The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	27282	70036	4102205	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	77634	136108	4102205	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	164892	225403	4102205	transposase,protease,tRNA	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	233335	286923	4102205	transposase,protease,tRNA	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	390856	448365	4102205	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	590419	651610	4102205	transposase,protease	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|590419_591370_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|591866_592736_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592732_593554_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|624046_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|639096_640530_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|647292_648174_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	656934	703125	4102205	transposase,tRNA,tail,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|691844_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	709291	763221	4102205	transposase,tRNA	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761740_762169_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	814814	886827	4102205	transposase,holin	Acinetobacter_phage(20.0%)	60	NA	NA
WP_005013747.1|814814_815765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|815863_816520_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|816667_819376_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|819385_820405_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|820401_821352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|821450_821939_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|821935_822619_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|822648_826104_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|826139_827000_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|827128_828046_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|828183_829164_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|829223_831014_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|831010_831787_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|831796_832315_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|832427_834698_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|834909_837141_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|837441_837771_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|837787_839272_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|839282_840785_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|840781_842794_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|842811_843120_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|843116_843764_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|843781_844270_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|844291_845365_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|845364_847692_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|847707_849075_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|849071_849566_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|849611_850868_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|850870_851494_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|851568_852045_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|852081_852441_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|852629_853787_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|854099_855050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855067_855622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855623_856058_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856054_856489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856472_857276_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857292_858108_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858104_858920_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859066_859768_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859795_861754_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861836_862787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863007_863676_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863799_864906_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864918_868032_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868028_869522_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869536_870208_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870251_870746_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870886_871534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871637_873686_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873682_875695_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875720_877055_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877163_878156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878222_880307_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880331_881303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881431_882463_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882466_883618_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883788_884712_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884789_885614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	894461	957542	4102205	transposase,holin	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|894461_896693_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916906_917053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956591_957542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	976964	1047236	4102205	transposase	Streptococcus_phage(14.29%)	57	NA	NA
WP_005012067.1|976964_977915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977995_978907_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978967_980113_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980132_981047_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981118_981868_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981867_982797_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983040_984867_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984949_985591_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985813_986815_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988651_989716_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990513_991422_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992914_994189_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994342_994723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994730_995603_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995908_996289_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996499_997225_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997320_998271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998375_999425_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999562_1000579_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002087_1002660_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002719_1003451_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003502_1004420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005227_1008407_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008403_1009786_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009855_1010107_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010252_1010867_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011053_1013168_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013243_1014095_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014091_1014718_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014714_1016469_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016761_1019467_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019479_1021141_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021153_1022944_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023165_1024341_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024383_1025334_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025432_1026173_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026367_1028404_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028421_1029432_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029549_1030743_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030772_1031546_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031542_1032733_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032758_1033697_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033693_1036042_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036196_1036838_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036941_1038075_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038167_1038320_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038351_1038900_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038918_1039404_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039581_1040520_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040522_1040840_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040885_1041830_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043510_1044161_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044214_1044550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044546_1045407_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045423_1045705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045778_1046042_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046285_1047236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	1059454	1116836	4102205	transposase,protease,tRNA,holin	uncultured_Mediterranean_phage(37.5%)	46	NA	NA
WP_010931363.1|1059454_1060471_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061259_1062309_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062305_1063949_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063945_1064833_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064973_1065447_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065436_1066459_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066455_1067883_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068820_1069837_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070169_1071105_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071154_1073035_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073101_1073446_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073590_1074727_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074723_1075797_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075954_1077391_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077481_1078123_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078458_1079475_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082621_1084043_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084306_1085023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085107_1085425_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085465_1085879_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085880_1086240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086282_1087827_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087910_1088741_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088775_1089930_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089972_1090845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090961_1093250_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094456_1094921_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094947_1095898_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1096265_1097042_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097086_1097944_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097965_1098982_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099116_1100157_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100351_1102433_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102668_1104162_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104392_1105187_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105407_1106766_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106762_1107605_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107623_1109510_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109451_1109703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109747_1110380_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110398_1111001_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111152_1112103_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112683_1113391_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113749_1114736_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114875_1115889_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115885_1116836_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	1316906	1385393	4102205	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1316906_1317857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1318625_1319264_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1320153_1320600_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1320681_1321383_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1321383_1322151_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1322147_1323386_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1323385_1324312_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1324414_1325530_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1325545_1326496_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1326849_1327431_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1327427_1328261_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1328471_1329785_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1329961_1330843_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1330862_1331714_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1331766_1332855_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1332965_1334093_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1334327_1334939_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1335037_1335988_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1336209_1336587_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1336734_1337232_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1337228_1337756_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1337889_1338705_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1338717_1339899_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1339946_1340840_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1340966_1341437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1341562_1342390_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1342418_1343195_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1343191_1343467_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1343481_1343946_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1343957_1344659_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1344768_1345269_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1345351_1346530_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1348157_1348493_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1348680_1350129_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1350186_1350531_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1350637_1351177_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1351269_1352220_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1352318_1352726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1352958_1353390_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1353571_1353976_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1355212_1355536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1355538_1356426_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1356458_1356884_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1356955_1357309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1357548_1358055_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1358093_1359425_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1359484_1360300_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1360296_1361151_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1364213_1366757_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1368123_1369878_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1369874_1371995_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1371999_1374195_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1374191_1377533_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1380335_1381286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1381351_1381531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1381647_1382403_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1382389_1383535_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1384442_1385393_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	1445884	1501372	4102205	transposase,protease	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1445884_1446835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1448036_1448483_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1448475_1449951_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1449947_1450703_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1450695_1451706_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1451695_1453372_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1453684_1454017_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1454030_1454426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1454435_1454762_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1454758_1455085_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1455011_1456034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1456030_1456381_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1456428_1456857_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1456864_1458238_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1458378_1458756_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1459018_1460326_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1460386_1461217_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1461213_1461702_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1461743_1463264_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1463307_1463784_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1464587_1467185_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1467214_1468036_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1468762_1469512_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1469695_1470574_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1470671_1471388_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1471402_1471963_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1472129_1472894_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1472913_1473771_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1473767_1474967_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1475006_1476341_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1476393_1478730_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1478855_1479419_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1479427_1480519_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1480590_1481046_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1481046_1481841_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1481837_1483019_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1483005_1483611_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1483607_1484381_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1484392_1485220_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1485381_1487745_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1487812_1488532_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1488655_1489081_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1489115_1490066_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1490183_1491110_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1491175_1492333_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1492313_1492781_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1492928_1493879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1493895_1494330_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1494319_1494670_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1494866_1496021_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1496017_1497190_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1497237_1498131_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1498176_1498614_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1498673_1499363_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1499372_1500323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1500421_1501372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	1596069	1664155	4102205	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1596069_1596558_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1596675_1597254_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1597359_1597728_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1597826_1598777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1598783_1599896_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1600582_1601785_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1601820_1601967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1601988_1604649_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1604661_1608066_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1608733_1610959_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1611005_1611332_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1611382_1611991_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1612089_1613040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1613109_1613874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1613870_1614470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1614573_1615425_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1615484_1616111_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1616107_1617058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1617156_1618269_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1618258_1619260_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1619365_1620877_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1620873_1622178_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1622289_1622850_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1623117_1623672_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1624127_1624343_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1624597_1627195_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1627191_1628379_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1629037_1629652_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1629740_1630868_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1630879_1631785_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1632677_1633628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1633809_1634562_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1634630_1635290_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1635286_1636015_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1636027_1638307_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1638331_1638535_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1638576_1639209_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1639344_1640262_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1640258_1640972_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1641209_1641980_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1641984_1642584_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1642828_1644319_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1644377_1644662_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1644799_1644955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1645227_1646154_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1646290_1647031_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1647197_1648574_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1648755_1649661_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1651312_1653115_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1653241_1653883_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1653981_1654932_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1654953_1656174_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1656359_1657772_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1657835_1658903_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1658902_1660390_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1660399_1661344_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1661503_1662202_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1662279_1663185_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1663204_1664155_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	1700104	1755695	4102205	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1700104_1701055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1701113_1701887_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1701879_1703436_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1703432_1704383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1705709_1706312_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1706551_1707253_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1707246_1708029_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1708213_1709164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1709262_1710000_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1710189_1710948_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1710994_1711984_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1712161_1713130_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1714669_1715638_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1715646_1716588_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1717061_1718072_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1718062_1719577_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1719573_1720920_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1720922_1721957_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1722006_1723632_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1724184_1725135_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1725239_1726187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1726240_1728055_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1728047_1728722_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1728851_1731926_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1731939_1732239_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1732553_1733177_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1733420_1734290_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1734267_1735212_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1735297_1736224_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1736336_1737116_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1737106_1738303_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1738333_1739284_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1739505_1740195_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1740259_1741015_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1741066_1742059_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1742068_1743022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1743137_1744100_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1745501_1745930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1745926_1746877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1747170_1747908_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1748331_1749519_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1749522_1749903_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1751622_1752594_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1752607_1753321_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1753325_1754243_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1754349_1754646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1754744_1755695_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	1988458	2058110	4102205	transposase,tRNA	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1988458_1991116_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1991193_1992396_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1992392_1992905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1993027_1993465_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1993741_1994692_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1994790_1995741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1995994_1997800_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1997913_1998081_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1998144_1998381_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1998749_1999949_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2001464_2002415_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2002866_2003868_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2004040_2004898_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2004894_2006157_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2006257_2006632_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2006704_2007892_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2007976_2008747_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2008860_2009625_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2009575_2010877_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2010873_2011680_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2013424_2014396_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2014552_2015065_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2015223_2016198_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2017198_2017993_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2018018_2018825_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2018935_2019526_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2019536_2020715_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2020817_2021192_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2021444_2022776_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2022842_2026073_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2027563_2028310_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2028394_2028856_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2028893_2029952_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2029914_2031744_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2031783_2032356_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2033780_2034602_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2034920_2036243_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2036602_2037238_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2037197_2038148_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2039018_2039891_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2039968_2041108_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2041466_2042723_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2042728_2043256_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2043260_2044079_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2044078_2044801_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2044822_2045137_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2045154_2046303_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2046333_2047209_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2047205_2048525_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2048597_2049794_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2049804_2051292_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2053886_2054786_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2054923_2055889_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2055987_2056938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2057159_2058110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2069606	2119002	4102205	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2069606_2070557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2071694_2071991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2072165_2073518_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2073660_2074677_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2076656_2077670_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2077756_2078662_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2078818_2079163_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2079320_2079779_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2079792_2082009_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2082005_2083067_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2083095_2084070_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2084021_2084840_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2084852_2085461_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2085635_2086031_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2086049_2087489_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2087517_2087865_+	GFA family protein	NA	NA	NA	NA	NA
WP_010930363.1|2087883_2088834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2089486_2090437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2090520_2092338_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2092411_2093059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2093071_2094001_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2094170_2094635_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2094882_2095563_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2095611_2097303_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2097318_2097870_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2097866_2098238_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2098350_2099187_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2099197_2099722_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2099819_2099999_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2100128_2101103_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2101233_2101590_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2101579_2102455_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2102553_2103438_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2103459_2104755_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2105703_2106354_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2106441_2107962_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2108219_2110085_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2111130_2112081_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2112098_2112239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2113053_2113413_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2113400_2114837_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2114833_2115487_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2115483_2116677_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2116780_2118055_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2118051_2119002_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2130206	2198582	4102205	transposase,protease,tRNA	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2130206_2131157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2131116_2131530_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2131814_2132114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2132523_2134806_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2135271_2135466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2135491_2137522_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2137541_2137754_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2138031_2138571_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2138684_2139980_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2140056_2141214_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2141397_2142297_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2142315_2143620_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2143585_2144692_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2144779_2145016_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2145154_2146225_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2146228_2147584_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2147610_2148771_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2148773_2149412_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2149413_2150700_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2150758_2152054_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2152060_2152567_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2152563_2153712_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2153739_2154165_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2154487_2157370_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2157462_2158218_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2158983_2160333_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2160431_2161382_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2161480_2162431_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2162504_2162978_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2163003_2164212_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2164208_2164982_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2164981_2165605_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2165770_2166031_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2166334_2166916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2166982_2167237_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2167223_2169848_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2169919_2170738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2170734_2171340_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2171377_2172511_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2174226_2174601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2174698_2175973_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2175976_2177554_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2178460_2179816_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2179812_2181447_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2181439_2182270_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2182287_2183232_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2183284_2184859_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2184906_2185266_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2185258_2185579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2185694_2186627_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2186729_2187686_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2187835_2189173_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2189177_2190434_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2190629_2191676_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2191733_2192102_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2192232_2193105_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2193181_2194084_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2195140_2196358_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2197631_2198582_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2213860	2278681	4102205	transposase,protease,tRNA	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2213860_2214811_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2215381_2215594_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2215611_2216343_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2216377_2217019_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2217011_2217680_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2219892_2220669_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2220690_2221848_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2221844_2222276_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2222272_2223076_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2223089_2223491_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2223557_2224529_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2224594_2225818_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2226045_2226996_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2227119_2229573_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2229761_2231066_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2231170_2231824_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2231826_2233137_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2233333_2233894_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2234005_2234206_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2234551_2235118_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2235201_2235405_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2235711_2236032_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2236073_2236355_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2236429_2237686_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2238068_2238398_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2239968_2240790_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2240789_2241929_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2241935_2242832_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2242828_2244754_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2245113_2247726_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2247778_2250079_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2250075_2251284_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2251545_2251920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2251916_2252867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2252965_2254960_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2255019_2255985_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2255974_2258836_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2258838_2259345_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2259449_2260658_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2260659_2261598_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2261759_2262233_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2262229_2263180_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2263290_2263731_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2263859_2265089_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2265127_2265949_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2266002_2267154_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2267245_2267734_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2270284_2272834_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2272904_2275478_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2275743_2275944_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2275975_2276137_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2276194_2276533_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2276681_2277632_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2277730_2278681_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2349357	2412935	4102205	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2349357_2350308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2350609_2351086_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2351709_2353347_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2353377_2354691_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2354824_2355142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2355242_2356565_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2356561_2357512_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2357610_2358561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2359090_2360113_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2360141_2360972_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2360988_2362686_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2362750_2363827_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2363986_2364850_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2364880_2365450_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2365466_2366318_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2367375_2368257_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2368331_2369321_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2369383_2370334_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2370396_2371254_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2371313_2371802_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2373374_2374565_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2374561_2376148_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2376166_2377234_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2377338_2378883_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2379302_2380877_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2380984_2382001_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2381997_2382837_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2382841_2384479_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2384475_2385426_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2385568_2386843_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2386872_2387163_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2387235_2388249_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2388268_2389531_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2389533_2390457_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2390453_2391947_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2391957_2392890_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2393071_2394397_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2394431_2395775_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2395847_2397368_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2397522_2398254_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2398321_2399662_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2399677_2400589_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2400579_2401173_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2401234_2401621_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2401632_2402103_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2402114_2402738_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2402758_2405506_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2411984_2412935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2684921	2725590	4102205	transposase,tRNA	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2684921_2685872_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2685982_2686165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2686264_2686861_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2687044_2688136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2688635_2689046_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2689104_2689446_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2689451_2691869_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2691881_2692904_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2692978_2693338_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2693353_2693551_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2693886_2694837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2695031_2695481_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2695477_2696428_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2696538_2697987_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2698101_2698383_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2698486_2699437_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2699681_2700395_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2700517_2700745_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2701039_2701678_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2701786_2702821_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2702817_2703768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2704183_2704708_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2704711_2704981_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2705179_2706241_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2706324_2707959_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2707960_2708764_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2708792_2709752_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2709755_2711270_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2711306_2712311_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2712742_2713213_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2713248_2713860_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2713890_2714514_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2714594_2716127_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2716161_2717403_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2717446_2718478_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2718474_2719644_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2719637_2720318_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2720479_2721322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2721484_2722456_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2722627_2723506_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2723528_2724599_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2724639_2725590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2781055	2853925	4102205	transposase,tRNA	Moraxella_phage(16.67%)	58	NA	NA
WP_003810909.1|2781055_2781472_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2781582_2782215_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2782243_2782687_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2782708_2783800_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2783854_2784655_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2784790_2785411_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2785550_2786024_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2787163_2788114_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2788110_2795772_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2796012_2800059_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2800371_2800953_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2800949_2802248_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2802327_2803356_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2803616_2804567_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2804563_2805514_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2805830_2806436_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2806489_2807803_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2807877_2808348_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2808347_2809136_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2809146_2810799_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2810886_2811837_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2812998_2813505_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2813501_2814266_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2814281_2814566_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2814630_2815620_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2815791_2816721_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2816692_2817379_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2817412_2817958_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2818002_2819268_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2819264_2820167_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2821348_2822293_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2822387_2823905_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2823946_2825575_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2825682_2826564_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2829676_2830051_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2830075_2830414_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2830457_2832092_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2832130_2833477_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2833584_2835006_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2835075_2835660_-	nitroreductase	NA	NA	NA	NA	NA
WP_010929591.1|2835762_2836713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2836847_2837954_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2837964_2839062_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2839206_2840412_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2840418_2840940_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2840936_2841428_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2841424_2841676_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2841656_2842142_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2842277_2845739_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2845756_2846641_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2846650_2847082_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2847328_2847832_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2847909_2849310_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2849384_2850260_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2850256_2851264_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2851731_2852037_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2852127_2852718_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2852908_2853925_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2857068	2923879	4102205	transposase,protease	uncultured_Mediterranean_phage(28.57%)	49	NA	NA
WP_023995489.1|2857068_2858019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2858117_2859068_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2859064_2859859_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2859890_2860595_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2860669_2861470_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2861466_2861874_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2861870_2862512_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2862504_2864505_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2865765_2867097_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2867093_2868044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2869750_2870017_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2870724_2871063_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2875616_2876219_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2876315_2877605_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2877662_2878394_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2878390_2879194_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2879190_2880279_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2880275_2881205_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2881353_2882499_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2882520_2883471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2883801_2887623_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2887779_2888448_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2888452_2890126_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2890144_2891464_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2891468_2893784_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2893839_2896008_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2896004_2901194_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2901283_2901598_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2901825_2902071_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2902165_2902684_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2902783_2903989_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2904104_2905502_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2905618_2906197_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2906269_2907661_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2907828_2908779_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2909059_2909680_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2909676_2910090_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2910086_2911130_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2911185_2911374_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2911383_2912148_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2912238_2912895_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2912986_2913745_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2913770_2915372_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2915572_2916577_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2916677_2916941_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2917058_2917835_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2918425_2919376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2921759_2922872_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2922928_2923879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	2954265	2997956	4102205	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2954265_2955216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2955336_2956233_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2958510_2960736_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2960900_2961989_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2961945_2962599_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2962646_2963444_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2963975_2964926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2965000_2966155_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2966211_2967162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2967260_2967566_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2967594_2968029_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2968030_2969275_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2969271_2969982_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2969996_2970908_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2971270_2971675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2971671_2972130_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2972136_2973045_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2973041_2973908_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2973894_2974722_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2974732_2975860_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2976937_2978176_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2978217_2979480_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2979486_2980239_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2980290_2980476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2980751_2981216_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2981247_2981907_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2982051_2984160_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2984156_2985107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2985210_2985831_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2985922_2986675_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2987809_2988934_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2988979_2989348_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2989589_2990540_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2991575_2992118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2992503_2993454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2993450_2994416_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2994485_2995322_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2995834_2996944_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|2997005_2997956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	3182374	3244608	4102205	transposase,protease	Xanthomonas_phage(33.33%)	51	NA	NA
WP_005012067.1|3182374_3183325_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931248.1|3183333_3183882_+	lipid IV(A) palmitoyltransferase PagP	NA	NA	NA	NA	NA
WP_003814557.1|3183878_3184487_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814558.1|3184669_3185140_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931250.1|3185146_3186406_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010931251.1|3186458_3187271_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814561.1|3187385_3187940_+	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_023998380.1|3187949_3188939_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814563.1|3189118_3189838_-	VOC family protein	NA	NA	NA	NA	NA
WP_003814564.1|3189854_3192590_-	preprotein translocase subunit SecA	NA	NA	NA	NA	NA
WP_003814565.1|3192769_3193756_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	51.8	3.4e-27
WP_010931255.1|3193884_3194292_+	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_003814567.1|3194403_3195327_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA	NA
WP_003814568.1|3195555_3196740_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003814569.1|3196928_3198155_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003814570.1|3198159_3198981_-	cell division protein FtsQ/DivIB	NA	NA	NA	NA	NA
WP_003814571.1|3198993_3199944_-	D-alanine--D-alanine ligase	NA	NA	NA	NA	NA
WP_010931256.1|3199940_3201347_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010931257.1|3201343_3202417_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_010931258.1|3202413_3203607_-	putative lipid II flippase FtsW	NA	NA	NA	NA	NA
WP_010931259.1|3203603_3205136_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_019247664.1|3205132_3206302_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_010931260.1|3206291_3209129_-	bifunctional UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase MurE/UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase MurF	NA	NA	NA	NA	NA
WP_010931261.1|3209125_3210856_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_010931262.1|3210852_3211131_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003814582.1|3211130_3212225_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_010931263.1|3212233_3212662_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_010931264.1|3213464_3215273_+	ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	28.6	1.6e-43
WP_010931265.1|3215312_3216392_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820761.1|3216388_3217582_-	amidohydrolase	NA	NA	NA	NA	NA
WP_003814592.1|3217731_3218010_+	SWIB/MDM2 domain-containing protein	NA	NA	NA	NA	NA
WP_003814593.1|3218339_3218732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820758.1|3225456_3225933_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931267.1|3226085_3227198_+	4-hydroxyphenylpyruvate dioxygenase	NA	NA	NA	NA	NA
WP_010931268.1|3227265_3227826_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_010929235.1|3227849_3228182_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010931269.1|3228165_3229854_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003820749.1|3229973_3230762_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_005012808.1|3231469_3232420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3232864_3233176_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3233175_3233706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3233868_3234819_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3235108_3235573_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3235587_3237093_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_023853019.1|3237349_3238954_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3239009_3239915_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3240355_3241306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3241387_3241969_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3242393_3242699_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3242712_3244047_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3244068_3244608_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 27
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	3263031	3314950	4102205	transposase,tRNA,holin	Tupanvirus(16.67%)	40	NA	NA
WP_010931277.1|3263031_3263367_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3263366_3264209_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3264307_3265258_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3265322_3266294_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3266357_3267377_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3267378_3268752_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3269029_3269710_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_023995440.1|3269722_3271849_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.5e-14
WP_010931274.1|3271845_3272940_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3272954_3274214_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931273.1|3274233_3275958_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	9.5e-49
WP_003818450.1|3276196_3276949_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3277087_3278038_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3278350_3279829_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3279835_3280945_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3280956_3281637_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3281658_3282414_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3282549_3283434_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3283521_3284103_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3284363_3284663_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3284814_3285294_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3286013_3287450_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3287446_3287950_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3287965_3288916_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3289443_3290217_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3290349_3291360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3291511_3293167_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3293221_3293563_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3293576_3295016_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3295148_3295964_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3296157_3297108_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3298495_3299443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3299669_3300410_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3300495_3301446_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3302887_3304459_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3304791_3306645_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_019247178.1|3306689_3309254_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3309672_3310623_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3313488_3313983_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3313999_3314950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	3376853	3430594	4102205	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077069052.1|3376853_3377804_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3378208_3378853_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3378877_3379462_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3379562_3380180_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3380182_3381898_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3381894_3382203_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3382219_3382837_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3382881_3383184_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3383284_3384139_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3384326_3384551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3384720_3384993_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3385410_3385818_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3386187_3386982_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3387082_3388318_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3388386_3389403_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3389414_3390791_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3390787_3391984_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3391980_3393519_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3393515_3394775_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3396715_3397666_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3398432_3399527_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3399519_3400854_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3400807_3401491_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3401516_3402680_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3402676_3403678_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3403677_3404550_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3404546_3405296_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3405292_3406084_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3406080_3407220_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3407495_3408281_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3408314_3409097_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3409100_3409490_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3410629_3411493_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3411528_3412617_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3412613_3413564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3413917_3416896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3417822_3418701_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3420649_3421600_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3421596_3422064_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3422106_3422877_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3422897_3423698_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3423708_3425118_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3425212_3425998_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3426237_3427254_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3427361_3427754_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3427891_3428572_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3428576_3429548_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3429643_3430594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	3436749	3496049	4102205	transposase,tRNA	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3436749_3438513_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3438624_3439503_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3439615_3440431_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3440434_3440686_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3440770_3441787_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3442117_3442339_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3444699_3445617_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3446114_3447323_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3447402_3448974_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3449091_3450027_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3450215_3451160_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3451727_3457445_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3457450_3458578_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3458633_3459260_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3459531_3460548_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3460643_3461354_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3461350_3462340_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3462435_3464067_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3464069_3464807_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3464962_3465835_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3466103_3467324_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3467320_3467980_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3468051_3468684_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3468713_3469232_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3469242_3470352_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3470398_3471253_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3471254_3472157_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3473379_3474330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3476086_3477076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3477072_3477231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3477251_3478040_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3478036_3479068_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3479086_3479650_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3479705_3481226_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3481489_3482194_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3482201_3482939_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3483044_3483419_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3483461_3484751_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3484747_3485917_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3485913_3486753_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3486812_3487748_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3487760_3488711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3488809_3489772_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3489803_3490163_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3490287_3491190_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3491191_3492964_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3492998_3493775_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3495098_3496049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP012080	Bordetella pertussis strain I106 chromosome, complete genome	4102205	3510987	3569060	4102205	transposase,tRNA	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3510987_3511938_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3512066_3513200_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3513243_3514149_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3514151_3515852_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3515848_3516769_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3516776_3517754_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3517812_3518847_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3520821_3521058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3521184_3522048_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3522136_3522958_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3523037_3523775_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3523771_3524764_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3524877_3525540_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3525584_3526733_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3529056_3530007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3530347_3531298_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3531396_3532347_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3532643_3533141_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3533183_3534959_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3534966_3535833_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3535839_3536574_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3537743_3538538_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3538827_3539418_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3539451_3540780_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3540854_3542000_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3542111_3543110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3543072_3543507_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3545023_3545908_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3545904_3547110_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3547106_3547967_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3548079_3549870_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3549910_3550576_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3550576_3550885_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3551050_3552337_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3553770_3554721_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3556672_3557887_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3557992_3558982_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3558978_3559587_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3559599_3560229_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3560225_3560846_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3560877_3561669_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3562520_3562976_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3562994_3563921_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3563974_3565261_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3566191_3567064_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3567060_3568011_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3568109_3569060_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
