The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	0	59497	4109545	tRNA,transposase	Natrialba_phage(12.5%)	53	NA	NA
WP_010929569.1|0_1920_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_003806878.1|1916_2609_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003806879.1|2605_3403_+	ParA family protein	NA	Q8JL10	Natrialba_phage	34.9	5.6e-20
WP_010929570.1|3409_4171_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929571.1|4214_5132_+	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	38.1	1.9e-16
WP_019247667.1|5124_5910_+	asparaginase	NA	NA	NA	NA	NA
WP_019247666.1|5943_6126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003806883.1|6721_7912_+	elongation factor Tu	NA	A0A1V0SLW6	Klosneuvirus	29.2	3.1e-14
WP_003806884.1|8150_8531_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003806885.1|8540_9074_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	30.5	1.4e-11
WP_010929572.1|9137_9569_+	50S ribosomal protein L11	NA	NA	NA	NA	NA
WP_003806887.1|9571_10270_+	50S ribosomal protein L1	NA	NA	NA	NA	NA
WP_003806888.1|10512_11037_+	50S ribosomal protein L10	NA	NA	NA	NA	NA
WP_003806889.1|11118_11502_+	50S ribosomal protein L7/L12	NA	NA	NA	NA	NA
WP_010929573.1|11661_15774_+	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	28.8	2.4e-21
WP_003818292.1|15773_20018_+	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	24.7	3.5e-68
WP_010929574.1|20126_20531_-	TssQ family T6SS-associated lipoprotein	NA	NA	NA	NA	NA
WP_010929575.1|20771_21947_+	membrane protein	NA	NA	NA	NA	NA
WP_010929576.1|24352_25459_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003818297.1|26470_27286_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023997043.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929588.1|44712_45663_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|46249_46798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|46769_47006_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|47133_48027_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	70134	123122	4109545	tRNA,transposase	Planktothrix_phage(20.0%)	50	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816713.1|71178_71493_+	DUF1153 domain-containing protein	NA	NA	NA	NA	NA
WP_010929604.1|72685_74593_+	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	37.2	1.1e-117
WP_010929605.1|74754_75375_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_003807804.1|75406_75988_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	54.3	1.7e-05
WP_003807805.1|76076_76328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929606.1|76329_77172_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA	NA
WP_010929607.1|77277_78687_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	165942	226453	4109545	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165942_166893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168336_169239_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169216_169846_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170128_171559_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171592_172222_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172270_173878_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173902_174586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174667_175144_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175350_176301_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177416_177944_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178035_178851_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178911_179646_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179683_181762_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182011_182284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182385_183471_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183474_185379_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185375_189050_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189110_189674_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189681_190104_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190131_190551_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190579_191026_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191152_191650_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191804_194075_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194150_195356_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195454_196405_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196507_197143_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197139_198033_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198427_199528_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199609_199984_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200043_202908_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203052_203793_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203862_205074_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205102_206071_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220103_222947_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223117_223837_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223875_224424_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224578_225478_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	234385	287973	4109545	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	556358	615658	4109545	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_023852617.1|556358_557309_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|558632_559409_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|559443_561216_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|561217_562120_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|562244_562604_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|562635_563598_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|563696_564647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|564659_565595_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|565654_566494_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|566490_567660_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|567656_568946_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|568988_569363_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|569477_570206_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|570213_570918_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|571181_572702_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|572757_573321_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|573339_574371_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|574367_575156_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|575331_576321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|578077_579028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|580250_581153_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|581154_582009_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|582055_583165_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|583175_583694_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|583723_584356_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|584427_585087_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|585083_586223_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|586572_587445_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_010931370.1|587600_588338_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931369.1|588340_589972_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_077075753.1|590067_591057_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927020.1|591053_591764_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931363.1|591859_592876_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|593147_593774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|593829_594957_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|594962_600680_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|601247_602192_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|602380_603316_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|603433_605005_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|605084_606293_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|606790_607708_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|610068_610290_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|610620_611637_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|611721_611973_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|611976_612792_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|612904_613783_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|613894_615658_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
>prophage 7
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	621813	675554	4109545	transposase	Salmonella_phage(33.33%)	48	NA	NA
WP_010930179.1|621813_622764_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|622859_623831_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|623835_624516_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|624653_625046_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|625153_626170_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|626409_627195_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|627289_628699_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|628709_629510_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|629530_630301_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|630343_630811_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|630807_631758_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|633706_634585_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|635511_638490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|638843_639794_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|639790_640879_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|640914_641778_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|642917_643307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|643310_644093_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|644126_644912_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|645187_646327_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|646323_647115_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|647111_647861_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|647857_648730_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|648729_649731_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|649727_650891_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|650916_651600_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|651553_652888_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|652880_653975_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|654741_655692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931343.1|657632_658892_+	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_003814858.1|658888_660427_+	SpoVR family protein	NA	NA	NA	NA	NA
WP_003814856.1|660423_661620_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931342.1|661616_662993_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814852.1|663004_664021_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010927102.1|664089_665325_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931341.1|665425_666220_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|666589_666997_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929281.1|667414_667687_-	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_124740609.1|667856_668081_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814832.1|668268_669123_+	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_010931340.1|669223_669526_+	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814828.1|669570_670188_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931338.1|670204_670513_+	urease subunit beta	NA	NA	NA	NA	NA
WP_010931337.1|670509_672225_+	urease subunit alpha	NA	NA	NA	NA	NA
WP_014905506.1|672227_672845_+	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_019247677.1|672945_673530_+	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_010931336.1|673554_674199_+	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_023995489.1|674603_675554_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	724492	764442	4109545	protease,tRNA,integrase,transposase	Pseudomonas_phage(33.33%)	29	721740:721758	741628:741646
721740:721758	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931308.1|724492_725089_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|725085_725868_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|725940_727032_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|727311_728439_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|728780_729827_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|730337_733094_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|733095_736047_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|736062_737274_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|737270_737471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|737457_738408_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|738424_738919_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|738922_739180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|739723_740635_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|740716_741001_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|741784_742735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
741628:741646	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|743153_745718_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|745762_747616_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|747948_749520_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|750961_751912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905961.1|751997_752738_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_029443749.1|752964_753912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|755299_756250_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814139.1|756443_757259_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931299.1|757391_758831_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814142.1|758844_759186_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931298.1|759240_760896_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814146.1|761047_762058_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814148.1|762190_762964_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|763491_764442_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	774369	821987	4109545	holin,protease,tRNA,transposase	Bovine_alphaherpesvirus(10.0%)	46	NA	NA
WP_005012808.1|774369_775320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818450.1|775458_776211_+	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_023853440.1|776485_778174_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_004566001.1|778193_779453_+	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931274.1|779467_780562_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_010931275.1|780558_782622_-	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931276.1|782697_783378_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_003807204.1|783655_785029_+	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_003818444.1|785030_786050_+	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003818443.1|786113_787085_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|787149_788100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003807199.1|788198_789041_-	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_010931277.1|789040_789376_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010931278.1|789446_790865_-	adenosylhomocysteinase	NA	S4VPF6	Pandoravirus	29.4	8.7e-40
WP_003807194.1|791144_792185_-	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_003818441.1|792264_792516_-	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_010925730.1|792626_793790_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	60.8	5.0e-126
WP_010931279.1|794073_794928_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_010931280.1|794924_795815_+	lysophospholipid acyltransferase family protein	NA	NA	NA	NA	NA
WP_003807183.1|795857_796769_+	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_010931281.1|796795_797488_+	DUF484 family protein	NA	NA	NA	NA	NA
WP_010931282.1|797502_798483_+	tyrosine recombinase XerC	NA	A0A166YH27	Gordonia_phage	30.5	3.3e-14
WP_010931283.1|798495_800637_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003818434.1|800685_801654_-	putative membrane protein	NA	NA	NA	NA	NA
WP_019247300.1|801644_802313_-	DUF1007 family protein	NA	NA	NA	NA	NA
WP_010931286.1|802273_803209_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931287.1|803205_804102_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_010931288.1|804098_804821_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	30.0	1.1e-11
WP_019248127.1|804811_804976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003807166.1|805149_805653_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_010931290.1|805929_807045_+	GTP-binding protein	NA	NA	NA	NA	NA
WP_003807164.1|807187_807652_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA	NA
WP_010931291.1|807799_808339_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003807162.1|808360_809695_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_003807161.1|809708_810014_-	copper-binding protein	NA	NA	NA	NA	NA
WP_023853416.1|810438_811020_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|811101_812052_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|812150_813101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814620.1|813541_814447_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931271.1|814502_816110_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_010931270.1|816363_817869_-	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_003820744.1|817883_818348_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_005012067.1|818637_819588_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820745.1|819750_820281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814611.1|820280_820592_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_005012808.1|821036_821987_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	870131	933966	4109545	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005012067.1|870131_871082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931247.1|871180_872044_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_010931246.1|872040_872940_-	TonB family protein	NA	NA	NA	NA	NA
WP_014486102.1|872977_874861_-	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931244.1|874932_875526_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003814955.1|875536_876907_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_023853327.1|876989_877538_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814953.1|877616_878051_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_003814952.1|878140_878590_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814951.1|878599_879946_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010931242.1|880911_882009_+	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|882020_882962_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931240.1|883134_883638_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_003814943.1|883918_884158_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_019248818.1|884135_885311_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_010931239.1|885440_886568_+	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_023853325.1|886587_888042_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_023853329.1|888049_888610_-	YggT family protein	NA	NA	NA	NA	NA
WP_010931236.1|888763_889291_-	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_003814929.1|889608_890805_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931235.1|890826_893754_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_019247415.1|894059_897122_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_003814925.1|897683_898136_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023998238.1|898337_898847_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931233.1|898915_900103_+	MFS transporter	NA	NA	NA	NA	NA
WP_033446281.1|900106_901513_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931231.1|901648_904108_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|904104_905055_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931230.1|905153_905828_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931229.1|906124_907621_+	membrane protein	NA	NA	NA	NA	NA
WP_003820592.1|907737_909126_+	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_003820593.1|909231_909621_+	VOC family protein	NA	NA	NA	NA	NA
WP_003820594.1|909632_910325_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_010931228.1|910339_911176_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931227.1|911178_911988_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931226.1|913244_913919_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853313.1|913932_914484_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_004567741.1|914542_915907_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_004567739.1|916248_917346_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010927106.1|917641_918070_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_010931224.1|918079_918472_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003820599.1|918660_919725_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931223.1|919761_920508_+	membrane protein	NA	NA	NA	NA	NA
WP_003814883.1|920595_920967_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931222.1|921036_922173_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_010931221.1|922178_923594_-	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_005012067.1|923685_924636_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814877.1|924903_926133_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003820605.1|926168_926825_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814873.1|927045_928293_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003814871.1|928450_928933_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_023853315.1|929927_930491_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_047122802.1|930696_931821_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_005015810.1|931966_932917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|933015_933966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	998896	1101289	4109545	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|998896_1000012_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1000112_1000931_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1001028_1001640_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1001799_1003176_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1003238_1003697_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1003781_1004477_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1004538_1004820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1005382_1006135_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1006179_1007256_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1007252_1008203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1008305_1008968_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1009062_1009233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1009585_1010587_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1010589_1011786_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1011806_1012610_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1012690_1012987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1013017_1013581_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1013621_1014479_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1014486_1015236_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1015257_1016130_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1016158_1016938_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1016971_1017769_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1020423_1020816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1020809_1021670_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1021673_1022636_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1023412_1024102_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1024962_1025913_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1026262_1027132_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1027202_1027898_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1027887_1028397_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1028393_1029614_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1029561_1030464_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1031350_1032637_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1032675_1034049_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1034087_1034789_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1035087_1036077_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1036177_1036639_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1036654_1037203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1037344_1038820_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1038925_1040017_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1040020_1040803_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1040812_1041601_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1042726_1043161_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1043157_1044168_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1044211_1045138_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1045424_1045793_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1046009_1046960_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1047004_1049431_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1049479_1050172_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1050244_1051444_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1051461_1052367_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1052482_1053412_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1053437_1054784_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1054796_1055561_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1055574_1056357_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1056549_1057500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1057561_1058671_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1059183_1060020_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1060146_1061055_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1061051_1062002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1062387_1062930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1063965_1064916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1065157_1065526_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1065571_1066696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1067830_1068571_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1068674_1069295_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1069398_1070349_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1070345_1072454_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1072598_1073258_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1073289_1073754_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1074029_1074215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1074266_1075019_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1075025_1076288_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1076329_1077568_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1078645_1079773_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1079783_1080611_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1080597_1081464_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1082830_1083235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1083326_1084277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1084646_1085558_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1085572_1086283_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1086279_1087524_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1087525_1087960_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1087988_1088294_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010929591.1|1088392_1089343_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1089399_1090548_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1090628_1091579_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1092110_1092908_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1092955_1093609_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1093565_1094654_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1094818_1097044_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1099321_1100218_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1100338_1101289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	1131675	1202647	4109545	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1131675_1132626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1132682_1133795_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1136178_1137129_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1137719_1138496_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1138613_1138877_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1138977_1139982_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1140182_1141784_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1141809_1142568_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1142659_1143316_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1143406_1144171_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1144180_1144369_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1144424_1145468_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1145464_1145878_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1145874_1146495_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1146775_1147726_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1147893_1149285_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1149357_1149936_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1150052_1151450_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1151565_1152771_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1152870_1153389_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1153483_1153729_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1153956_1154271_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1154369_1159550_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1159546_1161715_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1161770_1164086_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1164090_1165410_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1165428_1167102_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1167106_1167775_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1167931_1171753_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1172083_1173034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1173055_1174201_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1174349_1175279_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1175275_1176364_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1176360_1177164_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1177160_1177892_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1177949_1179239_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1179335_1179938_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1184492_1184831_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1185538_1185805_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1187511_1188462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1188458_1189790_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1191050_1193051_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1193043_1193685_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1193681_1194089_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1194085_1194886_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1194960_1195665_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1195696_1196491_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1196487_1197438_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1197536_1198487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1198585_1199020_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1199102_1201439_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1201630_1202647_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	1218842	1275549	4109545	tRNA,transposase	Agrobacterium_phage(20.0%)	41	NA	NA
WP_005012067.1|1218842_1219793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931084.1|1219895_1220480_+	nitroreductase	NA	NA	NA	NA	NA
WP_003812010.1|1220549_1221971_-	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931083.1|1222078_1223425_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010931082.1|1223463_1225098_+	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_003812004.1|1225141_1225480_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931081.1|1225504_1225879_-	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003811986.1|1228991_1229873_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931080.1|1229980_1231609_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010931079.1|1231650_1233168_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247679.1|1233262_1234207_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813309.1|1235388_1236291_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_003813306.1|1236287_1237553_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813303.1|1237597_1238143_+	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813302.1|1238176_1238863_+	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_010931077.1|1238834_1239764_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813298.1|1239935_1240925_+	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931076.1|1240989_1241274_+	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813293.1|1241289_1242054_+	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931075.1|1242050_1242557_+	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_010929591.1|1243718_1244669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931074.1|1244756_1246409_+	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010931073.1|1246419_1247208_+	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_003813284.1|1247207_1247678_+	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931072.1|1247752_1249066_+	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_010931071.1|1249119_1249725_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010927663.1|1250041_1250992_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1250988_1251939_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1252199_1253228_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_077075749.1|1253307_1255152_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816847.1|1255651_1256233_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1256545_1260592_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1260832_1268494_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1268490_1269441_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1270580_1271054_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1271193_1271814_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1271949_1272750_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1272804_1273896_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1273917_1274361_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1274389_1275022_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1275132_1275549_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
>prophage 14
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	1303916	1361126	4109545	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1303916_1304867_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1308613_1309225_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1309447_1310908_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1311004_1312597_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1312950_1313208_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1313209_1314550_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1314645_1315335_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1315347_1316778_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1318502_1319324_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1319334_1320906_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1320934_1321912_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1321938_1322742_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1322738_1323533_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1323540_1324776_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1324789_1325203_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1325952_1326903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1327524_1329252_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1329363_1330722_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1331014_1331965_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1332005_1333076_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1333098_1333977_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1334148_1335120_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1335282_1336125_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1336286_1336967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1336960_1338130_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1338126_1339158_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1339225_1340443_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1340477_1342010_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1342090_1342714_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1342744_1343356_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1343391_1343862_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_033456131.1|1344051_1344285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248147.1|1344292_1345297_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1345333_1346848_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1346851_1347811_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1347839_1348643_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1348644_1350279_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1350362_1351424_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1351622_1351892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1351895_1352420_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1352835_1353786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1353782_1354817_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1354925_1355564_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1355858_1356086_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1356208_1356922_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1357166_1358117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1358256_1358502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1358616_1360065_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1360175_1361126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	1744261	1792276	4109545	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1744261_1745212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1745310_1747911_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1748017_1749022_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1749130_1750471_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1750511_1751540_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1751735_1752281_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1752277_1752838_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1752936_1753887_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1753924_1754512_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1754529_1754913_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1756272_1757565_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1757699_1758740_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010930147.1|1758837_1759854_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1760121_1760757_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1760894_1761653_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1761637_1762417_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1762434_1763319_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1763315_1764095_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1764121_1764799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1765087_1765840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1765958_1767359_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1767382_1767781_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1767956_1768157_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1768295_1769024_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1769157_1770573_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1770576_1771440_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1771452_1772202_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1772444_1774400_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1774381_1775050_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1775824_1776775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1776873_1777824_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1777972_1778311_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1778368_1778530_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1778561_1778762_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1779027_1781601_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1781671_1784221_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1786771_1787260_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1787351_1788503_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1788556_1789378_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1789416_1790646_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1790774_1791215_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1791325_1792276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	1853838	1913108	4109545	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1853838_1854789_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1854913_1855723_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1855923_1856874_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1858147_1859365_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1860421_1861324_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1861400_1862273_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1862403_1862772_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1862829_1863876_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1864071_1865328_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1865332_1866670_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1866819_1867776_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1867878_1868811_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1868926_1869247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1869239_1869599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1869646_1871221_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1871273_1872218_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1872235_1873066_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1873058_1874693_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1874689_1876045_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1876951_1878529_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1878532_1879807_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1879904_1880279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1881994_1883128_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1883165_1883771_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1883767_1884586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1884657_1887282_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1887268_1887523_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1887589_1888171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1888474_1888735_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1888900_1889524_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1889523_1890297_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1890293_1891502_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1891527_1892001_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1892074_1893025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1893123_1894074_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1894172_1895522_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1896287_1897043_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1897135_1900018_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1900340_1900766_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1900793_1901942_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1901938_1902445_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1902460_1903747_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1903796_1905092_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1905093_1905732_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1905737_1906895_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1906921_1908277_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1908280_1909351_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1909489_1909726_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1909813_1910920_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1910885_1912190_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1912208_1913108_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 17
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	1923348	1969769	4109545	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1923348_1924299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1924397_1925348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1925547_1926633_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1926648_1927410_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1927406_1928330_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1928428_1928953_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1928961_1929705_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1929800_1930040_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1930053_1930206_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1930291_1931782_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1931873_1932812_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1932808_1932985_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1932987_1933650_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1935271_1935415_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1935411_1936386_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1936552_1937503_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1937499_1938774_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1938877_1940071_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1940067_1940721_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1940717_1942154_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1942141_1942501_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_005012067.1|1943473_1944424_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1944522_1945473_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1946518_1948384_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1948641_1950162_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1950249_1950900_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1951848_1953144_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1953165_1954050_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1954148_1955024_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1955013_1955370_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1955500_1956475_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1956604_1956784_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1956881_1957406_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1957416_1958253_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1958365_1958737_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1958733_1959285_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1959300_1960992_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1961040_1961721_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1961968_1962433_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1962602_1963532_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1963544_1964192_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1964265_1966083_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1966166_1967117_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1967215_1968166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1968818_1969769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	1999542	2063911	4109545	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1999542_2000493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2000714_2001665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2001763_2002729_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2002866_2003766_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2006360_2007848_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2007858_2009055_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2009127_2010447_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2010443_2011319_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2011349_2012498_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2012515_2012830_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2012851_2013574_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2013573_2014392_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2014396_2014924_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2014929_2016186_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2016544_2017684_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2017761_2018634_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2019504_2020455_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2020414_2021050_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2021409_2022732_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2023050_2023872_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2025296_2025869_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2025908_2027738_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2027700_2028759_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2028796_2029258_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2029342_2030089_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2031579_2034810_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2034876_2036208_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2036460_2036835_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2036937_2038116_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2038126_2038717_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2038827_2039634_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2039659_2040454_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2041454_2042429_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2042587_2043100_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2043256_2044228_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2045972_2046779_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2046775_2048077_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2048027_2048792_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2048905_2049676_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2049760_2050948_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2051020_2051395_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2051495_2052758_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2052754_2053612_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2053784_2054786_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2055237_2056188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2057751_2058903_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2059271_2059508_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2059571_2059739_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_077075750.1|2059852_2061748_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2061911_2062862_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2062960_2063911_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	2250379	2311727	4109545	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2250379_2251330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2251446_2252166_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2252338_2253325_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2253325_2253808_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2253811_2255095_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2255091_2256030_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2256026_2257736_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2257745_2258993_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2260603_2261893_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2263030_2263804_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2264465_2265209_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2265283_2266024_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2266219_2267056_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2267106_2267877_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2267926_2268979_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2268975_2269602_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2269598_2270633_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2270811_2271828_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2271926_2272877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2275617_2276907_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2277025_2277463_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2277506_2278715_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2278861_2279326_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2279349_2280300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2281284_2282058_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2282054_2283053_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2283137_2283914_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2284069_2285674_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2286054_2287179_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2287305_2287929_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2287925_2289827_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2289875_2290670_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2290682_2291684_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2291680_2292130_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2292179_2293028_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2293125_2293668_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2293711_2294662_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2294817_2295144_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2295140_2295422_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2295421_2295901_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2295897_2297526_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2297522_2297867_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2297866_2300800_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2301958_2302909_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2303007_2303304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2303410_2304328_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2304332_2305046_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2305059_2306031_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2307780_2308131_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2308134_2309322_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2309760_2310483_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2310776_2311727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	2332518	2403672	4109545	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2332518_2333469_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2334021_2335647_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2335696_2336731_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2336733_2338080_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2338076_2339591_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2339581_2340592_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2341065_2342007_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2342015_2342984_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2344523_2345492_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2345669_2346659_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2346705_2347464_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2347653_2348391_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2348489_2349440_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2349624_2350407_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2350400_2351102_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2351341_2351944_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2353270_2354221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2354217_2355774_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2355766_2356540_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2356598_2357549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2357630_2358806_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2358819_2360877_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2360873_2361899_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2361910_2363200_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2363222_2364320_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2364316_2365207_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2365203_2367288_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2367319_2368489_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2368530_2369271_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2369270_2370041_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2370896_2371682_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2371708_2373793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2373960_2375916_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2376239_2376740_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2376838_2378365_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2378502_2379390_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2379404_2380358_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2380409_2382500_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2382515_2382902_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2385595_2386399_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2387692_2388595_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2388659_2389436_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2389757_2390807_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2390930_2392601_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2392605_2393400_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2393498_2394449_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2394468_2395374_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2395451_2396150_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2396309_2397254_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2397263_2398751_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2398750_2399818_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2399881_2401294_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2401479_2402700_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2402721_2403672_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	2499501	2558282	4109545	tRNA,transposase	Planktothrix_phage(28.57%)	49	NA	NA
WP_003812608.1|2499501_2501451_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2501838_2502615_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2502620_2503013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2503434_2504385_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2504381_2505479_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2505510_2506461_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2508242_2509484_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2509495_2510269_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2510295_2511246_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2511725_2512382_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2512396_2514064_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2514066_2514696_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2514907_2516002_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2516146_2516959_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2516962_2518546_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2518716_2519847_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2520033_2521110_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2521191_2521842_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2521856_2523260_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2523543_2524362_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2524358_2525063_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2525962_2527078_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2527111_2527486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2527508_2528666_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2528678_2528912_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2529546_2532516_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2532530_2532740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2532891_2533521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2533517_2535575_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2535631_2536312_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2536308_2536869_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2536875_2537973_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2538125_2538719_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2538715_2540008_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2540021_2540564_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2540573_2541410_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2541443_2542505_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2542546_2543599_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2543614_2543917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2544058_2545009_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2545187_2546882_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2546878_2547964_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2548011_2548911_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2548921_2549566_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2550587_2553830_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2553840_2554995_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2555221_2556184_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2556282_2557233_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2557331_2558282_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	2610819	2677319	4109545	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2610819_2611770_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2612139_2612712_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2612714_2613725_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2613717_2614218_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2614228_2614570_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2614638_2615373_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2615389_2615659_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2615681_2616470_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2616516_2617533_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2617749_2619192_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2619370_2620990_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2621110_2622931_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2623009_2624542_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2624575_2626222_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2626291_2627314_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2627331_2628465_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2628467_2629157_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2629156_2629942_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2629985_2630750_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2630788_2632210_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2632275_2632980_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2633027_2633447_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2633459_2633867_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2634050_2634761_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2634887_2635178_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2635195_2635678_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2640183_2641338_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2641643_2642660_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2642906_2643695_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2643761_2644442_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2644438_2645209_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2645307_2646258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2646313_2647231_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2647241_2648420_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2648439_2649435_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2651023_2651632_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2651619_2652660_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2652677_2653640_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2653636_2654830_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2654826_2655624_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2655649_2656636_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2656654_2658694_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2658895_2659576_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2659589_2660501_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2660497_2661076_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2661214_2662120_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2662127_2665547_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2665534_2668135_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2669090_2669723_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2670116_2670875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2670871_2672074_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2672261_2673212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2674119_2675265_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2675251_2676007_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2676123_2676303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2676368_2677319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	2839884	2905467	4109545	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2839884_2840835_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2840933_2841884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2842086_2843076_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2843159_2843513_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2843590_2844199_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2845872_2846451_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2846475_2847429_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2847468_2848386_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2848507_2849434_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2849441_2850188_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2850514_2851456_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2851682_2853380_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2853814_2855236_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2855389_2856169_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2856293_2857172_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2857277_2858402_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2858447_2859410_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2859402_2860257_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2860364_2860775_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2860771_2861722_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2861820_2862702_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2862779_2864159_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2864197_2865043_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2865058_2865373_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2865405_2865942_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2866114_2866690_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2866792_2867530_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2867597_2869235_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2869342_2870098_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2870085_2871048_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2871155_2871950_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2872011_2874087_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2874251_2876627_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2876707_2878063_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2879541_2880264_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2880318_2881302_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2881431_2882382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2882378_2883281_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2883368_2884127_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2884139_2885231_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2885328_2886756_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2886985_2888200_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2888245_2891116_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2893526_2894015_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2894140_2896837_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2896991_2899274_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2899437_2900070_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2900168_2901119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2901165_2901720_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2901787_2902633_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2902702_2903671_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2903670_2905467_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	2923037	2984064	4109545	holin,tRNA,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2923037_2924558_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2924600_2924903_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2924899_2925532_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2925610_2927476_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2927472_2928267_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2928295_2929411_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2930315_2931194_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2931193_2932018_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2932185_2933136_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2933348_2936198_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2936179_2936908_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2937048_2938512_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2938508_2938880_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2938897_2940211_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2940247_2940706_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2940818_2941769_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2941765_2942779_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2942918_2943905_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2944263_2944971_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2945551_2946502_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2946653_2947256_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2947274_2947907_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2947951_2948203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2948144_2950031_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2950049_2950892_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2950888_2952247_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2952467_2953262_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2953492_2954986_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2955221_2957303_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2957497_2958538_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2958672_2959689_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2959710_2960568_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2960612_2961389_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2961756_2962707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2962733_2963198_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2964404_2966693_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2966809_2967682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2967724_2968879_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2968913_2969744_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2969827_2971372_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2971414_2971774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2971775_2972189_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2972229_2972547_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2972631_2973348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2973611_2975033_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2975099_2977847_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010931363.1|2978179_2979196_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2979531_2980173_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2980263_2981700_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2981857_2982931_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2982927_2984064_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 25
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	2987817	3060334	4109545	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2987817_2988834_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2989771_2991199_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2991195_2992218_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2992207_2992681_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2992821_2993709_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2993705_2995349_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2995345_2996353_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2997183_2998200_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2998299_2998932_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2998940_2999330_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2999382_3000435_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3001298_3003005_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3003078_3003579_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3003593_3005651_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3005677_3005971_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3006072_3007020_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3007032_3007908_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3008028_3008589_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3008623_3008947_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3009382_3010120_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3010418_3011369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3011612_3011876_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3011949_3012231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3012247_3013108_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3013104_3013440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3013493_3014144_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3015824_3016769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3016814_3017132_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3017134_3018073_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3018250_3018736_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3018754_3019303_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3019334_3019487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3020816_3021458_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3021612_3023961_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3023957_3024896_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3024921_3026112_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3026108_3026882_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3026911_3028105_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3028222_3029233_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3029250_3031287_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3031481_3032222_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3032320_3033271_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3033313_3034489_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3034710_3036501_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3036513_3038175_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3038187_3040893_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3041185_3042940_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3042936_3043563_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3043559_3044411_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3044540_3046601_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3046787_3047402_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3047547_3047799_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3047868_3049251_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3049247_3052427_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3053234_3054152_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3054203_3054935_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3054994_3055567_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3057075_3058092_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3058229_3059279_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3059383_3060334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	3079734	3144674	4109545	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3079734_3080685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3080783_3081368_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3081402_3082392_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3082388_3083330_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3083326_3084547_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3084589_3084904_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3085095_3085455_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3085456_3087172_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3087359_3088031_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3088045_3089374_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3089370_3090270_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3090356_3091442_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3091434_3092565_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3092567_3095249_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3095619_3096201_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3096326_3097052_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3097048_3097726_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3097941_3099123_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3099895_3100078_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3100107_3101058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3101187_3101580_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3101856_3102768_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3102892_3103867_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3103863_3104814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3104912_3105998_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3106095_3106506_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3107121_3109035_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3109170_3111783_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3111784_3112519_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3112682_3113864_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3113860_3114073_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3114069_3115050_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3115095_3115923_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3116072_3117887_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3117941_3118325_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3118321_3119272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3119384_3119636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3119829_3120045_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3120141_3121260_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3121379_3121592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3121751_3121973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3122025_3122976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3124152_3125523_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3125555_3126347_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3126359_3127415_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3127440_3128316_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3128421_3128670_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3128704_3130159_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3130155_3130677_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3130705_3132058_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3132281_3135170_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3137314_3138616_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3138630_3139347_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3139628_3140309_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3140836_3141496_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3141894_3143727_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3143723_3144674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	3236297	3305300	4109545	transposase	Klosneuvirus(16.67%)	55	NA	NA
WP_041337087.1|3236297_3237248_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3237244_3238264_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3238273_3240982_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3241129_3241786_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3241884_3242835_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3242982_3243876_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3244075_3245770_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3245804_3246731_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3246799_3247897_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3247915_3248779_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3248790_3249573_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3249569_3250688_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3250684_3252217_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3252257_3253265_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3253409_3254132_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3254147_3255170_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3255486_3256221_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3256305_3258051_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3258047_3258800_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3258844_3259801_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3259889_3260456_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3260463_3261324_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3261353_3262082_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3262113_3262797_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3263634_3264549_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3264613_3265522_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3265612_3267037_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3267038_3268361_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3268357_3270496_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3270573_3275694_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3275794_3276103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3276172_3276730_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3276745_3278227_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3278281_3280135_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3280397_3281735_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3281769_3283767_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3283784_3285833_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3285963_3286830_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3287098_3288064_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3288178_3289327_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3289751_3290063_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3290096_3290357_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3290506_3291640_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3291710_3292847_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3293012_3293807_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3293869_3294313_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3294428_3295379_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3295501_3295909_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3295981_3298177_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3298398_3299349_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3299308_3299833_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3299964_3300936_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3301055_3303500_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3303515_3304106_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3304349_3305300_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	3320746	3420859	4109545	protease,tRNA,terminase,transposase,tail	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3320746_3321697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3322428_3322806_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3322790_3323492_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3323635_3324328_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3324327_3325431_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3325540_3327913_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3327909_3329469_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3329493_3330291_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3330322_3331468_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3331572_3333015_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3333017_3334247_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3336384_3337335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3338464_3339022_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3338997_3339348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3339516_3340311_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3340307_3341357_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3341356_3342046_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3342132_3342630_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3342661_3343978_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3343994_3344969_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3345005_3345464_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3345463_3346144_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3346146_3346575_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3346627_3348358_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3348423_3348996_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3348976_3349663_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3350018_3350690_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3351018_3351240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3351239_3351521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3351517_3352033_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3352032_3352584_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3352562_3352805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3352809_3353622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3353621_3353885_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3353925_3354123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3354103_3354520_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3354524_3358481_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3358473_3358863_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3358859_3359393_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3359460_3359820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3359829_3362442_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3362467_3362758_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3362775_3363105_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3363114_3363633_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3363887_3364388_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3364395_3364818_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3364814_3365213_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3365209_3365605_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3365604_3365793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3365806_3366289_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3366351_3366603_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3367277_3368228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3368656_3369259_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3369381_3369624_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3369629_3370685_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3370713_3372132_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3372134_3373412_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3373398_3373884_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3374523_3375474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3375730_3376420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3376412_3376664_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3377218_3377830_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3377901_3378108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3378359_3379310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3379408_3380482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3380649_3381444_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3381483_3382008_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3382000_3383743_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3383952_3384711_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3384713_3385421_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3385437_3386319_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3386329_3387088_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3387056_3387812_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3387881_3389300_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3389321_3389972_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3390105_3390441_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3390529_3391480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3391556_3393377_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3393381_3394455_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3394577_3395546_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3395619_3396531_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3396549_3397122_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3397202_3397751_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3397750_3399340_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3399409_3399649_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3399689_3400715_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3400780_3401962_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3402058_3402511_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3402520_3403861_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3404177_3405215_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3405596_3405956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3406039_3406981_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3407055_3408006_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3408299_3409394_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3409484_3410357_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3410378_3411218_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3411293_3412811_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3412907_3414008_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3414024_3414447_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3414469_3414682_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3414728_3415649_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3415831_3416581_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3416583_3416913_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3417200_3418553_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3418564_3418948_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3419009_3419810_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3419908_3420859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011234	Bordetella pertussis strain H320 chromosome, complete genome	4109545	4008613	4073525	4109545	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4008613_4009099_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4009187_4009325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4009317_4010298_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4010564_4011374_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4011413_4012094_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4012087_4012546_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4012557_4012920_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4013002_4013686_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4013741_4014050_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4014068_4014383_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4014379_4016854_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4016861_4018253_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4018249_4018435_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4018413_4019115_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4019111_4019933_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4019913_4021038_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4021030_4022050_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4022255_4023146_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4023390_4024182_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4024264_4024639_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4024616_4026026_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4026018_4027401_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4027735_4029340_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4029417_4030389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4030399_4031326_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4031716_4032667_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4032836_4034063_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4034262_4035129_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4035121_4036084_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4036184_4037135_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|4037233_4038184_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4038282_4039233_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4039229_4040723_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4040719_4043827_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4043823_4046892_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4046888_4048139_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4048319_4049072_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4049113_4049758_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4049766_4050747_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4050846_4051590_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4051672_4052020_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4052117_4052960_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4053004_4053892_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4053918_4054107_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4054204_4055662_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4055648_4057175_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4057193_4057661_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4057660_4058683_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4058803_4059544_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4059598_4060699_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4060700_4061891_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4062010_4063027_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4063345_4064017_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4064013_4064922_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4065133_4065781_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4069641_4070709_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4070719_4071529_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4071618_4072392_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4072574_4073525_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
