The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	27282	70036	4109711	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	77634	136108	4109711	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	164893	225404	4109711	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005012067.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	233336	286924	4109711	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278108_278255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	390857	448366	4109711	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	590600	651791	4109711	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590600_591551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592047_592917_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592913_593735_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593934_594426_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594444_595518_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595564_596668_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596743_597364_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597384_597894_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597948_598200_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598263_599397_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599404_599791_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599787_602307_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602735_603074_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603070_603577_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603638_604439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604549_605491_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605584_607120_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608799_610650_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610653_611487_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611486_612428_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612679_613651_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613792_616081_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616387_617296_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617350_618316_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618390_620052_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620123_620834_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620800_620965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620982_621933_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622631_623015_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623072_623675_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623692_624094_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624227_625121_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625117_625699_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626493_627228_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627268_628318_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628465_629044_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629430_630408_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630501_634896_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635096_635945_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636103_636916_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636971_637922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638020_638821_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638882_639266_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639277_640711_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640917_641247_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641249_641999_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642181_643102_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|643148_643361_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643383_643806_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643822_644923_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645019_646537_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646612_647452_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647473_648355_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648436_649531_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649824_650775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650849_651791_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	657115	703306	4109711	terminase,tRNA,tail,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657115_658141_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658181_658421_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658490_660080_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660079_660628_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660708_661281_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661299_662211_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662284_663253_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663375_664449_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664453_666274_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666350_667301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667389_667725_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667858_668509_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668530_669949_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670018_670774_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670742_671501_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671511_672393_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672409_673117_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673119_673878_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674087_675830_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675822_676347_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676386_677181_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677348_678422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678520_679471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679722_679929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680000_680612_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|681166_681418_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681410_682100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682117_682339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682356_683307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683946_684432_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684418_685696_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685698_687117_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|687145_688201_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688206_688449_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688571_689174_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689602_690553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691227_691479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691541_692024_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692025_692226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692225_692621_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692617_693016_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693012_693435_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693442_693943_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694197_694716_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694725_695055_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695072_695363_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695388_698001_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698010_698370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698437_698971_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698967_699357_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699349_703306_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	709472	764451	4109711	tRNA,transposase	Planktothrix_phage(50.0%)	47	NA	NA
WP_003814636.1|709472_711203_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711255_711684_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711686_712367_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712366_712825_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712861_713836_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713852_715169_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715200_715698_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715784_716474_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716473_717523_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717519_718314_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718482_718833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718808_719366_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720495_721446_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723583_724813_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724815_726258_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726362_727508_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727539_728337_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728361_729921_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729917_732290_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732399_733503_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733502_734195_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734338_735040_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735024_735402_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|736133_737084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737243_738116_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738456_738675_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738714_740094_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|740135_741533_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741572_743225_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743228_744113_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744112_745054_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745132_746752_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746918_747734_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747801_748371_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748371_749322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749976_751074_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751107_752373_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752530_753481_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753724_754315_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754330_756775_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756894_757866_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757997_758522_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758481_759432_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759653_761849_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761921_762350_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762451_763402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|763500_764451_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	855329	904593	4109711	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855329_856280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856297_856852_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856853_857288_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857284_857719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857702_858506_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858522_859338_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859334_860150_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860296_860998_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|861025_862984_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|863066_864017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864237_864906_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|865029_866136_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|866148_869262_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869258_870752_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870766_871438_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871481_871976_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|872116_872764_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872867_874916_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874912_876925_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876950_878285_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878393_879386_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879452_881537_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881561_882533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882661_883693_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883696_884848_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|885018_885942_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|886019_886844_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|887040_888057_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888253_889237_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890835_892224_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892254_893244_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893354_894587_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894868_895669_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895691_897923_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898710_899157_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899178_899925_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|900068_901046_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901679_902291_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902284_903502_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903642_904593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	914205	979145	4109711	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914205_915156_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|915152_916985_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917383_918043_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|918136_918283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918391_918559_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918570_919251_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919532_920249_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920263_921565_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923709_926598_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926821_928174_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928202_928724_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928720_930175_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930209_930458_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930563_931439_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931464_932520_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932532_933324_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933356_934727_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935903_936854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936906_937128_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937287_937500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937619_938738_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939243_939495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939607_940558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940554_940938_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940992_942807_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942956_943784_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943829_944810_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944806_945019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945015_946197_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946360_947095_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947096_949709_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949844_951758_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952373_952784_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952881_953967_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954065_955016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955012_955987_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|956111_957023_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957299_957692_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957821_958772_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958801_958984_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959756_960938_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|961153_961831_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961827_962553_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962678_963260_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963630_966312_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966311_967445_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967437_968523_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968609_969509_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969505_970834_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970848_971520_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971707_973423_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973424_973784_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973975_974290_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974332_975553_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975549_976491_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976487_977477_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977511_978096_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978194_979145_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	998545	1061696	4109711	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|998545_999496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999600_1000650_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000787_1001804_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003312_1003885_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003944_1004676_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004727_1005645_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006452_1009632_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009628_1011011_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1011080_1011332_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011477_1012092_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012278_1014393_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014468_1015320_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015316_1015943_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015939_1017694_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017986_1020692_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020704_1022366_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022378_1024169_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024390_1025566_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025608_1026559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026657_1027398_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027592_1029629_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029646_1030657_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030774_1031968_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031997_1032771_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032767_1033958_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033983_1034922_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034918_1037267_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037421_1038063_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1038166_1039300_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039392_1039545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039576_1040125_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1040143_1040629_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040806_1041745_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041747_1042065_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042110_1043055_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044735_1045386_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045439_1045775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045771_1046632_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046648_1046930_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047003_1047267_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047510_1048461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048759_1049497_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049932_1050256_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050290_1050851_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050971_1051847_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051859_1052807_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052908_1053202_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053228_1055286_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055300_1055801_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055874_1057581_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058444_1059497_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059549_1059939_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059947_1060580_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060679_1061696_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1067680	1127743	4109711	holin,tRNA,transposase,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1067680_1069108_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070045_1071062_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071394_1072330_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072379_1074260_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074326_1074671_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074815_1075952_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075948_1077022_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077179_1078616_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078706_1079348_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079683_1080700_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1082742_1083693_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1084895_1086317_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1086580_1087297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1087381_1087699_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1087739_1088153_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1088154_1088514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1088556_1090101_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1090184_1091015_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091049_1092204_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1092246_1093119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1093235_1095524_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1096730_1097195_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1097221_1098172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1098189_1098327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1098539_1099316_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1099360_1100218_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1100239_1101256_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1101390_1102431_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1102625_1104707_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1104942_1106436_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1106666_1107461_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1107681_1109040_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109036_1109879_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1109897_1111784_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1111725_1111977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112021_1112654_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1112672_1113275_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1113426_1114377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1114957_1115665_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116023_1117010_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1117149_1118163_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1118159_1119110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1119127_1119268_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1119222_1119681_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1119717_1121031_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121048_1121420_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1121416_1122880_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123020_1123749_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1123730_1126580_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1126792_1127743_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1158809	1220980	4109711	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1158809_1159760_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1159858_1160482_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1160655_1162938_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1163092_1165789_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1165914_1166403_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1168813_1171684_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1171729_1172944_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1173173_1174601_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1174698_1175790_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1175802_1176561_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1176648_1177551_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1177547_1178498_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1178627_1179611_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1179665_1180388_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1181866_1183222_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1183302_1185678_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1185842_1187918_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1187979_1188780_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1188881_1189844_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1189831_1190587_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1190694_1192332_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1192399_1193137_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1193239_1193815_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1193987_1194524_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1194526_1194871_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1194886_1195732_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1195770_1197150_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1197227_1198109_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1198207_1199158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1199154_1199565_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1199672_1200527_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1200519_1201482_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1201527_1202652_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1202757_1203636_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1203760_1204540_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1204693_1206115_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1206549_1208247_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1208473_1209415_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1209741_1210488_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1210495_1211422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1211543_1212461_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1212500_1213454_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1213478_1214057_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1215730_1216339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1216416_1216770_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1216853_1217843_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1217839_1218028_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1218045_1218996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1219082_1220033_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1220029_1220980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1271907	1329118	4109711	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1271907_1272858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1276604_1277216_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1277438_1278899_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1278995_1280588_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1280941_1281199_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1281200_1282541_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1282636_1283326_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1283338_1284769_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1286493_1287315_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1287325_1288897_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1288925_1289903_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1289929_1290733_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1290729_1291524_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1291531_1292767_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1292759_1293194_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1293943_1294894_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1295515_1297243_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1297354_1298713_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1298769_1298988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1299005_1299956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1299996_1301067_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1301089_1301968_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1302139_1303111_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1303273_1304116_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1304277_1304958_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1304951_1306121_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1306117_1307149_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1307192_1308434_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1308468_1310001_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1310081_1310705_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1310735_1311347_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1311382_1311853_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1312284_1313289_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1313325_1314840_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1314843_1315803_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1315831_1316635_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1316636_1318271_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1318354_1319416_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1319614_1319884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1319887_1320412_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1320827_1321778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1321774_1322809_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1322917_1323556_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1323850_1324078_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1324200_1324914_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1325158_1326109_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1326212_1326494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1326608_1328057_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1328167_1329118_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1419351	1471504	4109711	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1419351_1420302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1420319_1420472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1420468_1420822_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420834_1421197_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1421238_1421664_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421866_1423123_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423321_1424302_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424451_1425693_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425791_1426742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426750_1427446_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1430267_1430867_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430877_1433043_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1433066_1434851_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434850_1434940_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435634_1435907_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435906_1437973_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437969_1438920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1439018_1439969_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1440084_1440417_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1440413_1441100_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1441086_1442046_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1442087_1444448_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1444447_1445080_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1445181_1446522_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1446568_1447924_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1448049_1448694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1448638_1448956_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1449228_1449744_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1449837_1449999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1450014_1450770_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1451108_1451315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1451322_1451982_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1452276_1454481_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1454591_1455815_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1455937_1456912_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1456979_1458173_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1458187_1458988_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1458984_1460841_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1460837_1461443_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1461461_1462847_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1463572_1464799_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1464887_1465670_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1465768_1466719_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1466745_1467519_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1467530_1468772_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1470553_1471504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1515429	1583515	4109711	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1515429_1515918_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1516035_1516614_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1516719_1517088_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1517186_1518137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1518143_1519256_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1519942_1521145_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1521180_1521327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1521348_1524009_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1524021_1527426_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1528093_1530319_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1530365_1530692_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1530742_1531351_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1531449_1532400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532469_1533234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1533230_1533830_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533933_1534785_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534844_1535471_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535467_1536418_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536516_1537629_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537618_1538620_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538725_1540237_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540233_1541538_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541649_1542210_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542477_1543032_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543487_1543703_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543957_1546555_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546551_1547739_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1548397_1549012_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1549100_1550228_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550239_1551145_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1552037_1552988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1553169_1553922_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553990_1554650_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554646_1555375_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555387_1557667_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557691_1557895_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557936_1558569_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558704_1559622_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559618_1560332_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560569_1561340_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561344_1561944_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562188_1563679_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563737_1564022_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1564159_1564315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1564587_1565514_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565650_1566391_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566557_1567934_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1568115_1569021_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570672_1572475_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1572601_1573243_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573341_1574292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574313_1575534_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575719_1577132_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1577195_1578263_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1578262_1579750_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579759_1580704_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580863_1581562_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581639_1582545_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582564_1583515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1619464	1675055	4109711	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619464_1620415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620473_1621247_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621239_1622796_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622792_1623743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1625069_1625672_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625911_1626613_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626606_1627389_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627573_1628524_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628622_1629360_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629549_1630308_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630354_1631344_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631521_1632490_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1634029_1634998_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1635006_1635948_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636421_1637432_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637422_1638937_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638933_1640280_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1640282_1641317_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641366_1642992_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643544_1644495_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644599_1645547_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645600_1647415_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647407_1648082_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648211_1651286_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651299_1651599_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651913_1652537_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1652780_1653650_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653627_1654572_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654657_1655584_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655696_1656476_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656466_1657663_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657693_1658644_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658865_1659555_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659619_1660375_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660426_1661419_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661428_1662382_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662497_1663460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664861_1665290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665286_1666237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1666530_1667268_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667691_1668879_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1668882_1669263_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670982_1671954_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671967_1672681_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672685_1673603_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673709_1674006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1674104_1675055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1832822	1892092	4109711	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1832822_1833773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833897_1834707_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1834907_1835858_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1837131_1838349_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839405_1840308_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840384_1841257_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841387_1841756_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841813_1842860_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1843055_1844312_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844316_1845654_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845803_1846760_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846862_1847795_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847910_1848231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1848223_1848583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848630_1850205_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1850257_1851202_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1851219_1852050_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1852042_1853677_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853673_1855029_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855935_1857513_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857516_1858791_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858888_1859263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860978_1862112_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1862149_1862755_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862751_1863570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863641_1866266_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866252_1866507_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866573_1867155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867458_1867719_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867884_1868508_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868507_1869281_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869277_1870486_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870511_1870985_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1871058_1872009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1872107_1873058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1873156_1874506_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1875271_1876027_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1876119_1879002_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879324_1879750_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879777_1880926_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880922_1881429_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1881435_1882731_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1882789_1884076_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1884077_1884716_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1884718_1885879_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885905_1887261_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1887264_1888335_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888473_1888710_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888797_1889904_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889869_1891174_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1891192_1892092_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1902332	1946655	4109711	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1902332_1903283_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903381_1904332_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1904531_1905617_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905632_1906394_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1906390_1907350_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1907412_1907913_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907945_1908689_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908784_1909024_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1909037_1909190_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1909275_1910766_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910857_1911796_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911792_1911969_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911971_1912634_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1914255_1914399_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914395_1915370_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1915264_1915519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1915536_1916487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916483_1917758_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917861_1919055_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1919051_1919705_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919701_1921138_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1921125_1921485_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1922299_1922440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1922457_1923408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924453_1926319_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926576_1928097_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1928184_1928835_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1929783_1931079_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1931100_1931985_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1932083_1932959_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932948_1933305_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933435_1934410_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934539_1934719_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934816_1935341_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935351_1936188_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936300_1936672_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1936668_1937220_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1937235_1938927_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938975_1939656_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939903_1940368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1940537_1941467_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1941479_1942127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1942200_1944018_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1944101_1945052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945704_1946655_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	1976428	2040797	4109711	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1976428_1977379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1977600_1978551_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1978649_1979615_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1979752_1980652_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1983246_1984734_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1984744_1985941_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1986013_1987333_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1987329_1988205_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1988235_1989384_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1989401_1989716_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1989737_1990460_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1990459_1991278_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1991282_1991810_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1991815_1993072_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1993430_1994570_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1994647_1995520_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1996390_1997341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1997300_1997936_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1998295_1999618_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1999936_2000758_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2002182_2002755_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2002794_2004624_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2004586_2005645_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2005682_2006144_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2006228_2006975_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2008465_2011696_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2011762_2013094_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2013346_2013721_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2013823_2015002_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2015012_2015603_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2015713_2016520_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2016545_2017340_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2018340_2019315_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019473_2019986_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2020142_2021114_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2022858_2023665_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2023661_2024963_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2024913_2025678_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2025791_2026562_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2026646_2027834_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2027906_2028281_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2028381_2029644_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2029640_2030498_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2030670_2031672_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2032123_2033074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2034589_2035789_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2036157_2036394_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2036457_2036625_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2036738_2038544_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2038797_2039748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2039846_2040797_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	2172326	2221979	4109711	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2172326_2173277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173375_2175370_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175429_2176395_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176384_2179246_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179248_2179755_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179859_2181068_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2181069_2182008_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2182169_2182643_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182639_2183590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183700_2184141_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2184269_2185499_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185537_2186359_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186412_2187564_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2187655_2188144_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190694_2193244_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2193314_2195888_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2196153_2196354_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196385_2196547_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196604_2196943_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2197091_2198042_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198816_2199485_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2199466_2201482_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2201664_2202414_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202426_2203290_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2203293_2204709_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204842_2205571_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205709_2205910_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2206085_2206484_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206507_2207908_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2208026_2208779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2209067_2209667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209771_2210551_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210547_2211432_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211449_2212229_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2212213_2212972_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2213097_2213745_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2214012_2215029_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2215126_2216167_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2216301_2217594_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218953_2219337_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219354_2219942_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2219979_2220930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2221028_2221979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	2479335	2537579	4109711	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2479335_2480286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2480765_2481422_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2481436_2483104_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2483106_2483736_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2483947_2485042_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2485186_2485999_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2486002_2487706_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2487756_2488887_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2489073_2490150_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2490231_2490882_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2490896_2492300_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2492583_2493402_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2493398_2494103_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2495002_2496118_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2496151_2496526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2496548_2497706_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2497718_2497952_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2498586_2501556_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2501570_2501780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2501931_2502561_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2502557_2504648_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2504671_2505352_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2505348_2505909_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2505915_2507013_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2507165_2507759_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2507755_2509048_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2509061_2509604_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2509613_2510450_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2510483_2511545_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2511586_2512639_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2512654_2512957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2513098_2514049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2514066_2514231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2514227_2515922_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2515918_2517004_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2517051_2517951_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2517961_2518606_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2519627_2522870_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2522880_2524035_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2524261_2525224_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2525322_2526273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2526371_2527322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2527331_2528021_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2528080_2528518_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2528563_2529457_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2529504_2530677_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2530673_2531828_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2532024_2532375_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2532364_2532799_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2532815_2533766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2533913_2534381_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2534361_2535519_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2535584_2536511_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2536628_2537579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	2579857	2646357	4109711	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2579857_2580808_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2581177_2581750_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2581752_2582763_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2582755_2583256_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2583266_2583608_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2583619_2584411_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2584427_2584697_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2584719_2585508_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2585554_2586571_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2586787_2588230_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2588408_2590028_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2590148_2591969_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2592047_2593580_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2593613_2595260_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2595329_2596352_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2596369_2597503_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2597505_2598195_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2598194_2598980_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2599023_2599788_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2599826_2601248_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2601313_2602018_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2602065_2602485_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2602497_2602905_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2603088_2603799_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2603925_2604216_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2604233_2604716_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2609221_2610376_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2610681_2611698_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2611944_2612733_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2612799_2613480_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2613476_2614247_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2614345_2615296_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2615351_2616269_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2616279_2617458_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2617477_2618473_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2620061_2620670_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2620657_2621698_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2621715_2622678_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2622674_2623868_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2623864_2624662_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2624687_2625674_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2625692_2627732_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2627933_2628614_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2628627_2629539_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2629535_2630114_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2630252_2631158_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2631165_2634585_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2634572_2637173_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2638128_2638761_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2639154_2639913_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2639909_2641112_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2641299_2642250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2643157_2644303_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2644289_2645045_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2645161_2645341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2645406_2646357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	2674472	2711884	4109711	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2674472_2675423_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2675521_2676472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2676564_2677104_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2677210_2677555_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2677612_2679061_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2679248_2679584_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2681211_2682390_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2682472_2682973_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2683082_2683784_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2683795_2684260_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2684274_2684550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2684546_2685323_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2685351_2686179_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2686304_2686775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2686901_2687795_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2687842_2689024_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2689036_2689852_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2689985_2690513_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2690509_2691007_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2691154_2691532_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2691753_2692704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2692802_2693414_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2693648_2694776_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2694886_2695975_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2696027_2696879_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2696898_2697780_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2697956_2699270_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2699480_2700314_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2700310_2700892_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2701245_2702196_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2702211_2703327_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2703429_2704356_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2704355_2705594_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2705590_2706358_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2706358_2707060_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2707141_2707588_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2708477_2709116_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2709884_2710835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2710933_2711884_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	2811011	2865528	4109711	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2811011_2811962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2812290_2812896_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2812949_2814263_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2814337_2814808_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2814807_2815596_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815606_2817259_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2817346_2818297_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2819458_2819965_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2819961_2820726_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2820741_2821026_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2821090_2822080_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2822251_2823181_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2823152_2823839_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2823872_2824418_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2824462_2825728_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2825724_2826627_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2827808_2828753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2828847_2830365_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2830406_2832035_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2832142_2833024_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2836136_2836511_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2836535_2836874_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2836917_2838552_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2838590_2839937_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2840044_2841466_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2841535_2842120_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2842222_2843173_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843307_2844414_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844424_2845522_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845666_2846872_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846878_2847400_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2847396_2847888_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847884_2848136_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2848116_2848602_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848737_2852199_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852216_2853101_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2853110_2853542_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853788_2854292_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854369_2855770_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855844_2856720_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856716_2857724_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858191_2858497_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858587_2859178_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859368_2860385_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860576_2862913_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862995_2863430_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2863528_2864479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2864577_2865528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	2873553	2930339	4109711	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2873553_2874504_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2876210_2876477_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2877184_2877523_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2882076_2882679_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2882775_2884065_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2884122_2884854_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2884850_2885654_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2885650_2886739_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2886735_2887665_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2887813_2888959_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2888980_2889931_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_158322896.1|2889948_2890107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2890261_2894083_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2894239_2894908_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2894912_2896586_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2896604_2897924_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2897928_2900244_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2900299_2902468_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2902464_2907654_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2907743_2908058_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2908285_2908531_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2908625_2909144_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2909243_2910449_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2910564_2911962_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2912078_2912657_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2912729_2914121_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010929591.1|2914288_2915239_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2915519_2916140_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2916136_2916550_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2916546_2917590_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2917645_2917834_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2917843_2918608_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2918698_2919355_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2919446_2920205_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2920230_2921832_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2922032_2923037_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2923137_2923401_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2923518_2924295_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2924885_2925836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2928219_2929332_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2929388_2930339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	2960725	3004416	4109711	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2960725_2961676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2961693_2961843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2961796_2962693_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2964970_2967196_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2967360_2968449_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2968405_2969059_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2969106_2969904_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2970435_2971386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2971460_2972615_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2972671_2973622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2973720_2974026_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2974054_2974489_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2974490_2975735_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2975731_2976442_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2976456_2977368_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2977730_2978135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2978131_2978590_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2978596_2979505_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2979501_2980368_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2980354_2981182_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2981192_2982320_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2983397_2984636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2984677_2985940_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2985946_2986699_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2986750_2986936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2987211_2987676_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2987707_2988367_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2988511_2990620_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2990616_2991567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2991670_2992291_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2992382_2993135_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2994269_2995394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2995439_2995808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996049_2997000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2998035_2998578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2998775_2998946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2998963_2999914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2999910_3000876_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3000945_3001782_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3002294_3003404_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3003465_3004416_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	3384362	3438103	4109711	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3384362_3385313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3385717_3386362_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3386386_3386971_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3387071_3387689_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3387691_3389407_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3389403_3389712_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3389728_3390346_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3390390_3390693_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3390793_3391648_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3391835_3392060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3392229_3392502_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3392919_3393327_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3393696_3394491_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3394591_3395827_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3395895_3396912_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3396923_3398300_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3398296_3399493_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3399489_3401028_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3401024_3402284_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3404224_3405175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3405941_3407036_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3407028_3408363_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3408316_3409000_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3409025_3410189_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3410185_3411187_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3411186_3412059_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3412055_3412805_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3412801_3413593_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3413589_3414729_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3415004_3415790_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3415823_3416606_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3416609_3416999_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3418138_3419002_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3419037_3420126_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3420122_3421073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3421426_3424405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3425331_3426210_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3428158_3429109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3429105_3429573_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3429615_3430386_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3430406_3431207_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3431217_3432627_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3432721_3433507_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3433746_3434763_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3434870_3435263_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3435400_3436081_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3436085_3437057_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3437152_3438103_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	3444258	3503556	4109711	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3444258_3446022_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3446133_3447012_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3447124_3447940_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3447943_3448195_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3448279_3449296_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3449626_3449848_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3452208_3453126_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3453623_3454832_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3454911_3456483_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3456600_3457536_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3457724_3458669_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3459236_3464954_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3464959_3466087_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3466142_3466769_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3467040_3468057_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3468152_3468863_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3468859_3469849_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3469944_3471576_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3471578_3472316_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3472471_3473344_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3473612_3474833_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3474829_3475489_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3475560_3476193_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3476222_3476741_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3476751_3477861_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3477907_3478762_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3478763_3479666_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3480888_3481839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3483593_3484583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3484579_3484738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3484758_3485547_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3485543_3486575_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3486593_3487157_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3487212_3488733_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3488996_3489701_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3489708_3490446_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3490551_3490926_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3490968_3492258_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3492254_3493424_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3493420_3494260_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3494319_3495255_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3495267_3496218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3496316_3497279_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3497310_3497670_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3497794_3498697_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3498698_3500471_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3500505_3501282_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3502605_3503556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	3518494	3576567	4109711	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3518494_3519445_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3519573_3520707_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3520750_3521656_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3521658_3523359_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3523355_3524276_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3524283_3525261_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3525319_3526354_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3528328_3528565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3528691_3529555_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3529643_3530465_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3530544_3531282_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3531278_3532271_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3532384_3533047_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3533091_3534240_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3536563_3537514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3537854_3538805_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3538903_3539854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3540150_3540648_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3540690_3542466_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3542473_3543340_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3543346_3544081_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3545250_3546045_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3546334_3546925_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3546958_3548287_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3548361_3549507_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3549618_3550617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3550579_3551014_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3552530_3553415_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3553411_3554617_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3554613_3555474_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3555586_3557377_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3557417_3558083_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3558083_3558392_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3558557_3559844_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3561277_3562228_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3564179_3565394_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3565499_3566489_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3566485_3567094_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3567106_3567736_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3567732_3568353_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3568384_3569176_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3570027_3570483_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3570501_3571428_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3571481_3572768_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3573698_3574571_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3574567_3575518_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3575616_3576567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011243	Bordetella pertussis strain I998 chromosome, complete genome	4109711	4031882	4085314	4109711	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4031882_4032833_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033002_4034229_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034428_4035295_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035287_4036250_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036350_4037301_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4037399_4038350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038448_4039399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039395_4040889_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040885_4043993_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043989_4047058_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047054_4048305_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4048485_4049247_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4049279_4049930_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4049932_4050772_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051012_4051756_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4051838_4052186_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052283_4053126_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053170_4054058_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054084_4054273_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054370_4055828_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055814_4057341_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057359_4057827_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4057826_4058849_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4058969_4059689_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4059764_4060865_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060866_4062057_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062176_4063193_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063511_4064183_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064179_4065088_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065299_4065947_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4069798_4070875_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070885_4071695_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4071784_4072558_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4072558_4072723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4072740_4073691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4073579_4074602_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4074591_4075746_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4075785_4077198_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4077322_4078189_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4078190_4079015_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4079011_4079773_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4079853_4080540_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4080713_4081721_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4081717_4082497_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4082554_4083817_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4084363_4085314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
