793_2564744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2564891_2565359_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2565339_2566497_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2566562_2567489_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2567606_2568557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2610837	2677337	4108515	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2610837_2611788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2612157_2612730_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2612732_2613743_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2613735_2614236_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2614246_2614588_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2614599_2615391_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2615407_2615677_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2615699_2616488_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2616534_2617551_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2617767_2619210_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2619388_2621008_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2621128_2622949_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2623027_2624560_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2624593_2626240_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2626309_2627332_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2627349_2628483_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2628485_2629175_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2629174_2629960_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2630003_2630768_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2630806_2632228_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2632293_2632998_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2633045_2633465_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2633477_2633885_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2634068_2634779_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2634905_2635196_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2635213_2635696_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2640201_2641356_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2641661_2642678_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2642924_2643713_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2643779_2644460_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2644456_2645227_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2645325_2646276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2646331_2647249_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2647259_2648438_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2648457_2649453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2651041_2651650_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2651637_2652678_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2652695_2653658_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2653654_2654848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2654844_2655642_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2655667_2656654_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2656672_2658712_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2658913_2659594_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2659607_2660519_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2660515_2661094_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2661232_2662138_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2662145_2665565_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2665552_2668153_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2669108_2669741_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2670134_2670893_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2670889_2672092_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2672279_2673230_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2674137_2675283_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2675269_2676025_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2676141_2676321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2676386_2677337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2839902	2916456	4108515	transposase,tRNA	Oenococcus_phage(33.33%)	56	NA	NA
WP_023853639.1|2839902_2840853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2840951_2841902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852977.1|2841919_2842108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930231.1|2842104_2843094_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930230.1|2843177_2843531_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2843608_2844217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2845890_2846469_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2846493_2847447_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2847486_2848404_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2848525_2849452_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2849459_2850206_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2850532_2851474_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2851700_2853398_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2853832_2855254_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2855407_2856187_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2856311_2857190_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2857295_2858420_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2858465_2859428_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2859420_2860275_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2860382_2860793_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2860789_2861740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2861838_2862720_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2862797_2864177_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2864215_2865061_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2865076_2865421_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2865423_2865960_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2866132_2866708_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2866810_2867548_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2867615_2869253_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2869360_2870116_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2870103_2871066_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2871167_2871968_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2872029_2874105_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2874269_2876645_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2876725_2878081_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2879559_2880282_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2880336_2881320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2881449_2882400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2882396_2883299_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2883386_2884145_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2884157_2885249_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2885346_2886774_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2887003_2888218_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2888263_2891134_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2893544_2894033_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2894158_2896855_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2897009_2899292_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2899465_2900089_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2900187_2901138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2901184_2901739_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2901806_2902652_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2902721_2903690_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2903689_2904553_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2907385_2911312_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2912047_2915278_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_005013747.1|2915505_2916456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2924105	2983999	4108515	holin,transposase,tRNA,protease	Catovirus(22.22%)	52	NA	NA
WP_010930190.1|2924105_2925626_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2925668_2925971_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2925967_2926600_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2926678_2928544_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2928540_2929335_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2929363_2930479_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2931383_2932262_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2932261_2933086_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2933253_2934204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2934416_2937266_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2937247_2937976_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2938116_2939580_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2939576_2939948_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2939965_2941279_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2941315_2941774_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2941728_2941869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2941886_2942837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2942833_2943847_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2943986_2944973_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2945331_2946039_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2946619_2947570_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2947721_2948324_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2948342_2948975_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2949019_2949271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2949212_2951099_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2951117_2951960_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2951956_2953315_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2953535_2954330_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2954560_2956054_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2956289_2958371_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2958565_2959606_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2959740_2960757_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2960778_2961636_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2961680_2962457_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|2962669_2962807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2962824_2963775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2963801_2964266_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2965472_2967761_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2967877_2968750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2968792_2969947_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2969981_2970812_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2970895_2972440_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2972482_2972842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2972843_2973257_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2973297_2973615_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2973699_2974416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2974679_2976101_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2976167_2978915_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2979247_2980264_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2980599_2981241_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2981331_2982768_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2982925_2983999_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
>prophage 24
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	2988885	3124044	4108515	transposase,tRNA	uncultured_Caudovirales_phage(10.0%)	117	NA	NA
WP_010931363.1|2988885_2989902_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2990839_2992267_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2992263_2993286_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2993275_2993749_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2993889_2994777_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2994773_2996417_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2996413_2997463_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2998251_2999268_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2999367_3000000_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3000008_3000398_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3000450_3001503_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3002366_3004073_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3004146_3004647_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3004661_3006719_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3006745_3007039_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3007140_3008088_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3008100_3008976_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3009096_3009657_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3009691_3010015_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3010450_3011188_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3011486_3012437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3012680_3012944_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3013017_3013299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3013315_3014176_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3014172_3014508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3014561_3015212_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3016892_3017837_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3017882_3018200_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3018202_3019141_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3019318_3019804_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3019822_3020371_+	DinB family protein	NA	NA	NA	NA	NA
WP_023994624.1|3020402_3020555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853531.1|3020647_3021781_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3021884_3022526_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3022680_3025029_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3025025_3025964_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3025989_3027180_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3027176_3027950_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3027979_3029173_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3029290_3030301_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3030318_3032355_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3032549_3033290_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3033388_3034339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3034381_3035557_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3035778_3037569_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3037581_3039243_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3039255_3041961_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3042253_3044008_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3044004_3044631_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3044627_3045479_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3045554_3047669_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3047855_3048470_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3048615_3048867_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3048936_3050319_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3050315_3053495_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3054302_3055220_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3055271_3056003_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3056062_3056635_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3058143_3059160_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3059297_3060347_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3060451_3061402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3061497_3062223_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3062433_3062814_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3063119_3063992_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3063999_3064380_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3064533_3065808_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3067295_3068204_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3069001_3070066_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3071902_3072904_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3073126_3073768_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3073850_3075677_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3075920_3076850_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3076849_3077599_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3077670_3078585_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3078604_3079750_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3079810_3080722_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3080802_3081753_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3081851_3082436_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3082470_3083460_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3083456_3084398_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3084394_3085615_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3085657_3085972_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3086163_3086523_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3086524_3088240_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3088427_3089099_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3089113_3090442_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3090438_3091338_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3091424_3092510_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3092502_3093636_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3093635_3096317_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3096687_3097269_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3097394_3098120_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3098116_3098794_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3099009_3100191_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3100963_3101146_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3101175_3102126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3102255_3102648_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3102924_3103836_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3103960_3104935_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3104931_3105882_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3105980_3107066_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3107163_3107574_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3108189_3110103_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3110238_3112851_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3112852_3113587_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3113750_3114932_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3114928_3115141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3115137_3116118_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3116163_3116991_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3117140_3118955_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3119009_3119393_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3119389_3120340_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3120452_3120704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3121209_3122328_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3122447_3122660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3122819_3123041_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3123093_3124044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	3144791	3198922	4108515	transposase,holin	Ostreococcus_lucimarinus_virus(25.0%)	41	NA	NA
WP_005012067.1|3144791_3145742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3146905_3148621_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3148631_3149123_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3149195_3150212_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3150379_3151159_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3151177_3151705_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3151998_3152268_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3152358_3154518_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3154638_3155358_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3155354_3156305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3156445_3157663_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3157656_3158268_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3158901_3159879_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3160022_3160769_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3160790_3161237_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3162024_3164256_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3164278_3165079_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3165360_3166593_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3166703_3167693_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3167723_3169112_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3170710_3171694_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3171890_3172907_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3173103_3173928_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3174005_3174929_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3175099_3176251_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3176254_3177286_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|3177414_3178386_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3178410_3180495_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3180561_3181554_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3181662_3182997_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3183022_3185035_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3185031_3187080_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3187183_3187831_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3187971_3188466_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3188509_3189181_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3189195_3190689_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3190685_3193799_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3193811_3194918_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3195041_3195710_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3195930_3196881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3196963_3198922_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
>prophage 26
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	3237365	3310527	4108515	transposase	Klosneuvirus(16.67%)	57	NA	NA
WP_041337087.1|3237365_3238316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3238312_3239332_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3239341_3242050_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3242197_3242854_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3242952_3243903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3244050_3244944_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3245143_3246838_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3246872_3247799_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3247867_3248965_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3248983_3249847_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3249858_3250641_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3250637_3251756_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3251752_3253285_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3253325_3254333_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3254477_3255200_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3255215_3256238_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3256554_3257289_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3257373_3259119_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3259115_3259868_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3259912_3260869_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3260957_3261524_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3261531_3262392_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3262421_3263150_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3263181_3263865_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3264702_3265617_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3265681_3266590_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3266680_3268105_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3268106_3269429_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3269425_3271564_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3271641_3276762_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3276862_3277171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3277240_3277798_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3277813_3279295_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3281465_3282803_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3282837_3284835_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3284852_3286901_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3287031_3287898_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3288166_3289132_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3289246_3290395_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3290819_3291131_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3291164_3291425_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3291574_3292708_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3292778_3293915_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3294080_3294875_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3294937_3295381_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3295496_3296447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3296548_3296977_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3297049_3299245_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3299466_3300417_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3300376_3300901_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3301032_3302004_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3302123_3304568_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3304583_3305174_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3305417_3306368_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3306525_3307791_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3307824_3308922_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3309576_3310527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	3321814	3421927	4108515	tRNA,protease,terminase,transposase,tail	uncultured_Caudovirales_phage(14.29%)	108	NA	NA
WP_005012067.1|3321814_3322765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3323496_3323874_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3323858_3324560_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3324703_3325396_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3325395_3326499_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3326608_3328981_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3328977_3330537_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3330561_3331359_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3331390_3332536_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3332640_3334083_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3334085_3335315_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3337452_3338403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3339532_3340090_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3340065_3340416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3340584_3341379_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3341375_3342425_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3342424_3343114_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3343200_3343698_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3343729_3345046_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3345062_3346037_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3346073_3346532_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3346531_3347212_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3347214_3347643_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3347695_3349426_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3349491_3350064_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3350044_3350731_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3351086_3351758_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3352086_3352308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3352307_3352589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3352585_3353101_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3353100_3353652_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3353630_3353873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3353877_3354690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3354689_3354953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3354993_3355191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3355171_3355588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3355592_3359549_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3359541_3359931_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3359927_3360461_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3360528_3360888_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3360897_3363510_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3363535_3363826_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3363843_3364173_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3364182_3364701_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3364955_3365456_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3365463_3365886_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3365882_3366281_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3366277_3366673_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3366672_3366873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3366874_3367357_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3367419_3367671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3368345_3369296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3369724_3370327_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3370449_3370692_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3370697_3371753_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3371781_3373200_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3373202_3374480_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3374466_3374952_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3375591_3376542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3376559_3376781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3376798_3377488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3377480_3377732_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3378286_3378898_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3378969_3379176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3379427_3380378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3380476_3381550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3381717_3382512_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3382551_3383076_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3383068_3384811_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3385020_3385779_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3385781_3386489_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3386505_3387387_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3387397_3388156_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3388124_3388880_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3388949_3390368_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3390389_3391040_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3391173_3391509_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3391597_3392548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3392624_3394445_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3394449_3395523_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3395645_3396614_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3396687_3397599_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3397617_3398190_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3398270_3398819_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3398818_3400408_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3400477_3400717_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3400757_3401783_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3401848_3403030_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3403126_3403579_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3403588_3404929_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3405245_3406283_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3406664_3407024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3407107_3408049_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3408123_3409074_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3409367_3410462_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3410543_3411425_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3411446_3412286_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3412361_3413879_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3413975_3415076_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3415092_3415515_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3415537_3415750_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3415796_3416717_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3416899_3417649_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3417651_3417981_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3418187_3419621_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3419632_3420016_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3420077_3420878_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3420976_3421927_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	3708544	3841470	4108515	transposase,integrase,tRNA	uncultured_Mediterranean_phage(10.34%)	115	3753187:3753204	3797827:3797844
WP_005013747.1|3708544_3709495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929878.1|3709491_3710127_-	LysE family transporter	NA	NA	NA	NA	NA
WP_003818466.1|3710256_3711156_+	LysR family transcriptional regulator ArgP	NA	NA	NA	NA	NA
WP_003807278.1|3711251_3711743_+	copper chaperone PCu(A)C	NA	NA	NA	NA	NA
WP_010929877.1|3711789_3712755_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929876.1|3713888_3715130_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	24.9	1.9e-14
WP_003807287.1|3715243_3716260_+	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	43.8	3.5e-75
WP_010929875.1|3716294_3716771_-	membrane protein	NA	NA	NA	NA	NA
WP_003807291.1|3716913_3717822_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_010929874.1|3717935_3719048_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	35.0	1.9e-21
WP_023853429.1|3719148_3719634_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818477.1|3719770_3721021_+	kynureninase	NA	NA	NA	NA	NA
WP_003807300.1|3721122_3721635_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	43.3	8.5e-22
WP_005013747.1|3721733_3722684_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929873.1|3722749_3723688_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.7	1.4e-09
WP_010929872.1|3723710_3724337_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_003818481.1|3724333_3724990_-	HAD hydrolase-like protein	NA	NA	NA	NA	NA
WP_010929871.1|3724986_3725589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929870.1|3725595_3726183_-	TIGR00730 family Rossman fold protein	NA	A0A2I2L3F0	Orpheovirus	23.3	1.1e-07
WP_010929869.1|3726363_3726933_+	bacterioferritin	NA	NA	NA	NA	NA
WP_003807313.1|3727003_3728323_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_003807315.1|3728429_3728621_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010929868.1|3728872_3730162_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929867.1|3730316_3731312_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807322.1|3731396_3732071_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3732067_3733018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816336.1|3733179_3734421_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	25.2	4.0e-25
WP_010929866.1|3734417_3735362_+	arginase	NA	A0A0N9R043	Chrysochromulina_ericina_virus	33.3	9.5e-27
WP_005012067.1|3735480_3736431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853484.1|3736390_3737320_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807759.1|3737373_3737709_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929865.1|3737753_3738518_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929864.1|3738541_3739282_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929863.1|3739289_3740843_-	acyl--CoA ligase	NA	A0A2K9L3I8	Tupanvirus	22.6	1.5e-13
WP_010929862.1|3740877_3741855_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023853476.1|3742127_3742709_-	ureidoglycolate lyase	NA	NA	NA	NA	NA
WP_094145972.1|3742760_3749663_-	autotransporter BatB	NA	NA	NA	NA	NA
WP_003807750.1|3750109_3750241_-	entericidin A/B family lipoprotein	NA	NA	NA	NA	NA
WP_010929858.1|3750506_3750713_-	DUF3596 domain-containing protein	NA	NA	NA	NA	NA
WP_010929857.1|3751717_3752377_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010929856.1|3752404_3753550_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
3753187:3753204	attL	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_003807743.1|3753690_3754026_+	YegP family protein	NA	NA	NA	NA	NA
WP_010929855.1|3754100_3754961_-	hypothetical protein	NA	A0A2C9D0H9	Yersinia_phage	53.6	1.7e-51
WP_010929854.1|3755224_3755926_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019248860.1|3756095_3756491_+	RidA family protein	NA	NA	NA	NA	NA
WP_005012067.1|3756600_3757551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929852.1|3757561_3758203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926414.1|3758369_3758612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929851.1|3758710_3759661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929850.1|3759696_3760164_+	hypothetical protein	NA	Q3HQX1	Burkholderia_phage	71.3	2.1e-43
WP_010926411.1|3760397_3760775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926410.1|3760771_3760954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929849.1|3760957_3761944_+	recombinase RecT	NA	H9C0R8	Aeromonas_phage	57.3	2.0e-67
WP_010929848.1|3761940_3762588_+	YqaJ viral recombinase family protein	NA	A0A0U2BXF3	Paracoccus_phage	41.4	2.0e-31
WP_010929847.1|3762645_3763173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247983.1|3763209_3764394_+	hypothetical protein	NA	A0A291L9X3	Bordetella_phage	37.8	1.5e-24
WP_010929845.1|3764404_3764746_+	hypothetical protein	NA	A0A0H5ARN8	Pseudomonas_phage	45.3	1.0e-10
WP_010926403.1|3764858_3765059_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929843.1|3765055_3766045_-|integrase	site-specific integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	44.4	4.4e-75
WP_010929841.1|3767531_3769502_-	type III secretion system effector BopC	NA	NA	NA	NA	NA
WP_003814626.1|3769743_3770142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929840.1|3770150_3771074_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3771531_3772482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927254.1|3772712_3774404_-	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_003816027.1|3774452_3774725_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_003816026.1|3774721_3775093_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816025.1|3775188_3775323_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_010929554.1|3775728_3777138_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_010929839.1|3777140_3778250_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929838.1|3778344_3780798_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_023853625.1|3780916_3781708_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929836.1|3781827_3783255_+	amidase	NA	NA	NA	NA	NA
WP_010929835.1|3783293_3784265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929834.1|3784683_3785847_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929833.1|3785934_3786780_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3788336_3789287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818201.1|3789841_3790216_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929807.1|3790290_3791349_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005012067.1|3791372_3792323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929808.1|3795204_3796374_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_003815953.1|3796474_3798082_+	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
3797827:3797844	attR	CAGCGTGCTGGCCACCGT	NA	NA	NA	NA
WP_010929810.1|3798128_3800150_+	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815955.1|3800178_3800424_-	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_004565905.1|3800437_3801628_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_010929811.1|3801823_3802789_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929812.1|3802811_3803951_-	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929813.1|3804162_3805125_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929814.1|3805248_3807273_+	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929815.1|3807469_3809713_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_003815964.1|3809991_3810450_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929816.1|3811377_3813999_-	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_010929817.1|3814062_3816690_+	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929818.1|3816841_3817906_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699616.1|3817905_3818676_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929819.1|3818684_3819518_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818225.1|3819530_3820310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|3820383_3821817_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929821.1|3821844_3822603_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929822.1|3822658_3824509_-	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929823.1|3824602_3825079_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853391.1|3825095_3826016_-	bestrophin	NA	NA	NA	NA	NA
WP_003818232.1|3826122_3826623_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_010929826.1|3826996_3827689_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_162268689.1|3827803_3827980_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3827997_3828948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931556.1|3828944_3832718_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010931557.1|3833054_3834944_+	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931558.1|3834955_3835849_+	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931559.1|3835952_3836750_+	thiazole synthase	NA	NA	NA	NA	NA
WP_010931560.1|3836746_3837598_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003817656.1|3837659_3838340_+	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_019248789.1|3838376_3838703_+	TolC family protein	NA	NA	NA	NA	NA
WP_019247190.1|3838703_3839663_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_003815102.1|3839683_3840172_-	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_010931561.1|3840453_3841470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011689	Bordetella pertussis strain D175 chromosome, complete genome	4108515	4030686	4084118	4108515	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4030686_4031637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031806_4033033_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033232_4034099_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034091_4035054_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035154_4036105_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036203_4037154_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037252_4038203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038199_4039693_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039689_4042797_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042793_4045862_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045858_4047109_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4047289_4048051_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4048083_4048734_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4048736_4049576_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049816_4050560_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4050642_4050990_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051087_4051930_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051974_4052862_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052888_4053077_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053174_4054632_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054618_4056145_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056163_4056631_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4056630_4057653_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4057773_4058493_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4058568_4059669_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059670_4060861_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060980_4061997_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062315_4062987_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062983_4063892_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064103_4064751_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4068602_4069679_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069689_4070499_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070588_4071362_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4071362_4071527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4071544_4072495_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4072383_4073406_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4073395_4074550_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4074589_4076002_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4076126_4076993_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4076994_4077819_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4077815_4078577_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4078657_4079344_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4079517_4080525_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4080521_4081301_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4081358_4082621_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4083167_4084118_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
