The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	27282	71085	4108471	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|49196_50444_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|50440_51055_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|51190_52141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|52183_53440_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_077074153.1|54671_55406_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|55411_56002_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|56026_56716_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|56712_57474_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|57553_58453_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|58546_59497_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|60297_61524_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|61523_61943_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|62126_63068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|63491_64466_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|64522_65104_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|65116_65419_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|65537_66596_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|66630_67902_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|68531_69713_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|70134_71085_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	78683	137157	4108471	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|78683_79634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|79708_80653_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|80649_82524_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|83871_84576_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|84572_85679_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|85940_86534_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|86530_87718_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|87780_89040_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|89063_90152_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|90159_91260_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|91263_91839_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|91842_92895_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|93025_94033_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|94034_95321_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|95517_96321_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|96317_97184_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|97258_98389_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|98388_99228_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|100160_100763_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|100792_101446_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|101578_102835_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|102915_103782_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|103857_104133_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|104140_104803_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|104864_105866_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|105880_106429_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|106486_107383_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|107379_108441_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|108476_109427_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|110326_111520_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|111601_112231_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|112292_112976_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|112985_114668_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|114955_115303_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|115393_115711_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|115993_117010_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|117085_117886_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|117882_118758_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|118768_120061_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|120103_121144_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|121249_122071_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|122171_123122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|123220_124126_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|124122_124956_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|125792_126803_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|126799_127189_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|128082_129336_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|129426_131127_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|131553_132201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|132199_133639_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|133749_134034_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|134061_134940_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|136206_137157_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	165943	226454	4108471	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|165943_166894_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|168337_169240_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|169217_169847_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|170129_171560_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|171593_172223_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|172271_173879_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|173903_174587_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|174668_175145_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|175351_176302_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|177417_177945_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|178036_178852_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|178912_179647_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|179684_181763_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|182012_182285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|182386_183472_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|183475_185380_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|185376_189051_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|189111_189675_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|189682_190105_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|190132_190552_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|190580_191027_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|191153_191651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|191805_194076_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|194151_195357_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|195455_196406_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|196508_197144_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|197140_198034_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|198428_199529_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|199610_199985_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|200044_202909_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|203053_203794_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|203863_205075_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|205103_206072_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|206685_207636_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207792_208116_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208220_209261_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209266_210046_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210091_210388_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210413_210689_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210745_211390_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211389_212076_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212274_213057_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213107_213833_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213864_215214_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215325_216258_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|216715_219511_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|220104_222948_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|223118_223838_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|223876_224425_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|224579_225479_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|225503_226454_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	234386	287974	4108471	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|234386_235337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235423_236374_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236370_237321_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237419_238217_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239166_239577_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240598_241342_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241385_242429_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242599_244702_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246112_247069_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247087_247579_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247575_248931_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248931_249630_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249626_250328_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250580_251630_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251735_252677_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252673_254563_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254649_255288_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255430_256816_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256746_257283_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257434_258826_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258842_259823_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259958_260942_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261006_261906_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262012_263767_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263774_264899_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264912_265893_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266623_267574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268133_268679_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268804_270382_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270397_271552_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271565_271691_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271687_273439_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273435_275115_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275177_275726_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276868_277147_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278190_279141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279127_279343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279418_279580_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280246_280696_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280705_281317_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281475_282324_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282349_283732_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283796_284438_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284577_285036_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285060_285837_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285890_287027_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287023_287974_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	355968	415436	4108471	tRNA,transposase	Streptococcus_phage(50.0%)	56	NA	NA
WP_010929969.1|355968_356919_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929759.1|357030_357753_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815420.1|357851_358595_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010929760.1|358825_360334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815418.1|360453_361185_+	iron-containing redox enzyme family protein	NA	NA	NA	NA	NA
WP_010929761.1|361229_362690_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929762.1|362714_363194_+	heme-binding protein	NA	NA	NA	NA	NA
WP_003817846.1|363212_364223_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929763.1|364437_365178_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023997839.1|365384_366395_+	beta-propeller fold lactonase family protein	NA	NA	NA	NA	NA
WP_010929765.1|366354_367305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929766.1|368353_368992_+	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_010929767.1|369028_370372_-	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_010929768.1|370794_371583_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	25.7	1.2e-19
WP_010929769.1|371720_372395_+	orotate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_010929770.1|372508_373963_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_010929771.1|373965_375504_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_010929772.1|375506_375815_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_003815204.1|376045_377089_+	rod shape-determining protein	NA	NA	NA	NA	NA
WP_010929773.1|377177_378062_+	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003815202.1|378048_378612_+	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_003815201.1|378625_380578_+	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_003815198.1|380574_381711_+	rod shape-determining protein RodA	NA	NA	NA	NA	NA
WP_010929775.1|381736_382792_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929776.1|382802_384296_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_010927138.1|384508_385084_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA	NA
WP_010929777.1|385133_385880_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA	NA
WP_010929778.1|385879_386782_-	acetylglutamate kinase	NA	NA	NA	NA	NA
WP_010929779.1|387043_387832_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003815191.1|387972_388464_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003815190.1|388460_389204_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_033446211.1|389200_389794_-	phosphoheptose isomerase	NA	A0A067XQR2	Caulobacter_phage	34.8	5.6e-17
WP_100208326.1|389802_390279_-	YraN family protein	NA	NA	NA	NA	NA
WP_010929780.1|390403_391342_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA	NA
WP_010929781.1|391338_391911_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.5	3.2e-25
WP_005012067.1|391907_392858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392994_393912_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393908_394157_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394153_395359_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395431_396427_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396449_397670_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397666_398311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400041_400851_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401155_402109_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402207_403191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403117_403819_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403867_404638_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404634_405813_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405980_407687_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407683_408580_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408620_410210_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410259_411252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411320_411920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412380_413361_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|413436_414387_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|414485_415436_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	470600	588495	4108471	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_005012067.1|470600_471551_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|471649_472600_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|473322_474597_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|474683_475766_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|475776_476589_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|476625_476952_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|476956_477517_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|477757_478750_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|478768_479764_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|479779_481156_+	FAD binding domain in molybdopterin dehydrogenase	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|481148_483530_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|483546_483936_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|484062_484293_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|484397_485348_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|485446_486397_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|486393_487266_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|488196_489483_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|489536_490463_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|490481_490937_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_003815177.1|491788_492580_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|492611_493232_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|493228_493858_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|493870_494479_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|494475_495465_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|495570_496785_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|498736_499687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|501120_502407_+	membrane protein	NA	NA	NA	NA	NA
WP_010929971.1|502572_502881_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446243.1|502902_503547_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_003807038.1|503587_505378_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|505490_506351_+	endonuclease	NA	NA	NA	NA	NA
WP_010929973.1|506347_507553_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|507549_508434_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|509950_510385_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|510347_511346_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|511457_512603_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|512677_514006_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|514039_514630_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|514919_515714_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|516883_517618_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|517624_518491_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|518498_520274_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|520316_520814_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|521110_522061_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|522159_523110_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|523450_524401_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|526724_527873_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931398.1|527917_528541_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|528693_529686_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|529682_530420_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003815315.1|530499_531321_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|531409_532273_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|532399_532636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|534610_535645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003817805.1|535703_536681_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|536688_537609_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|537605_539306_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|539308_540214_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|540257_541391_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|541519_542470_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|542568_544638_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|544680_546783_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|547089_548166_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|548241_549126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|549308_549731_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|549740_551141_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|551183_552089_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|552187_553729_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|553763_554303_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|554315_554786_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|554923_555166_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|555282_556164_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|556236_556557_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_005012808.1|557408_558359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|559682_560459_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|560493_562266_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|562267_563170_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|563294_563654_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|563685_564648_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|564746_565697_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|565709_566645_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|566704_567544_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|567540_568710_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|568706_569996_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|570038_570413_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_023852620.1|570527_571256_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|571263_571968_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|572231_573752_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|573807_574371_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|574389_575421_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|575417_576206_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_023997720.1|576381_577371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|579127_580078_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|581300_582203_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|582204_583059_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|583105_584215_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|584225_584744_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|584773_585406_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|585477_586137_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_023852703.1|586133_587273_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|587622_588495_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 7
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	592909	656742	4108471	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|592909_593926_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|594197_594824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931367.1|594879_596007_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|596012_601730_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|602297_603242_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|603430_604366_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|604483_606055_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|606134_607343_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|607840_608758_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|611118_611340_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|611670_612687_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|612771_613023_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|613026_613842_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|613954_614833_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|614944_616708_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|616823_618164_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|619233_620658_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|620657_621359_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|622863_623814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|623909_624881_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|624885_625566_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|625703_626096_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|626203_627220_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|627459_628245_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|628339_629749_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|629759_630560_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|630580_631351_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010931354.1|631393_631861_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|631857_632808_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|634756_635635_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|636561_639540_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|639893_640844_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|640840_641929_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|641964_642828_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931351.1|643967_644357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486103.1|644360_645143_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|645176_645962_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|646237_647377_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|647373_648165_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|648161_648911_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|648907_649780_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|649779_650781_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|650777_651941_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003808193.1|651966_652650_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|652603_653938_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|653930_655025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|655791_656742_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	675653	752963	4108471	protease,integrase,tRNA,transposase	Bacillus_phage(20.0%)	57	722790:722808	742678:742696
WP_023995489.1|675653_676604_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|676702_678178_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|679765_680653_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|680655_681597_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|681642_683208_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|684985_686311_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|686493_687951_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|687914_688412_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|688442_689414_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_023994724.1|689466_689898_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|690027_690696_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|691424_692528_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_010931326.1|692633_693908_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|693919_694945_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|694946_696317_+	membrane protein	NA	NA	NA	NA	NA
WP_010931324.1|696317_697454_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|697500_699426_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|699422_700544_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|700540_701695_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|701691_702822_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|702829_704395_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|704401_705784_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|706062_706674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|706765_708181_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|708198_708909_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|708905_710228_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|710307_712269_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|712394_713708_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|713816_715115_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|715297_716206_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|716215_716425_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|716436_718116_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|718217_719171_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|719261_720089_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|720087_721974_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|721970_722570_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|722618_723518_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
722790:722808	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|723726_724677_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|724799_725414_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|725542_726139_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|726135_726918_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|726990_728082_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|728361_729489_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|729830_730877_+	Fic family protein	NA	NA	NA	NA	NA
WP_019247951.1|731387_734144_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|734145_737097_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|737112_738324_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_076879586.1|738320_738521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|738507_739458_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|739474_739969_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|739972_740230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|740773_741685_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|741766_742051_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|742834_743785_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
742678:742696	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_158515216.1|744203_748667_-	BB0916 family autotransporter	NA	NA	NA	NA	NA
WP_014905963.1|748999_750571_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_077074154.1|752012_752963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	871182	935016	4108471	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005012067.1|871182_872133_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|872231_873182_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931247.1|873280_874144_-	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_010931246.1|874140_875040_-	TonB family protein	NA	NA	NA	NA	NA
WP_014486102.1|875077_876961_-	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931244.1|877032_877626_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003814955.1|877636_879007_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_023853327.1|879089_879638_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814953.1|879716_880151_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_003814952.1|880240_880690_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814951.1|880699_882046_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010931242.1|883011_884109_+	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|884120_885062_+	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931240.1|885234_885738_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_003814943.1|886018_886258_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_019248818.1|886235_887411_+	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_010931239.1|887540_888668_+	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_023853325.1|888687_890142_+	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_023853329.1|890149_890710_-	YggT family protein	NA	NA	NA	NA	NA
WP_010931236.1|890863_891391_-	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_003814929.1|891708_892905_-	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931235.1|892926_895854_-	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_019247415.1|896159_899222_-	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_003814925.1|899783_900236_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_023998238.1|900437_900947_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931233.1|901015_902203_+	MFS transporter	NA	NA	NA	NA	NA
WP_033446281.1|902206_903613_-|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931231.1|903748_906208_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|906204_907155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931230.1|907253_907928_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931229.1|908224_909721_+	membrane protein	NA	NA	NA	NA	NA
WP_003820592.1|909837_911226_+	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_003820593.1|911331_911721_+	VOC family protein	NA	NA	NA	NA	NA
WP_003820594.1|911732_912425_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_010931228.1|912439_913276_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931227.1|913278_914088_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931226.1|915344_916019_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853313.1|916032_916584_-	ribosome-associated protein	NA	NA	NA	NA	NA
WP_004567741.1|916642_918007_+|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_004567739.1|918348_919446_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010927106.1|919741_920170_+	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_010931224.1|920179_920572_+	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_003820599.1|920760_921825_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931223.1|921861_922608_+	membrane protein	NA	NA	NA	NA	NA
WP_003814883.1|922695_923067_+	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931222.1|923136_924273_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_010931221.1|924278_925694_-	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_005012067.1|925785_926736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814877.1|927003_928233_+|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003820605.1|928268_928925_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814873.1|929144_930392_+	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003814871.1|930549_931032_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_023853315.1|932026_932590_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_047122802.1|932795_933920_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_005015810.1|934065_935016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	999946	1102339	4108471	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|999946_1001062_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1001162_1001981_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1002078_1002690_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1002849_1004226_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1004288_1004747_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1004831_1005527_-	cytochrome b561	NA	NA	NA	NA	NA
WP_003813010.1|1005588_1005870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1006432_1007185_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1007229_1008306_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1008302_1009253_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1009355_1010018_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1010112_1010283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1010635_1011637_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1011639_1012836_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1012856_1013660_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_019247598.1|1013740_1014037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1014067_1014631_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1014671_1015529_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1015536_1016286_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1016307_1017180_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1017208_1017988_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1018021_1018819_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1021473_1021866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1021859_1022720_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1022723_1023686_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1024462_1025152_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1026012_1026963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1027312_1028182_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1028252_1028948_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1028937_1029447_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1029443_1030664_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1030611_1031514_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1032400_1033687_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1033725_1035099_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1035137_1035839_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1036137_1037127_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1037227_1037689_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1037704_1038253_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931172.1|1038394_1039870_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1039975_1041067_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1041070_1041853_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1041862_1042651_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1043776_1044211_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1044207_1045218_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1045261_1046188_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1046474_1046843_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1047059_1048010_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1048054_1050481_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1050529_1051222_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1051294_1052494_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1052511_1053417_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1053532_1054462_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1054487_1055834_+	MFS transporter	NA	NA	NA	NA	NA
WP_019247888.1|1055846_1056611_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931159.1|1056624_1057407_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1057599_1058550_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1058611_1059721_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1060233_1061070_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931157.1|1061196_1062105_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1062101_1063052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1063437_1063980_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1065015_1065966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1066207_1066576_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1066621_1067746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003820818.1|1068880_1069621_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1069724_1070345_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1070448_1071399_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1071395_1073504_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1073648_1074308_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1074339_1074804_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1075079_1075265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1075316_1076069_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1076075_1077338_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1077379_1078618_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1079695_1080823_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1080833_1081661_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1081647_1082514_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1083880_1084285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1084376_1085327_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1085696_1086608_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1086622_1087333_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1087329_1088574_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1088575_1089010_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1089038_1089344_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010929591.1|1089442_1090393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|1090449_1091598_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1091678_1092629_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1093160_1093958_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1094005_1094659_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1094615_1095704_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1095868_1098094_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1100371_1101268_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1101388_1102339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	1132725	1202647	4108471	protease,transposase	uncultured_Mediterranean_phage(25.0%)	51	NA	NA
WP_005012808.1|1132725_1133676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1133732_1134845_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1137228_1138179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1138769_1139546_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1139663_1139927_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1140027_1141032_-	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1141232_1142834_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1142859_1143618_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1143709_1144366_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1144456_1145221_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1145230_1145419_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1145474_1146518_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1146514_1146928_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1146924_1147545_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1147825_1148776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1148943_1150335_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1150407_1150986_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1151102_1152500_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1152615_1153821_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1153920_1154439_-	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1154533_1154779_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1155006_1155321_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_023853340.1|1155419_1160600_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1160596_1162765_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1162820_1165136_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1165140_1166460_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1166478_1168152_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1168156_1168825_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1168981_1172803_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1173133_1174084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1174105_1175251_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1175399_1176329_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1176325_1177414_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1177410_1178214_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1178210_1178942_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1178999_1180289_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1180385_1180988_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1185541_1185880_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1186587_1186854_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1188560_1189511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1189507_1190839_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1192099_1194100_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1194092_1194734_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1194730_1195138_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1195134_1195935_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1196009_1196714_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1196745_1197540_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931070.1|1197536_1198487_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1198585_1199020_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1199102_1201439_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1201630_1202647_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	1250041	1330916	4108471	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1250041_1250992_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1250988_1251939_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1252199_1253228_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1253307_1254606_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1254602_1255184_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1255496_1259543_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1259783_1267445_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1267441_1268392_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1269531_1270005_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1270144_1270765_-	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931063.1|1270900_1271701_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1271755_1272847_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931062.1|1272868_1273312_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1273340_1273973_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1274083_1274500_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1274492_1275185_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1275291_1275666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931058.1|1275742_1276552_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1276647_1277592_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1277630_1278602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1278692_1279130_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1279188_1280070_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1281073_1281934_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1281966_1283349_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1283345_1284365_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1284737_1285232_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1285239_1285980_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1286060_1287665_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1287704_1288493_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_023995127.1|1288618_1290784_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931047.1|1291664_1292477_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1292489_1292798_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1292915_1294646_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931045.1|1294647_1295850_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931044.1|1295922_1296591_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1296712_1297180_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1297315_1298698_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1298694_1299819_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1299815_1302452_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1302867_1303818_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1307564_1308176_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1308398_1309859_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1309955_1311548_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1311901_1312159_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1312160_1313501_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1313596_1314286_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1314298_1315729_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1317453_1318275_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1318285_1319857_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1319885_1320863_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1320889_1321693_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1321689_1322484_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1322491_1323727_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1323740_1324154_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1324903_1325854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1326475_1328203_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1328314_1329673_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1329965_1330916_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	1450311	1502464	4108471	tRNA,transposase	Salmonella_phage(25.0%)	44	NA	NA
WP_005013747.1|1450311_1451262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1451428_1451782_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1451794_1452157_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1452198_1452624_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1452826_1454083_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1454281_1455262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1455411_1456653_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1456751_1457702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1457710_1458406_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1461227_1461827_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1461837_1464003_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1464026_1465811_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1465810_1465900_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1466594_1466867_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1466866_1468933_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1468929_1469880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1469978_1470929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1471044_1471377_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1471373_1472060_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1472046_1473006_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1473038_1475408_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1475407_1476040_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1476141_1477482_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1477528_1478884_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1479174_1479411_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1479598_1479916_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1480188_1480704_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1480974_1481730_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1482068_1482275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1482282_1482942_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1483236_1485441_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1485551_1486775_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1486897_1487872_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1487939_1489133_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1489147_1489948_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1489944_1491801_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1491797_1492403_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1492421_1493807_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1494532_1495759_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1495847_1496630_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1496728_1497679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1497705_1498479_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1498490_1499732_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1501513_1502464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	1546389	1614475	4108471	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1546389_1546878_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1546995_1547574_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1547679_1548048_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1548146_1549097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1549103_1550216_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1550902_1552105_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1552308_1554969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1554981_1558386_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1559053_1561279_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1561325_1561652_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1561702_1562311_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1562409_1563360_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1563429_1564194_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1564190_1564727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1564893_1565745_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1565804_1566431_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1566427_1567378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1567476_1568589_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1568578_1569580_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1569685_1571197_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1571193_1572498_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1572609_1573170_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1573437_1573992_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1574447_1574663_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1574917_1577515_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1577511_1578699_+	cupin	NA	NA	NA	NA	NA
WP_019248658.1|1579357_1579972_+	fimbrial protein	NA	NA	NA	NA	NA
WP_023994740.1|1580060_1581182_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1581199_1582105_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1582997_1583948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1584129_1584882_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1584950_1585610_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1585606_1586335_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1586347_1588627_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1588651_1588855_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1588896_1589529_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1589664_1590582_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1590578_1591292_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1591529_1592300_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1592304_1592904_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1593148_1594639_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1594697_1594982_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1595547_1596474_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1596610_1597351_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1597517_1598894_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1599075_1599981_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1601632_1603435_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1603552_1604203_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1604301_1605252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1605273_1606494_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1606679_1608092_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1608155_1609223_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1609222_1610710_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1610719_1611664_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1611823_1612522_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1612599_1613505_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1613524_1614475_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	1650424	1706015	4108471	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1650424_1651375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1651433_1652207_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1652199_1653756_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1653752_1654703_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1656029_1656632_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1656871_1657573_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1657566_1658349_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1658533_1659484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1659582_1660320_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1660509_1661268_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1661314_1662304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1662481_1663450_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1664989_1665958_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1665966_1666908_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1667381_1668392_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1668382_1669897_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1669893_1671240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1671242_1672277_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1672326_1673952_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1674504_1675455_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1675559_1676507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1676560_1678375_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1678367_1679042_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1679171_1682246_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1682259_1682559_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1682873_1683497_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1683740_1684610_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1684587_1685532_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1685617_1686544_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1686656_1687436_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1687426_1688623_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1688653_1689604_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1689825_1690515_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1690579_1691335_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1691386_1692379_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1692388_1693342_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1693457_1694420_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1695821_1696250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1696246_1697197_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1697490_1698213_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1698651_1699839_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1699842_1700193_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1701942_1702914_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1702927_1703641_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1703645_1704563_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1704669_1704966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1705064_1706015_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	1939805	2009457	4108471	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1939805_1942463_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1942540_1943743_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1943739_1944252_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1944374_1944812_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1945088_1946039_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1946137_1947088_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853105.1|1947251_1949147_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_010930711.1|1949260_1949428_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1949491_1949728_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_033446265.1|1950096_1951248_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1952811_1953762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1954213_1955215_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1955387_1956245_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1956241_1957504_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1957604_1957979_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_010930713.1|1958051_1959239_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1959323_1960094_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1960207_1960972_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1960922_1962224_+	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930717.1|1962220_1963027_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_003818532.1|1964771_1965743_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1965899_1966412_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1966570_1967545_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1968545_1969340_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1969365_1970172_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1970282_1970873_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1970883_1972062_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1972164_1972539_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1972791_1974123_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1974189_1977420_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1978910_1979657_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1979741_1980203_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1980240_1981299_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1981261_1983091_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1983130_1983703_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1985127_1985949_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1986267_1987590_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1987949_1988585_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1988544_1989495_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1990365_1991238_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1991315_1992455_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1992813_1994070_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1994075_1994603_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1994607_1995426_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1995425_1996148_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1996169_1996484_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1996501_1997650_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1997680_1998556_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1998552_1999872_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1999944_2001141_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2001151_2002639_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2005233_2006133_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2006270_2007236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2007334_2008285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2008506_2009457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2020953	2070349	4108471	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2020953_2021904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2023041_2023338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2023512_2024865_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010929632.1|2025007_2026024_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2028003_2029017_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930749.1|2029103_2030009_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2030165_2030510_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2030667_2031126_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2031139_2033356_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2033352_2034414_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2034442_2035417_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2035368_2036187_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2036199_2036808_-	peptidase S16	NA	NA	NA	NA	NA
WP_010930754.1|2036982_2037378_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2037396_2038836_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2038864_2039212_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2039230_2040181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2040833_2041784_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2041867_2043685_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2043758_2044406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2044418_2045348_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2045517_2045982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2046229_2046910_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2046958_2048650_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2048665_2049217_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2049213_2049585_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2049697_2050534_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2050544_2051069_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2051166_2051346_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2051475_2052450_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2052580_2052937_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2052926_2053802_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2053900_2054785_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2054806_2056102_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2057050_2057701_+	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930767.1|2057788_2059309_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2059566_2061432_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2062477_2063428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2063445_2063586_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2064400_2064760_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2064747_2066184_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2066180_2066834_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2066830_2068024_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2068127_2069402_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2069398_2070349_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2081553	2149929	4108471	protease,tRNA,transposase	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2081553_2082504_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2082463_2082877_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2083161_2083461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2083870_2086153_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2086618_2086813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2086838_2088869_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2088888_2089101_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2089378_2089918_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2090031_2091327_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2091403_2092561_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2092744_2093644_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2093662_2094967_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2094932_2096039_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2096126_2096363_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2096501_2097572_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2097575_2098931_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_023852925.1|2098957_2100115_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2100120_2100759_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_033446258.1|2100760_2102056_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_033446257.1|2102105_2103392_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2103407_2103914_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2103910_2105059_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2105086_2105512_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2105834_2108717_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2108809_2109565_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2110330_2111680_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2111778_2112729_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2112827_2113778_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2113851_2114325_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2114350_2115559_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2115555_2116329_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2116328_2116952_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2117117_2117378_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2117681_2118263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2118329_2118584_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2118570_2121195_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2121266_2122085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2122081_2122687_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2122724_2123858_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2125573_2125948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2126045_2127320_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2127323_2128901_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2129807_2131163_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2131159_2132794_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2132786_2133617_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2133634_2134579_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2134631_2136206_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2136253_2136613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2136605_2136926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2137041_2137974_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2138076_2139033_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2139182_2140520_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2140524_2141781_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2141976_2143023_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2143080_2143449_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2143579_2144452_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2144528_2145431_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2146487_2147705_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2148978_2149929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2165207	2230028	4108471	protease,tRNA,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2165207_2166158_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2166728_2166941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2166958_2167690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2167724_2168366_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2168358_2169027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2171239_2172016_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2172037_2173195_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2173191_2173623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930562.1|2173619_2174417_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2174436_2174838_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2174904_2175876_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2175941_2177165_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2177392_2178343_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2178466_2180920_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2181108_2182413_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2182517_2183171_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2183173_2184484_-	trigger factor	NA	NA	NA	NA	NA
WP_076879561.1|2184662_2185241_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2185352_2185553_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2185898_2186465_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2186548_2186752_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2187058_2187379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2187420_2187702_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2187776_2189033_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2189415_2189745_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2191315_2192137_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2192136_2193276_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2193282_2194179_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_033446179.1|2194193_2196101_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2196460_2199073_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2199125_2201426_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2201422_2202631_-	aminotransferase	NA	NA	NA	NA	NA
WP_010930545.1|2202892_2203267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2203263_2204214_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2204312_2206307_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2206366_2207332_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2207321_2210183_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2210185_2210692_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2210796_2212005_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2212006_2212945_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2213106_2213580_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2213576_2214527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2214637_2215078_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2215206_2216436_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2216474_2217296_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2217349_2218501_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2218592_2219081_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2221631_2224181_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2224251_2226825_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2227090_2227291_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2227322_2227484_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2227541_2227880_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2228028_2228979_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2229077_2230028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2508174	2566418	4108471	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2508174_2509125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2509604_2510261_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2510275_2511943_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2511945_2512575_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2512786_2513881_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2514025_2514838_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2514841_2516425_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2516595_2517726_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2517912_2518989_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2519070_2519721_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2519735_2521139_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2521422_2522241_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2522237_2522942_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2523841_2524957_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2524990_2525365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2525387_2526545_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2526557_2526791_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2527425_2530395_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2530409_2530619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2530770_2531400_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2531396_2533454_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2533510_2534191_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2534187_2534748_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2534754_2535852_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2536004_2536598_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2536594_2537887_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2537900_2538443_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2538452_2539289_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2539322_2540384_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2540425_2541478_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2541493_2541796_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2541937_2542888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2543066_2544761_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2544757_2545843_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2545890_2546790_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2546800_2547445_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2548466_2551709_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2551719_2552874_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2553100_2554063_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_077074155.1|2554161_2555112_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2555210_2556161_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2556170_2556860_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2556919_2557357_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2557402_2558296_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2558343_2559516_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2559512_2560667_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2560863_2561214_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2561203_2561638_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2561654_2562605_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2562752_2563220_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2563200_2564358_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2564423_2565350_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2565467_2566418_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2608698	2675198	4108471	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2608698_2609649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2610018_2610591_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2610593_2611604_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2611596_2612097_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2612107_2612449_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2612517_2613252_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2613268_2613538_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2613560_2614349_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2614395_2615412_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2615628_2617071_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2617249_2618869_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2618989_2620810_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2620888_2622421_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2622454_2624101_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2624170_2625193_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2625210_2626344_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2626346_2627036_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2627035_2627821_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2627864_2628629_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2628667_2630089_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2630154_2630859_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2630906_2631326_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2631338_2631746_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2631929_2632640_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2632766_2633057_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2633074_2633557_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2638062_2639217_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2639522_2640539_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2640785_2641574_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2641640_2642321_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2642317_2643088_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2643186_2644137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2644192_2645110_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2645120_2646299_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2646318_2647314_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2648902_2649511_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2649498_2650539_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2650556_2651519_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2651515_2652709_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2652705_2653503_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2653528_2654515_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2654533_2656573_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2656774_2657455_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2657468_2658380_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2658376_2658955_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2659093_2659999_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2660006_2663426_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2663413_2666014_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2666969_2667602_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2667995_2668754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2668750_2669953_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2670140_2671091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2671998_2673144_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2673130_2673886_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2674002_2674182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2674247_2675198_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2837762	2903345	4108471	tRNA,transposase	Oenococcus_phage(33.33%)	52	NA	NA
WP_023853639.1|2837762_2838713_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2838811_2839762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930231.1|2839964_2840954_+	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_010930230.1|2841037_2841391_+	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930229.1|2841468_2842077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811662.1|2843750_2844329_-	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_003811660.1|2844353_2845307_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930228.1|2845346_2846264_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_033446252.1|2846385_2847312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930226.1|2847319_2848066_-	aldolase	NA	NA	NA	NA	NA
WP_010930225.1|2848392_2849334_+	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930224.1|2849560_2851258_-	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930223.1|2851692_2853114_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930222.1|2853267_2854047_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247966.1|2854171_2855050_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930220.1|2855155_2856280_+	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_003811636.1|2856325_2857288_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930219.1|2857280_2858135_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811632.1|2858242_2858653_+	VOC family protein	NA	NA	NA	NA	NA
WP_010929956.1|2858649_2859600_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2859698_2860580_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2860657_2862037_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2862075_2862921_-	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|2862936_2863251_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2863283_2863820_-	membrane protein	NA	NA	NA	NA	NA
WP_003813585.1|2863992_2864568_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2864670_2865408_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2865475_2867113_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2867220_2867976_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2867963_2868926_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_033446255.1|2869033_2869828_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2869889_2871965_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2872129_2874505_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930211.1|2874585_2875941_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2877419_2878142_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2878196_2879180_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2879309_2880260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2880256_2881159_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2881246_2882005_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2882017_2883109_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2883206_2884634_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2884863_2886078_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2886123_2888994_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2891404_2891893_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2892018_2894715_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2894869_2897152_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930199.1|2897315_2897948_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930198.1|2898046_2898997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2899043_2899598_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2899665_2900511_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2900580_2901549_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023853221.1|2901548_2903345_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2920915	2981942	4108471	tRNA,holin,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930190.1|2920915_2922436_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2922478_2922781_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2922777_2923410_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2923488_2925354_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2925350_2926145_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2926173_2927289_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2928193_2929072_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2929071_2929896_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2930063_2931014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2931226_2934076_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2934057_2934786_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2934926_2936390_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2936386_2936758_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2936775_2938089_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2938125_2938584_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2938696_2939647_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2939643_2940657_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2940796_2941783_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2942141_2942849_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2943429_2944380_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2944531_2945134_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2945152_2945785_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2945829_2946081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2946022_2947909_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|2947927_2948770_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|2948766_2950125_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|2950345_2951140_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|2951370_2952864_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|2953099_2955181_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|2955375_2956416_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|2956550_2957567_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|2957588_2958446_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|2958490_2959267_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_005013747.1|2959634_2960585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2960611_2961076_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2962282_2964571_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2964687_2965560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2965602_2966757_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2966791_2967622_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2967705_2969250_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2969292_2969652_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2969653_2970067_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2970107_2970425_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2970509_2971226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2971489_2972911_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|2972977_2975725_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|2976057_2977074_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2977409_2978051_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2978141_2979578_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2979735_2980809_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2980805_2981942_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
>prophage 25
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	2985695	3058212	4108471	tRNA,transposase	Pseudomonas_phage(14.29%)	60	NA	NA
WP_010931363.1|2985695_2986712_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2987649_2989077_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2989073_2990096_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2990085_2990559_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2990699_2991587_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2991583_2993227_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_003819773.1|2993223_2994231_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2995061_2996078_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2996177_2996810_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2996818_2997208_-	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2997260_2998313_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2999176_3000883_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3000956_3001457_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3001471_3003529_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3003555_3003849_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3003950_3004898_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3004910_3005786_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3005906_3006467_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3006501_3006825_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3007260_3007998_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3008296_3009247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3009490_3009754_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3009827_3010109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3010125_3010986_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3010982_3011318_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3011371_3012022_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_019247197.1|3013702_3014647_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003809467.1|3014692_3015010_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930139.1|3015012_3015951_-	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003819814.1|3016128_3016614_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930138.1|3016632_3017181_+	diguanylate cyclase	NA	NA	NA	NA	NA
WP_023994624.1|3017212_3017365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930137.1|3018694_3019336_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3019490_3021839_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3021835_3022774_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3022799_3023990_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3023986_3024760_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3024789_3025983_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3026100_3027111_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3027128_3029165_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3029359_3030100_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929584.1|3030198_3031149_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3031191_3032367_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3032588_3034379_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3034391_3036053_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3036065_3038771_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3039063_3040818_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3040814_3041441_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3041437_3042289_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930125.1|3042418_3044479_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3044665_3045280_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3045425_3045677_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3045746_3047129_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3047125_3050305_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3051112_3052030_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3052081_3052813_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3052872_3053445_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3054953_3055970_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3056107_3057157_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3057261_3058212_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	3077612	3142552	4108471	transposase	Bacillus_phage(18.18%)	57	NA	NA
WP_005012067.1|3077612_3078563_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3078661_3079246_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3079280_3080270_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3080266_3081208_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3081204_3082425_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3082467_3082782_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3082973_3083333_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3083334_3085050_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3085237_3085909_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3085923_3087252_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3087248_3088148_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3088234_3089320_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_023852687.1|3089312_3090443_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	4.9e-78
WP_010930095.1|3090445_3093127_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3093497_3094079_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3094204_3094930_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3094926_3095604_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3095819_3097001_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3097773_3097956_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3097985_3098936_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3099065_3099458_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3099734_3100646_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3100770_3101745_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3101741_3102692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3102790_3103876_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3103973_3104384_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3104999_3106913_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3107048_3109661_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3109662_3110397_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3110560_3111742_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3111738_3111951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3111947_3112928_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3112973_3113801_-	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3113950_3115765_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3115819_3116203_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3116199_3117150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3117262_3117514_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810837.1|3117707_3117923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3118019_3119138_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3119257_3119470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3119629_3119851_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3119903_3120854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3122030_3123401_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3123433_3124225_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3124237_3125293_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3125318_3126194_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3126299_3126548_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3126582_3128037_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3128033_3128555_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3128583_3129936_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3130159_3133048_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3135192_3136494_+	phospholipase	NA	NA	NA	NA	NA
WP_010930055.1|3136508_3137225_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3137506_3138187_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930052.1|3138714_3139374_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3139772_3141605_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3141601_3142552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	3234175	3298276	4108471	transposase	Klosneuvirus(16.67%)	51	NA	NA
WP_010929591.1|3234175_3235126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3235224_3236175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3236171_3237191_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3237200_3239909_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3240056_3240713_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3240811_3241762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3241909_3242803_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3243002_3244697_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3244731_3245658_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3245726_3246824_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3246842_3247706_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3247717_3248500_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3248496_3249615_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3249611_3251144_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3251184_3252192_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3252336_3253059_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3253074_3254097_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3254413_3255148_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3255232_3256978_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3256974_3257727_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3257771_3258728_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3258816_3259383_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3259390_3260251_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3260280_3261009_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3261040_3261724_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3262561_3263476_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3263540_3264449_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3264539_3265964_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3265965_3267288_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3267284_3269423_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3269500_3274621_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_153302771.1|3274721_3275030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929994.1|3275099_3275657_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3275672_3277154_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023853308.1|3277208_3279062_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929992.1|3279324_3280662_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3280696_3282694_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3282711_3284760_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3284890_3285757_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3286025_3286991_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3287105_3288254_-	fumarylacetoacetate hydrolase	NA	NA	NA	NA	NA
WP_003807462.1|3288678_3288990_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3289023_3289284_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3289433_3290567_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3290637_3291774_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3291939_3292734_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3292796_3293240_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3293355_3294306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_020699729.1|3294428_3294836_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929984.1|3294908_3297104_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3297325_3298276_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	3319673	3419785	4108471	terminase,tRNA,tail,transposase,protease	uncultured_Caudovirales_phage(14.29%)	107	NA	NA
WP_005012067.1|3319673_3320624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3321355_3321733_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3321717_3322419_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3322562_3323255_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3323254_3324358_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3324467_3326840_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3326836_3328396_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3328420_3329218_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3329249_3330395_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3330499_3331942_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3331944_3333174_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3335311_3336262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3337391_3337949_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3337924_3338275_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3338443_3339238_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3339234_3340284_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3340283_3340973_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3341059_3341557_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3341588_3342905_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3342921_3343896_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3343932_3344391_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3344390_3345071_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3345073_3345502_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3345554_3347285_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3347350_3347923_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3347903_3348590_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3348945_3349617_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3349945_3350167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3350166_3350448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3350444_3350960_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3350959_3351511_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3351489_3351732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3351736_3352549_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3352548_3352812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3352852_3353050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3353030_3353447_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3353451_3357408_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3357400_3357790_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3357786_3358320_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3358387_3358747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3358756_3361369_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3361394_3361685_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3361702_3362032_-	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3362041_3362560_-	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3362814_3363315_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3363322_3363745_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3363741_3364140_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3364136_3364532_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_162096760.1|3364531_3364720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3364733_3365216_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3365278_3365530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3366204_3367155_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3367583_3368186_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3368308_3368551_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3368556_3369612_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3369640_3371059_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3371061_3372339_-|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3372325_3372811_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3373450_3374401_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3374657_3375347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3375339_3375591_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010931451.1|3376145_3376757_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3376828_3377035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3377286_3378237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3378335_3379409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3379576_3380371_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3380410_3380935_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3380927_3382670_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3382879_3383638_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3383640_3384348_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3384364_3385246_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3385256_3386015_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3385983_3386739_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3386808_3388227_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3388248_3388899_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3389032_3389368_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3389456_3390407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3390483_3392304_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3392308_3393382_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3393504_3394473_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3394546_3395458_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3395476_3396049_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3396129_3396678_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3396677_3398267_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3398336_3398576_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3398616_3399642_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3399707_3400889_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3400985_3401438_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3401447_3402788_-	M24 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931461.1|3403104_3404142_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3404523_3404883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3404966_3405908_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3405982_3406933_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3407226_3408321_+	porin	NA	NA	NA	NA	NA
WP_033446149.1|3408411_3409284_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3409305_3410145_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3410220_3411738_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3411834_3412935_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3412951_3413374_-	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_003814195.1|3413396_3413609_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3413654_3414575_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3414757_3415507_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3415509_3415839_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_033446148.1|3416126_3417479_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814185.1|3417490_3417874_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3417935_3418736_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3418834_3419785_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP012129	Bordetella pertussis strain G057 chromosome, complete genome	4108471	4007539	4072451	4108471	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4007539_4008025_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008113_4008251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008243_4009224_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009490_4010300_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010339_4011020_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011013_4011472_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011483_4011846_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011928_4012612_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012667_4012976_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4012994_4013309_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013305_4015780_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015787_4017179_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017175_4017361_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017339_4018041_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018037_4018859_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018839_4019964_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019956_4020976_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021181_4022072_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022316_4023108_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023190_4023565_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023542_4024952_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024944_4026327_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026661_4028266_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028343_4029315_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029325_4030252_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030642_4031593_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031762_4032989_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033188_4034055_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034047_4035010_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035110_4036061_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036159_4037110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037208_4038159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038155_4039649_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039645_4042753_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042749_4045818_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045814_4047065_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047245_4047998_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048039_4048684_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048692_4049673_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049772_4050516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050598_4050946_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051043_4051886_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051930_4052818_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052844_4053033_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053130_4054588_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054574_4056101_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056119_4056587_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056586_4057609_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057729_4058470_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058524_4059625_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059626_4060817_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060936_4061953_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062271_4062943_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062939_4063848_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064059_4064707_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068567_4069635_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069645_4070455_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4070544_4071318_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_077074156.1|4071500_4072451_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
