The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	27282	70036	4106377	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	77634	136108	4106377	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	164891	225402	4106377	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164891_165842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167285_168188_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168165_168795_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169077_170508_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170541_171171_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171219_172827_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172851_173535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173616_174093_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174299_175250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176365_176893_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176984_177800_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177860_178595_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178632_180711_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180960_181233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181334_182420_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182423_184328_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184324_187999_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188059_188623_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188630_189053_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189080_189500_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189528_190002_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190101_190599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190753_193024_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193072_194305_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194403_195354_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195456_196092_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196088_196982_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197376_198477_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198558_198933_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198992_201857_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202001_202742_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202811_204023_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204051_205020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205633_206584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206740_207064_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207168_208209_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208214_208994_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209039_209336_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209361_209637_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209693_210338_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210337_211024_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211153_212005_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212055_212781_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212812_214162_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214273_215206_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215663_218459_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219052_221995_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222066_222786_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222824_223373_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223527_224427_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224451_225402_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	233334	286922	4106377	transposase,protease,tRNA	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233334_234285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234371_235322_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235318_236269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236367_237165_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238114_238525_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239546_240290_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240333_241377_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241547_243650_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245060_246017_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246035_246527_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246523_247879_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247879_248578_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248574_249276_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249528_250578_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250683_251625_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251621_253511_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253597_254236_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254378_255764_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255694_256231_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256382_257774_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257790_258771_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258906_259890_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259954_260854_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260960_262715_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262722_263847_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263860_264841_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265571_266522_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267081_267627_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267710_269330_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269345_270500_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270513_270639_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270635_272387_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272383_274063_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274125_274674_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275816_276095_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277138_278089_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_181902617.1|278106_278253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278366_278528_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278535_278676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279194_279644_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279653_280265_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280423_281278_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281297_282680_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282744_283386_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283525_283984_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284008_284785_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284838_285975_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285971_286922_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	390855	448364	4106377	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390855_391806_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391942_392860_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392856_393105_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393101_394307_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394379_395375_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395397_396618_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396614_397259_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398989_399799_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400103_401057_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401155_402139_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402065_402767_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402815_403586_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403582_404761_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404928_406635_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406631_407528_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407568_409158_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409207_410200_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410268_410868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411328_412309_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412384_413335_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413423_414338_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414334_414994_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415083_416007_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416012_416468_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416464_417568_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417526_417796_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417755_419375_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419371_420430_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420559_421054_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421146_422124_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422319_423525_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423521_425033_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425048_426362_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426552_426732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427141_427876_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430320_431271_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431402_431801_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432211_432682_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432770_433115_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433214_434615_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436403_436922_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437032_437788_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437983_439216_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439208_439994_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440060_441032_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441042_442020_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442145_443318_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443344_444373_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444438_445632_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447413_448364_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	589369	650559	4106377	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589369_590320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590816_591686_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591682_592504_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592702_593194_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593212_594286_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594332_595436_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595511_596132_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596152_596662_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596716_596968_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597031_598165_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598172_598559_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598555_601075_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601503_601842_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601838_602345_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602406_603207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603317_604259_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604352_605888_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607567_609418_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609421_610255_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610254_611196_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611447_612419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612560_614849_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615155_616064_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616118_617084_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617158_618820_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618891_619602_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619568_619733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619750_620701_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621399_621783_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621840_622443_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622460_622862_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622995_623889_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623885_624467_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625261_625996_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626036_627086_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627233_627812_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628198_629176_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629269_633664_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633864_634713_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634871_635684_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635739_636690_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636788_637589_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637650_638034_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638045_639479_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639685_640015_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640017_640767_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640949_641870_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641916_642129_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642151_642574_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642590_643691_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643787_645305_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645380_646220_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646241_647123_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647204_648299_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648592_649543_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649617_650559_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	655883	702074	4106377	transposase,tail,tRNA,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655883_656909_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656949_657189_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657258_658848_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658847_659396_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659476_660049_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660067_660979_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661052_662021_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662143_663217_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663221_665042_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665118_666069_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666157_666493_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666626_667277_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667298_668717_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668786_669542_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669510_670269_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670279_671161_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671177_671885_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671887_672646_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672855_674598_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674590_675115_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675154_675949_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676116_677190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677288_678239_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678490_678697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678768_679380_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679934_680186_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680178_680868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680885_681107_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681124_682075_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682714_683200_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683186_684464_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684466_685885_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685913_686969_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686974_687217_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687339_687942_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688370_689321_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689995_690247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690309_690792_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690793_690994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690993_691389_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691385_691784_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691780_692203_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692210_692711_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692965_693484_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693493_693823_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693840_694131_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694156_696769_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696778_697138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697205_697739_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697735_698125_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698117_702074_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	708240	762170	4106377	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708240_709971_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710023_710452_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710454_711135_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711134_711593_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711629_712604_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712620_713937_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713968_714466_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714552_715242_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715241_716291_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716287_717082_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717250_717601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717576_718134_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719263_720214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722351_723581_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723583_725026_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725130_726276_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726307_727105_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727129_728689_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728685_731058_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731167_732271_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732270_732963_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733106_733808_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733792_734170_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734901_735852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736011_736884_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737224_737443_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737482_738862_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738903_740301_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740340_741993_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741996_742881_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742880_743822_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743900_745520_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745686_746502_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746569_747139_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747139_748090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748744_749842_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749875_751141_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751298_752249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752492_753083_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753098_755543_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755662_756634_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756765_757290_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757249_758200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758421_760617_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760689_761118_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761219_762170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	853048	957539	4106377	transposase,holin	Bacillus_phage(20.0%)	87	NA	NA
WP_010929591.1|853048_853999_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854016_854571_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854572_855007_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855003_855438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855421_856225_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856241_857057_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857053_857869_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858015_858717_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858744_860703_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860785_861736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861956_862625_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862748_863855_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863867_866981_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866977_868471_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868485_869157_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869200_869695_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869835_870483_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870586_872635_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872631_874644_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874669_876004_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876112_877105_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877171_879256_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879280_880252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880380_881412_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|881415_882567_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882737_883661_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883738_884563_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884759_885776_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885972_886956_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888554_889943_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889973_890963_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891073_892306_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892587_893388_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893410_895642_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896429_896876_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896897_897644_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897787_898765_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899398_900010_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900003_901221_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901361_902312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|902410_903361_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903357_904077_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904197_906357_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906447_906717_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907010_907538_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907556_908336_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908503_909520_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909592_910084_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910094_911810_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912973_913924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913920_915753_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916151_916811_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916904_917051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917159_917327_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917338_918019_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918300_919017_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919031_920333_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922477_925366_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925589_926942_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003819989.1|927487_928942_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928976_929225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929330_930206_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930231_931287_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931299_932091_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932123_933494_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934670_935621_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935673_935895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936054_936267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936386_937505_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938010_938262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938374_939325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939321_939705_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939759_941574_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941723_942551_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942596_943577_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943573_943786_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943782_944964_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945127_945862_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945863_948476_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948611_950525_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951140_951551_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951648_952734_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952832_953783_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953779_954754_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954878_955790_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956066_956459_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956588_957539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	976961	1047228	4106377	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976961_977912_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977992_978904_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978964_980110_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980129_981044_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981115_981865_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981864_982794_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983037_984864_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984946_985588_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985810_986812_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988648_989713_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990510_991419_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992906_994181_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994334_994715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994722_995595_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995900_996281_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996491_997217_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997312_998263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998367_999417_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999554_1000571_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002079_1002652_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002711_1003443_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003494_1004412_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005219_1008399_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008395_1009778_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009847_1010099_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010244_1010859_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011045_1013160_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013235_1014087_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014083_1014710_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014706_1016461_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016753_1019459_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019471_1021133_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021145_1022936_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023157_1024333_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024375_1025326_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025424_1026165_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026359_1028396_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028413_1029424_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029541_1030735_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030764_1031538_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031534_1032725_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032750_1033689_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033685_1036034_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036188_1036830_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036933_1038067_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038159_1038312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038343_1038892_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038910_1039396_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039573_1040512_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040514_1040832_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040877_1041822_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043502_1044153_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044206_1044542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044538_1045399_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045415_1045697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045770_1046034_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046277_1047228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1059446	1117877	4106377	transposase,protease,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1059446_1060463_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061251_1062301_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062297_1063941_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063937_1064825_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064965_1065439_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065428_1066451_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066447_1067875_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068812_1069829_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070161_1071097_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071146_1073027_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073093_1073438_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073582_1074719_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074715_1075789_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075946_1077383_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077473_1078115_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078450_1079467_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081509_1082460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083662_1085084_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085347_1086064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086148_1086466_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086506_1086920_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086921_1087281_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087323_1088868_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088951_1089782_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089816_1090971_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091013_1091886_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092002_1094291_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095497_1095962_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095988_1096939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096956_1097094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097306_1098083_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098127_1098985_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099006_1100023_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100157_1101198_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101392_1103474_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103709_1105203_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105433_1106228_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106448_1107807_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107803_1108646_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108664_1110551_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110492_1110744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110788_1111421_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111439_1112042_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112193_1113144_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113724_1114432_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114790_1115777_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115916_1116930_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116926_1117877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1157576	1219747	4106377	transposase,tRNA	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1157576_1158527_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158625_1159249_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159422_1161705_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161859_1164556_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164681_1165170_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167580_1170451_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170496_1171711_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171940_1173368_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173465_1174557_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174569_1175328_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175415_1176318_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176314_1177265_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177394_1178378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178432_1179155_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180633_1181989_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182069_1184445_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184609_1186685_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186746_1187547_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187648_1188611_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188598_1189354_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189461_1191099_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191166_1191904_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192006_1192582_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192754_1193291_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193293_1193638_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193653_1194499_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194537_1195917_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195994_1196876_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196974_1197925_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197921_1198332_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198439_1199294_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199286_1200249_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200294_1201419_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201524_1202403_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202527_1203307_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203460_1204882_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205316_1207014_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207240_1208182_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208508_1209255_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209262_1210189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210310_1211228_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211267_1212221_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212245_1212824_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214497_1215106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215183_1215537_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215620_1216610_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1216606_1216795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216812_1217763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217849_1218800_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218796_1219747_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1270675	1327886	4106377	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270675_1271626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275372_1275984_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276206_1277667_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277763_1279356_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279709_1279967_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279968_1281309_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281404_1282094_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282106_1283537_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285261_1286083_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286093_1287665_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287693_1288671_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288697_1289501_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289497_1290292_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290299_1291535_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291527_1291962_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292711_1293662_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294283_1296011_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296122_1297481_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297537_1297756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297773_1298724_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298764_1299835_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299857_1300736_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300907_1301879_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302041_1302884_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303045_1303726_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303719_1304889_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304885_1305917_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305960_1307202_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307236_1308769_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308849_1309473_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309503_1310115_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310150_1310621_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311052_1312057_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312093_1313608_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313611_1314571_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314599_1315403_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315404_1317039_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317122_1318184_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318382_1318652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318655_1319180_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319595_1320546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320542_1321577_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321685_1322324_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322618_1322846_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322968_1323682_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323926_1324877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1324980_1325262_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325376_1326825_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326935_1327886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1418119	1470272	4106377	transposase,tRNA	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1418119_1419070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1419087_1419240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1419236_1419590_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419602_1419965_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420006_1420432_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420634_1421891_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422089_1423070_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423219_1424461_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424559_1425510_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425518_1426214_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429035_1429635_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429645_1431811_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431834_1433619_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433618_1433708_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434402_1434675_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434674_1436741_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436737_1437688_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437786_1438737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438852_1439185_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439181_1439868_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439854_1440814_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440855_1443216_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443215_1443848_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443949_1445290_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445336_1446692_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446817_1447462_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447406_1447724_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1447996_1448512_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448605_1448767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448782_1449538_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449876_1450083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450090_1450750_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451044_1453249_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453359_1454583_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454705_1455680_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455747_1456941_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456955_1457756_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457752_1459609_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459605_1460211_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460229_1461615_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462340_1463567_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463655_1464438_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464536_1465487_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465513_1466287_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466298_1467540_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469321_1470272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1514197	1582282	4106377	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1514197_1514686_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514803_1515382_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515487_1515856_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515954_1516905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516911_1518024_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518710_1519913_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519948_1520095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520116_1522777_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522789_1526194_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526861_1529087_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529133_1529460_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529510_1530119_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530217_1531168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531237_1532002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1531998_1532598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532701_1533553_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533612_1534239_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534235_1535186_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535284_1536397_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536386_1537388_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537493_1539005_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539001_1540306_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540417_1540978_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541245_1541800_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542255_1542471_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542725_1545323_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545319_1546507_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547164_1547779_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547867_1548995_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549006_1549912_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550804_1551755_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551936_1552689_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552757_1553417_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553413_1554142_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554154_1556434_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556458_1556662_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556703_1557336_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557471_1558389_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558385_1559099_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559336_1560107_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560111_1560711_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560955_1562446_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562504_1562789_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562926_1563082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563354_1564281_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564417_1565158_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565324_1566701_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566882_1567788_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569439_1571242_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571368_1572010_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572108_1573059_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573080_1574301_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574486_1575899_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575962_1577030_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577029_1578517_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578526_1579471_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579630_1580329_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580406_1581312_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581331_1582282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1618231	1673822	4106377	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618231_1619182_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619240_1620014_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620006_1621563_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621559_1622510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623836_1624439_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624678_1625380_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625373_1626156_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626340_1627291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627389_1628127_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628316_1629075_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629121_1630111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630288_1631257_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632796_1633765_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633773_1634715_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635188_1636199_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636189_1637704_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637700_1639047_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639049_1640084_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640133_1641759_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642311_1643262_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643366_1644314_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644367_1646182_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646174_1646849_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1646978_1650053_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650066_1650366_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650680_1651304_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651547_1652417_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652394_1653339_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653424_1654351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654463_1655243_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655233_1656430_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656460_1657411_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657632_1658322_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658386_1659142_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659193_1660186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660195_1661149_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661264_1662227_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663628_1664057_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664053_1665004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665297_1666035_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666458_1667646_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667649_1668030_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669749_1670721_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670734_1671448_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671452_1672370_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672476_1672773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672871_1673822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1831589	1890859	4106377	transposase,protease,tRNA	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831589_1832540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832664_1833474_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1833674_1834625_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835898_1837116_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838172_1839075_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839151_1840024_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840154_1840523_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840580_1841627_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841822_1843079_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843083_1844421_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844570_1845527_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845629_1846562_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846677_1846998_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1846990_1847350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847397_1848972_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849024_1849969_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1849986_1850817_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850809_1852444_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852440_1853796_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854702_1856280_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856283_1857558_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857655_1858030_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859745_1860879_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860916_1861522_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861518_1862337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862408_1865033_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865019_1865274_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865340_1865922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866225_1866486_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866651_1867275_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867274_1868048_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868044_1869253_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869278_1869752_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869825_1870776_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870874_1871825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871923_1873273_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874038_1874794_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874886_1877769_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878091_1878517_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878544_1879693_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879689_1880196_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880202_1881498_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881556_1882843_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882844_1883483_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883485_1884646_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884672_1886028_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886031_1887102_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887240_1887477_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887564_1888671_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888636_1889941_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889959_1890859_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1901099	1945422	4106377	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1901099_1902050_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902148_1903099_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903298_1904384_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904399_1905161_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1905157_1906117_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1906179_1906680_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906712_1907456_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907551_1907791_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907804_1907957_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908042_1909533_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909624_1910563_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910559_1910736_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910738_1911401_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913022_1913166_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913162_1914137_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1914031_1914286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1914303_1915254_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915250_1916525_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916628_1917822_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917818_1918472_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918468_1919905_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919892_1920252_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921066_1921207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921224_1922175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923220_1925086_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925343_1926864_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926951_1927602_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1928550_1929846_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929867_1930752_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930850_1931726_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931715_1932072_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932202_1933177_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933306_1933486_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933583_1934108_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934118_1934955_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935067_1935439_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935435_1935987_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936002_1937694_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937742_1938423_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938670_1939135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939304_1940234_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940246_1940894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940967_1942785_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942868_1943819_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944471_1945422_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	1975195	2039564	4106377	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975195_1976146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976367_1977318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977416_1978382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978519_1979419_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982013_1983501_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983511_1984708_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984780_1986100_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986096_1986972_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987002_1988151_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988168_1988483_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988504_1989227_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989226_1990045_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990049_1990577_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990582_1991839_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992197_1993337_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993414_1994287_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995157_1996108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996067_1996703_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997062_1998385_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998703_1999525_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000949_2001522_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001561_2003391_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003353_2004412_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004449_2004911_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2004995_2005742_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007232_2010463_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010529_2011861_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012113_2012488_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012590_2013769_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013779_2014370_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014480_2015287_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015312_2016107_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017107_2018082_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018240_2018753_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018909_2019881_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021625_2022432_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2022428_2023730_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2023680_2024445_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024558_2025329_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025413_2026601_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026673_2027048_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2027148_2028411_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028407_2029265_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029437_2030439_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030890_2031841_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033356_2034556_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034924_2035161_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035224_2035392_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2035505_2037311_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2037564_2038515_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038613_2039564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	2171093	2228372	4106377	transposase,tRNA	Synechococcus_phage(14.29%)	49	NA	NA
WP_005012067.1|2171093_2172044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172142_2174137_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174196_2175162_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175151_2178013_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178015_2178522_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178626_2179835_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179836_2180775_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180936_2181410_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181406_2182357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182467_2182908_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183036_2184266_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184304_2185126_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185179_2186331_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186422_2186911_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189461_2192011_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192081_2194655_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194920_2195121_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195152_2195314_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195371_2195710_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195858_2196809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197583_2198252_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198233_2200249_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2200431_2201181_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201193_2202057_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202060_2203476_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203609_2204338_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204476_2204677_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204852_2205251_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205274_2206675_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206793_2207546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2207834_2208434_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208538_2209318_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209314_2210199_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210216_2210996_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2210980_2211739_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211864_2212512_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212779_2213796_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213893_2214934_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215068_2216361_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217720_2218104_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218121_2218709_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_010930048.1|2218746_2219697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930801.1|2219795_2220356_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930802.1|2220352_2220898_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003818661.1|2221093_2222122_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930803.1|2222162_2223503_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818658.1|2223611_2224616_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930804.1|2224722_2227323_+	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_010930522.1|2227421_2228372_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	2474954	2533198	4106377	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2474954_2475905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2476384_2477041_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2477055_2478723_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2478725_2479355_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2479566_2480661_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2480805_2481618_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2481621_2483325_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2483375_2484506_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2484692_2485769_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2485850_2486501_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2486515_2487919_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2488202_2489021_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2489017_2489722_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2490621_2491737_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2491770_2492145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2492167_2493325_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2493337_2493571_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2494205_2497175_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2497189_2497399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2497550_2498180_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2498176_2500267_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2500290_2500971_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2500967_2501528_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2501534_2502632_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2502784_2503378_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2503374_2504667_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2504680_2505223_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2505232_2506069_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2506102_2507164_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2507205_2508258_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2508273_2508576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2508717_2509668_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2509685_2509850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2509846_2511541_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2511537_2512623_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2512670_2513570_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2513580_2514225_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2515246_2518489_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2518499_2519654_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2519880_2520843_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2520941_2521892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2521990_2522941_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2522950_2523640_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2523699_2524137_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2524182_2525076_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2525123_2526296_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2526292_2527447_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2527643_2527994_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2527983_2528418_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2528434_2529385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2529532_2530000_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2529980_2531138_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2531203_2532130_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2532247_2533198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	2575475	2641975	4106377	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2575475_2576426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2576795_2577368_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2577370_2578381_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2578373_2578874_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2578884_2579226_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2579237_2580029_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2580045_2580315_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2580337_2581126_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2581172_2582189_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2582405_2583848_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2584026_2585646_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2585766_2587587_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2587665_2589198_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2589231_2590878_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2590947_2591970_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2591987_2593121_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2593123_2593813_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2593812_2594598_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2594641_2595406_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2595444_2596866_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2596931_2597636_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2597683_2598103_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2598115_2598523_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2598706_2599417_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2599543_2599834_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2599851_2600334_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2604839_2605994_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2606299_2607316_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2607562_2608351_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2608417_2609098_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2609094_2609865_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2609963_2610914_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2610969_2611887_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2611897_2613076_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2613095_2614091_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2615679_2616288_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2616275_2617316_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2617333_2618296_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2618292_2619486_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2619482_2620280_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2620305_2621292_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2621310_2623350_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2623551_2624232_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2624245_2625157_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2625153_2625732_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2625870_2626776_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2626783_2630203_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2630190_2632791_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2633746_2634379_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2634772_2635531_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2635527_2636730_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2636917_2637868_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2638775_2639921_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2639907_2640663_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2640779_2640959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2641024_2641975_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	2670090	2707502	4106377	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2670090_2671041_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2671139_2672090_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2672182_2672722_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2672828_2673173_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2673230_2674679_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2674866_2675202_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2676829_2678008_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2678090_2678591_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2678700_2679402_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2679413_2679878_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2679892_2680168_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2680164_2680941_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2680969_2681797_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2681922_2682393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2682519_2683413_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2683460_2684642_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2684654_2685470_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2685603_2686131_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2686127_2686625_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2686772_2687150_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2687371_2688322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2688420_2689032_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2689266_2690394_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2690504_2691593_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2691645_2692497_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2692516_2693398_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2693574_2694888_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2695098_2695932_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2695928_2696510_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2696863_2697814_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2697829_2698945_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2699047_2699974_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2699973_2701212_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2701208_2701976_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2701976_2702678_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2702759_2703206_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2704095_2704734_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2705502_2706453_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2706551_2707502_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	2806629	2861146	4106377	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_076879566.1|2806629_2807580_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2807908_2808514_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2808567_2809881_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2809955_2810426_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2810425_2811214_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2811224_2812877_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2812964_2813915_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815076_2815583_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815579_2816344_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816359_2816644_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816708_2817698_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817869_2818799_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818770_2819457_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819490_2820036_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820080_2821346_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821342_2822245_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823426_2824371_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824465_2825983_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826024_2827653_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827760_2828642_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831754_2832129_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832153_2832492_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832535_2834170_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834208_2835555_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835662_2837084_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837153_2837738_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837840_2838791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838925_2840032_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840042_2841140_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841284_2842490_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842496_2843018_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843014_2843506_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843502_2843754_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843734_2844220_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844355_2847817_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847834_2848719_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848728_2849160_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849406_2849910_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2849987_2851388_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851462_2852338_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852334_2853342_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853809_2854115_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854205_2854796_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2854986_2856003_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856194_2858531_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858613_2859048_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859146_2860097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860195_2861146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	2869171	2925957	4106377	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2869171_2870122_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2871828_2872095_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2872802_2873141_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2877694_2878297_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2878393_2879683_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2879740_2880472_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2880468_2881272_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2881268_2882357_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2882353_2883283_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2883431_2884577_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2884598_2885549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885566_2885725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885879_2889701_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889857_2890526_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890530_2892204_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892222_2893542_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893546_2895862_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895917_2898086_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898082_2903272_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903361_2903676_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903903_2904149_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904243_2904762_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904861_2906067_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906182_2907580_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907696_2908275_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908347_2909739_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909906_2910857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911137_2911758_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911754_2912168_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912164_2913208_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913263_2913452_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913461_2914226_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914316_2914973_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915064_2915823_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915848_2917450_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917650_2918655_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918755_2919019_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919136_2919913_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920503_2921454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923837_2924950_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925006_2925957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	2956343	3000034	4106377	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2956343_2957294_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957311_2957461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957414_2958311_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960588_2962814_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2962978_2964067_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964023_2964677_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964724_2965522_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966053_2967004_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967078_2968233_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968289_2969240_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969338_2969644_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969672_2970107_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970108_2971353_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971349_2972060_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972074_2972986_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2973348_2973753_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2973749_2974208_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2974214_2975123_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2975119_2975986_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2975972_2976800_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2976810_2977938_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2979015_2980254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2980295_2981558_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2981564_2982317_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2982368_2982554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2982829_2983294_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2983325_2983985_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2984129_2986238_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2986234_2987185_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2987288_2987909_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2988000_2988753_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2989887_2991012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2991057_2991426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2991667_2992618_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2993653_2994196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2994393_2994564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994581_2995532_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2995528_2996494_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2996563_2997400_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2997912_2999022_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2999083_3000034_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	3122617	3186452	4106377	transposase,protease,tRNA	Pseudomonas_phage(30.0%)	57	NA	NA
WP_005015810.1|3122617_3123568_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3123713_3124838_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3125043_3125607_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3126601_3127084_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3127241_3128489_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3128709_3129366_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3129401_3130631_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_158516320.1|3130725_3130881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3130898_3131849_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3131940_3133356_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3133361_3134498_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3134567_3134939_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3135026_3135773_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3135809_3136874_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3137062_3137455_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3137464_3137893_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3138188_3139286_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3139627_3140992_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3141050_3141602_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3141615_3142290_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3143546_3144356_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3144358_3145195_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3145209_3145902_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3145913_3146303_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3146408_3147797_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3147913_3149410_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3149706_3150381_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3150479_3151430_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3151528_3152479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3152475_3154935_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003814917.1|3155031_3156477_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3156480_3157668_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3157736_3158246_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3158447_3158900_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_192855352.1|3158872_3159439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247415.1|3159461_3162524_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3162829_3165757_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3165778_3166975_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3167292_3167820_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_010931237.1|3167958_3168534_+	YggT family protein	NA	NA	NA	NA	NA
WP_010931238.1|3168541_3170005_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3170015_3171143_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_003814941.1|3171272_3172400_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3172425_3172665_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3172945_3173449_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3173621_3174563_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3174574_3175672_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3176637_3177984_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3177993_3178443_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3178532_3178967_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3179045_3179594_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3179676_3181047_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3181057_3181651_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3181722_3183606_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3183643_3184543_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3184539_3185403_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|3185501_3186452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	3234596	3248784	4106377	transposase,protease	Erwinia_phage(100.0%)	15	NA	NA
WP_005012808.1|3234596_3235547_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3235991_3236303_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3236302_3236833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_127013038.1|3236789_3236978_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3236995_3237946_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3238235_3238700_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3238714_3240220_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3240476_3242081_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3242136_3243042_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3243482_3244433_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3244531_3245482_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245563_3246145_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246569_3246875_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246888_3248223_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3248244_3248784_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 29
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	3267207	3331498	4106377	transposase,tRNA,holin,integrase,protease	Tupanvirus(12.5%)	49	3260601:3260619	3333359:3333377
3260601:3260619	attL	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
WP_010931277.1|3267207_3267543_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267542_3268385_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3268483_3269434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269498_3270470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270533_3271553_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271554_3272928_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3273205_3273886_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3273898_3276025_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3276021_3277116_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3277130_3278390_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3278409_3280134_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3280372_3281125_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3281263_3282214_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282526_3284005_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3284011_3285121_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3285132_3285813_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285834_3286590_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286725_3287610_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287697_3288279_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288539_3288839_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3288990_3289470_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3290189_3291626_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291622_3292126_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3292141_3293092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3293619_3294393_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3294525_3295536_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3295687_3297343_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3297397_3297739_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3297752_3299192_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3299324_3300140_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3300103_3300316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3300333_3301284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302671_3303619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303845_3304586_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3304671_3305622_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3305639_3305795_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3307063_3308635_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308967_3310821_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3310865_3313430_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313848_3314799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3317664_3318159_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3318175_3319126_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931301.1|3319309_3320521_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3320536_3323488_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931303.1|3323489_3326609_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3326756_3327803_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3328144_3329272_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3329551_3330643_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3330715_3331498_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
3333359:3333377	attR	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
>prophage 30
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	3381029	3434770	4106377	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381029_3381980_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382384_3383029_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383053_3383638_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383738_3384356_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384358_3386074_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386070_3386379_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386395_3387013_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387057_3387360_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387460_3388315_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388502_3388727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388896_3389169_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389586_3389994_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390363_3391158_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391258_3392494_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392562_3393579_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393590_3394967_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394963_3396160_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396156_3397695_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397691_3398951_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400891_3401842_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402608_3403703_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403695_3405030_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3404983_3405667_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3405692_3406856_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406852_3407854_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407853_3408726_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408722_3409472_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409468_3410260_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410256_3411396_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411671_3412457_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412490_3413273_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413276_3413666_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414805_3415669_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415704_3416793_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416789_3417740_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418093_3421072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3421998_3422877_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424825_3425776_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425772_3426240_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426282_3427053_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427073_3427874_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427884_3429294_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429388_3430174_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430413_3431430_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431537_3431930_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432067_3432748_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432752_3433724_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433819_3434770_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	3440925	3500223	4106377	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440925_3442689_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442800_3443679_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443791_3444607_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444610_3444862_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444946_3445963_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446293_3446515_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448875_3449793_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450290_3451499_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451578_3453150_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453267_3454203_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454391_3455336_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455903_3461621_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461626_3462754_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462809_3463436_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463707_3464724_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464819_3465530_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465526_3466516_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466611_3468243_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468245_3468983_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469138_3470011_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470279_3471500_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471496_3472156_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472227_3472860_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472889_3473408_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473418_3474528_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474574_3475429_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475430_3476333_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477555_3478506_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480260_3481250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481246_3481405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481425_3482214_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482210_3483242_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483260_3483824_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483879_3485400_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485663_3486368_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486375_3487113_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487218_3487593_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487635_3488925_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488921_3490091_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490087_3490927_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3490986_3491922_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010929591.1|3491934_3492885_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3492983_3493946_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493977_3494337_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494461_3495364_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495365_3497138_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497172_3497949_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499272_3500223_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	3515161	3573234	4106377	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515161_3516112_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516240_3517374_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517417_3518323_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518325_3520026_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520022_3520943_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520950_3521928_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3521986_3523021_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3524995_3525232_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3525358_3526222_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526310_3527132_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527211_3527949_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527945_3528938_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529051_3529714_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529758_3530907_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533230_3534181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534521_3535472_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535570_3536521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536817_3537315_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537357_3539133_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539140_3540007_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540013_3540748_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541917_3542712_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543001_3543592_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543625_3544954_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545028_3546174_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546285_3547284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547246_3547681_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549197_3550082_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550078_3551284_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551280_3552141_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552253_3554044_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554084_3554750_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554750_3555059_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555224_3556511_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557944_3558895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560846_3562061_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562166_3563156_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563152_3563761_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563773_3564403_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564399_3565020_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565051_3565843_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566694_3567150_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567168_3568095_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568148_3569435_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570365_3571238_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571234_3572185_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572283_3573234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP012088	Bordetella pertussis strain J107 chromosome, complete genome	4106377	4028548	4081980	4106377	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4028548_4029499_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029668_4030895_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031094_4031961_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031953_4032916_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033016_4033967_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034065_4035016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035114_4036065_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036061_4037555_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037551_4040659_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040655_4043724_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043720_4044971_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045151_4045913_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045945_4046596_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046598_4047438_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047678_4048422_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048504_4048852_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048949_4049792_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049836_4050724_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050750_4050939_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051036_4052494_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052480_4054007_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054025_4054493_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054492_4055515_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055635_4056355_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056430_4057531_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057532_4058723_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058842_4059859_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060177_4060849_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060845_4061754_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061965_4062613_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066464_4067541_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067551_4068361_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068450_4069224_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4069224_4069389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4069406_4070357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070245_4071268_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071257_4072412_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072451_4073864_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073988_4074855_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074856_4075681_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075677_4076439_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076519_4077206_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077379_4078387_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078383_4079163_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079220_4080483_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081029_4081980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
