The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	27282	70036	4107433	transposase,tRNA	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	77634	136108	4107433	transposase,tRNA	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	164893	225404	4107433	protease,transposase,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	233336	286924	4107433	protease,transposase,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267754_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278077_278293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280425_281274_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	390857	448366	4107433	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390857_391808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391944_392862_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392858_393107_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393103_394309_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394381_395377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395399_396620_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396616_397261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400105_401059_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401157_402141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402067_402769_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402817_403588_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403584_404763_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404930_406637_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407570_409160_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409209_410202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410270_410870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411330_412311_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412386_413337_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413425_414340_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414336_414996_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415085_416009_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416014_416470_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416466_417570_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417528_417798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417757_419377_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419373_420432_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420561_421056_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421148_422126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422321_423527_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423523_425035_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426554_426734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427143_427878_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430322_431273_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431404_431803_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432213_432684_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432772_433117_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433216_434617_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436405_436924_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437034_437790_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437985_439218_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439210_439996_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440062_441034_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441044_442022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442147_443320_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443346_444375_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444440_445634_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447415_448366_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	589371	650561	4107433	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589371_590322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|590797_591688_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591684_592506_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619570_619735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|622979_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|638047_639400_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|646243_647116_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	655885	702076	4107433	transposase,terminase,tRNA,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680887_681109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|690807_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	708242	762172	4107433	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728687_731060_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731169_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736013_736886_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737226_737445_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737484_738864_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738905_740303_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740342_741995_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741998_742883_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742882_743824_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743902_745522_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745688_746504_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746571_747141_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747141_748092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748746_749844_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749877_751143_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751300_752251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752494_753085_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753100_755545_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755664_756636_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756767_757292_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757251_758202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758423_760619_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|760691_761099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|761221_762172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	884761	952737	4107433	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|884761_885778_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885974_886958_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888556_889945_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889975_890965_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891075_892308_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892589_893390_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893412_895644_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|896431_896878_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896899_897646_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897789_898767_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899400_900012_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900005_901223_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901363_902314_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|902310_903030_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|903150_905310_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|905400_905670_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|905758_905965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|905963_906491_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|906509_907289_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|907456_908473_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|908545_909037_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|909047_910763_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|911926_912877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912873_914706_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915104_915764_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|916291_916972_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917253_917970_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917984_919286_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|921430_924319_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924542_925895_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925923_926445_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926441_927896_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927930_928179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928284_929160_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929185_930241_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930253_931045_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931077_932448_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933624_934575_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934627_934849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935008_935221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935340_936459_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|936555_936771_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|936964_937216_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937328_938279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938275_938659_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938713_940528_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940677_941505_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941550_942531_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942527_942740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942736_943918_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944081_944816_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944817_947430_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947565_949479_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950094_950505_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950602_951688_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951786_952737_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	996266	1068783	4107433	transposase,tRNA	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|996266_997217_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997321_998371_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998508_999525_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001033_1001606_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001665_1002397_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002448_1003366_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004173_1007353_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007349_1008732_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008801_1009053_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009198_1009813_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1009999_1012060_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012189_1013041_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013037_1013664_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013660_1015415_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015707_1018413_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018425_1020087_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020099_1021890_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022111_1023287_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023329_1024280_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024378_1025119_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025313_1027350_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027367_1028378_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028495_1029689_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029718_1030492_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030488_1031679_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031704_1032643_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032639_1034988_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035142_1035784_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1037113_1037266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037297_1037846_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1037864_1038350_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038527_1039466_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039468_1039786_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039831_1040776_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042456_1043107_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043160_1043496_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043492_1044353_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044369_1044651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044724_1044988_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045231_1046182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046480_1047218_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047653_1047977_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048011_1048572_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048692_1049568_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049580_1050528_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050629_1050923_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050949_1053007_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053021_1053522_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053595_1055302_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056165_1057218_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057270_1057660_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057668_1058301_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058400_1059417_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1060247_1061255_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1061251_1062895_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1062891_1063779_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1063919_1064393_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1064382_1065405_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1065401_1066829_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067766_1068783_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1072536	1134612	4107433	holin,transposase,tRNA	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1072536_1073673_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073669_1074743_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074900_1076337_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076427_1077069_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077404_1078421_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080463_1081414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082616_1084038_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084301_1085018_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085102_1085420_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085460_1085874_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085875_1086235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086277_1087822_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087905_1088736_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088770_1089925_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089967_1090840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090956_1093245_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094451_1094916_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094942_1095893_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095910_1096048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096260_1097037_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097081_1097939_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097960_1098977_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099111_1100152_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100346_1102428_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102663_1104157_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104387_1105182_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105402_1106761_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106757_1107600_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107618_1109505_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109446_1109698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109742_1110375_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110393_1110996_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111147_1112098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112678_1113386_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113744_1114731_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114870_1115884_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115880_1116831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116848_1116989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116943_1117402_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117438_1118752_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118769_1119141_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119137_1120601_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120741_1121470_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121451_1124301_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124513_1125464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1125631_1126456_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1126455_1127334_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1128238_1129354_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1129382_1130177_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1130173_1132039_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1132117_1132750_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1132746_1133049_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1133091_1134612_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1152182	1218701	4107433	transposase,tRNA	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1152182_1153979_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1153978_1154947_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1155016_1155862_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1155929_1156484_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1156530_1157481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1157579_1158212_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1158376_1160659_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160813_1163510_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163635_1164124_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166534_1169405_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169450_1170665_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170894_1172322_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172419_1173511_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173523_1174282_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174369_1175272_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175268_1176219_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176348_1177332_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177386_1178109_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179587_1180943_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181023_1183399_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1183563_1185639_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1185700_1186495_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186602_1187565_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187552_1188308_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188415_1190053_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190120_1190858_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190960_1191536_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191708_1192245_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1192277_1192592_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192607_1193453_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1193491_1194871_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194948_1195830_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195928_1196879_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196875_1197286_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197393_1198248_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198240_1199203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199248_1200373_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200478_1201357_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201481_1202261_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202414_1203836_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204270_1205968_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206194_1207136_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207462_1208209_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208216_1209143_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209264_1210182_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210221_1211175_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211199_1211778_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213451_1214060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214137_1214491_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214574_1215564_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1215560_1215749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215766_1216717_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216803_1217754_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217750_1218701_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1269628	1326839	4107433	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269628_1270579_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274325_1274937_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275159_1276620_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276716_1278309_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278662_1278920_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278921_1280262_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280357_1281047_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281059_1282490_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284214_1285036_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285046_1286618_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286646_1287624_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287650_1288454_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288450_1289245_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289252_1290488_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1290501_1290915_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291664_1292615_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293236_1294964_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295075_1296434_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296490_1296709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296726_1297677_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297717_1298788_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298810_1299689_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299860_1300832_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300994_1301837_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301998_1302679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1302672_1303842_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1303838_1304870_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_023853282.1|1304937_1306155_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306189_1307722_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307802_1308426_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308456_1309068_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309103_1309574_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310005_1311010_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311046_1312561_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312564_1313524_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313552_1314356_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314357_1315992_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316075_1317137_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317335_1317605_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317608_1318133_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318548_1319499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319495_1320530_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320638_1321277_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321571_1321799_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321921_1322635_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322879_1323830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1323969_1324215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324329_1325778_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325888_1326839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1382333	1438739	4107433	transposase	Enterococcus_phage(16.67%)	51	NA	NA
WP_010930208.1|1382333_1383284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930975.1|1383286_1384240_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247213.1|1384267_1385119_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	37.6	2.1e-33
WP_010929099.1|1385124_1386153_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010930973.1|1386149_1387193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930972.1|1387260_1388286_-	dipeptidase	NA	NA	NA	NA	NA
WP_010930971.1|1388567_1389821_+	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_003821030.1|1389831_1390104_+	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_010930970.1|1390100_1393040_+	sarcosine oxidase subunit alpha family protein	NA	NA	NA	NA	NA
WP_010930969.1|1393047_1393647_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA	NA
WP_010929093.1|1393647_1394496_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_019248827.1|1394533_1395520_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930967.1|1395535_1396972_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010930966.1|1396984_1397776_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930965.1|1398094_1399150_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA	NA
WP_023995218.1|1399186_1399996_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA	NA
WP_010930963.1|1399996_1400545_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_003814098.1|1400695_1401115_+	ferric iron uptake transcriptional regulator	NA	NA	NA	NA	NA
WP_010930962.1|1401189_1402851_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_010930961.1|1402866_1403766_-	NAD kinase	NA	NA	NA	NA	NA
WP_003814090.1|1403880_1404885_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_023853055.1|1404942_1406031_+	ferrochelatase	NA	NA	NA	NA	NA
WP_023853049.1|1406112_1406355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814083.1|1406496_1407051_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_010926991.1|1407058_1407439_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010930959.1|1407529_1409455_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	50.3	1.1e-146
WP_010929084.1|1409555_1410689_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	60.8	3.9e-19
WP_010930957.1|1410857_1413608_-	insulinase family protein	NA	A0A2K9LA15	Tupanvirus	28.1	1.5e-19
WP_003814072.1|1413940_1414315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930956.1|1414352_1414895_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930955.1|1414898_1416071_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_003814066.1|1416092_1416980_-	MoxR family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|1417072_1418023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1418121_1419072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419089_1419242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419238_1419592_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419604_1419967_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420008_1420434_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420636_1421893_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422091_1423072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423221_1424463_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424561_1425512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425520_1426216_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429037_1429637_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429647_1431813_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431836_1433621_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433620_1433710_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434404_1434677_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434676_1436743_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436739_1437690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437788_1438739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1514199	1582285	4107433	transposase,tRNA	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1514199_1514688_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514805_1515384_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515489_1515858_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515956_1516907_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516913_1518026_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518712_1519915_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1520118_1522779_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1522791_1526196_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526863_1529089_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529135_1529462_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529512_1530121_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530219_1531170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531239_1532004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1532000_1532537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532703_1533555_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533614_1534241_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534237_1535188_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535286_1536399_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536388_1537390_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537495_1539007_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539003_1540308_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540419_1540980_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541247_1541802_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542257_1542473_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542727_1545325_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545321_1546509_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1547167_1547782_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1547870_1548992_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549009_1549915_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550807_1551758_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551939_1552692_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552760_1553420_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553416_1554145_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554157_1556437_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556461_1556665_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556706_1557339_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557474_1558392_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558388_1559102_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559339_1560110_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560114_1560714_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560958_1562449_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562507_1562792_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1563357_1564284_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564420_1565161_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565327_1566704_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566885_1567791_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569442_1571245_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1571362_1572013_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572111_1573062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573083_1574304_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574489_1575902_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575965_1577033_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577032_1578520_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578529_1579474_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579633_1580332_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580409_1581315_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581334_1582285_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1618234	1673825	4107433	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618234_1619185_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619243_1620017_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620009_1621566_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621562_1622513_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623839_1624442_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624681_1625383_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625376_1626159_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626343_1627294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627392_1628130_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628319_1629078_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629124_1630114_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630291_1631260_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632799_1633768_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633776_1634718_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635191_1636202_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636192_1637707_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637703_1639050_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1639052_1640087_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640136_1641762_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642314_1643265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643369_1644317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644370_1646185_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646177_1646852_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646981_1650056_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650069_1650369_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650683_1651307_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1651550_1652420_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652397_1653342_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653427_1654354_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654466_1655246_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655236_1656433_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656463_1657414_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657635_1658325_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658389_1659145_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659196_1660189_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660198_1661152_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661267_1662230_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663631_1664060_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664056_1665007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1665300_1666023_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666461_1667649_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1667652_1668003_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669752_1670724_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670737_1671451_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671455_1672373_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672479_1672776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672874_1673825_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1831592	1890862	4107433	protease,transposase,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831592_1832543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832667_1833477_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1833677_1834628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835901_1837119_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838175_1839078_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839154_1840027_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840157_1840526_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840583_1841630_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841825_1843082_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843086_1844424_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844573_1845530_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845632_1846565_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846680_1847001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846993_1847353_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847400_1848975_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849027_1849972_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849989_1850820_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850812_1852447_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852443_1853799_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854705_1856283_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856286_1857561_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857658_1858033_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859748_1860882_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860919_1861525_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861521_1862340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862411_1865036_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865022_1865277_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865343_1865925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866228_1866489_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866654_1867278_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867277_1868051_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868047_1869256_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869281_1869755_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869828_1870779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870877_1871828_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871926_1873276_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874041_1874797_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874889_1877772_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878094_1878520_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878547_1879696_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879692_1880199_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1880214_1881501_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1881550_1882846_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882847_1883486_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1883491_1884649_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884675_1886031_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886034_1887105_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887243_1887480_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887567_1888674_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888639_1889944_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889962_1890862_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1901102	1945425	4107433	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901102_1902053_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902151_1903102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903301_1904387_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904402_1905164_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1905160_1906084_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1906182_1906707_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906715_1907459_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907554_1907794_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907807_1907960_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908045_1909536_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909627_1910566_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910562_1910739_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910741_1911404_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913025_1913169_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913165_1914140_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914034_1914289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914306_1915257_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915253_1916528_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916631_1917825_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917821_1918475_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918471_1919908_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919895_1920255_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921069_1921210_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921227_1922178_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923223_1925089_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925346_1926867_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926954_1927605_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1928553_1929849_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929870_1930755_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930853_1931729_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931718_1932075_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932205_1933180_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933309_1933489_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933586_1934111_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934121_1934958_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935070_1935442_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935438_1935990_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936005_1937697_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937745_1938426_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938673_1939138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939307_1940237_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940249_1940897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940970_1942788_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942871_1943822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944474_1945425_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	1975198	2039567	4107433	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975198_1976149_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976370_1977321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977419_1978385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978522_1979422_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982016_1983504_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983514_1984711_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984783_1986103_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986099_1986975_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987005_1988154_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988171_1988486_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988507_1989230_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989229_1990048_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990052_1990580_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990585_1991842_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992200_1993340_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993417_1994290_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995160_1996111_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996070_1996706_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997065_1998388_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998706_1999528_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000952_2001525_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001564_2003394_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003356_2004415_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004452_2004914_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004998_2005745_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007235_2010466_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010532_2011864_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012116_2012491_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012593_2013772_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013782_2014373_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014483_2015290_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015315_2016110_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017110_2018085_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018243_2018756_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018912_2019884_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021628_2022435_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2022431_2023733_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2023683_2024448_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024561_2025332_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025416_2026604_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026676_2027051_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2027151_2028414_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028410_2029268_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029440_2030442_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030893_2031844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2033407_2034559_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034927_2035164_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035227_2035395_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2035508_2037404_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2037567_2038518_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038616_2039567_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	2171096	2220749	4107433	transposase,tRNA	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171096_2172047_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172145_2174140_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174199_2175165_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175154_2178016_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178018_2178525_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178629_2179838_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179839_2180778_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180939_2181413_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181409_2182360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182470_2182911_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183039_2184269_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184307_2185129_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185182_2186334_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186425_2186914_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189464_2192014_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192084_2194658_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194923_2195124_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195155_2195317_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195374_2195713_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195861_2196812_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197586_2198255_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2198236_2200192_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2200434_2201184_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201196_2202060_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202063_2203479_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203612_2204341_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204479_2204680_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204855_2205254_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205277_2206678_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206796_2207549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2207837_2208515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208541_2209321_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209317_2210202_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210219_2210999_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210983_2211742_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2211879_2212515_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212782_2213799_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213896_2214937_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215071_2216364_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217723_2218107_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218124_2218712_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218749_2219700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219798_2220749_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	2577580	2644080	4107433	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577580_2578531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578900_2579473_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579475_2580486_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580478_2580979_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580989_2581331_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2581399_2582134_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582150_2582420_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582442_2583231_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583277_2584294_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584510_2585953_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586131_2587751_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587871_2589692_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589770_2591303_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2591336_2592983_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593052_2594075_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594092_2595226_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595228_2595918_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595917_2596703_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596746_2597511_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597549_2598971_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599036_2599741_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599788_2600208_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600220_2600628_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600811_2601522_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601648_2601939_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601956_2602439_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606944_2608099_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608404_2609421_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609667_2610456_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610522_2611203_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611199_2611970_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612068_2613019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613074_2613992_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614002_2615181_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615200_2616196_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617784_2618393_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618380_2619421_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619438_2620401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620397_2621591_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621587_2622385_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622410_2623397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623415_2625455_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2625656_2626337_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626350_2627262_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627258_2627837_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627975_2628881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628888_2632308_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632295_2634896_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635851_2636484_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636877_2637636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2637632_2638835_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639022_2639973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640880_2642026_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642012_2642768_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642884_2643064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643129_2644080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	2672195	2709607	4107433	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672195_2673146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673244_2674195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674287_2674827_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674933_2675278_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675335_2676784_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676971_2677307_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678934_2680113_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680195_2680696_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680805_2681507_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2681518_2681983_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2681997_2682273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682269_2683046_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683074_2683902_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684027_2684498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684624_2685518_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685565_2686747_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686759_2687575_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2687708_2688236_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688232_2688730_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688877_2689255_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689476_2690427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690525_2691137_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691371_2692499_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692609_2693698_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693750_2694602_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694621_2695503_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695679_2696993_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697203_2698037_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698033_2698615_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698968_2699919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699934_2701050_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701152_2702079_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702078_2703317_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703313_2704081_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704081_2704783_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704864_2705311_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2706200_2706839_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707607_2708558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708656_2709607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	2808734	2863251	4107433	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808734_2809685_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810013_2810619_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2810672_2811986_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812060_2812531_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812530_2813319_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813329_2814982_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815069_2816020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817181_2817688_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817684_2818449_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818464_2818749_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818813_2819803_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819974_2820904_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820875_2821562_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821595_2822141_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822185_2823451_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823447_2824350_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825531_2826476_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826570_2828088_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828129_2829758_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829865_2830747_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833859_2834234_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834258_2834597_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834640_2836275_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836313_2837660_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2837767_2839189_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839258_2839843_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839945_2840896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841030_2842137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842147_2843245_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843389_2844595_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844601_2845123_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2845119_2845602_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845607_2845859_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845839_2846325_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846460_2849922_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849939_2850824_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850833_2851265_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851511_2852015_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852092_2853493_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853567_2854443_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854439_2855447_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855914_2856220_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856310_2856901_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857091_2858108_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858299_2860636_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860718_2861153_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861251_2862202_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862300_2863251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	2871276	2928062	4107433	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871276_2872227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873933_2874200_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874907_2875246_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879799_2880402_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880498_2881788_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881845_2882577_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882573_2883377_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883373_2884462_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884458_2885388_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885536_2886682_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886703_2887654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887671_2887830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887984_2891806_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891962_2892631_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892635_2894309_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894327_2895647_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895651_2897967_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898022_2900191_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2900187_2905368_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905466_2905781_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906008_2906254_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906348_2906867_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906966_2908172_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908287_2909685_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909801_2910380_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910452_2911844_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912011_2912962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913242_2913863_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913859_2914273_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914269_2915313_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915368_2915557_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915566_2916331_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916421_2917078_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917169_2917928_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917953_2919555_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919755_2920760_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920860_2921124_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921241_2922018_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922608_2923559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925942_2927055_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927111_2928062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	2958448	3002139	4107433	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958448_2959399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959416_2959566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959519_2960416_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962693_2964919_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965083_2966172_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966128_2966782_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966829_2967627_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968158_2969109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2969189_2970338_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970394_2971345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971443_2971749_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971777_2972212_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972213_2973458_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973454_2974165_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974179_2975091_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975453_2975858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975854_2976313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2976319_2977228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2977224_2978091_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978077_2978905_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978915_2980043_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981120_2982359_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982400_2983663_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983669_2984422_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984473_2984659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984934_2985399_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985430_2986090_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986234_2988343_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988339_2989290_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989393_2990014_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2990117_2990858_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991992_2993117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993162_2993531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993772_2994723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995758_2996301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996498_2996669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996686_2997637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2997633_2998542_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998668_2999505_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000017_3001127_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001188_3002139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	3382084	3435825	4107433	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382084_3383035_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383439_3384084_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384108_3384693_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384793_3385411_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385413_3387129_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387125_3387434_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387450_3388068_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388112_3388415_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388515_3389370_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389557_3389782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389951_3390224_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390641_3391049_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391418_3392213_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392313_3393549_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393617_3394634_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394645_3396022_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396018_3397215_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397211_3398750_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398746_3400006_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401946_3402897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403663_3404758_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404750_3406085_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406038_3406722_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406747_3407911_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3407907_3408909_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408908_3409781_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409777_3410527_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410523_3411315_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411311_3412451_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412726_3413512_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413545_3414328_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414331_3414721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3415860_3416724_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3416759_3417848_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417844_3418795_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419148_3422127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423053_3423932_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425880_3426831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426827_3427295_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427337_3428108_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3428128_3428929_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428939_3430349_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430443_3431229_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431468_3432485_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432592_3432985_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433122_3433803_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433807_3434779_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434874_3435825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	3441980	3501278	4107433	transposase,tRNA	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3441980_3443744_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443855_3444734_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444846_3445662_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445665_3445917_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446001_3447018_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447348_3447570_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449930_3450848_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451345_3452554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452633_3454205_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454322_3455258_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455446_3456391_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456958_3462676_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462681_3463809_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463864_3464491_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3464762_3465779_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465874_3466585_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466581_3467571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467666_3469298_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469300_3470038_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470193_3471066_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3471415_3472555_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472551_3473211_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473282_3473915_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473944_3474463_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474473_3475583_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475629_3476484_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476485_3477388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478610_3479561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481315_3482305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3482480_3483269_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483265_3484297_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484315_3484879_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484934_3486455_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486718_3487423_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3487430_3488159_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488273_3488648_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488690_3489980_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489976_3491146_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491142_3491982_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492041_3492977_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492989_3493940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494038_3495001_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495032_3495392_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495516_3496419_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496420_3498193_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498227_3499004_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500327_3501278_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	3516216	3574289	4107433	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516216_3517167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517295_3518429_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518472_3519378_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519380_3521081_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521077_3521998_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522005_3522983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523041_3524076_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3526050_3526287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526413_3527277_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527365_3528187_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528266_3529004_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3529000_3529993_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3530145_3530769_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530813_3531962_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_077076923.1|3534285_3535236_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535576_3536527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536625_3537576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537872_3538370_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538412_3540188_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540195_3541062_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541068_3541803_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542972_3543767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544056_3544647_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544680_3546009_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546083_3547229_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547340_3548339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548301_3548736_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550252_3551137_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551133_3552339_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552335_3553196_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3553308_3555099_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3555139_3555784_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3555805_3556114_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556279_3557566_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3558999_3559950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561901_3563116_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563221_3564211_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564207_3564816_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564828_3565458_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565454_3566075_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566106_3566898_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567749_3568205_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3568223_3569150_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569203_3570490_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571420_3572293_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572289_3573240_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573338_3574289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP012134	Bordetella pertussis strain I464 chromosome, complete genome	4107433	4006501	4071413	4107433	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4006501_4006987_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4007075_4007213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4007205_4008186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4008452_4009262_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4009301_4009982_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4009975_4010434_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4010445_4010808_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4010890_4011574_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4011629_4011938_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4011956_4012271_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4012267_4014742_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4014749_4016141_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4016137_4016323_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4016301_4017003_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4016999_4017821_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4017801_4018926_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4018918_4019938_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4020143_4021034_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4021278_4022070_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4022152_4022527_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4022504_4023914_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4023906_4025289_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4025623_4027228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4027305_4028277_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4028287_4029214_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4029604_4030555_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030724_4031951_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032150_4033017_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033009_4033972_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034072_4035023_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035121_4036072_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036170_4037121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037117_4038611_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038607_4041715_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4041711_4044780_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044776_4046027_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4046207_4046960_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4047001_4047646_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4047654_4048635_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048734_4049478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4049560_4049908_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050005_4050848_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050892_4051780_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051806_4051995_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052092_4053550_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053536_4055063_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055081_4055549_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4055548_4056571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4056691_4057432_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4057486_4058587_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058588_4059779_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059898_4060915_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061233_4061905_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061901_4062810_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063021_4063669_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4067529_4068597_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068607_4069417_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4069506_4070280_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070280_4070445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070462_4071413_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
