The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	27282	70036	4106504	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	232666	307010	4106504	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	489374	607269	4106504	transposase,tRNA	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489374_490325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490423_491374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492096_493371_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493457_494540_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494550_495363_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495399_495726_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495730_496291_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496531_497524_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497542_498538_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498553_499930_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499922_502304_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502320_502710_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502836_503067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503171_504122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504220_505171_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505167_506040_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506970_508257_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508310_509237_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509255_509711_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510562_511354_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511385_512006_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512002_512632_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512644_513253_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513249_514239_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514344_515559_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517510_518461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519894_521181_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521346_521655_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|521676_522321_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|522361_524152_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524264_525125_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525121_526327_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526323_527208_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528724_529159_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529121_530120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530231_531377_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531451_532780_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532813_533404_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533693_534488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535657_536392_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536398_537265_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537272_539048_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539090_539588_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539884_540835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540933_541884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542224_543175_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545498_546647_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|546691_547315_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547467_548460_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548456_549194_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549273_550095_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550183_551047_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551173_551410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553384_554419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554477_555455_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555462_556383_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556379_558080_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558082_558988_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559031_560165_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560293_561244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561342_563412_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563454_565557_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565863_566940_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567015_567900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568082_568505_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568514_569915_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569957_570863_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570961_572503_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572537_573077_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573089_573560_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573697_573940_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574056_574938_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575010_575331_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576182_577133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578456_579233_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579267_581040_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581041_581944_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582068_582428_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582459_583422_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583520_584471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584483_585419_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585478_586318_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586314_587484_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587480_588770_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588812_589187_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|589301_590030_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590037_590742_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591005_592526_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592581_593145_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593163_594195_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594191_594980_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595155_596145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597901_598852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069128.1|600074_600977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600978_601833_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601879_602989_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602999_603518_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603547_604180_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604251_604911_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|604907_606047_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606396_607269_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	611683	675516	4106504	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611683_612700_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612971_613598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613653_614781_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614786_620504_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621071_622016_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622204_623140_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623257_624829_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624908_626117_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626614_627532_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629892_630114_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630444_631461_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631545_631797_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631800_632616_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632728_633607_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633718_635482_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635597_636938_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638007_639432_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639431_640133_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641637_642588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642683_643655_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643659_644340_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644477_644870_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644977_645994_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646233_647019_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647113_648523_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648533_649334_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649354_650125_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650167_650635_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650631_651582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653530_654409_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655335_658314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658667_659618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659614_660703_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660738_661602_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662741_663131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663134_663917_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663950_664736_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665011_666151_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666147_666939_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666935_667685_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667681_668554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668553_669555_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669551_670715_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670740_671424_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671377_672712_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672704_673799_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674565_675516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	694427	771736	4106504	protease,integrase,transposase,tRNA	Bacillus_phage(20.0%)	58	741564:741582	761452:761470
WP_023995489.1|694427_695378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695476_696952_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698539_699427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699429_700371_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700416_701982_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703759_705085_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705267_706725_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706688_707186_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707216_708188_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|708240_708672_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708801_709470_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710198_711302_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711407_712682_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712693_713719_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713720_715091_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715091_716228_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716274_718200_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718196_719318_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719314_720469_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720465_721596_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721603_723169_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723175_724558_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724836_725448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725539_726955_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726972_727683_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727679_729002_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729081_731043_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731168_732482_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732590_733889_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734071_734980_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734989_735199_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735210_736890_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736991_737945_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738035_738863_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738861_740748_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740744_741344_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741392_742292_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741564:741582	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742500_743451_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743573_744188_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744316_744913_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744909_745692_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745764_746856_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747135_748263_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748604_749651_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|750161_752918_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752919_755871_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755886_757098_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757094_757295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|757281_758232_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758248_758743_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758746_759004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759547_760459_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760540_760825_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761608_762559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761452:761470	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762977_765542_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765586_767440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767772_769344_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770785_771736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	1019768	1121112	4106504	transposase,tRNA	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1019768_1020884_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1020984_1021803_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1021900_1022512_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1022671_1024048_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1024110_1024569_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1024653_1025349_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1025410_1025692_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1026254_1027007_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1027051_1028128_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1028124_1029075_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1029177_1029840_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1029934_1030105_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1030457_1031459_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1031461_1032658_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1032678_1033482_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1033562_1033859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1033889_1034453_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1034493_1035351_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1035358_1036108_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1036129_1037002_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1037030_1037810_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1037843_1038641_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1041295_1041688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1041681_1042542_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1042545_1043508_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1044284_1044974_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1045834_1046785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1047134_1048004_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1048074_1048770_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1048759_1049269_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1049265_1050486_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1050433_1051336_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1052222_1053509_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1053547_1054921_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1054959_1055661_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1055959_1056949_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1057049_1057511_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1057526_1058075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1058216_1059692_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1059797_1060889_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1060892_1061675_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1061684_1062473_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1063598_1064033_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1064029_1065040_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1065083_1066010_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1066296_1066665_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1066881_1067832_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1067876_1070303_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1070351_1071044_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1071116_1072316_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1072333_1073239_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1073354_1074284_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1074309_1075656_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1075668_1076433_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1076446_1077229_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1077421_1078372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1078433_1079543_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1080055_1080892_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1081018_1081927_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1081923_1082874_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1083259_1083802_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1084837_1085788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1086029_1086398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1086443_1087568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1088702_1089443_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1089546_1090167_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1090270_1091221_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1091217_1093326_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1093470_1094130_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1094161_1094626_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1094901_1095087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1095138_1095891_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1095897_1097160_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1097201_1098440_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1099517_1100645_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1100655_1101483_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1101469_1102336_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1103702_1104107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1104469_1105381_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1105395_1106106_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1106102_1107347_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1107348_1107783_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1107811_1108117_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1108215_1109166_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1109222_1110371_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1110451_1111402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1111933_1112731_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1112778_1113432_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1113388_1114477_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1114641_1116867_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1119144_1120041_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1120161_1121112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	1151498	1222469	4106504	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1151498_1152449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1152505_1153618_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1156001_1156952_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1157542_1158319_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1158436_1158700_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1158800_1159805_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1160005_1161607_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1161632_1162391_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1162482_1163139_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1163229_1163994_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1164003_1164192_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1164247_1165291_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1165287_1165701_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1165697_1166318_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1166598_1167549_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1167716_1169108_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1169180_1169759_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1169875_1171273_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1171388_1172594_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1172693_1173212_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1173306_1173552_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1173779_1174094_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1174192_1179373_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1179369_1181538_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1181593_1183909_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1183913_1185233_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1185251_1186925_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1186929_1187598_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1187754_1191576_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_005015810.1|1191906_1192857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1192878_1194024_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1194172_1195102_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1195098_1196187_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1196183_1196987_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1196983_1197715_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1197772_1199062_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1199158_1199761_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1204314_1204653_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1205360_1205627_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1207333_1208284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1208280_1209612_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1210872_1212873_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1212865_1213507_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1213503_1213911_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1213907_1214708_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1214782_1215487_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1215518_1216313_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1216309_1217260_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1217358_1218309_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1218407_1218842_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1218924_1221261_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1221452_1222469_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	1269863	1350737	4106504	transposase,tRNA	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1269863_1270814_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1270810_1271761_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1272021_1273050_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1273129_1274428_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1274424_1275006_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1275318_1279365_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1279605_1287267_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1287263_1288214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1289353_1289827_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1289966_1290587_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1290722_1291523_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1291577_1292669_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1292690_1293134_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1293162_1293795_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1293905_1294322_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1294314_1295007_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1295113_1295488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1295564_1296374_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1296469_1297414_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1297452_1298424_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1298514_1298952_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1299010_1299892_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1300895_1301756_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1301788_1303171_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1303167_1304187_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1304559_1305054_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1305061_1305802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1305882_1307487_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1307526_1308315_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1308440_1310606_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1311486_1312299_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1312311_1312620_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1312737_1314468_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1314469_1315672_-	lipoprotein	NA	NA	NA	NA	NA
WP_003810957.1|1316533_1317001_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1317136_1318519_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1318515_1319640_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1319636_1322273_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1322688_1323639_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1327385_1327997_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1328219_1329680_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1329776_1331369_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1331722_1331980_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1331981_1333322_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1333417_1334107_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1334119_1335550_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1337274_1338096_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1338106_1339678_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1339706_1340684_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1340710_1341514_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1341510_1342305_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1342312_1343548_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1343561_1343975_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_162291062.1|1344330_1344603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1344724_1345675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1346296_1348024_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1348135_1349494_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1349786_1350737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	1470128	1522281	4106504	transposase,tRNA	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1470128_1471079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1471245_1471599_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1471611_1471974_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1472015_1472441_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1472643_1473900_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1474098_1475079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1475228_1476470_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1476568_1477519_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1477527_1478223_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1481044_1481644_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1481654_1483820_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1483843_1485628_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1485627_1485717_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1486411_1486684_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1486683_1488750_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1488746_1489697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1489795_1490746_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1490861_1491194_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1491190_1491877_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1491863_1492823_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1492855_1495225_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1495224_1495857_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1495958_1497299_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1497345_1498701_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1498991_1499228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1499415_1499733_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1500005_1500521_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1500791_1501547_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1501885_1502092_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1502099_1502759_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1503053_1505258_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1505368_1506592_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1506714_1507689_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1507756_1508950_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1508964_1509765_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1509761_1511618_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1511614_1512220_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1512238_1513624_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1514349_1515576_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1515664_1516447_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1516545_1517496_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1517522_1518296_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1518307_1519549_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1521330_1522281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	1566206	1634292	4106504	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1566206_1566695_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1566812_1567391_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1567496_1567865_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1567963_1568914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1568920_1570033_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1570719_1571922_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1572125_1574786_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1574798_1578203_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1578870_1581096_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1581142_1581469_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1581519_1582128_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1582226_1583177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1583246_1584011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1584007_1584544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1584710_1585562_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1585621_1586248_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1586244_1587195_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1587293_1588406_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1588395_1589397_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1589502_1591014_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1591010_1592315_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1592426_1592987_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1593254_1593809_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1594264_1594480_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1594734_1597332_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1597328_1598516_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1599174_1599789_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1599877_1600999_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1601016_1601922_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1602814_1603765_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1603946_1604699_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1604767_1605427_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1605423_1606152_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1606164_1608444_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1608468_1608672_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1608713_1609346_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1609481_1610399_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1610395_1611109_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1611346_1612117_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1612121_1612721_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1612965_1614456_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1614514_1614799_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1615364_1616291_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1616427_1617168_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1617334_1618711_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1618892_1619798_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1621449_1623252_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1623369_1624020_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1624118_1625069_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1625090_1626311_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1626496_1627909_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1627972_1629040_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1629039_1630527_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1630536_1631481_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1631640_1632339_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1632416_1633322_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1633341_1634292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	1670241	1725832	4106504	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1670241_1671192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1671250_1672024_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1672016_1673573_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1673569_1674520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1675846_1676449_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1676688_1677390_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1677383_1678166_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1678350_1679301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1679399_1680137_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1680326_1681085_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1681131_1682121_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1682298_1683267_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1684806_1685775_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1685783_1686725_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1687198_1688209_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1688199_1689714_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1689710_1691057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1691059_1692094_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1692143_1693769_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1694321_1695272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1695376_1696324_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1696377_1698192_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1698184_1698859_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1698988_1702063_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1702076_1702376_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1702690_1703314_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1703557_1704427_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1704404_1705349_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1705434_1706361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1706473_1707253_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1707243_1708440_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1708470_1709421_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1709642_1710332_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1710396_1711152_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1711203_1712196_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1712205_1713159_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1713274_1714237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1715638_1716067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1716063_1717014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1717307_1718030_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1718468_1719656_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1719659_1720010_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1721759_1722731_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1722744_1723458_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1723462_1724380_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1724486_1724783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1724881_1725832_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	1959646	2029298	4106504	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1959646_1962304_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1962381_1963584_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1963580_1964093_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1964215_1964653_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1964929_1965880_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1965978_1966929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1967092_1968988_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1969101_1969269_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1969332_1969569_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1969937_1971089_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1972652_1973603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1974054_1975056_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1975228_1976086_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1976082_1977345_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1977445_1977820_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1977892_1979080_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1979164_1979935_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1980048_1980813_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1980763_1982065_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1982061_1982868_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1984612_1985584_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1985740_1986253_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1986411_1987386_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1988386_1989181_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1989206_1990013_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1990123_1990714_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1990724_1991903_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1992005_1992380_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1992632_1993964_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1994030_1997261_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1998751_1999498_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1999582_2000044_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2000081_2001140_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2001102_2002932_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2002971_2003544_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2004968_2005790_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2006108_2007431_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2007790_2008426_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2008385_2009336_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2010206_2011079_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2011156_2012296_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2012654_2013911_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2013916_2014444_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2014448_2015267_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2015266_2015989_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2016010_2016325_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2016342_2017491_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2017521_2018397_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2018393_2019713_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2019785_2020982_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2020992_2022480_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2025074_2025974_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2026111_2027077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2027175_2028126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2028347_2029298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	2040794	2090190	4106504	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2040794_2041745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2042882_2043179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2043353_2044706_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2044848_2045865_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2047844_2048858_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2048944_2049850_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2050006_2050351_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2050508_2050967_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2050980_2053197_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2053193_2054255_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2054283_2055258_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2055209_2056028_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2056040_2056649_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2056823_2057219_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2057237_2058677_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2058705_2059053_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2059071_2060022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2060674_2061625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2061708_2063526_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2063599_2064247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2064259_2065189_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2065358_2065823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2066070_2066751_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2066799_2068491_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2068506_2069058_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2069054_2069426_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2069538_2070375_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2070385_2070910_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2071007_2071187_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2071316_2072291_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2072421_2072778_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2072767_2073643_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2073741_2074626_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2074647_2075943_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2076891_2077542_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2077629_2079150_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2079407_2081273_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2082318_2083269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2083286_2083427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2084241_2084601_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2084588_2086025_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2086021_2086675_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2086671_2087865_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2087968_2089243_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2089239_2090190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	2101394	2142085	4106504	transposase,protease,tRNA	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2101394_2102345_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2102443_2103394_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2103353_2103767_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2104051_2104351_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2104760_2107043_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2107508_2107703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2107728_2109759_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2109778_2109991_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2110268_2110808_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2110921_2112217_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2112293_2113451_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2113634_2114534_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2114552_2115857_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2115822_2116929_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2117016_2117253_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2117391_2118462_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2118465_2119821_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2119847_2121005_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2121010_2121649_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2121650_2122946_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2122995_2124282_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2124297_2124804_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2124800_2125949_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2125976_2126402_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2126724_2129607_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2129699_2130455_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2131220_2132570_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2132668_2133619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2133717_2134668_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2134741_2135215_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2135240_2136449_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2136445_2137219_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2137218_2137842_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2138007_2138268_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2138571_2139153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2139219_2139474_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2139460_2142085_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	2169868	2235417	4106504	transposase,protease,tRNA	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2169868_2170819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2171019_2171829_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2171953_2172904_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2172900_2173794_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2173918_2174113_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2174112_2174454_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2174463_2176326_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2176455_2176968_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2176970_2177294_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2177295_2177706_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2177743_2178955_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2178972_2179485_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2179700_2180192_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2180444_2182481_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2182558_2183761_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2183889_2184540_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2186097_2187048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2187618_2187831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2187848_2188580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2188614_2189256_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2189248_2189917_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2192129_2192906_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2192927_2194085_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2194081_2194513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2194509_2195307_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2195326_2195728_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2195794_2196766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2196831_2198055_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2198282_2199233_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2199356_2201810_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2201998_2203303_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2203407_2204061_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2204063_2205374_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2205552_2206131_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2206242_2206443_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2206788_2207355_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2207438_2207642_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2207948_2208269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2208310_2208592_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2208666_2209923_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2210305_2210635_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2212205_2213027_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2213026_2214166_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2214172_2215069_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2215083_2216991_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2217350_2219963_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2220015_2222316_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2222312_2223521_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2223782_2224157_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2224153_2225104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2225202_2227197_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2227256_2228222_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2228211_2231073_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2231075_2231582_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2231686_2232895_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2232896_2233835_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2233996_2234470_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2234466_2235417_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	2320545	2384123	4106504	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2320545_2321496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2321797_2322274_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2322897_2324535_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2324565_2325879_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2326012_2326330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2326430_2327753_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2327749_2328700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2328798_2329749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2330278_2331301_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2331329_2332160_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2332176_2333874_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2333938_2335015_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2335174_2336038_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2336068_2336638_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2336654_2337506_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2338563_2339445_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2339519_2340509_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2340571_2341522_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2341584_2342442_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2342501_2342990_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2344562_2345753_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2345749_2347336_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2347354_2348422_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2348526_2350071_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2350490_2352065_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2352181_2353189_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2353185_2354025_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2354029_2355667_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2355663_2356614_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2356756_2358031_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2358060_2358351_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2358423_2359437_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2359456_2360719_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2360721_2361645_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2361641_2363135_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2363145_2364078_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2364259_2365585_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2365619_2366975_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2367035_2368556_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2368710_2369442_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2369539_2370850_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2370865_2371777_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2371767_2372361_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2372422_2372809_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2372820_2373291_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2373302_2373926_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2373946_2376694_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2383172_2384123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	2529064	2587308	4106504	transposase,tRNA	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2529064_2530015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2530494_2531151_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2531165_2532833_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2532835_2533465_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2533676_2534771_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2534915_2535728_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2535731_2537315_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2537485_2538616_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2538802_2539879_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2539960_2540611_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2540625_2542029_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2542312_2543131_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2543127_2543832_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2544731_2545847_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2545880_2546255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2546277_2547435_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2547447_2547681_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2548315_2551285_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2551299_2551509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2551660_2552290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2552286_2554344_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2554400_2555081_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2555077_2555638_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2555644_2556742_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2556894_2557488_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2557484_2558777_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2558790_2559333_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2559342_2560179_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2560212_2561274_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2561315_2562368_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2562383_2562686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2562827_2563778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2563956_2565651_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2565647_2566733_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2566780_2567680_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2567690_2568335_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2569356_2572599_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2572609_2573764_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2573990_2574953_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2575051_2576002_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2576100_2577051_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2577060_2577750_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2577809_2578247_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2578292_2579186_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2579233_2580406_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2580402_2581557_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2581753_2582104_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2582093_2582528_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2582544_2583495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2583642_2584110_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2584090_2585248_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2585313_2586240_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2586357_2587308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	2629588	2696088	4106504	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629588_2630539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630908_2631481_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2631483_2632494_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2632486_2632987_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632997_2633339_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2633407_2634142_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2634158_2634428_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2634450_2635239_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010930525.1|2635285_2636302_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2636518_2637961_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2638139_2639759_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639879_2641700_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641778_2643311_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2643344_2644991_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2645060_2646083_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2646100_2647234_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2647236_2647926_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647925_2648711_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648754_2649519_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649557_2650979_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2651044_2651749_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651796_2652216_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2652228_2652636_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652819_2653530_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653656_2653947_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653964_2654447_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658952_2660107_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2660412_2661429_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661675_2662464_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2662530_2663211_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2663207_2663978_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2664076_2665027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2665082_2666000_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2666010_2667189_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2667208_2668204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669792_2670401_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2670388_2671429_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2671446_2672409_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2672405_2673599_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673595_2674393_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2674418_2675405_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2675423_2677463_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2677664_2678345_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2678358_2679270_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2679266_2679845_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679983_2680889_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680896_2684316_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2684303_2686904_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687859_2688492_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688885_2689644_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2689640_2690843_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2691030_2691981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692888_2694034_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2694020_2694776_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694892_2695072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2695137_2696088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	2878491	3029200	4106504	transposase,tRNA,holin	uncultured_Mediterranean_phage(16.67%)	118	NA	NA
WP_010929956.1|2878491_2879442_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2879540_2880422_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2880499_2881879_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2881917_2882763_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2882778_2883093_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2883125_2883662_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2883834_2884410_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2884512_2885250_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2885317_2886955_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2887062_2887818_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2887805_2888768_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2888875_2889670_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2889731_2891807_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2891971_2894347_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2894427_2895783_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2897261_2897984_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2898038_2899022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2899151_2900102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2900098_2901001_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2901088_2901847_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901859_2902951_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2903048_2904476_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904705_2905920_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905965_2908836_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2911246_2911735_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911860_2914557_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914711_2916994_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2917161_2917794_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2917892_2918843_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918889_2919444_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2919511_2920357_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2920426_2921395_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2921394_2923191_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2925090_2929017_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929752_2932983_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2933264_2934092_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2934125_2934821_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934813_2936094_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2936103_2937081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2937062_2938763_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938865_2939969_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939999_2940755_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940761_2942282_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2942324_2942627_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942623_2943256_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2943334_2945200_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2945196_2945991_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2946019_2947135_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2948039_2948918_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948917_2949742_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949909_2950860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2951072_2953922_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953903_2954632_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954772_2956236_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2956232_2956604_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956621_2957935_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957971_2958430_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2958542_2959493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2959489_2960503_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960642_2961629_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961987_2962695_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2963275_2964226_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2964377_2964980_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964998_2965631_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965675_2965927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965868_2967755_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2967773_2968616_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2968612_2969971_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2970191_2970986_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2971216_2972710_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2972945_2975027_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2975221_2976262_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2976396_2977413_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2977434_2978292_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2978336_2979113_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2979480_2980431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2980457_2980922_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2982128_2984417_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2984533_2985406_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2985448_2986603_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986637_2987468_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987551_2989096_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2989138_2989498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2989499_2989913_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989953_2990271_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2990355_2991072_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2991335_2992757_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2995429_2996380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2996359_2996614_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996952_2997969_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2998304_2998946_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2999036_3000473_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000630_3001704_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001700_3002837_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002981_3003326_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3003392_3005273_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3005322_3006258_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006590_3007607_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3008544_3009972_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009968_3010991_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010980_3011454_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011594_3012482_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3012478_3014122_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3014118_3015126_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015956_3016973_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3017072_3017705_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017713_3018103_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3018155_3019208_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3020071_3020836_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_003811919.1|3020909_3021410_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3021424_3023482_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3023508_3023802_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023903_3024851_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024863_3025739_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025859_3026420_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3026454_3026778_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3027213_3027951_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3028249_3029200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	3050151	3190719	4106504	transposase	Bacillus_virus(11.11%)	114	NA	NA
WP_010929969.1|3050151_3051102_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3051200_3052151_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3052193_3053369_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053590_3055381_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3055393_3057055_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057067_3059773_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060065_3061820_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061816_3062443_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3062439_3063291_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3063420_3065481_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065667_3066282_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3066427_3066679_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066748_3068131_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3068127_3071307_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3072114_3073032_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3073083_3073815_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073874_3074447_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075955_3076972_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3077109_3078159_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3078263_3079214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3079309_3080035_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3080245_3080626_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080931_3081804_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081811_3082192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3082345_3083620_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3085107_3086016_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086813_3087878_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3089714_3090749_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090938_3091580_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091662_3093489_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093732_3094662_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094661_3095411_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3095482_3096397_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3096416_3097562_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097622_3098534_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098614_3099565_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3099663_3100248_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3100282_3101272_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3101268_3102210_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3102206_3103427_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3103469_3103784_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3103975_3104335_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3104336_3106052_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3106239_3106911_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3106925_3108254_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3108250_3109150_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3109236_3110322_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3110314_3111445_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3111447_3114129_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3114499_3115081_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3115206_3115932_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3115928_3116606_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3116821_3118003_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3118775_3118958_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3118987_3119938_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120067_3120460_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120736_3121648_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121772_3122747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122743_3123694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123792_3124878_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124975_3125386_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3126001_3127915_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3128050_3130663_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130664_3131399_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131562_3132744_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132740_3132953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132949_3133930_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133975_3134803_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134952_3136767_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136821_3137205_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3137201_3138152_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3138264_3138516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3138709_3138925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139021_3140140_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3140259_3140472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140631_3140853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140905_3141856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143032_3144403_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3144435_3145227_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3145239_3146295_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3146320_3147196_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3147301_3147550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147584_3149039_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149035_3149557_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149585_3150938_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3151161_3154050_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3156194_3157496_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3157510_3158227_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3158508_3159189_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3159716_3160376_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160774_3162607_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162603_3163554_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164717_3166433_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3166443_3166935_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3167007_3168024_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3168191_3168971_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168989_3169517_-	lipoprotein	NA	NA	NA	NA	NA
WP_005019401.1|3169515_3169722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814002.1|3169810_3170080_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3170170_3172330_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3172450_3173170_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3173166_3174117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3174257_3175475_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3175468_3176080_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3176713_3177691_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3177834_3178581_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3178602_3179049_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3179836_3182068_+	BCCT family transporter	NA	NA	NA	NA	NA
WP_003813993.1|3182090_3182891_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3183172_3184405_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3184515_3185505_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3185535_3186924_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3188522_3189506_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3189702_3190719_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	3255177	3324180	4106504	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3255177_3256128_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3256124_3257144_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3257153_3259862_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3260009_3260666_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260764_3261715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3261862_3262756_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3262955_3264650_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3264684_3265611_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3265679_3266777_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3266795_3267659_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3267670_3268453_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3268449_3269568_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3269564_3271097_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3271137_3272145_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3272289_3273012_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3273027_3274050_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3274366_3275101_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3275185_3276931_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3276927_3277680_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3277724_3278681_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3278769_3279336_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3279343_3280204_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3280233_3280962_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3280993_3281677_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3282514_3283429_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3283493_3284402_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3284492_3285917_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3285918_3287241_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3287237_3289376_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3289453_3294574_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3294674_3294983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3295052_3295610_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3295625_3297107_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3297161_3299015_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3299277_3300615_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3300649_3302647_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3302664_3304713_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3304843_3305710_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3305978_3306944_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3307058_3308207_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3308631_3308943_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3308976_3309237_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3309386_3310520_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3310590_3311727_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3311892_3312687_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3312749_3313193_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3313308_3314259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3314381_3314789_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3314861_3317057_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317278_3318229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3318188_3318713_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318844_3319816_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319935_3322380_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3322395_3322986_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3323229_3324180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	3339626	3439739	4106504	terminase,protease,tRNA,tail,transposase	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3339626_3340577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3341308_3341686_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341670_3342372_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3342515_3343208_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3343207_3344311_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3344420_3346793_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346789_3348349_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3348373_3349171_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3349202_3350348_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3350452_3351895_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351897_3353127_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3355264_3356215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3357344_3357902_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3357877_3358228_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3358396_3359191_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3359187_3360237_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3360236_3360926_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3361012_3361510_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3361541_3362858_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3362874_3363849_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3363885_3364344_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3364343_3365024_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3365026_3365455_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3365507_3367238_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3367303_3367876_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367856_3368543_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368898_3369570_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369898_3370120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3370119_3370401_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3370397_3370913_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370912_3371464_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3371442_3371685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371689_3372502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3372501_3372765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372805_3373003_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372983_3373400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3373404_3377361_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3377353_3377743_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377739_3378273_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3378340_3378700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378709_3381322_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3381347_3381638_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381655_3381985_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381994_3382513_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382767_3383268_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3383275_3383698_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383694_3384093_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3384089_3384485_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3384484_3384673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384686_3385169_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3385231_3385483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3386157_3387108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3387536_3388139_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3388261_3388504_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3388509_3389565_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389593_3391012_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391014_3392292_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3392278_3392764_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3393403_3394354_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3394610_3395300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3395292_3395544_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3396098_3396710_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396781_3396988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3397239_3398190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3398288_3399362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3399529_3400324_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3400363_3400888_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3400880_3402623_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3402832_3403591_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3403593_3404301_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3404317_3405199_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3405209_3405968_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3405936_3406692_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3406761_3408180_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3408201_3408852_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3408985_3409321_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3409409_3410360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3410436_3412257_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3412261_3413335_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3413457_3414426_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3414499_3415411_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3415429_3416002_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3416082_3416631_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416630_3418220_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3418289_3418529_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418569_3419595_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419660_3420842_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420938_3421391_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3421400_3422741_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3423057_3424095_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3424476_3424836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424919_3425861_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425935_3426886_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3427179_3428274_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3428364_3429237_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3429258_3430098_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3430173_3431691_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431787_3432888_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432904_3433327_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3433349_3433562_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433608_3434529_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434711_3435461_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3435463_3435793_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3436080_3437433_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3437444_3437828_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437889_3438690_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438788_3439739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	3600408	3655382	4106504	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3600408_3601359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601475_3602543_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602618_3605747_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606254_3607220_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607222_3607894_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608050_3609010_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609017_3609680_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609676_3610627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610748_3612002_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611979_3612942_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3613073_3613568_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613567_3614800_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3615545_3615827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615813_3616800_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616943_3617348_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3617489_3620876_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620906_3622370_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3622378_3624007_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3624092_3624752_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624781_3625222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625732_3625936_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3626111_3627017_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3627115_3628066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3628164_3629115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630896_3632090_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3632155_3633184_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3633210_3634383_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3634508_3635486_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3635496_3636468_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3636534_3637320_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3637312_3638545_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638740_3639496_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639606_3640125_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641913_3643314_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3643413_3643758_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643846_3644317_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644727_3645126_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3645257_3646208_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648652_3649387_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649796_3649976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3650166_3651480_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3651495_3653007_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3653003_3654209_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3654404_3655382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	3745195	3860865	4106504	transposase,protease,tRNA	Bacillus_phage(12.5%)	100	NA	NA
WP_005013747.1|3745195_3746146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3746268_3746997_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3747093_3748272_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3748268_3749102_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3749138_3749879_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749998_3751174_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3751170_3752124_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3752137_3752539_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3752531_3753137_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3753224_3753389_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3753505_3754354_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3754350_3755004_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3755020_3756304_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3756543_3758169_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3758262_3758664_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758688_3759123_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3759124_3760774_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760814_3761984_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3761986_3762850_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3766213_3766918_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766911_3767706_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767702_3768668_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768671_3769592_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769688_3770852_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3771074_3771965_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771968_3772472_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3772514_3773513_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3773509_3774460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3774548_3774836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3775027_3775978_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3776037_3776598_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3778100_3778982_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3779095_3780298_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3780426_3782286_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3782363_3783173_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3783243_3784245_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3784276_3785137_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3785336_3786341_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3786337_3787924_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787932_3788859_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788881_3789508_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3789606_3790557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790553_3791690_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791743_3792520_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3792544_3793003_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3793142_3793784_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793848_3795231_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3795256_3796105_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3796263_3796875_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3796884_3797334_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929718.1|3798000_3798162_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3798237_3798453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3798439_3799390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3800433_3800712_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|3801854_3802403_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929715.1|3802465_3804145_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3804141_3805893_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3805889_3806015_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3806028_3807183_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|3807198_3808776_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3808901_3809447_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3810006_3810957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811687_3812668_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812681_3813806_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813813_3815568_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815674_3816574_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816638_3817622_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817757_3818738_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818754_3820146_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820297_3820834_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820764_3822150_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822292_3822931_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3823017_3824907_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824903_3825845_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825950_3827000_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827252_3827954_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827950_3828649_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828649_3830005_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3830001_3830493_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830511_3831468_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832878_3834981_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835151_3836195_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836238_3836982_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3838003_3838414_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3839363_3840161_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840259_3841210_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841206_3842157_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842243_3843194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843308_3844310_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844400_3844967_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845285_3847199_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847240_3848671_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848783_3850196_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850212_3850908_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851126_3852077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852101_3853001_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853155_3853704_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853742_3854462_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3854632_3857476_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3858069_3860865_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 27
NZ_CP011244	Bordetella pertussis strain J022 chromosome, complete genome	4106504	4005572	4070484	4106504	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005572_4006058_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006146_4006284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006276_4007257_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007523_4008333_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008372_4009053_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009046_4009505_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009516_4009879_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009961_4010645_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010700_4011009_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011027_4011342_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011338_4013813_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013820_4015212_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015208_4015394_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015372_4016074_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016070_4016892_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016872_4017997_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017989_4019009_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019214_4020105_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020349_4021141_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021223_4021598_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021575_4022985_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022977_4024360_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024694_4026299_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026376_4027348_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027358_4028285_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028675_4029626_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029795_4031022_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031221_4032088_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032080_4033043_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033143_4034094_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034192_4035143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035241_4036192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036188_4037682_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037678_4040786_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040782_4043851_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043847_4045098_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045278_4046031_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046072_4046717_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046725_4047706_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047805_4048549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048631_4048979_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049076_4049919_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049963_4050851_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050877_4051066_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051163_4052621_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052607_4054134_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054152_4054620_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054619_4055642_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055762_4056503_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056557_4057658_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057659_4058850_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058969_4059986_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060304_4060976_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060972_4061881_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062092_4062740_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066600_4067668_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067678_4068488_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068577_4069351_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069533_4070484_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
