The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	27282	70036	4102182	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	77634	136108	4102182	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	164893	225404	4102182	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	233336	286924	4102182	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	390857	448366	4102182	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417525_417798_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_077069130.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	589371	650561	4102182	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590818_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_077069131.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622997_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638047_639481_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646243_647125_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	655885	702076	4102182	tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690795_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	708242	762172	4102182	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728687_731060_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731169_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736013_736886_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737226_737445_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737484_738864_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738905_740303_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740342_741995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741998_742883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742882_743824_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743902_745522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745688_746504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746571_747141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747141_748092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749877_751143_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751300_752251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756767_757292_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757251_758202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758423_760619_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760691_761120_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	813765	885778	4102182	transposase,holin	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|813765_814716_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|814814_815471_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|815618_818327_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|818336_819356_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|819352_820303_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|820401_820890_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|820886_821570_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|821599_825055_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|825090_825951_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|826079_826997_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|827134_828115_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|828174_829965_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|829961_830738_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|830747_831266_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|831378_833649_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|833860_836092_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|836392_836722_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|836738_838223_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|838233_839736_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|839732_841745_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|841762_842071_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|842067_842715_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|842732_843221_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|843242_844316_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|844315_846643_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|846658_848026_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|848022_848517_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|848562_849819_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|849821_850445_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|850519_850996_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|851032_851392_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|851580_852738_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|853050_854001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854018_854573_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854574_855009_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855005_855440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855423_856227_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856243_857059_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857055_857871_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858017_858719_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858746_860705_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860787_861738_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861958_862627_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862750_863857_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863869_866983_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866979_868473_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868487_869159_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869202_869697_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869837_870485_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870588_872637_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872633_874646_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874671_876006_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876114_877107_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877173_879258_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879282_880254_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880382_881414_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881417_882569_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882739_883663_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883740_884565_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	893412	956493	4102182	transposase,holin	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|893412_895644_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902310_903030_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903150_905310_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905400_905670_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|905963_906491_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906509_907289_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907456_908473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908545_909037_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909047_910763_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911926_912877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912873_914706_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915104_915764_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915857_916004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916112_916280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916291_916972_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917253_917970_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917984_919286_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921430_924319_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924542_925895_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925923_926445_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926441_927896_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927930_928179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928284_929160_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929185_930241_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930253_931045_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931077_932448_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933624_934575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934627_934849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935008_935221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935340_936459_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936964_937216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937328_938279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938275_938659_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938713_940528_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940677_941505_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941550_942531_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942527_942740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942736_943918_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944081_944816_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944817_947430_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947565_949479_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950094_950505_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950602_951688_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951786_952737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952733_953708_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953832_954744_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955020_955413_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955542_956493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	975915	1046178	4102182	transposase	Streptococcus_phage(14.29%)	56	NA	NA
WP_005012067.1|975915_976866_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|976946_977858_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|977918_979064_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|979083_979998_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|980069_980819_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|980818_981748_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|981991_983818_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|983900_984542_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|984764_985766_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|987602_988667_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|989464_990373_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|991860_993135_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|993288_993669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|993676_994549_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|994854_995235_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|995445_996171_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|996266_997217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997321_998371_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998508_999525_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001033_1001606_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001665_1002397_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002448_1003366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004173_1007353_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008797_1009049_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009194_1009809_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1009995_1012110_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012185_1013037_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013033_1013660_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013656_1015411_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015703_1018409_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018421_1020083_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020095_1021886_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022107_1023283_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023325_1024276_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024374_1025115_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025309_1027346_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027363_1028374_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028491_1029685_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029714_1030488_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030484_1031675_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031700_1032639_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032635_1034984_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035138_1035780_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035883_1037017_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037109_1037262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037293_1037842_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037860_1038346_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038523_1039462_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039464_1039782_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039827_1040772_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042452_1043103_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043156_1043492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043488_1044349_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044365_1044647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044720_1044984_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045227_1046178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1058396	1116827	4102182	protease,tRNA,transposase,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1058396_1059413_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1060201_1061251_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061247_1062891_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062887_1063775_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063915_1064389_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064378_1065401_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065397_1066825_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067762_1068779_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069111_1070047_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070096_1071977_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072043_1072388_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072532_1073669_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073665_1074739_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074896_1076333_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076423_1077065_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077400_1078417_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080459_1081410_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082612_1084034_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084297_1085014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085098_1085416_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085456_1085870_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085871_1086231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086273_1087818_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087901_1088732_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088766_1089921_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089963_1090836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090952_1093241_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094447_1094912_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094938_1095889_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095906_1096044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096256_1097033_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097077_1097935_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097956_1098973_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099107_1100148_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100342_1102424_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102659_1104153_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104383_1105178_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105398_1106757_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106753_1107596_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107614_1109501_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109442_1109694_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109738_1110371_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110389_1110992_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111143_1112094_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112674_1113382_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113740_1114727_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114866_1115880_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115876_1116827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1156526	1218697	4102182	tRNA,transposase	Erysipelothrix_phage(33.33%)	49	NA	NA
WP_010930198.1|1156526_1157477_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157575_1158199_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158372_1160655_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160809_1163506_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163631_1164120_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166530_1169401_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169446_1170661_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170890_1172318_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172415_1173507_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173519_1174278_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174365_1175268_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175264_1176215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176344_1177328_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177382_1178105_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179583_1180939_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181019_1183395_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183559_1185635_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185696_1186497_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186598_1187561_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187548_1188304_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188411_1190049_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190116_1190854_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190956_1191532_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191704_1192241_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192243_1192588_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192603_1193449_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193487_1194867_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194944_1195826_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195924_1196875_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196871_1197282_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197389_1198244_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198236_1199199_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199244_1200369_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200474_1201353_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201477_1202257_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202410_1203832_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204266_1205964_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206190_1207132_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207458_1208205_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208212_1209139_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209260_1210178_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210217_1211171_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211195_1211774_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213447_1214056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214133_1214487_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214570_1215560_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_076879566.1|1215762_1216713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216799_1217750_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217746_1218697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1269622	1326833	4102182	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1269622_1270573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274319_1274931_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275153_1276614_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276710_1278303_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278656_1278914_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278915_1280256_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280351_1281041_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281053_1282484_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284208_1285030_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285040_1286612_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286640_1287618_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287644_1288448_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288444_1289239_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289246_1290482_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290474_1290909_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291658_1292609_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293230_1294958_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295069_1296428_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1296720_1297671_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297711_1298782_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298804_1299683_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299854_1300826_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300988_1301831_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301992_1302673_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302666_1303836_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303832_1304864_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304907_1306149_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306183_1307716_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307796_1308420_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308450_1309062_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309097_1309568_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1309999_1311004_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311040_1312555_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312558_1313518_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313546_1314350_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314351_1315986_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316069_1317131_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317329_1317599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317602_1318127_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318542_1319493_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319489_1320524_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320632_1321271_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321565_1321793_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321915_1322629_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322873_1323824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323927_1324209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324323_1325772_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325882_1326833_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1417066	1469219	4102182	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1417066_1418017_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1418183_1418537_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418549_1418912_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418953_1419379_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419581_1420838_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421036_1422017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422166_1423408_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423506_1424457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424465_1425161_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427982_1428582_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428592_1430758_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430781_1432566_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432565_1432655_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433349_1433622_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433621_1435688_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435684_1436635_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436733_1437684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437799_1438132_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438128_1438815_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438801_1439761_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439802_1442163_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442162_1442795_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442896_1444237_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444283_1445639_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445764_1446409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446353_1446671_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446943_1447459_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447552_1447714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447729_1448485_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448823_1449030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449037_1449697_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449991_1452196_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452306_1453530_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453652_1454627_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454694_1455888_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455902_1456703_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456699_1458556_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458552_1459158_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459176_1460562_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461287_1462514_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462602_1463385_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463483_1464434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464460_1465234_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465245_1466487_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468268_1469219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1513144	1581231	4102182	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1513144_1513633_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513750_1514329_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514434_1514803_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514901_1515852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515858_1516971_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517657_1518860_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518895_1519042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519063_1521724_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1521736_1525141_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525808_1528034_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528080_1528407_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528457_1529066_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529164_1530115_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530184_1530949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1530945_1531545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531648_1532500_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532559_1533186_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533182_1534133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534231_1535344_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535333_1536335_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536440_1537952_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537948_1539253_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539364_1539925_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540192_1540747_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541202_1541418_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541672_1544270_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544266_1545454_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1546113_1546728_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1546816_1547944_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547955_1548861_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549753_1550704_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550885_1551638_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551706_1552366_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552362_1553091_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553103_1555383_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555407_1555611_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555652_1556285_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556420_1557338_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557334_1558048_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558285_1559056_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559060_1559660_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559904_1561395_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561453_1561738_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1561875_1562031_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562303_1563230_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563366_1564107_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564273_1565650_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565831_1566737_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568388_1570191_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1570317_1570959_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571057_1572008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572029_1573250_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573435_1574848_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574911_1575979_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575978_1577466_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577475_1578420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578579_1579278_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579355_1580261_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580280_1581231_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1617180	1672771	4102182	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617180_1618131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618189_1618963_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618955_1620512_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620508_1621459_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622785_1623388_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623627_1624329_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624322_1625105_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625289_1626240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626338_1627076_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627265_1628024_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628070_1629060_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629237_1630206_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631745_1632714_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632722_1633664_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634137_1635148_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635138_1636653_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636649_1637996_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1637998_1639033_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639082_1640708_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641260_1642211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642315_1643263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643316_1645131_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645123_1645798_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645927_1649002_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649015_1649315_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649629_1650253_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1650496_1651366_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651343_1652288_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652373_1653300_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653412_1654192_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654182_1655379_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655409_1656360_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656581_1657271_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657335_1658091_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658142_1659135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659144_1660098_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660213_1661176_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662577_1663006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663002_1663953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1664246_1664984_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665407_1666595_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1666598_1666979_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077069133.1|1668698_1669670_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669683_1670397_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670401_1671319_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671425_1671722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671820_1672771_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1830538	1889808	4102182	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830538_1831489_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831613_1832423_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1832623_1833574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834847_1836065_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837121_1838024_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838100_1838973_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839103_1839472_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839529_1840576_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840771_1842028_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842032_1843370_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843519_1844476_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844578_1845511_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845626_1845947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845939_1846299_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846346_1847921_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847973_1848918_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848935_1849766_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849758_1851393_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851389_1852745_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853651_1855229_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855232_1856507_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856604_1856979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858694_1859828_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859865_1860471_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860467_1861286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861357_1863982_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863968_1864223_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864289_1864871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865174_1865435_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865600_1866224_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866223_1866997_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1866993_1868202_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868227_1868701_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868774_1869725_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869823_1870774_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870872_1872222_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872987_1873743_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873835_1876718_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877040_1877466_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877493_1878642_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878638_1879145_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1879151_1880447_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1880505_1881792_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881793_1882432_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1882434_1883595_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883621_1884977_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884980_1886051_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886189_1886426_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886513_1887620_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887585_1888890_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888908_1889808_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1900048	1944371	4102182	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1900048_1900999_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901097_1902048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902247_1903333_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903348_1904110_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1904106_1905066_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1905128_1905629_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905661_1906405_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906500_1906740_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906753_1906906_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1906991_1908482_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908573_1909512_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909508_1909685_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909687_1910350_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911971_1912115_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912111_1913086_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1913252_1914203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914199_1915474_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915577_1916771_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916767_1917421_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917417_1918854_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918841_1919201_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920015_1920156_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920173_1921124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922169_1924035_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924292_1925813_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925900_1926551_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1927499_1928795_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928816_1929701_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929799_1930675_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930664_1931021_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931151_1932126_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932255_1932435_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932532_1933057_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933067_1933904_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934016_1934388_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934384_1934936_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934951_1936643_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936691_1937372_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937619_1938084_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938253_1939183_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939195_1939843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939916_1941734_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941817_1942768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943420_1944371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	1974144	2038513	4102182	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974144_1975095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975316_1976267_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976365_1977331_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977468_1978368_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980962_1982450_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982460_1983657_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983729_1985049_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985045_1985921_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985951_1987100_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987117_1987432_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987453_1988176_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988175_1988994_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1988998_1989526_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989531_1990788_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991146_1992286_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992363_1993236_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994106_1995057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995016_1995652_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996011_1997334_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997652_1998474_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999898_2000471_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000510_2002340_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002302_2003361_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003398_2003860_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003944_2004691_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006181_2009412_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009478_2010810_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011062_2011437_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011539_2012718_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012728_2013319_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013429_2014236_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014261_2015056_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016056_2017031_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017189_2017702_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017858_2018830_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020574_2021381_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2021377_2022679_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2022629_2023394_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023507_2024278_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024362_2025550_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025622_2025997_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2026097_2027360_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027356_2028214_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028386_2029388_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029839_2030790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2032305_2033505_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033873_2034110_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034173_2034341_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2034454_2036260_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2036513_2037464_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037562_2038513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	2170042	2227321	4102182	tRNA,transposase	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2170042_2170993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171091_2173086_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173145_2174111_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174100_2176962_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176964_2177471_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177575_2178784_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178785_2179724_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179885_2180359_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180355_2181306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181416_2181857_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181985_2183215_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183253_2184075_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184128_2185280_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185371_2185860_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188410_2190960_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191030_2193604_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193869_2194070_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194101_2194263_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194320_2194659_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194807_2195758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196532_2197201_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2197182_2199198_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2199380_2200130_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200142_2201006_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201009_2202425_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202558_2203287_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203425_2203626_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203801_2204200_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204223_2205624_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205742_2206495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2206783_2207383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207487_2208267_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208263_2209148_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209165_2209945_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209929_2210688_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2210813_2211461_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211728_2212745_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212842_2213883_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214017_2215310_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216669_2217053_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217070_2217658_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2217695_2218646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2218744_2219305_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2219301_2219847_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2220042_2221071_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2221111_2222452_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2222560_2223565_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2223671_2226272_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_005012067.1|2226370_2227321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	2474953	2533197	4102182	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2474953_2475904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476383_2477040_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2477054_2478722_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2478724_2479354_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479565_2480660_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480804_2481617_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2481620_2483324_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2483374_2484505_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484691_2485768_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485849_2486500_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486514_2487918_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488201_2489020_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2489016_2489721_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490620_2491736_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491769_2492144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492166_2493324_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493336_2493570_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494204_2497174_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497188_2497398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497549_2498179_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2498175_2500266_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500289_2500970_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500966_2501527_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501533_2502631_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502783_2503377_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503373_2504666_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504679_2505222_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505231_2506068_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506101_2507163_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507204_2508257_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508272_2508575_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508716_2509667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2509845_2511540_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511536_2512622_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512669_2513569_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513579_2514224_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515245_2518488_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518498_2519653_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519879_2520842_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2520940_2521891_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521989_2522940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522949_2523639_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523698_2524136_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524181_2525075_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525122_2526295_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526291_2527446_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2527642_2527993_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527982_2528417_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528433_2529384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529531_2529999_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529979_2531137_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531202_2532129_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532246_2533197_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	2575475	2641975	4102182	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575475_2576426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576795_2577368_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577370_2578381_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578373_2578874_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578884_2579226_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2579237_2580029_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580045_2580315_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580337_2581126_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581172_2582189_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582405_2583848_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584026_2585646_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585766_2587587_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587665_2589198_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2589231_2590878_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590947_2591970_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591987_2593121_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593123_2593813_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593812_2594598_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594641_2595406_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595444_2596866_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596931_2597636_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597683_2598103_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598115_2598523_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598706_2599417_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599543_2599834_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599851_2600334_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604839_2605994_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606299_2607316_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607562_2608351_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608417_2609098_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609094_2609865_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609963_2610914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610969_2611887_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611897_2613076_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613095_2614091_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615679_2616288_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616275_2617316_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617333_2618296_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618292_2619486_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619482_2620280_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620305_2621292_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621310_2623350_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2623551_2624232_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624245_2625157_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625153_2625732_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625870_2626776_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626783_2630203_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630190_2632791_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633746_2634379_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634772_2635531_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2635527_2636730_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636917_2637868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638775_2639921_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639907_2640663_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640779_2640959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641024_2641975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	2805580	2868024	4102182	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	55	NA	NA
WP_023853639.1|2805580_2806531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2806859_2807465_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2807518_2808832_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2808906_2809377_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2809376_2810165_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2810175_2811828_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2811915_2812866_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2814027_2814534_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2814530_2815295_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2815310_2815595_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2815659_2816649_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2816820_2817750_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2817721_2818408_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2818441_2818987_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2819031_2820297_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2820293_2821196_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2822377_2823322_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2823416_2824934_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2824975_2826604_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2826711_2827593_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2830705_2831080_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2831104_2831443_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2831486_2833121_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2833159_2834506_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2834613_2836035_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2836104_2836689_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2836791_2837742_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2837876_2838983_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2838993_2840091_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2840235_2841441_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2841447_2841969_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2841965_2842457_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2842453_2842705_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2842685_2843171_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2843306_2846768_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2846785_2847670_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2847679_2848111_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2848357_2848861_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2848938_2850339_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2850413_2851289_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2851285_2852293_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2852760_2853066_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2853156_2853747_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2853937_2854954_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2855145_2857482_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2857564_2857999_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931070.1|2858097_2859048_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859044_2859839_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859870_2860575_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860649_2861450_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861446_2861854_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861850_2862492_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862484_2864485_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865745_2867077_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867073_2868024_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	2882500	2923859	4102182	protease,transposase	uncultured_Mediterranean_phage(40.0%)	30	NA	NA
WP_010930800.1|2882500_2883451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2883781_2887603_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887759_2888428_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888432_2890106_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890124_2891444_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891448_2893764_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893819_2895988_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2895984_2901174_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901263_2901578_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901805_2902051_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902145_2902664_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902763_2903969_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904084_2905482_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905598_2906177_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906249_2907641_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907808_2908759_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909039_2909660_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909656_2910070_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910066_2911110_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911165_2911354_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911363_2912128_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912218_2912875_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912966_2913725_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913750_2915352_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915552_2916557_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916657_2916921_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917038_2917815_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918405_2919356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921739_2922852_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2922908_2923859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	2954245	3008476	4102182	transposase	Planktothrix_phage(16.67%)	49	NA	NA
WP_005012067.1|2954245_2955196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2955316_2956213_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958490_2960716_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960880_2961969_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961925_2962579_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962626_2963424_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963955_2964906_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2964980_2966135_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966191_2967142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967240_2967546_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967574_2968009_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968010_2969255_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969251_2969962_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969976_2970888_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971250_2971655_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971651_2972110_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2972116_2973025_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2973021_2973888_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973874_2974702_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974712_2975840_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976917_2978156_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978197_2979460_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979466_2980219_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980270_2980456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980731_2981196_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981227_2981887_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982031_2984140_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984136_2985087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985190_2985811_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2985902_2986655_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987789_2988914_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988959_2989328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989569_2990520_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991555_2992098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2992295_2992466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992483_2993434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2993430_2994396_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994465_2995302_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995814_2996924_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2996985_2997936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|2998128_2998911_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|2998924_2999674_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|2999701_3001048_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3001073_3002003_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3002118_3003024_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3003041_3004241_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3004313_3005006_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3005054_3007481_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3007525_3008476_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	3182354	3244588	4102182	protease,transposase	Xanthomonas_phage(33.33%)	51	NA	NA
WP_005012067.1|3182354_3183305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3183313_3183862_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3183858_3184467_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3184649_3185120_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3185126_3186386_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3186438_3187251_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3187365_3187920_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_023998380.1|3187929_3188919_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3189098_3189818_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3189834_3192570_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3192749_3193736_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3193864_3194272_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3194383_3195307_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3195535_3196720_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3196908_3198135_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3198139_3198961_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3198973_3199924_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3199920_3201327_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3201323_3202397_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3202393_3203587_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3203583_3205116_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3205112_3206282_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3206271_3209109_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3209105_3210836_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3210832_3211111_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3211110_3212205_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3212213_3212642_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3213444_3215253_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3215292_3216372_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3216368_3217562_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3217711_3217990_+	SWIB/MDM2 domain-containing protein	NA	NA	NA	NA	NA
WP_003814593.1|3218319_3218712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3225436_3225913_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3226065_3227178_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3227245_3227806_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3227829_3228162_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3228145_3229834_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3229953_3230742_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3231449_3232400_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3232844_3233156_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3233155_3233686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3233848_3234799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3235088_3235553_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3235567_3237073_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3237329_3238934_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3238989_3239895_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3240335_3241286_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3241367_3241949_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3242373_3242679_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3242692_3244027_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3244048_3244588_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 28
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	3263011	3314930	4102182	tRNA,transposase,holin	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3263011_3263347_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3263346_3264189_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3264287_3265238_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3265302_3266274_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3266337_3267357_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3267358_3268732_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3269009_3269690_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3269702_3271829_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3271825_3272920_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3272934_3274194_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3274213_3275938_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3276176_3276929_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3277067_3278018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3278330_3279809_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3279815_3280925_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3280936_3281617_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3281638_3282394_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3282529_3283414_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3283501_3284083_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3284343_3284643_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3284794_3285274_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3285993_3287430_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3287426_3287930_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3287945_3288896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3289423_3290197_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3290329_3291340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3291491_3293147_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3293201_3293543_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3293556_3294996_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3295128_3295944_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3296137_3297088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3298475_3299423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3299649_3300390_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3300475_3301426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3302867_3304439_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3304771_3306625_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3306669_3309234_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3309652_3310603_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3313468_3313963_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3313979_3314930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	3376833	3430574	4102182	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3376833_3377784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378188_3378833_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378857_3379442_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379542_3380160_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380162_3381878_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381874_3382183_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3382199_3382817_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382861_3383164_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383264_3384119_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384306_3384531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384700_3384973_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385390_3385798_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386167_3386962_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387062_3388298_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388366_3389383_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3389394_3390771_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390767_3391964_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391960_3393499_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393495_3394755_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396695_3397646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3398412_3399507_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399499_3400834_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400787_3401471_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3401496_3402660_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3402656_3403658_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403657_3404530_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404526_3405276_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405272_3406064_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406060_3407200_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3407475_3408261_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408294_3409077_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409080_3409470_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3410609_3411473_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3411508_3412597_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412593_3413544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3413897_3416876_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417802_3418681_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420629_3421580_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421576_3422044_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3422086_3422857_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3422877_3423678_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423688_3425098_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3425192_3425978_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3426217_3427234_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3427341_3427734_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427871_3428552_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3428556_3429528_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429623_3430574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	3436729	3496027	4102182	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3436729_3438493_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438604_3439483_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439595_3440411_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3440414_3440666_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3440750_3441767_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3442097_3442319_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444679_3445597_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3446094_3447303_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3447382_3448954_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3449071_3450007_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3450195_3451140_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3451707_3457425_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3457430_3458558_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458613_3459240_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3459511_3460528_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460623_3461334_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3461330_3462320_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3462415_3464047_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3464049_3464787_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3464942_3465815_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3466083_3467304_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3467300_3467960_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3468031_3468664_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468693_3469212_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3469222_3470332_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3470378_3471233_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3471234_3472137_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3473359_3474310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3476064_3477054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3477050_3477209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3477229_3478018_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3478014_3479046_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3479064_3479628_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479683_3481204_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481467_3482172_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3482179_3482917_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3483022_3483397_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483439_3484729_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484725_3485895_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3485891_3486731_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486790_3487726_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487738_3488689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488787_3489750_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489781_3490141_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3490265_3491168_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3491169_3492942_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3492976_3493753_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3495076_3496027_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	3510965	3569038	4102182	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3510965_3511916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3512044_3513178_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3513221_3514127_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3514129_3515830_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3515826_3516747_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3516754_3517732_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3517790_3518825_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3520799_3521036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3521162_3522026_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3522114_3522936_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3523015_3523753_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3523749_3524742_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3524855_3525518_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525562_3526711_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3529034_3529985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3530325_3531276_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3531374_3532325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532621_3533119_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3533161_3534937_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3534944_3535811_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3535817_3536552_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3537721_3538516_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3538805_3539396_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3539429_3540758_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3540832_3541978_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3542089_3543088_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3543050_3543485_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3545001_3545886_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545882_3547088_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3547084_3547945_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3548057_3549848_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3549888_3550554_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3550554_3550863_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3551028_3552315_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3553748_3554699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3556650_3557865_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3557970_3558960_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3558956_3559565_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3559577_3560207_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3560203_3560824_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3560855_3561647_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3562498_3562954_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3562972_3563899_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3563952_3565239_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3566169_3567042_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3567038_3567989_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3568087_3569038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011238	Bordetella pertussis strain H911 chromosome, complete genome	4102182	4024353	4077785	4102182	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4024353_4025304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4025473_4026700_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4026899_4027766_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4027758_4028721_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4028821_4029772_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4029870_4030821_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4030919_4031870_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4031866_4033360_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4033356_4036464_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4036460_4039529_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4039525_4040776_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4040956_4041718_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4041750_4042401_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4042403_4043243_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4043483_4044227_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4044309_4044657_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4044754_4045597_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4045641_4046529_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4046555_4046744_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4046841_4048299_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4048285_4049812_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4049830_4050298_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4050297_4051320_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4051440_4052160_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4052235_4053336_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4053337_4054528_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4054647_4055664_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4055982_4056654_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4056650_4057559_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4057770_4058418_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4062269_4063346_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4063356_4064166_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4064255_4065029_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4065211_4066162_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4066050_4067073_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4067062_4068217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4068256_4069669_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4069793_4070660_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4070661_4071486_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4071482_4072244_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4072324_4073011_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4073184_4074192_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4074188_4074968_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4075025_4076288_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4076834_4077785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
