The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	27282	70036	4105309	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_077069058.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	77634	136108	4105309	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	164893	225404	4105309	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189530_190004_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193074_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206742_207066_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207170_208211_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209041_209338_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209363_209639_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209695_210340_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210339_211026_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211155_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212057_212783_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214275_215208_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033446404.1|215665_218461_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219054_221997_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222068_222788_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222826_223375_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224453_225404_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	233336	286924	4105309	tRNA,protease,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233336_234287_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234373_235324_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235320_236271_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236369_237167_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238116_238527_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240335_241379_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241549_243652_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245062_246019_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246525_247881_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247881_248580_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249530_250580_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250685_251627_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251623_253513_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253599_254238_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255696_256233_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256384_257776_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257792_258773_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258908_259892_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262724_263849_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263862_264843_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265573_266524_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267083_267629_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267712_269332_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269347_270502_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270515_270641_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270637_272389_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272385_274065_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274127_274676_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275818_276097_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277140_278091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278368_278530_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278537_278678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279196_279646_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279655_280267_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280425_281280_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281299_282682_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282746_283388_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283527_283986_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284010_284787_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284840_285977_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285973_286924_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	469550	586396	4105309	tRNA,transposase	Acinetobacter_phage(22.22%)	101	NA	NA
WP_010929956.1|469550_470501_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|471223_472498_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|472584_473667_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|473677_474490_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|474526_474853_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|474857_475418_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|475658_476651_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|476669_477665_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069059.1|477680_479057_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|479049_481431_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|481447_481837_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|481963_482194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|482298_483249_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|483347_484298_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|484294_485167_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|486097_487384_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|487437_488364_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|488382_488838_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|489689_490481_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|490512_491133_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|491129_491759_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|491771_492380_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|492376_493366_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|493471_494686_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|496637_497588_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|499021_500308_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|500473_500782_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|500782_501448_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|501488_503279_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|503391_504252_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|504248_505454_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|505450_506335_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|507851_508286_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|508248_509247_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|509358_510504_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|510578_511907_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|511940_512531_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|512820_513615_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|514784_515519_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|515525_516392_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|516399_518175_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|518217_518715_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|519011_519962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|520060_521011_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|521351_522302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|524625_525774_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|525818_526481_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|526594_527587_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|527583_528321_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|528400_529222_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|529310_530174_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|530300_530537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|532511_533546_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|533604_534582_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|534589_535510_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|535506_537207_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|537209_538115_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|538158_539292_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|539420_540371_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|540469_542539_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|542581_544684_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|544990_546067_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|546142_547027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|547209_547632_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|547641_549042_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|549084_549990_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|550088_551630_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|551664_552204_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|552216_552687_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|552824_553067_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|553183_554065_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|554137_554458_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|555309_556260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|557583_558360_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|558394_560167_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|560168_561071_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|561195_561555_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|561586_562549_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|562647_563598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|563610_564546_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|564605_565445_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|565441_566611_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|566607_567897_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|567939_568314_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|568419_569157_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|569164_569869_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|570132_571653_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|571708_572272_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|572290_573322_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|573318_574107_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|574127_574286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|574282_575272_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|577028_577979_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|579201_580104_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|580105_580960_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|581006_582116_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|582126_582645_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|582674_583307_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|583378_584038_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|584034_585255_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|585523_586396_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	590810	654643	4105309	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|590810_591827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|592098_592725_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|592780_593908_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|593913_599631_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|600198_601143_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|601331_602267_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|602384_603956_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|604035_605244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|605741_606659_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|609019_609241_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|609571_610588_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|610672_610924_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|610927_611743_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|611855_612734_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|612845_614609_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|614724_616065_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|617134_618559_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|618558_619260_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|620764_621715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|621810_622782_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|622786_623467_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|623604_623997_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|624104_625121_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|625360_626146_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|626240_627650_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|627660_628461_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|628481_629252_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|629294_629762_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|629758_630709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|632657_633536_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|634462_637441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|637794_638745_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|638741_639830_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|639865_640729_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|641868_642258_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|642261_643044_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|643077_643863_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|644138_645278_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|645274_646066_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|646062_646812_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|646808_647681_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|647680_648682_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|648678_649842_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|649867_650551_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|650504_651839_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|651831_652926_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|653692_654643_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	673554	750863	4105309	tRNA,integrase,protease,transposase	Bacillus_phage(20.0%)	57	720691:720709	740579:740597
WP_023995489.1|673554_674505_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|674603_676079_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|677666_678554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|678556_679498_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|679543_681109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|682886_684212_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|684394_685852_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|685815_686313_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|686343_687315_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|687367_687805_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|687928_688597_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|689325_690429_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|690531_691809_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|691820_692846_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|692847_694218_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|694218_695355_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|695401_697327_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|697323_698445_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|698441_699596_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|699592_700723_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|700730_702296_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|702302_703685_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|703963_704575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|704666_706082_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|706099_706810_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|706806_708129_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|708208_710170_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|710295_711609_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|711717_713016_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|713198_714107_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|714116_714326_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|714337_716017_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|716118_717072_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|717162_717990_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|717988_719875_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|719871_720471_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|720519_721419_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
720691:720709	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|721627_722578_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|722700_723315_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|723443_724040_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|724036_724819_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|724891_725983_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|726262_727390_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|727731_728778_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|728925_732045_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|732046_734998_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|735013_736225_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_005013747.1|736408_737359_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|737375_737870_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|737873_738131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|738674_739586_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|739667_739952_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|740735_741686_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
740579:740597	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|742104_744669_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|744713_746567_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|746899_748471_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|749912_750863_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	996798	1099191	4105309	tRNA,transposase	Bacillus_virus(27.27%)	93	NA	NA
WP_003813026.1|996798_997914_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|998014_998833_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|998930_999542_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|999701_1001078_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1001140_1001599_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1001683_1002379_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1002440_1002722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1003284_1004037_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1004081_1005158_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1005154_1006105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1006207_1006870_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1006964_1007135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1007487_1008489_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1008491_1009688_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1009708_1010512_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1010592_1010889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1010919_1011483_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1011523_1012381_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1012388_1013138_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1013159_1014032_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1014060_1014840_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1014873_1015671_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1018325_1018718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1018711_1019572_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1019575_1020538_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1021314_1022004_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1022864_1023815_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1024164_1025034_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1025104_1025800_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1025789_1026299_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1026295_1027516_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1027463_1028366_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1029252_1030539_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1030577_1031951_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1031989_1032691_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1032989_1033979_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1034079_1034541_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1034556_1035105_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1035246_1036722_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1036827_1037919_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1037922_1038705_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1038714_1039503_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1040628_1041063_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1041059_1042070_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1042113_1043040_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1043326_1043695_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1043911_1044862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1044906_1047333_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1047381_1048074_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1048146_1049346_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1049363_1050269_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1050384_1051314_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1051339_1052686_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1052713_1053463_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1053476_1054259_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1054451_1055402_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1055463_1056573_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1057085_1057922_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1057991_1058957_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1058953_1059904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1060289_1060832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1061867_1062818_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1063059_1063428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1063473_1064598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1065732_1066485_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1066576_1067197_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1067300_1068251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1068247_1070356_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1070500_1071160_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1071191_1071656_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1071931_1072117_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1072168_1072921_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1072927_1074190_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1074231_1075470_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1076547_1077675_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1077685_1078513_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1078499_1079366_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1080732_1081137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1081228_1082179_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446288.1|1082548_1083460_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1083474_1084185_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1084181_1085426_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1085427_1085862_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1085890_1086196_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1086294_1087245_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1087301_1088456_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1088530_1089481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1090012_1090810_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1090857_1091511_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1091467_1092556_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1092720_1094946_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1097223_1098120_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1098240_1099191_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	1129577	1200548	4105309	protease,transposase	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1129577_1130528_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1130584_1131697_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1134080_1135031_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1135621_1136398_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1136515_1136779_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1136879_1137884_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1138084_1139686_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1139711_1140470_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1140561_1141218_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1141308_1142073_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1142082_1142271_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1142326_1143370_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1143366_1143780_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1143776_1144397_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1144677_1145628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1145795_1147187_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1147259_1147838_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1147954_1149352_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1149467_1150673_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1150772_1151291_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1151385_1151631_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1151858_1152173_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1152262_1157452_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1157448_1159617_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1159672_1161988_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1161992_1163312_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1163330_1165004_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1165008_1165677_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1165833_1169655_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1169985_1170936_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1170957_1172103_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1172251_1173181_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1173177_1174266_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1174262_1175066_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1175062_1175794_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1175851_1177141_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1177237_1177840_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1182393_1182732_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1183439_1183706_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1185412_1186363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1186359_1187691_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1188951_1190952_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1190944_1191586_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1191582_1191990_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1191986_1192787_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1192861_1193566_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1193597_1194392_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1194388_1195339_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1195437_1196388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1196486_1196921_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1197003_1199340_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1199531_1200548_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	1247941	1328816	4105309	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1247941_1248892_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1248888_1249839_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1250099_1251128_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1251207_1252506_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1252502_1253084_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1253396_1257443_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1257683_1265345_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1265341_1266292_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1267431_1267905_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1268044_1268665_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1268800_1269601_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1269655_1270747_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1270768_1271212_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1271240_1271873_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1271983_1272400_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1272392_1273085_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1273191_1273566_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1273642_1274452_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1274547_1275492_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1275530_1276502_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1276592_1277030_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1277088_1277970_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1278973_1279834_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1279866_1281249_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1281245_1282265_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1282637_1283132_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1283139_1283880_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1283960_1285565_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1285604_1286393_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1287595_1288684_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1289564_1290377_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1290389_1290698_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1290815_1292546_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1292547_1293693_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1293822_1294491_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1294612_1295080_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1295215_1296598_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1296594_1297719_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1297715_1300352_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1300767_1301718_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1305464_1306076_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1306298_1307759_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1307855_1309448_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1309801_1310059_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1310060_1311401_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1311496_1312186_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1312198_1313629_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1315353_1316175_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1316185_1317757_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1317785_1318763_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1318789_1319593_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1319589_1320384_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1320391_1321627_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1321619_1322054_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1322803_1323754_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1324375_1326103_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1326214_1327573_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1327865_1328816_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	1448211	1500364	4105309	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1448211_1449162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1449328_1449682_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1449694_1450057_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1450098_1450524_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1450726_1451983_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1452181_1453162_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1453311_1454553_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1454651_1455602_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1455610_1456306_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1459127_1459727_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1459737_1461903_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1461926_1463711_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1463710_1463800_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1464494_1464767_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1464766_1466833_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1466829_1467780_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1467878_1468829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1468944_1469277_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1469273_1469960_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1469946_1470906_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1470947_1473308_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1473307_1473940_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1474041_1475382_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1475428_1476784_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1476909_1477554_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1477498_1477816_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1478088_1478604_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1478697_1478859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1478874_1479630_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1479968_1480175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1480182_1480842_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1481136_1483341_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1483451_1484675_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1484797_1485772_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1485839_1487033_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1487047_1487848_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1487844_1489701_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1489697_1490303_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1490321_1491707_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1492432_1493659_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1493747_1494530_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1494628_1495579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1495605_1496379_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1496390_1497632_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1499413_1500364_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	1544289	1612375	4105309	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1544289_1544778_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1544895_1545474_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1545579_1545948_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1546046_1546997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1547003_1548116_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1548802_1550005_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1550040_1550187_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1550208_1552869_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1552881_1556286_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1556953_1559179_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1559225_1559552_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1559602_1560211_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1560309_1561260_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1561329_1562094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1562090_1562690_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1562793_1563645_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1563704_1564331_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1564327_1565278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1565376_1566489_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1566478_1567480_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1567585_1569097_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1569093_1570398_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1570509_1571070_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1571337_1571892_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1572347_1572563_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1572817_1575415_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1575411_1576599_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_019248658.1|1577257_1577872_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010930437.1|1577960_1579088_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1579099_1580005_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1580897_1581848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1582029_1582782_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1582850_1583510_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1583506_1584235_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1584247_1586527_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1586551_1586755_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1586796_1587429_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1587564_1588482_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1588478_1589192_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1589429_1590200_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1590204_1590804_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1591048_1592539_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1592597_1592882_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1593019_1593175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1593447_1594374_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1594510_1595251_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1595417_1596794_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1596975_1597881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1599532_1601335_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1601461_1602103_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1602201_1603152_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1603173_1604394_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1604579_1605992_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1606055_1607123_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1607122_1608610_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1608619_1609564_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1609723_1610422_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1610499_1611405_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1611424_1612375_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	1648324	1703915	4105309	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1648324_1649275_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1649333_1650107_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1650099_1651656_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1651652_1652603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1653929_1654532_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1654771_1655473_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1655466_1656249_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1656433_1657384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1657482_1658220_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1658409_1659168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1659214_1660204_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1660381_1661350_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1662889_1663858_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1663866_1664808_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1665281_1666292_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1666282_1667797_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1667793_1669140_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1669142_1670177_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1670226_1671852_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1672404_1673355_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1673459_1674407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1674460_1676275_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1676267_1676942_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1677071_1680146_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1680159_1680459_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1680773_1681397_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1681640_1682510_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1682487_1683432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1683517_1684444_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1684556_1685336_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1685326_1686523_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1686553_1687504_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1687725_1688415_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1688479_1689235_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1689286_1690279_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1690288_1691242_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1691357_1692320_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1693721_1694150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1694146_1695097_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1695390_1696128_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1696551_1697739_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1697742_1698123_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1699842_1700814_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1700827_1701541_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1701545_1702463_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1702569_1702866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1702964_1703915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	1936679	2006331	4105309	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1936679_1939337_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1939414_1940617_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1940613_1941126_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1941248_1941686_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1941962_1942913_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1943011_1943962_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1944215_1946021_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1946134_1946302_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1946365_1946602_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1946970_1948170_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1949685_1950636_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1951087_1952089_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1952261_1953119_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1953115_1954378_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1954478_1954853_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1954925_1956113_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1956197_1956968_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1957081_1957846_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1957796_1959098_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1959094_1959901_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1961645_1962617_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1962773_1963286_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1963444_1964419_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1965419_1966214_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1966239_1967046_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1967156_1967747_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1967757_1968936_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1969038_1969413_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1969665_1970997_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1971063_1974294_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1975784_1976531_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1976615_1977077_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1977114_1978173_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1978135_1979965_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|1980004_1980577_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|1982001_1982823_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|1983141_1984464_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|1984823_1985459_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|1985418_1986369_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|1987239_1988112_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|1988189_1989329_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|1989687_1990944_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|1990949_1991477_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|1991481_1992300_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|1992299_1993022_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|1993043_1993358_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|1993375_1994524_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|1994554_1995430_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|1995426_1996746_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|1996818_1998015_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|1998025_1999513_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2002107_2003007_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2003144_2004110_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2004208_2005159_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2005380_2006331_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	2017827	2066184	4105309	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2017827_2018778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2018876_2019173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2019347_2020700_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2020842_2021859_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2023838_2024852_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2024938_2025844_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2026000_2026345_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2026502_2026961_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2026974_2029191_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2029187_2030249_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2030277_2031252_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2031203_2032022_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2032034_2032643_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2032817_2033213_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2033231_2034671_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2034699_2035047_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2035065_2036016_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2036668_2037619_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2037702_2039520_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2039593_2040241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2040253_2041183_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2041352_2041817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2042064_2042745_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2042793_2044485_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2044500_2045052_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2045048_2045420_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2045532_2046369_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2046379_2046904_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2047001_2047181_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2047310_2048285_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2048415_2048772_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2048761_2049637_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2049735_2050620_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2050641_2051937_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2052885_2053536_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2053623_2055144_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2055401_2057267_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2058312_2059263_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2059280_2059421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2060235_2060595_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2060582_2062019_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2062015_2062669_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2062665_2063859_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2063962_2065237_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2065233_2066184_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	2077388	2145764	4105309	tRNA,protease,transposase	Klosneuvirus(22.22%)	59	NA	NA
WP_005013747.1|2077388_2078339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2078298_2078712_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2078996_2079296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2079705_2081988_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2082453_2082648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2082673_2084704_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2084723_2084936_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2085213_2085753_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2085866_2087162_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2087238_2088396_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2088579_2089479_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2089497_2090802_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2090767_2091874_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2091961_2092198_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2092336_2093407_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2093410_2094766_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2094792_2095953_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2095955_2096594_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2096595_2097882_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2097940_2099236_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2099242_2099749_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2099745_2100894_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2100921_2101347_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2101669_2104552_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2104644_2105400_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2106165_2107515_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2107613_2108564_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2108662_2109613_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2109686_2110160_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2110185_2111394_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2111390_2112164_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2112163_2112787_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2112952_2113213_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2113516_2114098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2114164_2114419_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2114405_2117030_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2117101_2117920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2117916_2118522_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2118559_2119693_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2121408_2121783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2121880_2123155_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2123158_2124736_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2125642_2126998_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2126994_2128629_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2128621_2129452_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2129469_2130414_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2130466_2132041_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2132088_2132448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2132440_2132761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2132876_2133809_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2133911_2134868_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2135017_2136355_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2136359_2137616_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2137811_2138858_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2138915_2139284_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2139414_2140287_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2140363_2141266_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2142322_2143540_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2144813_2145764_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	2161042	2225863	4105309	tRNA,protease,transposase	Lake_Baikal_phage(18.18%)	54	NA	NA
WP_005012067.1|2161042_2161993_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2162563_2162776_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2162793_2163525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2163559_2164201_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2164193_2164862_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2167074_2167851_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2167872_2169030_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2169026_2169458_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2169454_2170258_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2170271_2170673_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2170739_2171711_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2171776_2173000_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2173227_2174178_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2174301_2176755_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2176943_2178248_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2178352_2179006_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2179008_2180319_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2180515_2181076_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2181187_2181388_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2181733_2182300_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2182383_2182587_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2182893_2183214_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2183255_2183537_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2183611_2184868_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2185250_2185580_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2187150_2187972_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2187971_2189111_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2189117_2190014_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2190010_2191936_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2192295_2194908_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2194960_2197261_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2197257_2198466_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2198727_2199102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2199098_2200049_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2200147_2202142_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2202201_2203167_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2203156_2206018_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2206020_2206527_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2206631_2207840_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2207841_2208780_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2208941_2209415_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2209411_2210362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2210472_2210913_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2211041_2212271_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2212309_2213131_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2213184_2214336_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2214427_2214916_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2217466_2220016_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2220086_2222660_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2222925_2223126_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2223157_2223319_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2223376_2223715_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2223863_2224814_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2224912_2225863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	2504009	2562253	4105309	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2504009_2504960_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2505439_2506096_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2506110_2507778_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2507780_2508410_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2508621_2509716_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2509860_2510673_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2510676_2512380_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2512430_2513561_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2513747_2514824_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2514905_2515556_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2515570_2516974_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2517257_2518076_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2518072_2518777_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2519676_2520792_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2520825_2521200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2521222_2522380_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2522392_2522626_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2523260_2526230_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2526244_2526454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2526605_2527235_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2527231_2529322_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2529345_2530026_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2530022_2530583_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2530589_2531687_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2531839_2532433_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2532429_2533722_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2533735_2534278_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2534287_2535124_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2535157_2536219_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2536260_2537313_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2537328_2537631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2537772_2538723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2538901_2540596_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2540592_2541678_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2541725_2542625_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2542635_2543280_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2544301_2547544_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2547554_2548709_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2548935_2549898_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2549996_2550947_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2551045_2551996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2552005_2552695_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2552754_2553192_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2553237_2554131_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2554178_2555351_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2555347_2556502_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2556698_2557049_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2557038_2557473_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2557489_2558440_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2558587_2559055_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2559035_2560193_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2560258_2561185_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2561302_2562253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	2604532	2671032	4105309	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2604532_2605483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2605852_2606425_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2606427_2607438_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2607430_2607931_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2607941_2608283_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2608294_2609086_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2609102_2609372_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2609394_2610183_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2610229_2611246_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2611462_2612905_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2613083_2614703_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2614823_2616644_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2616722_2618255_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2618288_2619935_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2620004_2621027_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2621044_2622178_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2622180_2622870_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2622869_2623655_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2623698_2624463_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2624501_2625923_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2625988_2626693_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2626740_2627160_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2627172_2627580_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2627763_2628474_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2628600_2628891_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2628908_2629391_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2633896_2635051_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2635356_2636373_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2636619_2637408_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2637474_2638155_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2638151_2638922_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2639020_2639971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2640026_2640944_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2640954_2642133_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2642152_2643148_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2644736_2645345_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2645332_2646373_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2646390_2647353_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2647349_2648543_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2648539_2649337_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2649362_2650349_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2650367_2652407_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2652608_2653289_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2653302_2654214_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2654210_2654789_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2654927_2655833_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2655840_2659260_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2659247_2661848_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2662803_2663436_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2663829_2664588_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2664584_2665787_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2665974_2666925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2667832_2668978_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2668964_2669720_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2669836_2670016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2670081_2671032_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	2870420	2943745	4105309	tRNA,protease,transposase	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2870420_2871776_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2873254_2873977_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2874031_2875015_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2875144_2876095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2876091_2876994_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2877081_2877840_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2877852_2878944_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2879041_2880469_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2880698_2881913_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2881958_2884829_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2887239_2887728_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2887853_2890550_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2890704_2892987_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2893160_2893784_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2893882_2894833_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2894879_2895434_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2895501_2896347_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2896416_2897385_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2897384_2898248_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2901080_2905007_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2905742_2908973_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2909254_2910082_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2910115_2910811_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2910803_2912084_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2912093_2913071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2913052_2914753_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2914855_2915959_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2915989_2916745_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2916751_2918272_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2918314_2918617_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2918613_2919246_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2919324_2921190_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2921186_2921981_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2922009_2923125_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2924029_2924908_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2924907_2925732_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2925899_2926850_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2927062_2929912_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2929893_2930622_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2930762_2932226_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2932222_2932594_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2932611_2933925_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2933961_2934420_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2934532_2935483_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2935479_2936493_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2936632_2937619_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2937977_2938685_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2939265_2940216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2940367_2940970_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2940988_2941621_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2941665_2941917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2941858_2943745_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 22
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	2955470	3010063	4105309	holin,tRNA,transposase	uncultured_Mediterranean_phage(42.86%)	48	NA	NA
WP_005013747.1|2955470_2956421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2956447_2956912_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2958118_2960407_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2960523_2961396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2961438_2962593_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2962627_2963458_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2963541_2965086_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2965128_2965488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2965489_2965903_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2965943_2966261_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2966345_2967062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2967325_2968747_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_010929626.1|2969949_2970900_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853536.1|2972942_2973959_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2974294_2974936_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2975026_2976463_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|2976620_2977694_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|2977690_2978827_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|2978971_2979316_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|2979382_2981263_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|2981312_2982248_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|2982580_2983597_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|2984534_2985962_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|2985958_2986981_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|2986970_2987444_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|2987584_2988472_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|2988468_2990112_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|2990108_2991158_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|2991946_2992963_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|2993062_2993695_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|2993703_2994093_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|2994145_2995198_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|2996061_2997768_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|2997841_2998342_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|2998356_3000414_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3000440_3000734_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3000835_3001783_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3001795_3002671_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3002791_3003352_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3003386_3003710_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3004145_3004883_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3005181_3006132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809486.1|3006375_3006639_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_003819817.1|3006712_3006994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|3007010_3007871_-	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003809479.1|3007867_3008203_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930141.1|3008256_3008907_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|3009112_3010063_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	3028132	3100621	4105309	transposase	Bacillus_virus(16.67%)	57	NA	NA
WP_010929584.1|3028132_3029083_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3029125_3030301_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3030522_3032313_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3032325_3033987_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3033999_3036705_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3036997_3038752_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3038748_3039375_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3039371_3040223_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3040298_3042413_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3042599_3043214_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3043359_3043611_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3043680_3045063_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_029443805.1|3049041_3049959_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3050010_3050742_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3050801_3051374_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3052882_3053899_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3054036_3055086_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3055190_3056141_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3056236_3056962_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3057172_3057553_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3057858_3058731_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3058738_3059119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3059272_3060547_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3062034_3062943_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3063740_3064805_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3066641_3067643_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3067865_3068507_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3068589_3070416_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3070659_3071589_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3071588_3072338_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3072409_3073324_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3073343_3074489_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3074549_3075461_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3075541_3076492_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446303.1|3076590_3077175_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003821513.1|3077209_3078199_-	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_010930105.1|3078195_3079137_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_010930104.1|3079133_3080354_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930103.1|3080396_3080711_-	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930102.1|3080902_3081262_-	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930101.1|3081263_3082979_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930100.1|3083166_3083838_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930099.1|3083852_3085181_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930098.1|3085177_3086077_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930097.1|3086163_3087249_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930096.1|3087241_3088375_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930095.1|3088374_3091056_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930094.1|3091426_3092008_+	OmpA family protein	NA	NA	NA	NA	NA
WP_010930093.1|3092133_3092859_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930092.1|3092855_3093533_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930091.1|3093748_3094930_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930090.1|3095702_3095885_+	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_005012808.1|3095914_3096865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3096994_3097387_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3097663_3098575_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3098699_3099674_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3099670_3100621_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	3114128	3167646	4105309	holin,transposase	Bacillus_phage(33.33%)	44	NA	NA
WP_010930066.1|3114128_3115079_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3115191_3115443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3115948_3117067_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3117186_3117399_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3117558_3117780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|3117832_3118783_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3119959_3121330_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3121362_3122154_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3122166_3123222_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3123247_3124123_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3124228_3124477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3124511_3125966_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3125962_3126484_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3126512_3127865_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3128088_3130977_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3133121_3134423_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3134437_3135154_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3135435_3136116_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3136127_3136295_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3136403_3136550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3136643_3137303_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3137701_3139534_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3139530_3140481_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3141644_3143360_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3143370_3143862_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3143934_3144951_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3145118_3145898_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3145916_3146444_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3146737_3147007_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3147097_3149257_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3149377_3150097_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3150093_3151044_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813999.1|3151184_3152402_+	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_010930016.1|3152395_3153007_-	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813997.1|3153640_3154618_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813996.1|3154761_3155508_+	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_010930017.1|3155529_3155976_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_010930018.1|3156763_3158995_+|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_003813993.1|3159017_3159818_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813992.1|3160099_3161332_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813991.1|3161442_3162432_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|3162462_3163851_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813988.1|3165449_3166433_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_023994644.1|3166629_3167646_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	3190669	3239691	4105309	holin,transposase	Vibrio_phage(25.0%)	43	NA	NA
WP_005013747.1|3190669_3191620_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3191702_3193661_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3193688_3194390_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3194536_3195352_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3195348_3196164_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3196180_3196984_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3196967_3197402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3197398_3197833_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3197834_3198389_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3198406_3199357_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3199669_3200827_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3201015_3201375_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3201411_3201888_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3201962_3202586_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3202588_3203845_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3203890_3204385_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3204381_3205749_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3205764_3208092_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3208091_3209165_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3209186_3209675_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3209692_3210340_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3210336_3210645_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3210662_3212675_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3212671_3214174_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_019248505.1|3214184_3215669_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3215685_3216015_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_077069061.1|3216315_3218547_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3218758_3221029_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3221141_3221660_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3221669_3222446_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3222442_3224233_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3224292_3225273_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3225410_3226328_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3226456_3227317_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3227352_3230808_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3230837_3231521_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3231517_3232006_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_005012067.1|3232104_3233055_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041337087.1|3233153_3234104_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3234100_3235120_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3235129_3237838_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3237985_3238642_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3238740_3239691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	3291284	3334191	4105309	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3291284_3292235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3292336_3292765_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3292837_3295033_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3295254_3296205_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3296164_3296689_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3296820_3297792_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3297911_3300356_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3300371_3300962_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3301205_3302156_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3302313_3303579_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3303612_3304710_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3305364_3306315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3306315_3306885_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3306952_3307768_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3307934_3309554_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3309632_3310574_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3310573_3311458_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3311461_3313114_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3313153_3314551_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3314592_3315972_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3316011_3316230_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3316570_3317443_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3317602_3318553_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3319284_3319662_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3319646_3320348_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3320491_3321184_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3321183_3322287_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3322396_3324769_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3324765_3326325_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3326349_3327147_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3327178_3328324_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3328428_3329871_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3329873_3331103_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3333240_3334191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	3343483	3376166	4105309	tRNA,terminase,tail,transposase	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3343483_3345214_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3345279_3345852_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3345832_3346519_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3346874_3347546_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3347874_3348096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3348095_3348377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3348373_3348889_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3348888_3349440_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3349418_3349661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3349665_3350478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3350477_3350741_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3350781_3350979_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3350959_3351376_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3351380_3355337_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3355329_3355719_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3355715_3356249_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3356316_3356676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3356685_3359298_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3359323_3359614_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3359631_3359961_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3359970_3360489_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3360743_3361244_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3361251_3361674_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3361670_3362069_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3362065_3362461_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3362460_3362661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3362662_3363145_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3363207_3363459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3364133_3365084_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3365512_3366115_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3366237_3366480_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3366485_3367541_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3367569_3368988_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3368990_3370268_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3370254_3370740_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3371379_3372330_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3372586_3373276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3373268_3373520_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3374074_3374686_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3374757_3374964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|3375215_3376166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	3387385	3433704	4105309	tRNA,protease,transposase	Bacillus_phage(40.0%)	44	NA	NA
WP_010930800.1|3387385_3388336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3388412_3390233_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3390237_3391311_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3391433_3392402_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3392475_3393387_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3393405_3393978_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3394058_3394607_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3394606_3396196_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3396265_3396505_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3396545_3397571_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3397636_3398818_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3398914_3399367_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3399376_3400717_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3401033_3402071_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3402452_3402812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3402895_3403837_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3403911_3404862_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3405155_3406250_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3406331_3407213_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3407234_3408074_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3408149_3409667_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3409763_3410864_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3410880_3411303_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3411325_3411538_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3411584_3412505_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3412687_3413437_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3413439_3413769_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3413975_3415409_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3415420_3415804_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3415865_3416666_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3416764_3417715_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|3417770_3418583_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|3418741_3419590_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|3419790_3424185_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|3424278_3425256_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|3425642_3426221_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|3426368_3427418_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|3427458_3428193_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|3428987_3429569_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814158.1|3429565_3430459_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|3430592_3430994_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|3431011_3431614_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3431671_3432055_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3432753_3433704_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP012078	Bordetella pertussis strain H681 chromosome, complete genome	4105309	4027480	4080912	4105309	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4027480_4028431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4028600_4029827_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030026_4030893_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4030885_4031848_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4031948_4032899_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4032997_4033948_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034046_4034997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4034993_4036487_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4036483_4039591_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4039587_4042656_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4042652_4043903_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044083_4044845_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4044877_4045528_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4045530_4046370_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4046610_4047354_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4047436_4047784_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4047881_4048724_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4048768_4049656_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4049682_4049871_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4049968_4051426_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4051412_4052939_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4052957_4053425_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4053424_4054447_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4054567_4055287_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4055362_4056463_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4056464_4057655_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4057774_4058791_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059109_4059781_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4059777_4060686_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4060897_4061545_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4065396_4066473_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4066483_4067293_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4067382_4068156_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068338_4069289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069177_4070200_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070189_4071344_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4071383_4072796_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4072920_4073787_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4073788_4074613_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4074609_4075371_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4075451_4076138_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076311_4077319_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077315_4078095_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078152_4079415_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4079961_4080912_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
