The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	27282	70036	4103249	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	77634	136108	4103249	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	164894	225405	4103249	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	233337	287974	4103249	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	556359	615659	4103249	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|556359_557310_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558633_559410_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559444_561217_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561218_562121_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562245_562605_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562636_563599_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563697_564648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564660_565596_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565655_566495_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566491_567661_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567657_568947_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568989_569364_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569478_570207_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570214_570919_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571182_572703_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572758_573322_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573340_574372_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574368_575157_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575332_576322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578078_579029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580251_581154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581155_582010_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582056_583166_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583176_583695_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583724_584357_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584428_585088_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585084_586224_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586573_587446_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587601_588339_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588341_589973_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931368.1|590068_591058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591054_591765_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591860_592877_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593148_593775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593830_594958_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594963_600681_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601248_602193_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602381_603317_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603434_605006_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605085_606294_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606791_607709_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610069_610291_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610621_611638_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611722_611974_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611977_612793_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612905_613784_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613895_615659_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	621814	675555	4103249	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621814_622765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622860_623832_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623836_624517_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624654_625047_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625154_626171_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626410_627196_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627290_628700_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628710_629511_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629531_630302_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630344_630812_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630808_631759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633707_634586_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635512_638491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638844_639795_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639791_640880_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640915_641779_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642918_643308_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643311_644094_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644127_644913_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645188_646328_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646324_647116_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647112_647862_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647858_648731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648730_649732_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649728_650892_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650917_651601_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651554_652889_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652881_653976_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654742_655693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657633_658893_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658889_660428_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660424_661621_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661617_662994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663005_664022_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664090_665326_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665426_666221_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666590_666998_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667415_667688_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667857_668082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668269_669124_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669224_669527_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669571_670189_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670205_670514_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670510_672226_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672228_672846_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672946_673531_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673555_674200_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674604_675555_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	724493	764443	4103249	integrase,tRNA,protease,transposase	Pseudomonas_phage(33.33%)	29	721741:721759	741629:741647
721741:721759	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724493_725090_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725086_725869_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725941_727033_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727312_728440_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728781_729828_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730338_733095_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733096_736048_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736063_737275_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737271_737472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737458_738409_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738425_738920_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738923_739181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739724_740636_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740717_741002_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741785_742736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741629:741647	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743154_745719_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745763_747617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747949_749521_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750962_751913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751998_752739_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752965_753913_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|755300_756251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|756444_757260_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757392_758832_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758845_759187_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759241_760897_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761048_762059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762191_762965_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763492_764443_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	774370	821988	4103249	tRNA,protease,holin,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|774370_775321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775459_776212_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|776486_778175_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|778194_779454_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779468_780563_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|780559_782623_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|782698_783379_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783656_785030_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785031_786051_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786114_787086_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787150_788101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788199_789042_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789041_789377_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789447_790866_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791145_792186_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792265_792517_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792627_793791_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794074_794929_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794925_795816_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795858_796770_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796796_797489_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797503_798484_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798496_800638_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800686_801655_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801645_802314_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802274_803210_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803206_804103_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804099_804822_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804812_804977_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805150_805654_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805930_807046_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807188_807653_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807800_808340_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808361_809696_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809709_810015_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810439_811021_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_010931070.1|811102_812053_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812151_813102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813542_814448_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814503_816111_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816364_817870_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817884_818349_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818638_819589_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819751_820282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820281_820593_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821037_821988_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	997848	1108335	4103249	tRNA,transposase	Bacillus_virus(25.0%)	100	NA	NA
WP_003813026.1|997848_998964_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|999064_999883_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|999980_1000592_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1000751_1002128_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1002190_1002649_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1002733_1003429_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1003490_1003772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1004334_1005087_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1005131_1006208_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1006204_1007155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1007257_1007920_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1008014_1008185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1008537_1009539_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1009541_1010738_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1010758_1011562_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1011642_1011939_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1011969_1012533_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1012573_1013431_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1013438_1014188_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1014209_1015082_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1015110_1015890_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1015923_1016721_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1019375_1019768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1019761_1020622_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1020625_1021588_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1022364_1023054_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1023914_1024865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1025214_1026084_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1026154_1026850_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1026839_1027349_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1027345_1028566_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1028513_1029416_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1030302_1031589_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1031627_1033001_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1033039_1033741_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1034039_1035029_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1035129_1035591_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1035606_1036155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1036296_1037772_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1037877_1038969_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1038972_1039755_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1039764_1040553_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1041678_1042113_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1042109_1043120_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1043163_1044090_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1044376_1044745_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1044961_1045912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1045956_1048383_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1048431_1049124_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1049196_1050396_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1050413_1051319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1051434_1052364_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1052389_1053736_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1053748_1054513_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1054526_1055309_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1055501_1056452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1056513_1057623_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1058135_1058972_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1059098_1060007_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1060003_1060954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1061339_1061882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1062917_1063868_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1064109_1064478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1064523_1065648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1066782_1067523_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1067626_1068247_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1068350_1069301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1069297_1071406_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1071550_1072210_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1072241_1072706_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1072981_1073167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1073218_1073971_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1073977_1075240_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1075281_1076520_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1077597_1078725_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1078735_1079563_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1079549_1080416_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1081782_1082187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1082278_1083229_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1083598_1084510_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1084524_1085235_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1085231_1086476_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1086477_1086912_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1086940_1087246_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1087344_1088295_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1088351_1089500_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1089580_1090531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1091062_1091860_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1091907_1092561_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1092517_1093606_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1093770_1095996_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1098273_1099170_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1099290_1100241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931141.1|1100237_1101929_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_010931140.1|1101990_1103187_+	amidohydrolase	NA	NA	NA	NA	NA
WP_003814552.1|1103200_1104079_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929220.1|1104185_1105232_+	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814554.1|1105295_1105706_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814555.1|1105716_1107189_+	magnesium transporter	NA	NA	NA	NA	NA
WP_005012067.1|1107384_1108335_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	1130627	1201598	4103249	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1130627_1131578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1131634_1132747_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1135130_1136081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1136671_1137448_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1137565_1137829_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1137929_1138934_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1139134_1140736_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1140761_1141520_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1141611_1142268_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1142358_1143123_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1143132_1143321_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1143376_1144420_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1144416_1144830_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1144826_1145447_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1145727_1146678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1146845_1148237_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1148309_1148888_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1149004_1150402_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1150517_1151723_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1151822_1152341_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1152435_1152681_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1152908_1153223_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1153321_1158502_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1158498_1160667_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1160722_1163038_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1163042_1164362_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1164380_1166054_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1166058_1166727_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1166883_1170705_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1171035_1171986_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1172007_1173153_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1173301_1174231_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1174227_1175316_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1175312_1176116_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1176112_1176844_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1176901_1178191_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1178287_1178890_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1183443_1183782_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1184489_1184756_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1186462_1187413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1187409_1188741_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1190001_1192002_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1191994_1192636_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1192632_1193040_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1193036_1193837_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1193911_1194616_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1194647_1195442_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1195438_1196389_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1196487_1197438_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1197536_1197971_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1198053_1200390_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1200581_1201598_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	1248992	1329867	4103249	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1248992_1249943_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1249939_1250890_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1251150_1252179_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1252258_1253557_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1253553_1254135_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1254447_1258494_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1258734_1266396_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1266392_1267343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1268482_1268956_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1269095_1269716_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1269851_1270652_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1270706_1271798_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1271819_1272263_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1272291_1272924_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1273034_1273451_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1273443_1274136_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1274242_1274617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1274693_1275503_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1275598_1276543_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1276581_1277553_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1277643_1278081_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1278139_1279021_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1280024_1280885_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1280917_1282300_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1282296_1283316_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1283688_1284183_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1284190_1284931_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1285011_1286616_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1286655_1287444_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1287569_1289735_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1290615_1291428_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1291440_1291749_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1291866_1293597_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1293598_1294801_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1294873_1295542_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1295663_1296131_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1296266_1297649_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1297645_1298770_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1298766_1301403_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1301818_1302769_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1306515_1307127_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1307349_1308810_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1308906_1310499_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1310852_1311110_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1311111_1312452_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1312547_1313237_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1313249_1314680_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1316404_1317226_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1317236_1318808_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1318836_1319814_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1319840_1320644_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1320640_1321435_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1321442_1322678_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1322691_1323105_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|1323460_1323733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1323854_1324805_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1325426_1327154_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1327265_1328624_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1328916_1329867_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	1449262	1501415	4103249	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1449262_1450213_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1450379_1450733_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1450745_1451108_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1451149_1451575_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1451777_1453034_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1453232_1454213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1454362_1455604_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1455702_1456653_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1456661_1457357_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1460178_1460778_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1460788_1462954_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1462977_1464762_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1464761_1464851_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1465545_1465818_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1465817_1467884_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1467880_1468831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1468929_1469880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1469995_1470328_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1470324_1471011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1470997_1471957_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1471989_1474359_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1474358_1474991_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1475092_1476433_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1476479_1477835_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1478125_1478362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1478549_1478867_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1479139_1479655_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1479925_1480681_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1481019_1481226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1481233_1481893_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1482187_1484392_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1484502_1485726_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1485848_1486823_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1486890_1488084_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1488098_1488899_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1488895_1490752_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1490748_1491354_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1491372_1492758_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1493483_1494710_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1494798_1495581_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1495679_1496630_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1496656_1497430_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1497441_1498683_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1500464_1501415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	1545340	1613427	4103249	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1545340_1545829_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1545946_1546525_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1546630_1546999_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1547097_1548048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1548054_1549167_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1549853_1551056_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1551259_1553920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1553932_1557337_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1558004_1560230_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1560276_1560603_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1560653_1561262_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1561360_1562311_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1562380_1563145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1563141_1563678_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1563844_1564696_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1564755_1565382_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1565378_1566329_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1566427_1567540_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1567529_1568531_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1568636_1570148_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1570144_1571449_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1571560_1572121_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1572388_1572943_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1573398_1573614_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1573868_1576466_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1576462_1577650_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1578309_1578924_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1579012_1580134_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1580151_1581057_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1581949_1582900_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1583081_1583834_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1583902_1584562_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1584558_1585287_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1585299_1587579_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1587603_1587807_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1587848_1588481_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1588616_1589534_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1589530_1590244_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1590481_1591252_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1591256_1591856_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1592100_1593591_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1593649_1593934_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1594499_1595426_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1595562_1596303_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1596469_1597846_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1598027_1598933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1600584_1602387_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1602504_1603155_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1603253_1604204_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1604225_1605446_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1605631_1607044_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1607107_1608175_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1608174_1609662_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1609671_1610616_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1610775_1611474_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1611551_1612457_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1612476_1613427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	1649376	1704967	4103249	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1649376_1650327_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1650385_1651159_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1651151_1652708_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1652704_1653655_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1654981_1655584_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1655823_1656525_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1656518_1657301_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1657485_1658436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1658534_1659272_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1659461_1660220_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1660266_1661256_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1661433_1662402_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1663941_1664910_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1664918_1665860_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1666333_1667344_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1667334_1668849_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1668845_1670192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1670194_1671229_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1671278_1672904_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1673456_1674407_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1674511_1675459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1675512_1677327_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1677319_1677994_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1678123_1681198_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1681211_1681511_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1681825_1682449_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1682692_1683562_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1683539_1684484_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1684569_1685496_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1685608_1686388_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1686378_1687575_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1687605_1688556_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1688777_1689467_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1689531_1690287_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1690338_1691331_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1691340_1692294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1692409_1693372_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1694773_1695202_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1695198_1696149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1696442_1697165_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1697603_1698791_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1698794_1699145_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1700894_1701866_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1701879_1702593_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1702597_1703515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1703621_1703918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1704016_1704967_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	1949688	2022901	4103249	transposase	Bacillus_virus(20.0%)	60	NA	NA
WP_010929591.1|1949688_1950639_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1951090_1952092_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952264_1953122_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953118_1954381_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954481_1954856_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1954928_1956116_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956200_1956971_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957084_1957849_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957799_1959101_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1959097_1959904_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1961648_1962620_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962776_1963289_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963447_1964422_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965422_1966217_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966242_1967049_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967159_1967750_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967760_1968939_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1969041_1969416_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969668_1971000_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971066_1974297_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975787_1976534_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976618_1977080_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977117_1978176_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978138_1979968_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1980007_1980580_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1982004_1982826_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983144_1984467_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984826_1985462_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985421_1986372_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987242_1988115_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988192_1989332_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989690_1990947_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1990952_1991480_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991484_1992303_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992302_1993025_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1993046_1993361_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993378_1994527_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994557_1995433_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995429_1996749_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996821_1998018_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1998028_1999516_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002110_2003010_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003147_2004113_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004211_2005162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005383_2006334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812024.1|2006330_2006633_-	SelT/SelW/SelH family protein	NA	NA	NA	NA	NA
WP_003812026.1|2006792_2007197_+	group III truncated hemoglobin	NA	NA	NA	NA	NA
WP_010930743.1|2007189_2008416_+	NnrS family protein	NA	NA	NA	NA	NA
WP_003812030.1|2008412_2008859_+	membrane protein	NA	NA	NA	NA	NA
WP_003812032.1|2008928_2009711_+	exodeoxyribonuclease III	NA	NA	NA	NA	NA
WP_010930744.1|2009752_2011258_+	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247851.1|2011543_2012377_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930745.1|2013814_2014636_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930746.1|2014654_2015509_-	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_003812044.1|2015512_2016484_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247855.1|2017168_2017345_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|2017830_2018781_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2019918_2020215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2020389_2021742_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2021884_2022901_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	2036107	2080427	4103249	transposase	Bacillus_phage(25.0%)	44	NA	NA
WP_010929577.1|2036107_2037058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2037710_2038661_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2038744_2040562_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2040635_2041283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2041295_2042225_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2042394_2042859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2043106_2043787_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2043835_2045527_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2045542_2046094_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2046090_2046462_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2046574_2047411_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2047421_2047946_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2048043_2048223_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2048352_2049327_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2049454_2049811_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2049800_2050676_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2050774_2051659_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2051680_2052976_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2053924_2054575_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2054662_2056183_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2056440_2058306_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2059351_2060302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2060319_2060460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2061274_2061634_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2061621_2063058_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2063054_2063708_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2063704_2064898_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2065001_2066276_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2066272_2067223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930774.1|2067389_2068364_+	membrane protein	NA	NA	NA	NA	NA
WP_003810379.1|2068360_2068504_+	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_003810383.1|2070125_2070788_+	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003818560.1|2070790_2070967_+	cytochrome oxidase	NA	NA	NA	NA	NA
WP_010930775.1|2070963_2071902_+	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_010930776.1|2071993_2073484_+	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930777.1|2073569_2073722_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930778.1|2073735_2073975_+	membrane protein	NA	NA	NA	NA	NA
WP_010930779.1|2074070_2074814_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_019248115.1|2074822_2075347_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930781.1|2075445_2076369_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_003810400.1|2076365_2077127_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930782.1|2077142_2078228_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005013747.1|2078427_2079378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2079476_2080427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	2145852	2211401	4103249	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2145852_2146803_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2147003_2147813_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2147937_2148888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2148884_2149778_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2149902_2150097_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2150096_2150438_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2150447_2152310_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2152439_2152952_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2152954_2153278_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2153279_2153690_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2153727_2154939_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2154956_2155469_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2155684_2156176_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2156428_2158465_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2158542_2159745_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2159873_2160524_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2162081_2163032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2163602_2163815_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2163832_2164564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2164598_2165240_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2165232_2165901_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2168113_2168890_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2168911_2170069_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2170065_2170497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2170493_2171291_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2171310_2171712_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2171778_2172750_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2172815_2174039_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2174266_2175217_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2175340_2177794_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2177982_2179287_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2179391_2180045_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2180047_2181358_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2181536_2182115_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2182226_2182427_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2182772_2183339_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2183422_2183626_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2183932_2184253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2184294_2184576_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2184650_2185907_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2186289_2186619_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2188189_2189011_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2189010_2190150_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2190156_2191053_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2191067_2192975_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2193334_2195947_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2195999_2198300_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2198296_2199505_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2199766_2200141_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2200137_2201088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2201186_2203181_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2203240_2204206_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2204195_2207057_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2207059_2207566_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2207670_2208879_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2208880_2209819_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2209980_2210454_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2210450_2211401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	2505048	2563292	4103249	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2505048_2505999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2506478_2507135_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2507149_2508817_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2508819_2509449_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2509660_2510755_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2510899_2511712_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2511715_2513299_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2513469_2514600_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2514786_2515863_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2515944_2516595_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2516609_2518013_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2518296_2519115_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2519111_2519816_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2520715_2521831_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2521864_2522239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2522261_2523419_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2523431_2523665_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2524299_2527269_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2527283_2527493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2527644_2528274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2528270_2530328_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2530384_2531065_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2531061_2531622_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2531628_2532726_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2532878_2533472_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2533468_2534761_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2534774_2535317_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2535326_2536163_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2536196_2537258_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2537299_2538352_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2538367_2538670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2538811_2539762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2539940_2541635_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2541631_2542717_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2542764_2543664_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2543674_2544319_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2545340_2548583_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2548593_2549748_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2549974_2550937_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2551035_2551986_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2552084_2553035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2553044_2553734_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2553793_2554231_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2554276_2555170_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2555217_2556390_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2556386_2557541_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2557737_2558088_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2558077_2558512_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2558528_2559479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2559626_2560094_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2560074_2561232_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2561297_2562224_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2562341_2563292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	2605572	2672072	4103249	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2605572_2606523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2606892_2607465_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2607467_2608478_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2608470_2608971_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2608981_2609323_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2609391_2610126_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2610142_2610412_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2610434_2611223_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2611269_2612286_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2612502_2613945_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2614123_2615743_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2615863_2617684_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2617762_2619295_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2619328_2620975_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2621044_2622067_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2622084_2623218_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2623220_2623910_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2623909_2624695_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2624738_2625503_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2625541_2626963_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2627028_2627733_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2627780_2628200_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2628212_2628620_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2628803_2629514_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2629640_2629931_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2629948_2630431_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2634936_2636091_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2636396_2637413_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2637659_2638448_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2638514_2639195_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2639191_2639962_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2640060_2641011_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2641066_2641984_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2641994_2643173_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2643192_2644188_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2645776_2646385_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2646372_2647413_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2647430_2648393_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2648389_2649583_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2649579_2650377_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2650402_2651389_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2651407_2653447_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2653648_2654329_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2654342_2655254_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2655250_2655829_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2655967_2656873_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2656880_2660300_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2660287_2662888_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2663843_2664476_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2664869_2665628_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2665624_2666827_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2667014_2667965_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2668872_2670018_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2670004_2670760_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2670876_2671056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2671121_2672072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	2834637	2900221	4103249	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2834637_2835588_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2835686_2836637_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2836839_2837829_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2837912_2838266_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2838343_2838952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2840625_2841204_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2841228_2842182_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2842221_2843139_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2843260_2844187_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2844194_2844941_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2845267_2846209_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2846435_2848133_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2848567_2849989_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2850142_2850922_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2851046_2851925_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2852030_2853155_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2853200_2854163_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2854155_2855010_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2855117_2855528_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2855524_2856475_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2856573_2857455_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2857532_2858912_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2858950_2859796_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2859811_2860126_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2860158_2860695_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2860867_2861443_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2861545_2862283_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2862350_2863988_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2864095_2864851_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2864838_2865801_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2865908_2866703_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2866764_2868840_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2869004_2871380_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2871460_2872816_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2874294_2875017_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2875071_2876055_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2876184_2877135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2877131_2878034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2878121_2878880_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2878892_2879984_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2880081_2881509_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2881738_2882953_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2882998_2885869_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2888279_2888768_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2888893_2891590_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2891744_2894027_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2894191_2894824_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2894922_2895873_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2895919_2896474_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2896541_2897387_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2897456_2898425_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2898424_2900221_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	2917791	2978818	4103249	tRNA,holin,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2917791_2919312_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2919354_2919657_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2919653_2920286_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2920364_2922230_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2922226_2923021_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2923049_2924165_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2925069_2925948_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2925947_2926772_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2926939_2927890_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2928102_2930952_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2930933_2931662_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2931802_2933266_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2933262_2933634_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2933651_2934965_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2935001_2935460_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2935572_2936523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2936519_2937533_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2937672_2938659_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2939017_2939725_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940305_2941256_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2941407_2942010_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2942028_2942661_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2942705_2942957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2942898_2944785_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2944803_2945646_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2945642_2947001_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2947221_2948016_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2948246_2949740_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2949975_2952057_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2952251_2953292_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2953426_2954443_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2954464_2955322_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2955366_2956143_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2956510_2957461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2957487_2957952_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2959158_2961447_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2961563_2962436_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2962478_2963633_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2963667_2964498_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2964581_2966126_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2966168_2966528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2966529_2966943_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2966983_2967301_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2967385_2968102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2968365_2969787_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2969853_2972601_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2972933_2973950_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974285_2974927_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975017_2976454_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976611_2977685_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2977681_2978818_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 23
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	2982571	3055088	4103249	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010930158.1|2982571_2983588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984525_2985953_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985949_2986972_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2986961_2987435_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987575_2988463_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988459_2990103_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2990099_2991107_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930158.1|2991937_2992954_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993053_2993686_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993694_2994084_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994136_2995189_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996052_2997759_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997832_2998333_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998347_3000405_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000431_3000725_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000826_3001774_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001786_3002662_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002782_3003343_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003377_3003701_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004136_3004874_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005172_3006123_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3006366_3006630_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3006703_3006985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3007001_3007862_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3007858_3008194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3008247_3008898_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3010578_3011523_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3011568_3011886_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3011888_3012827_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3013004_3013490_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3013508_3014057_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3014088_3014241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3015570_3016212_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3016366_3018715_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3018711_3019650_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3019675_3020866_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3020862_3021636_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3021665_3022859_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3022976_3023987_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3024004_3026041_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3026235_3026976_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3027074_3028025_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3028067_3029243_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3029464_3031255_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3031267_3032929_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3032941_3035647_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3035939_3037694_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3037690_3038317_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3038313_3039165_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3039294_3041355_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3041541_3042156_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3042301_3042553_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3042622_3044005_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3044001_3047181_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3047988_3048906_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3048957_3049689_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3049748_3050321_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3051829_3052846_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3052983_3054033_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3054137_3055088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	3074488	3139428	4103249	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3074488_3075439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3075537_3076122_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3076156_3077146_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3077142_3078084_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3078080_3079301_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3079343_3079658_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3079849_3080209_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3080210_3081926_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3082113_3082785_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3082799_3084128_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3084124_3085024_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3085110_3086196_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3086188_3087319_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3087321_3090003_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3090373_3090955_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3091080_3091806_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3091802_3092480_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3092695_3093877_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3094649_3094832_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3094861_3095812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3095941_3096334_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3096610_3097522_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3097646_3098621_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3098617_3099568_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3099666_3100752_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3100849_3101260_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3101875_3103789_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3103924_3106537_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3106538_3107273_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3107436_3108618_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3108614_3108827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3108823_3109804_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3109849_3110677_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3110826_3112641_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3112695_3113079_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3113075_3114026_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3114138_3114390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3114583_3114799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3114895_3116014_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3116133_3116346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3116505_3116727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3116779_3117730_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3118906_3120277_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3120309_3121101_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3121113_3122169_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3122194_3123070_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3123175_3123424_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3123458_3124913_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3124909_3125431_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3125459_3126812_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3127035_3129924_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3132068_3133370_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3133384_3134101_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3134382_3135063_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3135590_3136250_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3136648_3138481_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3138477_3139428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	3231051	3300054	4103249	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3231051_3232002_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3231998_3233018_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3233027_3235736_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3235883_3236540_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3236638_3237589_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3237736_3238630_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3238829_3240524_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3240558_3241485_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3241553_3242651_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3242669_3243533_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3243544_3244327_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3244323_3245442_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3245438_3246971_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3247011_3248019_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3248163_3248886_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3248901_3249924_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3250240_3250975_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3251059_3252805_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3252801_3253554_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3253598_3254555_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3254643_3255210_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3255217_3256078_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3256107_3256836_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3256867_3257551_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3258388_3259303_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3259367_3260276_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3260366_3261791_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3261792_3263115_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3263111_3265250_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3265327_3270448_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3270548_3270857_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3270926_3271484_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3271499_3272981_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3273035_3274889_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3275151_3276489_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3276523_3278521_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3278538_3280587_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3280717_3281584_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3281852_3282818_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3282932_3284081_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3284505_3284817_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3284850_3285111_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3285260_3286394_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3286464_3287601_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3287766_3288561_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3288623_3289067_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3289182_3290133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3290255_3290663_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3290735_3292931_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3293152_3294103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3294062_3294587_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3294718_3295690_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3295809_3298254_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3298269_3298860_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3299103_3300054_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	3315500	3415613	4103249	terminase,tail,tRNA,protease,transposase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3315500_3316451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3317182_3317560_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3317544_3318246_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3318389_3319082_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3319081_3320185_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3320294_3322667_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3322663_3324223_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3324247_3325045_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3325076_3326222_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3326326_3327769_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3327771_3329001_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3331138_3332089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3333218_3333776_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3333751_3334102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3334270_3335065_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3335061_3336111_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3336110_3336800_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3336886_3337384_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3337415_3338732_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3338748_3339723_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3339759_3340218_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3340217_3340898_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3340900_3341329_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3341381_3343112_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3343177_3343750_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3343730_3344417_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3344772_3345444_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3345772_3345994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3345993_3346275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3346271_3346787_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3346786_3347338_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3347316_3347559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3347563_3348376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3348375_3348639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3348679_3348877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3348857_3349274_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3349278_3353235_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3353227_3353617_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3353613_3354147_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3354214_3354574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3354583_3357196_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3357221_3357512_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3357529_3357859_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3357868_3358387_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3358641_3359142_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3359149_3359572_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3359568_3359967_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3359963_3360359_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3360358_3360547_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3360560_3361043_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3361105_3361357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3362031_3362982_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3363410_3364013_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3364135_3364378_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3364383_3365439_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3365467_3366886_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3366888_3368166_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3368152_3368638_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3369277_3370228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3370484_3371174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3371166_3371418_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3371972_3372584_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3372655_3372862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3373113_3374064_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3374162_3375236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3375403_3376198_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3376237_3376762_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3376754_3378497_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3378706_3379465_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3379467_3380175_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3380191_3381073_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3381083_3381842_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3381810_3382566_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3382635_3384054_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3384075_3384726_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3384859_3385195_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3385283_3386234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3386310_3388131_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3388135_3389209_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3389331_3390300_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3390373_3391285_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3391303_3391876_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3391956_3392505_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3392504_3394094_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3394163_3394403_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3394443_3395469_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3395534_3396716_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3396812_3397265_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3397274_3398615_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3398931_3399969_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3400350_3400710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3400793_3401735_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3401809_3402760_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3403053_3404148_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3404238_3405111_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3405132_3405972_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3406047_3407565_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3407661_3408762_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3408778_3409201_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3409223_3409436_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3409482_3410403_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3410585_3411335_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3411337_3411667_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3411954_3413307_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3413318_3413702_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3413763_3414564_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3414662_3415613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011688	Bordetella pertussis strain C742 chromosome, complete genome	4103249	4002317	4067229	4103249	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4002317_4002803_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4002891_4003029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4003021_4004002_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4004268_4005078_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4005117_4005798_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4005791_4006250_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4006261_4006624_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4006706_4007390_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4007445_4007754_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4007772_4008087_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4008083_4010558_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4010565_4011957_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4011953_4012139_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4012117_4012819_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4012815_4013637_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4013617_4014742_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4014734_4015754_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4015959_4016850_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4017094_4017886_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4017968_4018343_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4018320_4019730_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4019722_4021105_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4021439_4023044_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4023121_4024093_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4024103_4025030_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4025420_4026371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4026540_4027767_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4027966_4028833_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4028825_4029788_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4029888_4030839_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4030937_4031888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4031986_4032937_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4032933_4034427_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4034423_4037531_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4037527_4040596_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4040592_4041843_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4042023_4042776_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4042817_4043462_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4043470_4044451_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4044550_4045294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4045376_4045724_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4045821_4046664_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4046708_4047596_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4047622_4047811_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4047908_4049366_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4049352_4050879_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4050897_4051365_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4051364_4052387_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4052507_4053248_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4053302_4054403_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4054404_4055595_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4055714_4056731_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4057049_4057721_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4057717_4058626_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4058837_4059485_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4063345_4064413_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4064423_4065233_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4065322_4066096_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010929577.1|4066278_4067229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
