The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	27282	70036	4106500	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	232666	307010	4106500	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	DUF4401 domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	489374	607269	4106500	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|489374_490325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490423_491374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492096_493371_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493457_494540_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494550_495363_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495399_495726_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495730_496291_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496531_497524_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497542_498538_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498553_499930_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499922_502304_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502320_502710_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502836_503067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503171_504122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504220_505171_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505167_506040_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506970_508257_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508310_509237_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509255_509711_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|510562_511354_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511385_512006_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512002_512632_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512644_513253_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513249_514239_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514344_515559_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517510_518461_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519894_521181_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|521346_521655_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|521676_522321_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|522361_524152_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524264_525125_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|525121_526327_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526323_527208_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528724_529159_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529121_530120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530231_531377_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531451_532780_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532813_533404_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533693_534488_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535657_536392_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536398_537265_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537272_539048_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539090_539588_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539884_540835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540933_541884_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542224_543175_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545498_546647_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|546691_547315_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547467_548460_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548456_549194_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|549273_550095_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550183_551047_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551173_551410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553384_554419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|554477_555455_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555462_556383_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556379_558080_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558082_558988_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559031_560165_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560293_561244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561342_563412_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563454_565557_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565863_566940_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567015_567900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568082_568505_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568514_569915_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569957_570863_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570961_572503_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572537_573077_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573089_573560_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573697_573940_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574056_574938_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575010_575331_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852617.1|576182_577133_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578456_579233_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579267_581040_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581041_581944_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582068_582428_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582459_583422_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583520_584471_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584483_585419_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585478_586318_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586314_587484_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587480_588770_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588812_589187_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|589301_590030_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590037_590742_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591005_592526_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592581_593145_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593163_594195_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594191_594980_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|595155_596145_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597901_598852_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600074_600977_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600978_601833_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601879_602989_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602999_603518_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603547_604180_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604251_604911_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|604907_606047_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606396_607269_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	611683	675516	4106500	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611683_612700_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612971_613598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|613653_614781_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614786_620504_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621071_622016_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622204_623140_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623257_624829_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624908_626117_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626614_627532_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629892_630114_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630444_631461_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631545_631797_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631800_632616_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632728_633607_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633718_635482_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635597_636938_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638007_639432_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639431_640133_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641637_642588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642683_643655_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643659_644340_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644477_644870_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644977_645994_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646233_647019_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647113_648523_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648533_649334_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649354_650125_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|650167_650635_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650631_651582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653530_654409_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655335_658314_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658667_659618_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659614_660703_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660738_661602_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|662741_663131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|663134_663917_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663950_664736_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665011_666151_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666147_666939_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666935_667685_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667681_668554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668553_669555_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669551_670715_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|670740_671424_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671377_672712_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672704_673799_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|674565_675516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	694427	771736	4106500	tRNA,integrase,protease,transposase	Bacillus_phage(20.0%)	58	741564:741582	761452:761470
WP_023995489.1|694427_695378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695476_696952_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698539_699427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699429_700371_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700416_701982_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703759_705085_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705267_706725_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706688_707186_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707216_708188_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|708240_708672_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708801_709470_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710198_711302_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|711407_712682_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712693_713719_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713720_715091_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|715091_716228_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716274_718200_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718196_719318_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719314_720469_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720465_721596_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721603_723169_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723175_724558_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724836_725448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725539_726955_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726972_727683_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727679_729002_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729081_731043_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731168_732482_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732590_733889_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734071_734980_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734989_735199_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735210_736890_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736991_737945_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738035_738863_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738861_740748_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740744_741344_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741392_742292_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741564:741582	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742500_743451_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743573_744188_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744316_744913_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744909_745692_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745764_746856_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747135_748263_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748604_749651_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|750161_752918_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752919_755871_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755886_757098_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|757094_757295_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|757281_758232_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758248_758743_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758746_759004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759547_760459_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760540_760825_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761608_762559_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761452:761470	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762977_765542_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765586_767440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|767772_769344_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770785_771736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	1018718	1120062	4106500	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1018718_1019834_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1019934_1020753_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1020850_1021462_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1021621_1022998_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1023060_1023519_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1023603_1024299_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1024360_1024642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1025204_1025957_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1026001_1027078_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1027074_1028025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028127_1028790_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028884_1029055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029407_1030409_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030411_1031608_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031628_1032432_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1032512_1032809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032839_1033403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033443_1034301_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034308_1035058_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035079_1035952_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035980_1036760_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036793_1037591_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1040245_1040638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040631_1041492_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041495_1042458_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043234_1043924_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044784_1045735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046084_1046954_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047024_1047720_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047709_1048219_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048215_1049436_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049383_1050286_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051172_1052459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052497_1053871_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053909_1054611_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054909_1055899_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055999_1056461_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056476_1057025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1057166_1058642_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058747_1059839_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059842_1060625_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060634_1061423_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062548_1062983_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062979_1063990_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064033_1064960_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065246_1065615_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1065831_1066782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1066826_1069253_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1069301_1069994_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070066_1071266_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071283_1072189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072304_1073234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073259_1074606_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1074618_1075383_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1075396_1076179_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076371_1077322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1077383_1078493_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1079005_1079842_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1079968_1080877_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080873_1081824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1082209_1082752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083787_1084738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1084979_1085348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1085393_1086518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1087652_1088393_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1088496_1089117_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1089220_1090171_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090167_1092276_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092420_1093080_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093111_1093576_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093851_1094037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094088_1094841_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094847_1096110_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096151_1097390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098467_1099595_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099605_1100433_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100419_1101286_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102652_1103057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103419_1104331_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104345_1105056_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105052_1106297_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106298_1106733_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106761_1107067_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1107165_1108116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1108172_1109321_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109401_1110352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110883_1111681_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111728_1112382_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112338_1113427_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113591_1115817_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118094_1118991_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1119111_1120062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	1150448	1221419	4106500	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1150448_1151399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1151455_1152568_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1154951_1155902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156492_1157269_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157386_1157650_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157750_1158755_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158955_1160557_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160582_1161341_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161432_1162089_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162179_1162944_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162953_1163142_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163197_1164241_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164237_1164651_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164647_1165268_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165548_1166499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166666_1168058_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168130_1168709_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168825_1170223_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170338_1171544_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171643_1172162_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172256_1172502_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172729_1173044_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1173142_1178323_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178319_1180488_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1180543_1182859_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1182863_1184183_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184201_1185875_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185879_1186548_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186704_1190526_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1190856_1191807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191828_1192974_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193122_1194052_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194048_1195137_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195133_1195937_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195933_1196665_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196722_1198012_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198108_1198711_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203264_1203603_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204310_1204577_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206283_1207234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207230_1208562_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1209822_1211823_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211815_1212457_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212453_1212861_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212857_1213658_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213732_1214437_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214468_1215263_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215259_1216210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216308_1217259_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217357_1217792_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217874_1220211_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220402_1221419_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	1268813	1349688	4106500	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1268813_1269764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1269760_1270711_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1270971_1272000_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1272079_1273378_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1273374_1273956_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1274268_1278315_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1278555_1286217_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1286213_1287164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1288303_1288777_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1288916_1289537_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1289672_1290473_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1290527_1291619_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1291640_1292084_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1292112_1292745_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1292855_1293272_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1293264_1293957_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1294063_1294438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1294514_1295324_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1295419_1296364_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1296402_1297374_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1297464_1297902_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1297960_1298842_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1299845_1300706_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1300738_1302121_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1302117_1303137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1303509_1304004_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1304011_1304752_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1304832_1306437_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1306476_1307265_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1307390_1309556_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1310436_1311249_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1311261_1311570_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1311687_1313418_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1313419_1314622_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1314694_1315363_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1315484_1315952_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1316087_1317470_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1317466_1318591_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1318587_1321224_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1321639_1322590_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1326336_1326948_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1327170_1328631_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1328727_1330320_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1330673_1330931_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1330932_1332273_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1332368_1333058_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1333070_1334501_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1336225_1337047_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1337057_1338629_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1338657_1339635_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1339661_1340465_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1340461_1341256_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1341263_1342499_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1342512_1342926_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1343675_1344626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345247_1346975_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347086_1348445_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1348737_1349688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	1469079	1521232	4106500	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1469079_1470030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1470196_1470550_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470562_1470925_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470966_1471392_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471594_1472851_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1473049_1474030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1474179_1475421_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1475519_1476470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1476478_1477174_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479995_1480595_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480605_1482771_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482794_1484579_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484578_1484668_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1485362_1485635_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485634_1487701_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1487697_1488648_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1488746_1489697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1489812_1490145_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1490141_1490828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1490814_1491774_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1491806_1494176_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1494175_1494808_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1494909_1496250_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1496296_1497652_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1497942_1498179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1498366_1498684_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1498956_1499472_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1499742_1500498_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1500836_1501043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1501050_1501710_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1502004_1504209_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1504319_1505543_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1505665_1506640_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1506707_1507901_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1507915_1508716_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1508712_1510569_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1510565_1511171_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1511189_1512575_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1513300_1514527_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1514615_1515398_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1515496_1516447_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1516473_1517247_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1517258_1518500_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1520281_1521232_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	1565157	1633241	4106500	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1565157_1565646_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1565763_1566342_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1566447_1566816_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1566914_1567865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1567871_1568984_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1569670_1570873_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1571076_1573737_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1573749_1577154_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1577821_1580047_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1580093_1580420_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1580470_1581079_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1581177_1582128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1582197_1582962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1582958_1583495_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1583661_1584513_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1584572_1585199_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1585195_1586146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1586244_1587357_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1587346_1588348_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1588453_1589965_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1589961_1591266_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1591377_1591938_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1592205_1592760_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1593215_1593431_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1593685_1596283_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1596279_1597467_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1598123_1598738_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1598826_1599948_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1599965_1600871_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1601763_1602714_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1602895_1603648_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1603716_1604376_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1604372_1605101_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1605113_1607393_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1607417_1607621_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1607662_1608295_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1608430_1609348_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1609344_1610058_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1610295_1611066_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1611070_1611670_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1611914_1613405_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1613463_1613748_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1614313_1615240_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1615376_1616117_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1616283_1617660_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1617841_1618747_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1620398_1622201_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1622318_1622969_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1623067_1624018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1624039_1625260_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1625445_1626858_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1626921_1627989_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1627988_1629476_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1629485_1630430_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1630589_1631288_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1631365_1632271_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1632290_1633241_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	1669190	1724781	4106500	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1669190_1670141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1670199_1670973_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1670965_1672522_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1672518_1673469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1674795_1675398_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1675637_1676339_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1676332_1677115_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1677299_1678250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1678348_1679086_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1679275_1680034_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1680080_1681070_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1681247_1682216_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1683755_1684724_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1684732_1685674_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1686147_1687158_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1687148_1688663_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1688659_1690006_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1690008_1691043_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1691092_1692718_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1693270_1694221_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1694325_1695273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1695326_1697141_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1697133_1697808_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1697937_1701012_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1701025_1701325_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1701639_1702263_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1702506_1703376_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1703353_1704298_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1704383_1705310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1705422_1706202_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1706192_1707389_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1707419_1708370_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1708591_1709281_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1709345_1710101_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1710152_1711145_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1711154_1712108_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1712223_1713186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1714587_1715016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1715012_1715963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1716256_1716979_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1717417_1718605_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1718608_1718959_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1720708_1721680_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1721693_1722407_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1722411_1723329_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1723435_1723732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1723830_1724781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	1958595	2028247	4106500	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1958595_1961253_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1961330_1962533_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1962529_1963042_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1963164_1963602_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1963878_1964829_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1964927_1965878_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1966041_1967937_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1968050_1968218_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1968281_1968518_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1968886_1970038_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1971601_1972552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1973003_1974005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1974177_1975035_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1975031_1976294_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1976394_1976769_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1976841_1978029_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1978113_1978884_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1978997_1979762_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1979712_1981014_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1981010_1981817_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1983561_1984533_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1984689_1985202_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1985360_1986335_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1987335_1988130_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1988155_1988962_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1989072_1989663_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1989673_1990852_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1990954_1991329_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1991581_1992913_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1992979_1996210_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1997700_1998447_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1998531_1998993_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1999030_2000089_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2000051_2001881_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2001920_2002493_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2003917_2004739_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2005057_2006380_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2006739_2007375_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2007334_2008285_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2009155_2010028_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2010105_2011245_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2011603_2012860_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2012865_2013393_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2013397_2014216_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2014215_2014938_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2014959_2015274_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2015291_2016440_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2016470_2017346_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2017342_2018662_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2018734_2019931_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2019941_2021429_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2024023_2024923_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2025060_2026026_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2026124_2027075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2027296_2028247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	2039743	2089139	4106500	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2039743_2040694_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2041831_2042128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2042302_2043655_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2043797_2044814_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2046793_2047807_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2047893_2048799_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2048955_2049300_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2049457_2049916_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2049929_2052146_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2052142_2053204_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2053232_2054207_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2054158_2054977_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2054989_2055598_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2055772_2056168_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2056186_2057626_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2057654_2058002_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2058020_2058971_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2059623_2060574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2060657_2062475_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2062548_2063196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2063208_2064138_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2064307_2064772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2065019_2065700_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2065748_2067440_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2067455_2068007_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2068003_2068375_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2068487_2069324_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2069334_2069859_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2069956_2070136_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2070265_2071240_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2071370_2071727_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2071716_2072592_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2072690_2073575_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2073596_2074892_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2075840_2076491_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2076578_2078099_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2078356_2080222_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2081267_2082218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2082235_2082376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2083190_2083550_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2083537_2084974_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2084970_2085624_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2085620_2086814_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2086917_2088192_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2088188_2089139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	2100343	2141034	4106500	tRNA,protease,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2100343_2101294_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2101392_2102343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2102302_2102716_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2103000_2103300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2103709_2105992_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2106457_2106652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2106677_2108708_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2108727_2108940_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2109217_2109757_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2109870_2111166_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2111242_2112400_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2112583_2113483_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2113501_2114806_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2114771_2115878_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2115965_2116202_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2116340_2117411_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2117414_2118770_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2118796_2119954_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2119959_2120598_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2120599_2121895_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2121944_2123231_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2123246_2123753_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2123749_2124898_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2124925_2125351_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2125673_2128556_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2128648_2129404_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2130169_2131519_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2131617_2132568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2132666_2133617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2133690_2134164_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2134189_2135398_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2135394_2136168_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2136167_2136791_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2136956_2137217_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2137520_2138102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2138168_2138423_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2138409_2141034_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 17
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	2168817	2234366	4106500	tRNA,protease,transposase	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2168817_2169768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2169968_2170778_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005013747.1|2170902_2171853_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2171849_2172743_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2172867_2173062_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2173061_2173403_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2173412_2175275_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2175404_2175917_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2175919_2176243_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2176244_2176655_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2176692_2177904_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2177921_2178434_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2178649_2179141_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2179393_2181430_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2181507_2182710_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2182838_2183489_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2185046_2185997_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2186567_2186780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2186797_2187529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2187563_2188205_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2188197_2188866_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2191078_2191855_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2191876_2193034_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2193030_2193462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2193458_2194256_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2194275_2194677_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2194743_2195715_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2195780_2197004_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2197231_2198182_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2198305_2200759_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2200947_2202252_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2202356_2203010_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2203012_2204323_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2204501_2205080_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2205191_2205392_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2205737_2206304_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2206387_2206591_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2206897_2207218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2207259_2207541_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2207615_2208872_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2209254_2209584_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2211154_2211976_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2211975_2213115_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2213121_2214018_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2214032_2215940_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2216299_2218912_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2218964_2221265_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2221261_2222470_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2222731_2223106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2223102_2224053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2224151_2226146_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2226205_2227171_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2227160_2230022_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2230024_2230531_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2230635_2231844_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2231845_2232784_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2232945_2233419_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2233415_2234366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	2320544	2384122	4106500	protease,transposase	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2320544_2321495_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2321796_2322273_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2322896_2324534_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2324564_2325878_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2326011_2326329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2326429_2327752_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2327748_2328699_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2328797_2329748_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2330277_2331300_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2331328_2332159_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2332175_2333873_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2333937_2335014_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2335173_2336037_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2336067_2336637_+	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930841.1|2336653_2337505_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2338562_2339444_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2339518_2340508_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2340570_2341521_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2341583_2342441_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2342500_2342989_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2344561_2345752_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2345748_2347335_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2347353_2348421_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2348525_2350070_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2350489_2352064_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997180.1|2352180_2353188_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2353184_2354024_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2354028_2355666_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2355662_2356613_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2356755_2358030_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2358059_2358350_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2358422_2359436_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2359455_2360718_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2360720_2361644_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2361640_2363134_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2363144_2364077_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2364258_2365584_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930859.1|2365618_2366974_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2367034_2368555_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2368709_2369441_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853662.1|2369538_2370849_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2370864_2371776_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2371766_2372360_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2372421_2372808_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2372819_2373290_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2373301_2373925_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2373945_2376693_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2383171_2384122_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	2529063	2587307	4106500	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2529063_2530014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2530493_2531150_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2531164_2532832_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2532834_2533464_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2533675_2534770_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2534914_2535727_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2535730_2537314_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2537484_2538615_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2538801_2539878_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2539959_2540610_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2540624_2542028_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2542311_2543130_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2543126_2543831_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2544730_2545846_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2545879_2546254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2546276_2547434_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2547446_2547680_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2548314_2551284_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2551298_2551508_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2551659_2552289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2552285_2554343_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2554399_2555080_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2555076_2555637_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2555643_2556741_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2556893_2557487_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2557483_2558776_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2558789_2559332_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2559341_2560178_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2560211_2561273_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2561314_2562367_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2562382_2562685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2562826_2563777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2563955_2565650_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2565646_2566732_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2566779_2567679_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2567689_2568334_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2569355_2572598_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2572608_2573763_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2573989_2574952_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2575050_2576001_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2576099_2577050_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2577059_2577749_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2577808_2578246_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2578291_2579185_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2579232_2580405_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2580401_2581556_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2581752_2582103_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2582092_2582527_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2582543_2583494_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2583641_2584109_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2584089_2585247_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2585312_2586239_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2586356_2587307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	2629587	2696087	4106500	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629587_2630538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630907_2631480_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2631482_2632493_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2632485_2632986_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632996_2633338_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2633406_2634141_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2634157_2634427_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2634449_2635238_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2635284_2636301_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2636517_2637960_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2638138_2639758_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639878_2641699_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641777_2643310_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2643343_2644990_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2645059_2646082_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2646099_2647233_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2647235_2647925_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647924_2648710_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648753_2649518_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649556_2650978_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2651043_2651748_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651795_2652215_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2652227_2652635_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652818_2653529_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653655_2653946_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653963_2654446_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658951_2660106_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2660411_2661428_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661674_2662463_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2662529_2663210_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2663206_2663977_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2664075_2665026_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2665081_2665999_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2666009_2667188_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2667207_2668203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669791_2670400_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2670387_2671428_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2671445_2672408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2672404_2673598_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673594_2674392_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2674417_2675404_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2675422_2677462_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2677663_2678344_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2678357_2679269_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2679265_2679844_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679982_2680888_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680895_2684315_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2684302_2686903_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687858_2688491_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688884_2689643_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2689639_2690842_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2691029_2691980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692887_2694033_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2694019_2694775_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694891_2695071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2695136_2696087_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	2878490	3029196	4106500	tRNA,holin,transposase	uncultured_Mediterranean_phage(16.67%)	118	NA	NA
WP_010929956.1|2878490_2879441_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2879539_2880421_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2880498_2881878_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2881916_2882762_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2882777_2883092_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2883124_2883661_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2883833_2884409_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2884511_2885249_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2885316_2886954_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2887061_2887817_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2887804_2888767_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2888874_2889669_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2889730_2891806_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2891970_2894346_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2894426_2895782_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2897260_2897983_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2898037_2899021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2899150_2900101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2900097_2901000_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2901087_2901846_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901858_2902950_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2903047_2904475_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904704_2905919_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905964_2908835_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2911245_2911734_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911859_2914556_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914710_2916993_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2917157_2917790_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2917888_2918839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918885_2919440_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2919507_2920353_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2920422_2921391_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2921390_2923187_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930196.1|2925086_2929013_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929748_2932979_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2933260_2934088_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2934121_2934817_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934809_2936090_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2936099_2937077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2937058_2938759_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938861_2939965_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939995_2940751_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940757_2942278_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2942320_2942623_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942619_2943252_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2943330_2945196_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2945192_2945987_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2946015_2947131_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2948035_2948914_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948913_2949738_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949905_2950856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2951068_2953918_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953899_2954628_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954768_2956232_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2956228_2956600_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956617_2957931_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957967_2958426_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2958538_2959489_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2959485_2960499_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960638_2961625_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961983_2962691_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2963271_2964222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2964373_2964976_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964994_2965627_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965671_2965923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965864_2967751_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2967769_2968612_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2968608_2969967_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2970187_2970982_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2971212_2972706_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2972941_2975023_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2975217_2976258_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2976392_2977409_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2977430_2978288_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2978332_2979109_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2979476_2980427_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2980453_2980918_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2982124_2984413_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2984529_2985402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2985444_2986599_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986633_2987464_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987547_2989092_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2989134_2989494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2989495_2989909_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989949_2990267_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2990351_2991068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2991331_2992753_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2995425_2996376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2996355_2996610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996948_2997965_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2998300_2998942_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2999032_3000469_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000626_3001700_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001696_3002833_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002977_3003322_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3003388_3005269_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3005318_3006254_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006586_3007603_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3008540_3009968_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009964_3010987_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010976_3011450_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011590_3012478_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3012474_3014118_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|3014114_3015122_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015952_3016969_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3017068_3017701_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017709_3018099_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3018151_3019204_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3020067_3020832_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA	NA
WP_003811919.1|3020905_3021406_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3021420_3023478_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3023504_3023798_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023899_3024847_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024859_3025735_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025855_3026416_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3026450_3026774_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3027209_3027947_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3028245_3029196_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	3050147	3190715	4106500	transposase	Bacillus_virus(11.11%)	114	NA	NA
WP_010929969.1|3050147_3051098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3051196_3052147_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3052189_3053365_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053586_3055377_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3055389_3057051_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3057063_3059769_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3060061_3061816_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061812_3062439_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3062435_3063287_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3063416_3065477_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065663_3066278_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3066423_3066675_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066744_3068127_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3068123_3071303_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3072110_3073028_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3073079_3073811_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073870_3074443_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075951_3076968_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3077105_3078155_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3078259_3079210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3079305_3080031_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3080241_3080622_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080927_3081800_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081807_3082188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3082341_3083616_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3085103_3086012_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086809_3087874_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_003821528.1|3089710_3090745_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090934_3091576_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091658_3093485_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093728_3094658_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094657_3095407_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3095478_3096393_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3096412_3097558_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097618_3098530_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098610_3099561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3099659_3100244_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3100278_3101268_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3101264_3102206_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3102202_3103423_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3103465_3103780_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3103971_3104331_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3104332_3106048_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3106235_3106907_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3106921_3108250_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3108246_3109146_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3109232_3110318_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3110310_3111441_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3111443_3114125_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3114495_3115077_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3115202_3115928_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3115924_3116602_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3116817_3117999_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3118771_3118954_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3118983_3119934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3120063_3120456_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120732_3121644_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121768_3122743_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122739_3123690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123788_3124874_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124971_3125382_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3125997_3127911_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3128046_3130659_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130660_3131395_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131558_3132740_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132736_3132949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132945_3133926_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133971_3134799_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134948_3136763_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136817_3137201_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3137197_3138148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3138260_3138512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3138705_3138921_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3139017_3140136_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3140255_3140468_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140627_3140849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140901_3141852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3143028_3144399_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3144431_3145223_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3145235_3146291_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3146316_3147192_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3147297_3147546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147580_3149035_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3149031_3149553_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149581_3150934_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3151157_3154046_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3156190_3157492_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3157506_3158223_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3158504_3159185_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3159712_3160372_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160770_3162603_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162599_3163550_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164713_3166429_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3166439_3166931_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3167003_3168020_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3168187_3168967_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168985_3169513_-	lipoprotein	NA	NA	NA	NA	NA
WP_005019401.1|3169511_3169718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814002.1|3169806_3170076_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3170166_3172326_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3172446_3173166_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3173162_3174113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3174253_3175471_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3175464_3176076_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3176709_3177687_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3177830_3178577_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3178598_3179045_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3179832_3182064_+	BCCT family transporter	NA	NA	NA	NA	NA
WP_003813993.1|3182086_3182887_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3183168_3184401_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3184511_3185501_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3185531_3186920_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3188518_3189502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3189698_3190715_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	3255173	3324176	4106500	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3255173_3256124_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3256120_3257140_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3257149_3259858_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3260005_3260662_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260760_3261711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3261858_3262752_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3262951_3264646_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3264680_3265607_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3265675_3266773_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3266791_3267655_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3267666_3268449_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3268445_3269564_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3269560_3271093_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3271133_3272141_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3272285_3273008_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3273023_3274046_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3274362_3275097_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3275181_3276927_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3276923_3277676_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3277720_3278677_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3278765_3279332_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3279339_3280200_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3280229_3280958_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3280989_3281673_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3282510_3283425_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3283489_3284398_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3284488_3285913_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3285914_3287237_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3287233_3289372_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3289449_3294570_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3294670_3294979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3295048_3295606_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3295621_3297103_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3297157_3299011_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3299273_3300611_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3300645_3302643_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3302660_3304709_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3304839_3305706_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3305974_3306940_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3307054_3308203_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3308627_3308939_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3308972_3309233_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3309382_3310516_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3310586_3311723_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3311888_3312683_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3312745_3313189_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3313304_3314255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3314377_3314785_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3314857_3317053_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3317274_3318225_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3318184_3318709_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318840_3319812_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319931_3322376_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3322391_3322982_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3323225_3324176_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	3339622	3439735	4106500	protease,tail,transposase,terminase,tRNA	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3339622_3340573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3341304_3341682_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341666_3342368_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3342511_3343204_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3343203_3344307_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3344416_3346789_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346785_3348345_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3348369_3349167_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3349198_3350344_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3350448_3351891_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351893_3353123_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3355260_3356211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3357340_3357898_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3357873_3358224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3358392_3359187_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3359183_3360233_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3360232_3360922_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3361008_3361506_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3361537_3362854_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3362870_3363845_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3363881_3364340_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3364339_3365020_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3365022_3365451_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3365503_3367234_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3367299_3367872_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367852_3368539_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368894_3369566_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369894_3370116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3370115_3370397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3370393_3370909_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370908_3371460_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3371438_3371681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371685_3372498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3372497_3372761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372801_3372999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372979_3373396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3373400_3377357_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3377349_3377739_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377735_3378269_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3378336_3378696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378705_3381318_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3381343_3381634_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381651_3381981_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381990_3382509_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382763_3383264_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3383271_3383694_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383690_3384089_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3384085_3384481_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3384480_3384669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384682_3385165_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3385227_3385479_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3386153_3387104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3387532_3388135_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3388257_3388500_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3388505_3389561_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389589_3391008_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3391010_3392288_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3392274_3392760_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3393399_3394350_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3394606_3395296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3395288_3395540_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3396094_3396706_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396777_3396984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3397235_3398186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3398284_3399358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3399525_3400320_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3400359_3400884_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3400876_3402619_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3402828_3403587_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3403589_3404297_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3404313_3405195_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3405205_3405964_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3405932_3406688_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3406757_3408176_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3408197_3408848_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3408981_3409317_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3409405_3410356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3410432_3412253_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3412257_3413331_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3413453_3414422_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3414495_3415407_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3415425_3415998_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3416078_3416627_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416626_3418216_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3418285_3418525_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418565_3419591_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419656_3420838_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420934_3421387_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3421396_3422737_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3423053_3424091_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3424472_3424832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424915_3425857_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425931_3426882_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3427175_3428270_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3428360_3429233_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3429254_3430094_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3430169_3431687_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431783_3432884_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432900_3433323_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3433345_3433558_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433604_3434525_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434707_3435457_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3435459_3435789_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3436076_3437429_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3437440_3437824_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437885_3438686_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438784_3439735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	3600404	3655378	4106500	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3600404_3601355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3601471_3602539_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602614_3605743_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3606250_3607216_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3607218_3607890_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3608046_3609006_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3609013_3609676_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609672_3610623_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610744_3611998_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611975_3612938_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3613069_3613564_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613563_3614796_+	dehydratase	NA	NA	NA	NA	NA
WP_019247316.1|3615541_3615823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615809_3616796_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616939_3617344_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3617485_3620872_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620902_3622366_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019247315.1|3622374_3624003_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3624088_3624748_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624777_3625218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625728_3625932_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3626107_3627013_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3627111_3628062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3628160_3629111_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630892_3632086_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3632151_3633180_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3633206_3634379_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814681.1|3634504_3635482_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3635492_3636464_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3636530_3637316_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3637308_3638541_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638736_3639492_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639602_3640121_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641909_3643310_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3643409_3643754_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643842_3644313_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644723_3645122_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3645253_3646204_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648648_3649383_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649792_3649972_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3650162_3651476_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3651491_3653003_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3652999_3654205_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3654400_3655378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	3745191	3860861	4106500	tRNA,protease,transposase	Bacillus_phage(12.5%)	100	NA	NA
WP_005013747.1|3745191_3746142_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3746264_3746993_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3747089_3748268_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3748264_3749098_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3749134_3749875_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749994_3751170_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3751166_3752120_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3752133_3752535_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3752527_3753133_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3753220_3753385_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3753501_3754350_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3754346_3755000_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3755016_3756300_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3756539_3758165_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3758258_3758660_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758684_3759119_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3759120_3760770_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760810_3761980_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929730.1|3761982_3762846_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3766209_3766914_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766907_3767702_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767698_3768664_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768667_3769588_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769684_3770848_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3771070_3771961_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771964_3772468_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3772510_3773509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3773505_3774456_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3774544_3774832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3775023_3775974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3776033_3776594_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3778096_3778978_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3779091_3780294_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3780422_3782282_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3782359_3783169_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3783239_3784241_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3784272_3785133_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3785332_3786337_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3786333_3787920_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787928_3788855_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788877_3789504_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3789602_3790553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790549_3791686_-|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791739_3792516_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3792540_3792999_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3793138_3793780_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793844_3795227_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_010929720.1|3795252_3796101_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3796259_3796871_+	stringent starvation protein A	NA	NA	NA	NA	NA
WP_003815821.1|3796880_3797330_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929718.1|3797996_3798158_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_077069015.1|3798233_3798449_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3798435_3799386_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929717.1|3800429_3800708_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010929716.1|3801850_3802399_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929715.1|3802461_3804141_-	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929714.1|3804137_3805889_-	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_003817696.1|3805885_3806011_-	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_004567834.1|3806024_3807179_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_023852659.1|3807194_3808772_-	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010929712.1|3808897_3809443_-	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3810002_3810953_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811683_3812664_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812677_3813802_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813809_3815564_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815670_3816570_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816634_3817618_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817753_3818734_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818750_3820142_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3820293_3820830_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820760_3822146_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3822288_3822927_-	membrane protein	NA	NA	NA	NA	NA
WP_010929705.1|3823013_3824903_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824899_3825841_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825946_3826996_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3827248_3827950_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827946_3828645_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828645_3830001_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3829997_3830489_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3830507_3831464_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832874_3834977_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3835147_3836191_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3836234_3836978_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3837999_3838410_-	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_010929700.1|3839359_3840157_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3840255_3841206_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3841202_3842153_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3842239_3843190_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3843304_3844306_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3844396_3844963_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3845281_3847195_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3847236_3848667_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848779_3850192_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3850208_3850904_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3851122_3852073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3852097_3852997_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3853151_3853700_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853738_3854458_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_023994893.1|3854628_3857472_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3858065_3860861_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 27
NZ_CP011237	Bordetella pertussis strain H851 chromosome, complete genome	4106500	4005568	4070480	4106500	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4005568_4006054_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4006142_4006280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4006272_4007253_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4007519_4008329_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4008368_4009049_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009042_4009501_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4009512_4009875_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4009957_4010641_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4010696_4011005_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011023_4011338_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4011334_4013809_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4013816_4015208_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4015204_4015390_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4015368_4016070_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016066_4016888_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4016868_4017993_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4017985_4019005_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4019210_4020101_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4020345_4021137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4021219_4021594_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4021571_4022981_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4022973_4024356_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4024690_4026295_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4026372_4027344_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4027354_4028281_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4028671_4029622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029791_4031018_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031217_4032084_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4032076_4033039_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033139_4034090_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034188_4035139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035237_4036188_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036184_4037678_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037674_4040782_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040778_4043847_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043843_4045094_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4045274_4046027_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4046068_4046713_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4046721_4047702_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047801_4048545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4048627_4048975_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4049072_4049915_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049959_4050847_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050873_4051062_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051159_4052617_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052603_4054130_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054148_4054616_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4054615_4055638_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4055758_4056499_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4056553_4057654_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057655_4058846_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058965_4059982_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060300_4060972_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060968_4061877_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4062088_4062736_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4066596_4067664_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067674_4068484_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068573_4069347_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069529_4070480_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
