The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	27282	70036	4107480	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	77634	136108	4107480	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	164892	225415	4107480	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_005012067.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_023999174.1|184325_188012_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188072_188636_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188643_189066_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189093_189513_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189541_190015_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190114_190612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190766_193037_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193085_194318_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194416_195367_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195469_196105_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196101_196995_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197389_198490_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198571_198946_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|199005_201870_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202014_202755_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202824_204036_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204064_205033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205646_206597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206753_207077_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207181_208222_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208227_209007_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209052_209349_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209374_209650_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209706_210351_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210350_211037_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211166_212018_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212068_212794_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212825_214175_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214286_215219_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215676_218472_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219065_222008_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222079_222799_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222837_223386_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223540_224440_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224464_225415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	233347	286935	4107480	tRNA,protease,transposase	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233347_234298_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234384_235335_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235331_236282_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236380_237178_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238127_238538_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239559_240303_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240346_241390_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241560_243663_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245073_246030_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246048_246540_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246536_247892_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247892_248591_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248587_249289_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249541_250591_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250696_251638_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251634_253524_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253610_254249_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254391_255777_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255707_256244_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256395_257787_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257803_258784_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258919_259903_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259967_260867_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260973_262728_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262735_263860_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263873_264854_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265584_266535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267094_267640_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267723_269343_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269358_270513_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270526_270652_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270648_272400_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272396_274076_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274138_274687_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275829_276108_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277151_278102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278119_278266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278379_278541_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278548_278689_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279207_279657_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279666_280278_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280436_281291_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281310_282693_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282757_283399_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283538_283997_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284021_284798_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284851_285988_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285984_286935_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	390865	448374	4107480	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390865_391816_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391952_392870_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392866_393115_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393111_394317_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394389_395385_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395407_396628_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396624_397269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398999_399809_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400113_401067_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401165_402149_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402075_402777_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402825_403596_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403592_404771_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404938_406645_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406641_407538_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407578_409168_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409217_410210_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410278_410878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411338_412319_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412394_413345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413433_414348_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414344_415004_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415093_416017_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416022_416478_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416474_417578_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417536_417806_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417765_419385_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419381_420440_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420569_421064_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421156_422134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422329_423535_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423531_425043_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425058_426372_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426562_426742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427151_427886_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430330_431281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431412_431811_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432221_432692_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432780_433125_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433224_434625_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436413_436932_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437042_437798_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437993_439226_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439218_440004_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440070_441042_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441052_442030_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442155_443328_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443354_444383_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444448_445642_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447423_448374_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	589379	650569	4107480	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589379_590330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590826_591696_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591692_592514_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592712_593204_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593222_594296_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594342_595446_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595521_596142_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596162_596672_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596726_596978_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597041_598175_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598182_598569_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598565_601085_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601513_601852_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601848_602355_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602416_603217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603327_604269_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604362_605898_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607577_609428_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609431_610265_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610264_611206_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611457_612429_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612570_614859_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615165_616074_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616128_617094_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|617168_618830_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618901_619612_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619578_619743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619760_620711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621409_621793_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621850_622453_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622470_622872_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|623005_623899_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623895_624477_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625271_626006_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626046_627096_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627243_627822_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628208_629186_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629279_633674_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633874_634723_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634881_635694_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635749_636700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636798_637599_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637660_638044_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638055_639489_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639695_640025_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640027_640777_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640959_641880_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641926_642139_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642161_642584_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642600_643701_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643797_645315_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645390_646230_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646251_647133_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647214_648309_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648602_649553_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649627_650569_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	655893	702084	4107480	tRNA,tail,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655893_656919_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656959_657199_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657268_658858_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658857_659406_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659486_660059_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660077_660989_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661062_662031_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662153_663227_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663231_665052_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665128_666079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666167_666503_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666636_667287_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667308_668727_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668796_669552_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669520_670279_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670289_671171_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671187_671895_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671897_672656_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672865_674608_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674600_675125_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675164_675959_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676126_677200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677298_678249_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678500_678707_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678778_679390_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679944_680196_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680188_680878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680895_681117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681134_682085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682724_683210_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683196_684474_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684476_685895_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685923_686979_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686984_687227_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687349_687952_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688380_689331_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|690005_690257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690319_690802_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690803_691004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|691003_691399_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691395_691794_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691790_692213_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692220_692721_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692975_693494_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693503_693833_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693850_694141_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694166_696779_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696788_697148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697215_697749_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697745_698135_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698127_702084_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	708250	762180	4107480	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708250_709981_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710033_710462_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710464_711145_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711144_711603_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711639_712614_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712630_713947_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713978_714476_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714562_715252_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715251_716301_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716297_717092_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717260_717611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717586_718144_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719273_720224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722361_723591_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723593_725036_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725140_726286_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726317_727115_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727139_728699_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728695_731068_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731177_732281_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732280_732973_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733116_733818_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733802_734180_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734911_735862_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736021_736894_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737234_737453_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737492_738872_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738913_740311_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740350_742003_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|742006_742891_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742890_743832_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743910_745530_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745696_746512_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746579_747149_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747149_748100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748754_749852_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749885_751151_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751308_752259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752502_753093_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753108_755553_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755672_756644_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756775_757300_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757259_758210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758431_760627_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760699_761128_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|761229_762180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	814822	863844	4107480	holin,transposase	Acinetobacter_phage(25.0%)	44	NA	NA
WP_005013747.1|814822_815773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|815871_816822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|816920_817577_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|817724_820433_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|820442_821462_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|821458_822409_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|822507_822996_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|822992_823676_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|823705_827161_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|827196_828057_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|828185_829103_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|829240_830221_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|830280_832071_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|832067_832844_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|832853_833372_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|833484_835755_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|835966_838198_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|838498_838828_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|838844_840329_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|840339_841842_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|841838_843851_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|843868_844177_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|844173_844821_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|844838_845327_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|845348_846422_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|846421_848749_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|848764_850132_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|850128_850623_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|850668_851925_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|851927_852551_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|852625_853102_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|853138_853498_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|853686_854844_-	porin	NA	NA	NA	NA	NA
WP_023998171.1|854944_855139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|855156_856107_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856124_856679_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856680_857115_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857111_857546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857529_858333_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858349_859165_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859161_859977_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860123_860825_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860852_862811_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862893_863844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	886867	1002680	4107480	holin,transposase	Bacillus_phage(12.5%)	98	NA	NA
WP_023994644.1|886867_887884_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888080_889064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890662_892051_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892081_893071_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893181_894414_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894695_895496_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895518_897750_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898537_898984_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|899005_899752_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899895_900873_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901506_902118_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902111_903329_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903469_904420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904416_905136_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905256_907416_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907506_907776_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|908069_908597_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908615_909395_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909562_910579_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910651_911143_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911153_912869_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914032_914983_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|915081_916032_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|916028_917861_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|918259_918919_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|919012_919159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|919267_919435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|919446_920127_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|920408_921125_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|921139_922441_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|924585_927474_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|927697_929050_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|929078_929600_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|929596_931051_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|931085_931334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|931439_932315_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|932340_933396_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|933408_934200_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|934232_935603_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010929591.1|936779_937730_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|937782_938004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|938163_938376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|938495_939614_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|940119_940371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|940483_941434_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|941430_941814_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|941868_943683_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|943832_944660_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|944705_945686_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|945682_945895_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|945891_947073_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|947236_947971_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|947972_950585_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|950720_952634_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|953249_953660_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|953757_954843_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|954941_955892_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|955888_956863_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|956987_957899_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|958175_958568_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|958697_959648_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|959677_959860_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|960632_961814_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|962029_962707_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|962703_963429_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|963554_964136_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|964506_967188_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|967187_968321_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|968313_969399_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|969485_970385_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|970381_971710_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|971724_972396_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|972583_974299_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|974300_974660_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|974851_975166_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|975208_976429_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|976425_977367_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|977363_978353_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|978387_978972_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|979070_980021_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|980101_981013_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|981073_982219_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|982238_983153_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|983224_983974_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|983973_984903_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|985146_986973_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|987055_987697_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|987919_988921_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|990757_991822_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|992619_993528_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|995015_996290_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|996443_996824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|996831_997704_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|998009_998390_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|998600_999326_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|999421_1000372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|1000476_1001526_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|1001663_1002680_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	1026484	1137767	4107480	tRNA,holin,protease,transposase	uncultured_Mediterranean_phage(17.65%)	99	NA	NA
WP_010929584.1|1026484_1027435_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1027533_1028274_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1028468_1030505_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1030522_1031533_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1031650_1032844_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1032873_1033647_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1033643_1034834_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1034859_1035798_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1035794_1038143_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1038297_1038939_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1039042_1040176_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1040268_1040421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1040452_1041001_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1041019_1041505_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1041682_1042621_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1042623_1042941_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1042986_1043931_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1045611_1046262_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1046315_1046651_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1046647_1047508_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1047524_1047806_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1047879_1048143_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1048386_1049337_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1049635_1050373_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1050808_1051132_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1051166_1051727_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1051847_1052723_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1052735_1053683_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1053784_1054078_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1054104_1056162_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1056176_1056677_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1056750_1058457_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1059320_1060373_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1060425_1060815_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1060823_1061456_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1061555_1062572_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_193410275.1|1063360_1064410_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1064406_1066050_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1066046_1066934_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1067074_1067548_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1067537_1068560_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1068556_1069984_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1070921_1071938_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1072270_1073206_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1073255_1075136_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1075202_1075547_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1075691_1076828_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1076824_1077898_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1078055_1079492_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1079582_1080224_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1080559_1081576_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1083516_1084467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1085771_1087193_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1087456_1088173_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1088257_1088575_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1088615_1089029_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1089030_1089390_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1089432_1090977_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1091060_1091891_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1091925_1093080_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1093122_1093995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1094111_1096400_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1097606_1098071_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1098097_1099048_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1099065_1099203_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1099415_1100192_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1100236_1101094_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1101115_1102132_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1102266_1103307_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1103501_1105583_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1105818_1107312_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_077069233.1|1107542_1108337_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1108557_1109916_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1109912_1110755_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1110773_1112660_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1112601_1112853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1112897_1113530_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1113548_1114151_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1114302_1115253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1115833_1116541_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1116899_1117886_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1118025_1119039_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1119035_1119986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1120003_1120144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1120098_1120557_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1120593_1121907_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1121924_1122296_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1122292_1123756_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1123896_1124625_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1124606_1127456_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1127668_1128619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1128786_1129611_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1129610_1130489_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1131393_1132509_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1132537_1133332_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1133328_1135194_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1135272_1135905_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1135901_1136204_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1136246_1137767_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	1320056	1388543	4107480	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1320056_1321007_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1321775_1322414_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1323303_1323750_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1323831_1324533_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1324533_1325301_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1325297_1326536_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1326535_1327462_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1327564_1328680_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1328695_1329646_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1329999_1330581_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1330577_1331411_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1331621_1332935_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1333111_1333993_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1334012_1334864_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1334916_1336005_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1336115_1337243_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1337477_1338089_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1338187_1339138_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1339359_1339737_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1339884_1340382_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1340378_1340906_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1341039_1341855_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1341867_1343049_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1343096_1343990_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1344116_1344587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1344712_1345540_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1345568_1346345_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1346341_1346617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1346631_1347096_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1347107_1347809_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1347918_1348419_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1348501_1349680_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1351307_1351643_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1351830_1353279_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1353336_1353681_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1353787_1354327_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1354419_1355370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1355387_1355627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1356108_1356540_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1356721_1357126_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1358362_1358686_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1358688_1359576_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1359608_1360034_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1360105_1360459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1360698_1361205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1361243_1362575_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1362634_1363450_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1363446_1364301_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1367363_1369907_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1371273_1373028_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1373024_1375145_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1375149_1377345_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1377341_1380683_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1383485_1384436_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1384501_1384681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1384797_1385553_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1385539_1386685_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1387592_1388543_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	1449034	1506482	4107480	protease,transposase	Mollivirus(16.67%)	58	NA	NA
WP_005012067.1|1449034_1449985_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1451186_1451633_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1451625_1453101_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1453097_1453853_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1453845_1454856_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1454845_1456522_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1456834_1457167_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1457180_1457576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1457585_1457912_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1457908_1458235_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1458161_1459184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1459180_1459531_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1459578_1460007_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1460014_1461388_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1461528_1461906_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1462168_1463476_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1463536_1464367_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1464363_1464852_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1464893_1466414_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1466457_1466934_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1467737_1470335_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1470364_1471186_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1471912_1472662_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1472845_1473724_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1473821_1474538_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1474552_1475113_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1475279_1476044_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1476063_1476921_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1476917_1478117_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1478156_1479491_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1479543_1481880_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1482005_1482569_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1482577_1483669_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1483740_1484196_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1484196_1484991_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1484987_1486169_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1486155_1486761_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1486757_1487531_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1487542_1488370_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1488531_1490895_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1490962_1491682_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1491805_1492231_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1492265_1493216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1493333_1494260_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1494325_1495483_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1495463_1495931_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1496078_1497029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1497045_1497480_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1497469_1497820_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1498016_1499171_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1499167_1500340_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1500387_1501281_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1501326_1501764_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1501823_1502513_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1502522_1503473_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1503576_1503858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1503972_1505421_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1505531_1506482_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	1890666	1938681	4107480	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1890666_1891617_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1891715_1894316_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1894422_1895427_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1895535_1896876_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1896916_1897945_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1898140_1898686_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1898682_1899243_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1899341_1900292_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1900329_1900917_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1900934_1901318_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1902677_1903970_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1904104_1905145_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1905242_1906259_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003811015.1|1906526_1907174_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1907299_1908058_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1908042_1908822_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_077069236.1|1908839_1909724_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1909720_1910500_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_010930528.1|1910604_1911204_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1911492_1912245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1912363_1913764_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1913787_1914186_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1914361_1914562_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1914700_1915429_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1915562_1916978_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1916981_1917845_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1917857_1918607_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_019247881.1|1918789_1920805_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247882.1|1920786_1921455_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1922229_1923180_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1923278_1924229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1924377_1924716_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1924773_1924935_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1924966_1925167_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1925432_1928006_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1928076_1930626_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1933176_1933665_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1933756_1934908_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1934961_1935783_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1935821_1937051_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1937179_1937620_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1937730_1938681_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2000243	2059513	4107480	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|2000243_2001194_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2001318_2002128_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2002328_2003279_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|2004552_2005770_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|2006826_2007729_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|2007805_2008678_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|2008808_2009177_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|2009234_2010281_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|2010476_2011733_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|2011737_2013075_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|2013224_2014181_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|2014283_2015216_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|2015331_2015652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|2015644_2016004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|2016051_2017626_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|2017678_2018623_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|2018640_2019471_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|2019463_2021098_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|2021094_2022450_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|2023356_2024934_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|2024937_2026212_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|2026309_2026684_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|2028399_2029533_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|2029570_2030176_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|2030172_2030991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|2031062_2033687_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|2033673_2033928_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|2033994_2034576_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|2034879_2035140_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|2035305_2035929_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|2035928_2036702_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|2036698_2037907_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|2037932_2038406_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|2038479_2039430_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|2039528_2040479_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|2040577_2041927_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|2042692_2043448_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|2043540_2046423_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|2046745_2047171_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|2047198_2048347_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|2048343_2048850_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|2048856_2050152_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|2050210_2051497_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|2051498_2052137_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|2052139_2053300_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|2053326_2054682_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|2054685_2055756_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|2055894_2056131_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|2056218_2057325_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|2057290_2058595_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|2058613_2059513_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 16
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2069753	2127250	4107480	transposase	Staphylococcus_phage(16.67%)	57	NA	NA
WP_005013747.1|2069753_2070704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|2070903_2071989_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|2072004_2072766_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|2072762_2073722_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|2073784_2074285_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|2074317_2075061_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|2075156_2075396_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|2075409_2075562_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|2075647_2077138_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|2077229_2078168_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|2078164_2078341_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|2078343_2079006_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|2080627_2080771_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|2080767_2081742_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|2081636_2081891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2081908_2082859_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|2082855_2084130_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|2084233_2085427_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|2085423_2086077_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|2086073_2087510_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|2087497_2087857_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|2088671_2088812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2088829_2089780_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2090825_2092691_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2092948_2094469_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2094556_2095207_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|2096155_2097451_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2097472_2098357_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2098455_2099331_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2099320_2099677_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2099807_2100782_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2100911_2101091_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2101188_2101713_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2101723_2102560_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2102672_2103044_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2103040_2103592_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2103607_2105299_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2105347_2106028_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2106275_2106740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2106909_2107839_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2107851_2108499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2108572_2110390_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2110473_2111424_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2112076_2113027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2113045_2113393_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2113421_2114861_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2114879_2115275_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2115449_2116058_+	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930753.1|2116070_2116889_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2116840_2117815_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2117843_2118905_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2118901_2121118_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2121131_2121590_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2121747_2122092_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2122248_2123154_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2123240_2124254_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930525.1|2126233_2127250_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2142800	2207169	4107480	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2142800_2143751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930800.1|2143972_2144923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2145021_2145987_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2146124_2147024_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2149618_2151106_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2151116_2152313_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2152385_2153705_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2153701_2154577_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2154607_2155756_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2155773_2156088_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2156109_2156832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2156831_2157650_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2157654_2158182_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2158187_2159444_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2159802_2160942_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2161019_2161892_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2162762_2163713_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2163672_2164308_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2164667_2165990_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2166308_2167130_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2168554_2169127_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2169166_2170996_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2170958_2172017_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2172054_2172516_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2172600_2173347_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2174837_2178068_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2178134_2179466_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2179718_2180093_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2180195_2181374_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2181384_2181975_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2182085_2182892_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2182917_2183712_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2184712_2185687_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2185845_2186358_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2186514_2187486_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2189230_2190037_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2190033_2191335_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2191285_2192050_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2192163_2192934_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2193018_2194206_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2194278_2194653_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2194753_2196016_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2196012_2196870_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2197042_2198044_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2198495_2199446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2200961_2202161_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2202529_2202766_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2202829_2202997_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2203110_2204916_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2205169_2206120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2206218_2207169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2393637	2454985	4107480	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2393637_2394588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2394704_2395424_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2395596_2396583_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2396583_2397066_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2397069_2398353_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2398349_2399288_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2399284_2400994_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2401003_2402251_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2403861_2405151_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_020699606.1|2406288_2407047_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_010930601.1|2407723_2408467_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2408541_2409282_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2409477_2410314_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2410364_2411135_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2411184_2412237_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2412233_2412860_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2412856_2413891_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2414069_2415086_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2415184_2416135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2418875_2420165_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2420283_2420721_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2420764_2421973_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2422119_2422584_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2422607_2423558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2424542_2425316_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2425312_2426311_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2426395_2427172_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2427327_2428932_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2429312_2430437_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2430563_2431187_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2431183_2433085_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2433133_2433928_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2433940_2434942_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_004568494.1|2434938_2435445_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.4	3.4e-07
WP_010930513.1|2435437_2436286_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2436383_2436926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2436969_2437920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2438075_2438402_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003810975.1|2438398_2438683_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2438679_2439159_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2439155_2440784_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2440780_2441125_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2441124_2444058_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2445216_2446167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2446265_2446562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2446668_2447586_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2447590_2448304_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2448317_2449289_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249653.1|2451008_2451389_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2451392_2452580_+	MFS transporter	NA	NA	NA	NA	NA
WP_170954298.1|2453003_2453741_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2454034_2454985_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2475776	2546930	4107480	transposase	Tetraselmis_virus(10.0%)	55	NA	NA
WP_005012067.1|2475776_2476727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2477279_2478905_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2478954_2479989_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2479991_2481338_-	BatD family protein	NA	NA	NA	NA	NA
WP_010930477.1|2481334_2482849_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2482839_2483850_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2484323_2485265_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2485273_2486242_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2487781_2488750_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2488927_2489917_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2489963_2490722_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2490911_2491649_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2491747_2492698_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2492882_2493665_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2493658_2494360_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2494599_2495202_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2496528_2497479_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2497475_2499032_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2499024_2499798_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2499856_2500807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2500888_2502064_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2502077_2504135_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2504131_2505157_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2505168_2506458_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2506480_2507578_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2507574_2508465_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2508461_2510546_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2510577_2511747_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2511788_2512529_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2512528_2513299_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247171.1|2513623_2513791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930465.1|2514154_2514940_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2514966_2517051_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2517218_2519174_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2519497_2519998_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2520096_2521623_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2521760_2522648_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2522662_2523616_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2523667_2525758_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2525773_2526160_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2528853_2529657_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2530950_2531853_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2531917_2532694_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2533015_2534065_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2534188_2535859_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2535863_2536658_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2536756_2537707_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2537726_2538632_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2538709_2539408_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2539567_2540512_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2540521_2542009_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2542008_2543076_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2543139_2544552_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2544737_2545958_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2545979_2546930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2642758	2701539	4107480	tRNA,transposase	Planktothrix_phage(28.57%)	50	NA	NA
WP_003812608.1|2642758_2644708_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2645095_2645872_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2645877_2646270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2646691_2647642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2647638_2648736_-	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2648767_2649718_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2651499_2652741_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2652752_2653526_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2653552_2654503_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2654982_2655639_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2655653_2657321_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2657323_2657953_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2658164_2659259_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2659403_2660216_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2660219_2661923_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2661973_2663104_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2663290_2664367_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2664448_2665099_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2665113_2666517_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2666800_2667619_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2667615_2668320_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2669219_2670335_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2670368_2670743_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2670765_2671923_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2671935_2672169_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2672803_2675773_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2675787_2675997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2676148_2676778_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2676774_2678865_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2678888_2679569_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2679565_2680126_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2680132_2681230_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2681382_2681976_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2681972_2683265_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2683278_2683821_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2683830_2684667_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2684700_2685762_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2685803_2686856_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2686871_2687174_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2687315_2688266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2688283_2688448_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2688444_2690139_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2690135_2691221_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2691268_2692168_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2692178_2692823_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2693844_2697087_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2697097_2698252_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2698478_2699441_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2699539_2700490_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2700588_2701539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2726741	2807616	4107480	tRNA,transposase	Bacillus_virus(25.0%)	59	NA	NA
WP_005013747.1|2726741_2727692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853289.1|2727709_2727928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931030.1|2727984_2729343_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931031.1|2729454_2731182_+	sulfate permease	NA	NA	NA	NA	NA
WP_005013747.1|2731803_2732754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2733503_2733938_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2733930_2735166_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2735173_2735968_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2735964_2736768_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2736794_2737772_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2737800_2739372_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2739382_2740204_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2741928_2743359_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2743371_2744061_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2744156_2745497_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2745498_2745756_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2746109_2747702_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2747798_2749259_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2749481_2750093_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2753839_2754790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2755205_2757842_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2757838_2758963_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2758959_2760342_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2760477_2760945_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931044.1|2761066_2761735_+	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_019249399.1|2761864_2763010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2763011_2764742_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2764859_2765168_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2765180_2765993_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2766873_2767962_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2769164_2769953_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2769992_2771597_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2771677_2772418_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2772425_2772920_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2773292_2774312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2774308_2775691_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2775723_2776584_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2777587_2778469_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2778527_2778965_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2779055_2780027_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2780065_2781010_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2781105_2781915_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2781991_2782366_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2782472_2783165_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2783157_2783574_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2783684_2784317_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2784345_2784789_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2784810_2785902_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2785956_2786757_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2786892_2787513_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2787652_2788126_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2789265_2790216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2790212_2797874_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2798114_2802161_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2802473_2803055_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2803051_2804350_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2804429_2805458_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2805718_2806669_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2806665_2807616_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2812988	2870146	4107480	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	50	NA	NA
WP_010929591.1|2812988_2813939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2815100_2815607_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2815603_2816368_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2816383_2816668_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2816732_2817722_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2817893_2818823_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2818794_2819481_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2819514_2820060_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2820104_2821370_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2821366_2822269_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2823450_2824395_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2824489_2826007_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2826048_2827677_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2827784_2828666_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2831778_2832153_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2832177_2832516_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2832559_2834194_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2834232_2835579_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2835686_2837108_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2837177_2837762_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2837864_2838815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2838949_2840056_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2840066_2841164_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2841308_2842514_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2842520_2843042_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2843038_2843530_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2843526_2843778_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2843758_2844244_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2844379_2847841_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2847858_2848743_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2848752_2849184_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2849430_2849934_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2850011_2851412_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2851486_2852362_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2852358_2853366_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2853833_2854139_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2854229_2854820_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2855010_2856027_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2856218_2858555_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2858637_2859072_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2859170_2860121_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2860219_2861170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2861166_2861961_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2861992_2862697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2862771_2863572_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2863568_2863976_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2863972_2864614_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2864606_2866607_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2867867_2869199_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2869195_2870146_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2884622	2925981	4107480	protease,transposase	uncultured_Mediterranean_phage(40.0%)	31	NA	NA
WP_010930800.1|2884622_2885573_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2885590_2885749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2885903_2889725_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2889881_2890550_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2890554_2892228_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2892246_2893566_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2893570_2895886_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2895941_2898110_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2898106_2903296_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2903385_2903700_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2903927_2904173_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2904267_2904786_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2904885_2906091_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2906206_2907604_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2907720_2908299_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2908371_2909763_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2909930_2910881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2911161_2911782_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2911778_2912192_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2912188_2913232_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2913287_2913476_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2913485_2914250_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2914340_2914997_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2915088_2915847_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2915872_2917474_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2917674_2918679_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2918779_2919043_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2919160_2919937_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2920527_2921478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2923861_2924974_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2925030_2925981_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	2956367	3012696	4107480	transposase	Planktothrix_phage(16.67%)	53	NA	NA
WP_005012067.1|2956367_2957318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2957335_2957485_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2957438_2958335_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2960612_2962838_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2963002_2964091_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2964047_2964701_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2964748_2965546_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2966077_2967028_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2967102_2968257_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2968313_2969264_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2969362_2969668_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2969696_2970131_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2970132_2971377_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2971373_2972084_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2972098_2973010_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_155120814.1|2973197_2973362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2973379_2974330_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931149.1|2974421_2974826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974822_2975281_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2975287_2976196_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2976192_2977059_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977045_2977873_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977883_2979011_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980088_2981327_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981368_2982631_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982637_2983390_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983441_2983627_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983902_2984367_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984398_2985058_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985202_2987311_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987307_2988258_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988361_2988982_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2989073_2989826_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990960_2992085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992130_2992499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992740_2993691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994726_2995269_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995466_2995637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2995654_2996605_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996601_2997567_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997636_2998473_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998985_3000095_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000156_3001107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3001299_3002082_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3002095_3002845_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3002872_3004219_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3004244_3005174_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3005289_3006195_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3006212_3007412_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3007484_3008177_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3008225_3010652_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_005013747.1|3010696_3011647_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853143.1|3011745_3012696_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	3186573	3248807	4107480	protease,transposase	Xanthomonas_phage(33.33%)	52	NA	NA
WP_005012067.1|3186573_3187524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3187532_3188081_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3188077_3188686_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3188868_3189339_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3189345_3190605_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3190657_3191470_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3191584_3192139_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_023998380.1|3192148_3193138_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3193317_3194037_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3194053_3196789_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3196968_3197955_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3198083_3198491_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3198602_3199526_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3199754_3200939_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3201127_3202354_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3202358_3203180_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3203192_3204143_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3204139_3205546_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3205542_3206616_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3206612_3207806_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3207802_3209335_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3209331_3210501_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3210490_3213328_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3213324_3215055_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3215051_3215330_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3215329_3216424_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3216432_3216861_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3217663_3219472_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3219511_3220591_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3220587_3221781_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3221930_3222209_+	SWIB/MDM2 domain-containing protein	NA	NA	NA	NA	NA
WP_003814593.1|3222538_3222931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3229655_3230132_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3230284_3231397_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3231464_3232025_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3232048_3232381_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3232364_3234053_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3234172_3234961_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3235668_3236619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3237063_3237375_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3237374_3237905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_162268687.1|3237861_3238050_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3238067_3239018_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3239307_3239772_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3239786_3241292_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3241548_3243153_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3243208_3244114_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3244554_3245505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3245586_3246168_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3246592_3246898_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3246911_3248246_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3248267_3248807_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 26
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	3267230	3314822	4107480	tRNA,holin,transposase	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3267230_3267566_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3267565_3268408_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3268506_3269457_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3269521_3270493_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3270556_3271576_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3271577_3272951_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3273228_3273909_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3273921_3276048_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3276044_3277139_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3277153_3278413_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3278432_3280157_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3280395_3281148_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3281286_3282237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3282549_3284028_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3284034_3285144_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3285155_3285836_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3285857_3286613_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3286748_3287633_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3287720_3288302_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3288562_3288862_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3289013_3289493_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3290212_3291649_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3291645_3292149_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3292164_3293115_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3293642_3294416_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3294548_3295559_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3295710_3297366_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3297420_3297762_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3297775_3299215_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3299347_3300163_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023994811.1|3300126_3300339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3300356_3301307_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3302694_3303642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3303868_3304609_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3304694_3305645_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162291319.1|3305662_3305818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905963.1|3307086_3308658_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3308990_3310844_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3310888_3313453_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3313871_3314822_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	3381052	3434793	4107480	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3381052_3382003_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382407_3383052_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383076_3383661_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383761_3384379_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384381_3386097_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386093_3386402_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386418_3387036_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387080_3387383_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387483_3388338_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388525_3388750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388919_3389192_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389609_3390017_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390386_3391181_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391281_3392517_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392585_3393602_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393613_3394990_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394986_3396183_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396179_3397718_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397714_3398974_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400914_3401865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402631_3403726_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403718_3405053_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405006_3405690_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405715_3406879_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406875_3407877_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407876_3408749_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408745_3409495_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409491_3410283_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410279_3411419_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411694_3412480_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412513_3413296_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413299_3413689_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414828_3415692_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415727_3416816_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416812_3417763_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418116_3421095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422021_3422900_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424848_3425799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425795_3426263_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426305_3427076_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427096_3427897_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427907_3429317_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429411_3430197_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430436_3431453_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431560_3431953_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432090_3432771_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432775_3433747_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3433842_3434793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	3440948	3500248	4107480	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440948_3442712_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442823_3443702_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443814_3444630_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444633_3444885_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444969_3445986_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446316_3446538_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448898_3449816_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450313_3451522_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451601_3453173_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453290_3454226_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454414_3455359_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455926_3461644_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461649_3462777_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462832_3463459_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463730_3464747_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464842_3465553_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465549_3466539_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466634_3468266_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468268_3469006_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469161_3470034_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470302_3471523_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471519_3472179_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472250_3472883_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472912_3473431_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473441_3474551_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474597_3475452_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475453_3476356_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477578_3478529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480285_3481275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481271_3481430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481450_3482239_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482235_3483267_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483285_3483849_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483904_3485425_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485688_3486393_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486400_3487138_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487243_3487618_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487660_3488950_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488946_3490116_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490112_3490952_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491011_3491947_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491959_3492910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3493008_3493971_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3494002_3494362_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494486_3495389_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495390_3497163_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497197_3497974_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499297_3500248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	3515186	3573259	4107480	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515186_3516137_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516265_3517399_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517442_3518348_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518350_3520051_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520047_3520968_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520975_3521953_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522011_3523046_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3525020_3525257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3525383_3526247_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526335_3527157_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527236_3527974_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527970_3528963_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529076_3529739_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529783_3530932_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533255_3534206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534546_3535497_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|3535595_3536546_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536842_3537340_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537382_3539158_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539165_3540032_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540038_3540773_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541942_3542737_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543026_3543617_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543650_3544979_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545053_3546199_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546310_3547309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547271_3547706_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549222_3550107_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550103_3551309_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551305_3552166_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552278_3554069_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554109_3554775_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554775_3555084_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555249_3556536_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_005012067.1|3557969_3558920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560871_3562086_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562191_3563181_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563177_3563786_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563798_3564428_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564424_3565045_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565076_3565868_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566719_3567175_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567193_3568120_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568173_3569460_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570390_3571263_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571259_3572210_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572308_3573259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP012082	Bordetella pertussis strain I743 chromosome, complete genome	4107480	4029651	4083083	4107480	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_014486111.1|4029651_4030602_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4030771_4031998_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4032197_4033064_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4033056_4034019_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4034119_4035070_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4035168_4036119_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4036217_4037168_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4037164_4038658_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4038654_4041762_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4044823_4046074_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4046254_4047016_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4047048_4047699_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4047701_4048541_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4048781_4049525_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4049607_4049955_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4050052_4050895_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4050939_4051827_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4051853_4052042_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4052139_4053597_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4053583_4055110_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4055128_4055596_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4055595_4056618_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4056738_4057458_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4057533_4058634_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4058635_4059826_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4059945_4060962_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4061280_4061952_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4061948_4062857_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4063068_4063716_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4067567_4068644_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4068654_4069464_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4069553_4070327_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4070327_4070492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4070509_4071460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4071348_4072371_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4072360_4073515_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4073554_4074967_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4075091_4075958_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4075959_4076784_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4076780_4077542_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4077622_4078309_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4078482_4079490_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4079486_4080266_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4080323_4081586_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4082132_4083083_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
