The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	27282	70036	4112738	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010930208.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	77634	136108	4112738	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	164894	225405	4112738	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164894_165845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167288_168191_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168168_168798_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169080_170511_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170544_171174_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171222_172830_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172854_173538_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173619_174096_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174302_175253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176368_176896_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176987_177803_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177863_178598_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178635_180714_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180963_181236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181337_182423_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182426_184331_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184327_188002_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188062_188626_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188633_189056_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189083_189503_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189531_189978_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190104_190602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190756_193027_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193102_194308_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194406_195357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195459_196095_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196091_196985_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197379_198480_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198561_198936_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198995_201860_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202004_202745_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202814_204026_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204054_205023_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205636_206587_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206743_207067_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207171_208212_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|208217_208997_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209042_209339_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209364_209640_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209696_210341_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210340_211027_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|211225_212008_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212058_212784_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212815_214165_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214276_215209_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215666_218462_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_023994893.1|219055_221899_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222069_222789_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222827_223376_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223530_224430_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224454_225405_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	233337	286925	4112738	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233337_234288_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234374_235325_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235321_236272_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236370_237168_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238117_238528_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|239549_240293_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240336_241380_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241550_243653_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245063_246020_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246038_246530_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246526_247882_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247882_248581_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248577_249279_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249531_250581_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250686_251628_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251624_253514_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253600_254239_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|254381_255767_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255697_256234_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256385_257777_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257793_258774_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258909_259893_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259957_260857_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260963_262718_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262725_263850_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263863_264844_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265574_266525_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267084_267630_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|267755_269333_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269348_270503_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270516_270642_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270638_272390_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272386_274066_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274128_274677_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275819_276098_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277141_278092_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|278078_278294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278369_278531_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|279197_279647_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279656_280268_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|280426_281275_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281300_282683_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282747_283389_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283528_283987_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284011_284788_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284841_285978_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285974_286925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	390858	448367	4112738	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390858_391809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391945_392863_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392859_393108_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393104_394310_+	CoA transferase	NA	NA	NA	NA	NA
WP_077090949.1|394382_395378_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395400_396621_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396617_397262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398992_399802_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400106_401060_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401158_402142_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402068_402770_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402818_403589_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403585_404764_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404931_406638_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406634_407531_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407571_409161_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|409210_410203_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410271_410871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411331_412312_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412387_413338_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413426_414341_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414337_414997_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415086_416010_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416015_416471_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416467_417571_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734664.1|417526_417799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|417758_419378_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419374_420433_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420562_421057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421149_422127_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422322_423528_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423524_425036_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425051_426365_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426555_426735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427144_427879_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430323_431274_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431405_431804_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432214_432685_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432773_433118_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433217_434618_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436406_436925_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437035_437791_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437986_439219_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439211_439997_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440063_441035_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441045_442023_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442148_443321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|443347_444376_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444441_445635_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447416_448367_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	591470	652661	4112738	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|591470_592421_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|592896_593787_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593783_594605_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594804_595296_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595314_596388_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596434_597538_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597613_598234_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598254_598764_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598818_599070_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599133_600267_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600274_600661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|600657_603177_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603605_603944_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603940_604447_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604508_605309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605419_606361_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606454_607990_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609669_611520_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611523_612357_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612356_613298_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613549_614521_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614662_616951_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617257_618166_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618220_619186_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619260_620922_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620993_621704_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|621852_622803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623501_623885_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623942_624545_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624562_624964_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|625079_625991_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625987_626569_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627363_628098_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628138_629188_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629335_629914_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630300_631278_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631371_635766_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635966_636815_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636973_637786_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637841_638792_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638890_639691_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639752_640136_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|640147_641500_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|641787_642117_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642119_642869_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643051_643972_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644018_644231_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644253_644676_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|644692_645793_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645889_647407_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647482_648322_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|648343_649216_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649306_650401_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650694_651645_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651719_652661_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	657985	704176	4112738	tail,tRNA,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|657985_659011_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659051_659291_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659360_660950_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660949_661498_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661578_662151_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662169_663081_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663154_664123_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664245_665319_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665323_667144_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667220_668171_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668259_668595_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668728_669379_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669400_670819_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670888_671644_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671612_672371_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672381_673263_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673279_673987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673989_674748_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674957_676700_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676692_677217_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677256_678051_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678218_679292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679390_680341_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680592_680799_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680870_681482_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682036_682288_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|682280_682970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683226_684177_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684816_685302_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685288_686566_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686568_687987_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688015_689071_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689076_689319_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689441_690044_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690472_691423_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692097_692349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692411_692894_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|692907_693096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693095_693491_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693487_693886_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693882_694305_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694312_694813_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695067_695586_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695595_695925_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695942_696233_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696258_698871_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698880_699240_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699307_699841_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699837_700227_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700219_704176_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	710342	764272	4112738	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|710342_712073_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712125_712554_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712556_713237_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713236_713695_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|713731_714706_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|714722_716039_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716070_716568_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716654_717344_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717343_718393_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718389_719184_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719352_719703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719678_720236_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721365_722316_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724453_725683_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725685_727128_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727232_728378_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728409_729207_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729231_730791_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730787_733160_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733269_734373_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734372_735065_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735208_735910_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735894_736272_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737003_737954_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738113_738986_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739326_739545_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739584_740964_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741005_742403_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742442_744095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744098_744983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744982_745924_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|746002_747622_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747788_748604_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748671_749241_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749241_750192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750846_751944_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751977_753243_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753400_754351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754594_755185_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755200_757645_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757764_758736_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758867_759392_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759351_760302_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760523_762719_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|762791_763199_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|763321_764272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	886861	954836	4112738	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|886861_887878_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888074_889058_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890656_892045_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892075_893065_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893175_894408_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894689_895490_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895512_897744_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|898531_898978_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898999_899746_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899889_900867_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901500_902112_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902105_903323_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903463_904414_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|904410_905130_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|905250_907410_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|907500_907770_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|907858_908065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|908063_908591_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|908609_909389_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|909556_910573_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|910645_911137_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|911147_912863_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|914026_914977_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914973_916806_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917204_917864_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|918391_919072_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919353_920070_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920084_921386_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|923530_926419_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926642_927995_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928023_928545_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928541_929996_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930030_930279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930384_931260_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931285_932341_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932353_933145_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933177_934548_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935724_936675_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936727_936949_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937108_937321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937440_938559_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|938655_938871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|939064_939316_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939427_940378_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940374_940758_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940812_942627_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942776_943604_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943649_944630_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944626_944839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944835_946017_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946180_946915_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946916_949529_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949664_951578_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952193_952604_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952701_953787_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010929591.1|953885_954836_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	998365	1070882	4112738	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|998365_999316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999420_1000470_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000607_1001624_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003132_1003705_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003764_1004496_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006272_1009452_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009448_1010831_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010900_1011152_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011297_1011912_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1012098_1014159_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014288_1015140_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015136_1015763_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015759_1017514_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017806_1020512_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020524_1022186_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022198_1023989_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024210_1025386_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025428_1026379_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026477_1027218_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027412_1029449_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029466_1030477_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031817_1032591_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032587_1033778_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034738_1037087_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037241_1037883_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1039212_1039365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039396_1039945_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1039963_1040449_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040626_1041565_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041930_1042875_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044555_1045206_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045591_1046452_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047330_1048281_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048579_1049317_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049752_1050076_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050110_1050671_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050791_1051667_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052728_1053022_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055694_1057401_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058264_1059317_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059369_1059759_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059767_1060400_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1060499_1061516_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1062346_1063354_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1063350_1064994_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1064990_1065878_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1066018_1066492_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1066481_1067504_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1067500_1068928_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069865_1070882_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1074635	1135662	4112738	holin,tRNA,transposase	Catovirus(20.0%)	51	NA	NA
WP_010930155.1|1074635_1075772_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075768_1076842_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1076999_1078436_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079503_1080520_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019248433.1|1080852_1083600_+	pertactin autotransporter	NA	NA	NA	NA	NA
WP_010930160.1|1083666_1085088_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085351_1086068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086152_1086470_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086510_1086924_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086925_1087285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087327_1088872_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088955_1089786_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089820_1090975_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091017_1091890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092006_1094295_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095501_1095966_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095992_1096943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930167.1|1097310_1098087_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098131_1098989_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099010_1100027_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100161_1101202_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101396_1103478_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103713_1105207_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105437_1106232_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106452_1107811_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107807_1108650_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108668_1110555_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110496_1110748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110792_1111425_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111443_1112046_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112197_1113148_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113728_1114436_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114794_1115781_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115920_1116934_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116930_1117881_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812703.1|1117993_1118452_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118488_1119802_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119819_1120191_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120187_1121651_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121791_1122520_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122501_1125351_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125563_1126514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126681_1127506_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127505_1128384_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129288_1130404_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130432_1131227_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131223_1133089_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133167_1133800_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133796_1134099_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134141_1135662_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1153232	1218816	4112738	tRNA,transposase	Erysipelothrix_phage(33.33%)	52	NA	NA
WP_023853221.1|1153232_1155029_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155028_1155997_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156066_1156912_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156979_1157534_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157580_1158531_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158629_1159262_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159426_1161709_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161863_1164560_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164685_1165174_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167584_1170455_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170500_1171715_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171944_1173372_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173469_1174561_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174573_1175332_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175419_1176322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176318_1177269_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177398_1178382_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178436_1179159_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180637_1181993_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182073_1184449_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184613_1186689_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186750_1187545_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187652_1188615_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188602_1189358_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189465_1191103_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191170_1191908_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192010_1192586_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192758_1193295_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193327_1193642_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193657_1194503_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194541_1195921_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195998_1196880_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196978_1197929_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197925_1198336_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198443_1199298_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199290_1200253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200298_1201423_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201528_1202407_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202531_1203311_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203464_1204886_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205320_1207018_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207244_1208186_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208512_1209259_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209266_1210193_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210314_1211232_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211271_1212225_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212249_1212828_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214501_1215110_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215187_1215541_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215624_1216614_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_076879566.1|1216816_1217767_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853639.1|1217865_1218816_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1317952	1383432	4112738	transposase	Planktothrix_phage(33.33%)	55	NA	NA
WP_005012808.1|1317952_1318903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319671_1320310_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321199_1321646_+	glutamate racemase	NA	NA	NA	NA	NA
WP_010930284.1|1321727_1322429_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322429_1323197_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323193_1324432_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324431_1325358_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325460_1326576_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326591_1327542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327895_1328477_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328473_1329307_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329517_1330831_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331007_1331889_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331908_1332760_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332812_1333901_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334011_1335139_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335373_1335985_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010929584.1|1336083_1337034_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337255_1337633_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337780_1338278_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338274_1338802_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338935_1339751_+	exported protein	NA	NA	NA	NA	NA
WP_010930292.1|1339763_1340945_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340992_1341886_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342012_1342483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342608_1343436_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343464_1344241_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344237_1344513_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344527_1344992_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345003_1345705_-	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_003811310.1|1345814_1346315_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346397_1347576_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349203_1349539_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349726_1351175_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351232_1351577_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351683_1352223_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352315_1353266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1353364_1354315_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852768.1|1354413_1354821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1355053_1355485_-	BcpO-related WXXGXW repeat protein	NA	NA	NA	NA	NA
WP_010930300.1|1355666_1356071_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1357307_1357631_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1357633_1358521_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1358553_1358979_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1359050_1359404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1359643_1360150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1360188_1361520_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1361579_1362395_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_077090951.1|1362391_1363297_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1366359_1368903_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1370269_1372024_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1372020_1374141_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1374145_1376341_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1376337_1379679_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1382481_1383432_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1448021	1503509	4112738	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1448021_1448972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1450173_1450620_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1450612_1452088_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1452084_1452840_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1452832_1453843_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1453832_1455509_-	flagellar basal body M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1455821_1456154_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1456167_1456563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1456572_1456899_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA	NA
WP_019247563.1|1456895_1457222_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023994685.1|1457148_1458171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1458167_1458518_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1458565_1458994_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1459001_1460375_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1460515_1460893_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1461155_1462463_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1462523_1463354_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1463350_1463839_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1463880_1465401_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1465444_1465921_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1466724_1469322_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1469351_1470173_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1470899_1471649_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1471832_1472711_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1472808_1473525_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1473539_1474100_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1474266_1475031_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1475050_1475908_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1475904_1477104_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1477143_1478478_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1478530_1480867_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1480992_1481556_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1481564_1482656_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1482727_1483183_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1483183_1483978_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1483974_1485156_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1485142_1485748_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1485744_1486518_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1486529_1487357_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1487518_1489882_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1489949_1490669_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1490792_1491218_+	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1491252_1492203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1492320_1493247_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1493312_1494470_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1494450_1494918_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1495065_1496016_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1496032_1496467_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1496456_1496807_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1497003_1498158_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|1498154_1499327_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1499374_1500268_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1500313_1500751_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1500810_1501500_+	VIT family protein	NA	NA	NA	NA	NA
WP_010930363.1|1501509_1502460_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1502558_1503509_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1695486	1759064	4112738	protease,transposase	Klebsiella_phage(11.11%)	48	NA	NA
WP_005012808.1|1695486_1696437_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930866.1|1702915_1705663_+	autotransporter Vag8	NA	NA	NA	NA	NA
WP_010930865.1|1705683_1706307_-	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_003813199.1|1706318_1706789_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_003813196.1|1706800_1707187_-	ribosome silencing factor	NA	NA	NA	NA	NA
WP_010930864.1|1707248_1707842_-	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_010930863.1|1707832_1708744_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_023853662.1|1708759_1710070_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930861.1|1710167_1710899_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_023853666.1|1711053_1712574_+	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930859.1|1712634_1713990_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_076879554.1|1714024_1715350_-	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_010930857.1|1715531_1716464_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_010930856.1|1716474_1717968_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930855.1|1717964_1718888_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930854.1|1718890_1720153_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_047122810.1|1720172_1721186_-	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930852.1|1721258_1721549_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930851.1|1721578_1722853_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_005013747.1|1722995_1723946_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930850.1|1723942_1725580_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_003813165.1|1725584_1726424_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_023997180.1|1726420_1727428_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930848.1|1727544_1729119_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930847.1|1729538_1731083_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930846.1|1731187_1732255_+	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930845.1|1732273_1733860_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930844.1|1733856_1735047_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003813149.1|1736619_1737108_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813147.1|1737167_1738025_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010930843.1|1738087_1739038_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930842.1|1739100_1740090_+	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_003813142.1|1740164_1741046_-|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930841.1|1742103_1742955_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010930840.1|1742971_1743541_-	phosphohydrolase	NA	NA	NA	NA	NA
WP_010930839.1|1743571_1744435_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930838.1|1744594_1745671_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_029443740.1|1745735_1747433_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003820286.1|1747449_1748280_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_010930836.1|1748308_1749331_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012067.1|1749860_1750811_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|1750909_1751860_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852827.1|1751856_1753179_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_004568205.1|1753279_1753597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809610.1|1753730_1755044_+	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_019247142.1|1755074_1756712_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809615.1|1757335_1757812_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_010931070.1|1758113_1759064_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1798177	1846192	4112738	tRNA,transposase	Moraxella_phage(18.18%)	42	NA	NA
WP_010930522.1|1798177_1799128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930804.1|1799226_1801827_-	TRAP transporter fused permease subunit	NA	NA	NA	NA	NA
WP_003818658.1|1801933_1802938_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930803.1|1803046_1804387_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	22.8	8.8e-18
WP_003818661.1|1804427_1805456_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930802.1|1805651_1806197_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930801.1|1806193_1806754_+	diaminobutyrate acetyltransferase	NA	NA	NA	NA	NA
WP_010930048.1|1806852_1807803_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930523.1|1807840_1808428_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_003811007.1|1808445_1808829_-	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_003811011.1|1810188_1811481_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_010930524.1|1811615_1812656_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_010929632.1|1812753_1813770_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_023852762.1|1814037_1814673_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010930526.1|1814810_1815569_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_019247478.1|1815553_1816333_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_003811022.1|1816350_1817235_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019248494.1|1817231_1818011_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003816527.1|1818037_1818715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930529.1|1819003_1819756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816525.1|1819874_1821275_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_003816523.1|1821298_1821697_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003811035.1|1821872_1822073_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_010930530.1|1822211_1822940_+	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003816520.1|1823073_1824489_+	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_003816518.1|1824492_1825356_-	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_004568486.1|1825368_1826118_-	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_010930531.1|1826360_1828316_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_019247882.1|1828297_1828966_-	arylesterase	NA	NA	NA	NA	NA
WP_005012067.1|1829740_1830691_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1830789_1831740_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813572.1|1831888_1832227_-	BON domain-containing protein	NA	NA	NA	NA	NA
WP_003813570.1|1832284_1832446_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813568.1|1832477_1832678_-	CsbD family protein	NA	NA	NA	NA	NA
WP_010930533.1|1832943_1835517_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_019247811.1|1835587_1838137_-	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930535.1|1840687_1841176_+	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|1841267_1842419_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_004566336.1|1842472_1843294_+	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|1843332_1844562_+	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566334.1|1844690_1845131_+	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|1845241_1846192_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1849585	1912888	4112738	protease,tRNA,transposase	Lake_Baikal_phage(21.43%)	55	NA	NA
WP_010930542.1|1849585_1852447_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930543.1|1852436_1853402_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_076879626.1|1853461_1855456_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_005012067.1|1855554_1856505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1856603_1857554_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930545.1|1857550_1857925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812548.1|1858186_1859395_+	aminotransferase	NA	NA	NA	NA	NA
WP_003812546.1|1859391_1861692_+	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_010926400.1|1861744_1864357_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_033446179.1|1864716_1866624_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_019247938.1|1866638_1867535_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|1867541_1868681_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_003812536.1|1868680_1869502_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930549.1|1871072_1871402_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010930550.1|1871784_1873041_+	autotransporter Phg	NA	NA	NA	NA	NA
WP_003812526.1|1873115_1873397_+	membrane protein	NA	NA	NA	NA	NA
WP_003812524.1|1873438_1873759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930551.1|1874065_1874269_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812519.1|1874352_1874919_+	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930553.1|1875264_1875465_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_076879561.1|1875576_1876155_-	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930555.1|1876333_1877644_+	trigger factor	NA	NA	NA	NA	NA
WP_003812508.1|1877646_1878300_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930556.1|1878404_1879709_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_010930557.1|1879897_1882351_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_019247936.1|1882474_1883425_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930559.1|1883652_1884876_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930560.1|1884941_1885913_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930561.1|1885979_1886381_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930562.1|1886400_1887198_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003812491.1|1887194_1887626_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930563.1|1887622_1888780_+	thiolase	NA	NA	NA	NA	NA
WP_010930564.1|1888801_1889578_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_162494262.1|1891790_1892459_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003812478.1|1892451_1893093_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_019247935.1|1893127_1893859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247934.1|1893876_1894089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1894659_1895610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930566.1|1897167_1897818_-	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_019247244.1|1897946_1899149_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930568.1|1899226_1901263_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_010930569.1|1901515_1902007_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_003812463.1|1902222_1902735_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930570.1|1902752_1903964_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812460.1|1904001_1904412_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_003812458.1|1904413_1904737_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812456.1|1904739_1905252_+	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_010930571.1|1905381_1907244_+	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812453.1|1907253_1907595_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_003812452.1|1907594_1907789_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_010930572.1|1907913_1908807_+	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_005013747.1|1908803_1909754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1909878_1910688_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_005012067.1|1910888_1911839_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1911937_1912888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1940671	1981362	4112738	protease,tRNA,transposase	Klosneuvirus(25.0%)	37	NA	NA
WP_010930590.1|1940671_1943296_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1943282_1943537_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1943603_1944185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1944488_1944749_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1944914_1945538_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1945537_1946311_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1946307_1947516_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1947541_1948015_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1948088_1949039_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1949137_1950088_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1950186_1951536_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1952301_1953057_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1953149_1956032_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1956354_1956780_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1956807_1957956_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1957952_1958459_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1958474_1959761_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1959810_1961106_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1961107_1961746_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1961751_1962909_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1962935_1964291_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1964294_1965365_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1965503_1965740_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1965827_1966934_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1966899_1968204_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1968222_1969122_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930786.1|1969305_1970463_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_023852902.1|1970539_1971835_+	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_003810720.1|1971948_1972488_+	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_006218592.1|1972765_1972978_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_010930784.1|1972997_1975028_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_124740709.1|1975053_1975248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|1975713_1977996_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_003816708.1|1978405_1978705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047122784.1|1978989_1979403_+	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_005013747.1|1979362_1980313_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1980411_1981362_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	1992566	2041968	4112738	transposase	Klosneuvirus(16.67%)	45	NA	NA
WP_005012067.1|1992566_1993517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1993513_1994788_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1994891_1996085_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1996081_1996735_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1996731_1998168_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1998155_1998515_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1999329_1999470_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1999487_2000438_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|2001483_2003349_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|2003606_2005127_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|2005214_2005865_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|2006813_2008109_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|2008130_2009015_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|2009113_2009989_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|2009978_2010335_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|2010465_2011440_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2011569_2011749_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|2011846_2012371_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|2012381_2013218_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|2013330_2013702_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|2013698_2014250_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|2014265_2015957_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|2016005_2016686_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|2016933_2017398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2017567_2018497_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|2018509_2019157_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|2019230_2021048_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|2021131_2022082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2022734_2023685_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812199.1|2023703_2024051_-	GFA family protein	NA	NA	NA	NA	NA
WP_010930755.1|2024079_2025519_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_010930754.1|2025537_2025933_-	VOC family protein	NA	NA	NA	NA	NA
WP_003812191.1|2026107_2026716_+	peptidase S16	NA	NA	NA	NA	NA
WP_010930753.1|2026728_2027547_+	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_010930752.1|2027498_2028473_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812183.1|2028501_2029563_-	XdhC family protein	NA	NA	NA	NA	NA
WP_010930751.1|2029559_2031776_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_010930750.1|2031789_2032248_-	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_003812179.1|2032405_2032750_-	exported protein	NA	NA	NA	NA	NA
WP_010930749.1|2032906_2033812_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930748.1|2033898_2034912_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010930153.1|2036891_2037908_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_019247707.1|2038050_2039403_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_003812172.1|2039577_2039874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2041017_2041968_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2053464	2117833	4112738	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|2053464_2054415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|2054636_2055587_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|2055685_2056651_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|2056788_2057688_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|2060282_2061770_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|2061780_2062977_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|2063049_2064369_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|2064365_2065241_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|2065271_2066420_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|2066437_2066752_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_003816687.1|2066773_2067496_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|2067495_2068314_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|2068318_2068846_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|2068851_2070108_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|2070466_2071606_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|2071683_2072556_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|2073426_2074377_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|2074336_2074972_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|2075331_2076654_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|2076972_2077794_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2079218_2079791_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2079830_2081660_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2081622_2082681_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2082718_2083180_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2083264_2084011_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2085501_2088732_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2088798_2090130_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2090382_2090757_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2090859_2092038_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2092048_2092639_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2092749_2093556_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2093581_2094376_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2095376_2096351_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2096509_2097022_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2097178_2098150_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2099894_2100701_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2100697_2101999_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2101949_2102714_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2102827_2103598_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2103682_2104870_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2104942_2105317_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2105417_2106680_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2106676_2107534_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2107706_2108708_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2109159_2110110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2111673_2112825_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2113193_2113430_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2113493_2113661_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2113774_2115670_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2115833_2116784_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2116882_2117833_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2304301	2365649	4112738	tRNA,transposase	Yellowstone_lake_phycodnavirus(12.5%)	52	NA	NA
WP_005013747.1|2304301_2305252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811701.1|2305368_2306088_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930605.1|2306260_2307247_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010930604.1|2307247_2307730_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_003811706.1|2307733_2309017_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003811709.1|2309013_2309952_+	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_010930603.1|2309948_2311658_+	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_010930602.1|2311667_2312915_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_003811716.1|2314525_2315815_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_003811719.1|2316952_2317726_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	3.1e-31
WP_010930601.1|2318387_2319131_-	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930600.1|2319205_2319946_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930599.1|2320141_2320978_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930598.1|2321028_2321799_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930597.1|2321848_2322901_-	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_003811733.1|2322897_2323524_-	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930596.1|2323520_2324555_-	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_010930595.1|2324733_2325750_+	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_005012067.1|2325848_2326799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930797.1|2329539_2330829_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930798.1|2330947_2331385_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930799.1|2331428_2332637_-	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_003810867.1|2332783_2333248_+	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_014905945.1|2333271_2334222_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930521.1|2335206_2335980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930520.1|2335976_2336975_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930519.1|2337059_2337836_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.2	1.2e-30
WP_010930518.1|2337991_2339596_-	ABC-F family ATPase	NA	A0A1V0SKJ1	Klosneuvirus	28.9	1.2e-53
WP_003816541.1|2339976_2341101_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810992.1|2341227_2341851_+	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_010930517.1|2341847_2343749_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930516.1|2343797_2344592_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930515.1|2344604_2345606_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA	NA
WP_010930514.1|2345602_2346052_-|tRNA	tRNA adenosine(34) deaminase TadA	tRNA	S4VYT2	Pandoravirus	38.2	2.0e-06
WP_010930513.1|2346101_2346950_-	hydrolase	NA	NA	NA	NA	NA
WP_019247780.1|2347047_2347590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|2347633_2348584_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930511.1|2348739_2349066_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_033446177.1|2349062_2349344_-	K+/H+ antiporter subunit F	NA	NA	NA	NA	NA
WP_010930510.1|2349343_2349823_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA	NA
WP_004568496.1|2349819_2351448_-	monovalent cation/H+ antiporter subunit D	NA	NA	NA	NA	NA
WP_003810969.1|2351444_2351789_-	Na+/H+ antiporter subunit C	NA	NA	NA	NA	NA
WP_010930509.1|2351788_2354722_-	monovalent cation/H+ antiporter subunit A	NA	NA	NA	NA	NA
WP_010929588.1|2355880_2356831_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811452.1|2356929_2357226_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930508.1|2357332_2358250_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930507.1|2358254_2358968_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930506.1|2358981_2359953_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930505.1|2361702_2362053_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930504.1|2362056_2363244_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930503.1|2363682_2364405_+	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_005013747.1|2364698_2365649_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2386440	2457594	4112738	transposase	Tetraselmis_virus(10.0%)	54	NA	NA
WP_005012067.1|2386440_2387391_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852967.1|2387943_2389569_-	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_010930475.1|2389618_2390653_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_010930476.1|2390655_2392002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930477.1|2391998_2393513_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|2393503_2394514_-	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930479.1|2394987_2395929_-	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930480.1|2395937_2396906_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930481.1|2398445_2399414_+	transporter	NA	NA	NA	NA	NA
WP_010930482.1|2399591_2400581_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010926609.1|2400627_2401386_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930483.1|2401575_2402313_+	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_005012808.1|2402411_2403362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816696.1|2403546_2404329_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_003810743.1|2404322_2405024_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003810741.1|2405263_2405866_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|2407192_2408143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486074.1|2408139_2409696_-	LTA synthase family protein	NA	NA	NA	NA	NA
WP_010930486.1|2409688_2410462_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|2410520_2411471_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852812.1|2411552_2412728_-	capsular biosynthesis protein	NA	NA	NA	NA	NA
WP_010930473.1|2412741_2414799_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930472.1|2414795_2415821_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010930471.1|2415832_2417122_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930470.1|2417144_2418242_-	capsular polysaccharide export protein	NA	NA	NA	NA	NA
WP_003811224.1|2418238_2419129_-	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010930469.1|2419125_2421210_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_010930468.1|2421241_2422411_-	capsule polysaccharide transporter	NA	NA	NA	NA	NA
WP_014486073.1|2422452_2423193_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010930466.1|2423192_2423963_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930465.1|2424818_2425604_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	32.0	1.1e-12
WP_010930464.1|2425630_2427715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247170.1|2427882_2429838_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_003811209.1|2430161_2430662_-	DNA starvation/stationary phase protection protein	NA	W5S6G8	Pithovirus	35.5	6.4e-14
WP_010930461.1|2430760_2432287_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930460.1|2432424_2433312_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811203.1|2433326_2434280_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	26.5	7.2e-14
WP_033446218.1|2434331_2436422_-	ATP-dependent DNA helicase RecG	NA	NA	NA	NA	NA
WP_010930458.1|2436437_2436824_-	reactive intermediate/imine deaminase	NA	NA	NA	NA	NA
WP_010930457.1|2439517_2440321_-	2,5-didehydrogluconate reductase DkgB	NA	A0A2H4PQR8	Staphylococcus_phage	32.4	2.0e-33
WP_010930456.1|2441614_2442517_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811187.1|2442581_2443358_-	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_010930455.1|2443679_2444729_+	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930454.1|2444852_2446523_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_019248220.1|2446527_2447322_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.4	8.3e-16
WP_005012067.1|2447420_2448371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930453.1|2448390_2449296_-	pirin family protein	NA	NA	NA	NA	NA
WP_003811176.1|2449373_2450072_-	pirin family protein	NA	NA	NA	NA	NA
WP_010930452.1|2450231_2451176_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930451.1|2451185_2452673_-	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_003811167.1|2452672_2453740_-	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_003811164.1|2453803_2455216_-	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_010930450.1|2455401_2456622_-	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_005012808.1|2456643_2457594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2541794	2592966	4112738	tRNA,transposase	Salmonella_phage(20.0%)	47	NA	NA
WP_005012067.1|2541794_2542745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812577.1|2542843_2543614_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.5	8.3e-29
WP_010930397.1|2543610_2544282_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuD	NA	NA	NA	NA	NA
WP_003812581.1|2544278_2544920_-	ectoine/hydroxyectoine ABC transporter permease subunit EhuC	NA	NA	NA	NA	NA
WP_010930396.1|2544932_2545853_-	ectoine/hydroxyectoine ABC transporter substrate-binding protein EhuB	NA	NA	NA	NA	NA
WP_010930395.1|2546013_2547174_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930394.1|2547215_2548166_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_010930393.1|2548764_2548989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930392.1|2549153_2550848_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_003812598.1|2550969_2551239_-	HPr family phosphocarrier protein	NA	NA	NA	NA	NA
WP_003812601.1|2551354_2551753_-	PTS mannose transporter subunit IIA	NA	NA	NA	NA	NA
WP_010930391.1|2551763_2552720_-	glutathione synthase	NA	NA	NA	NA	NA
WP_033446215.1|2552856_2553402_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	29.9	9.1e-14
WP_003812608.1|2553422_2555372_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	36.0	4.1e-125
WP_019248759.1|2555759_2556536_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003812612.1|2556541_2556934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2557355_2558306_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|2558302_2559400_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_076879548.1|2559431_2560382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814009.1|2562163_2563405_-	MFS transporter	NA	NA	NA	NA	NA
WP_003814010.1|2563416_2564190_-	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_005012067.1|2564216_2565167_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814011.1|2565265_2566048_-	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003814012.1|2566136_2567363_-	transporter	NA	NA	NA	NA	NA
WP_003814013.1|2568088_2569474_+	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814014.1|2569492_2570098_+	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_010930939.1|2570094_2571951_+	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814016.1|2571947_2572748_+	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_005013753.1|2572762_2573956_+	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814017.1|2574023_2574998_+	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_010930940.1|2575120_2576344_+	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_010930941.1|2576454_2578659_+	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_003814020.1|2578953_2579613_+	NAAT family transporter	NA	NA	NA	NA	NA
WP_019247690.1|2579620_2579827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|2580165_2580921_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_003814023.1|2581191_2581707_+	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814024.1|2581979_2582297_+	virulence factor	NA	NA	NA	NA	NA
WP_005014990.1|2582484_2582721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930944.1|2583011_2584367_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_010930945.1|2584413_2585754_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930946.1|2585855_2586488_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930947.1|2586487_2588857_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930948.1|2588889_2589849_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010929073.1|2589835_2590522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015014.1|2590518_2590851_+	multidrug transporter	NA	NA	NA	NA	NA
WP_005012067.1|2590966_2591917_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|2592015_2592966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2691261	2731929	4112738	tRNA,transposase	Salmonella_phage(33.33%)	43	NA	NA
WP_010929591.1|2691261_2692212_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2692322_2692505_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2692604_2693201_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2693384_2694476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2694975_2695386_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852697.1|2695444_2695774_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.7e-13
WP_010931007.1|2695791_2698209_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2698221_2699244_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2699318_2699678_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2699693_2699891_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2700226_2701177_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2701371_2701821_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2701817_2702768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2702878_2704327_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853496.1|2704441_2704687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2704826_2705777_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2706021_2706735_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2706857_2707085_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2707379_2708018_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2708126_2709161_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2709157_2710108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2710523_2711048_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2711051_2711321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2711519_2712581_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2712664_2714299_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2714300_2715104_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2715132_2716092_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2716095_2717610_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2717646_2718651_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_033456131.1|2718658_2718892_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931018.1|2719081_2719552_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2719587_2720199_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2720229_2720853_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2720933_2722466_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_023853282.1|2722500_2723718_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2723785_2724817_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2724813_2725983_-	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931025.1|2725976_2726657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931026.1|2726818_2727661_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2727823_2728795_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2728966_2729845_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2729867_2730938_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2730978_2731929_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2736040	2818175	4112738	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2736040_2736991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247978.1|2737740_2738154_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2738167_2739403_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2739410_2740205_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2740201_2741005_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2741031_2742009_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2742037_2743609_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2743619_2744441_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2746165_2747596_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2747608_2748298_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077090953.1|2748393_2749734_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2749735_2749993_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2750346_2751939_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2752035_2753496_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2753718_2754330_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2758076_2759027_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2759442_2762079_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2762075_2763200_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2763196_2764579_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2764714_2765182_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931045.1|2766043_2767246_+	lipoprotein	NA	NA	NA	NA	NA
WP_010931046.1|2767247_2768978_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2769095_2769404_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2769416_2770229_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_023995127.1|2771109_2773275_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	1.9e-14
WP_010931049.1|2773400_2774189_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2774228_2775833_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2775913_2776654_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2776661_2777156_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2777528_2778548_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2778544_2779927_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2779959_2780820_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2781823_2782705_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2782763_2783201_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2783291_2784263_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2784301_2785246_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2785341_2786151_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2786227_2786602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931060.1|2786708_2787401_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2787393_2787810_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2787920_2788553_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2788581_2789025_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2789046_2790138_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931063.1|2790192_2790993_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2791128_2791749_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931065.1|2791888_2792362_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2793501_2794452_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2794448_2802110_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2802350_2806397_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2806709_2807291_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2807287_2808586_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2808665_2809694_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_005013747.1|2809954_2810905_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2810901_2811852_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2812168_2812774_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2812827_2814141_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2814215_2814686_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2814685_2815474_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2815484_2817137_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2817224_2818175_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2842100	2890858	4112738	transposase	Pelagibacter_phage(25.0%)	41	NA	NA
WP_005012067.1|2842100_2843051_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2843185_2844292_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2844302_2845400_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2845544_2846750_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2846756_2847278_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2847274_2847757_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2847762_2848014_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2847994_2848480_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2848615_2852077_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2852094_2852979_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2852988_2853420_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2853666_2854170_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2854247_2855648_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2855722_2856598_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2856594_2857602_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2858069_2858375_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2858465_2859056_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2859246_2860263_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2860454_2862791_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2862873_2863308_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2863406_2864357_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|2864455_2865406_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2865504_2866455_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2866451_2867246_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2867277_2867982_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2868056_2868857_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2868853_2869261_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2869257_2869899_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2869891_2871892_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2873152_2874484_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2874480_2875431_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2877137_2877404_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2878111_2878450_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2883003_2883606_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2883702_2884992_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2885049_2885781_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2885777_2886581_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2886577_2887666_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2887662_2888592_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2888740_2889886_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2889907_2890858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2898855	2962603	4112738	protease,transposase	uncultured_Mediterranean_phage(22.22%)	55	NA	NA
WP_010931114.1|2898855_2901171_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2901226_2903395_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2903391_2908572_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2908670_2908985_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2909212_2909458_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2909552_2910071_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2910170_2911376_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2911491_2912889_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2913005_2913584_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2913656_2915048_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2915215_2916166_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2916446_2917067_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2917063_2917477_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2917473_2918517_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2918572_2918761_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2918770_2919535_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2919625_2920282_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2920373_2921132_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2921157_2922759_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2922959_2923964_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2924064_2924328_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2924445_2925222_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2925812_2926763_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2929146_2930259_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2930315_2931266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813070.1|2931474_2931696_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2931909_2933316_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2933312_2934617_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2934613_2935801_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2936017_2936470_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2936472_2936937_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2937016_2938696_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2938800_2939778_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2939857_2940826_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2940846_2942220_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2942216_2943053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2943169_2943625_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2943640_2943913_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2944005_2944329_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2944376_2944757_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2944976_2945774_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2945930_2947793_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2947842_2948754_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2948758_2949025_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_033446289.1|2949111_2949942_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2950116_2951082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2951252_2952263_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2952410_2953562_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2954704_2956177_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2956187_2956598_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2956661_2957708_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2957814_2958693_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2958706_2959903_-	amidohydrolase	NA	NA	NA	NA	NA
WP_010931141.1|2959964_2961656_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.4e-33
WP_005012067.1|2961652_2962603_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	2971362	3030542	4112738	transposase	Bacillus_virus(28.57%)	56	NA	NA
WP_010930176.1|2971362_2972313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2972393_2973542_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2973598_2974549_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2974647_2974953_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2974981_2975416_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2975417_2976662_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2976658_2977369_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2977383_2978295_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2978657_2979062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2979058_2979517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2979523_2980432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2980428_2981295_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2981281_2982109_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2982119_2983247_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2984324_2985563_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2985604_2986867_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2986873_2987626_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2987677_2987863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2988138_2988603_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2988634_2989294_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2989438_2991547_+	AsmA family protein	NA	NA	NA	NA	NA
WP_076879634.1|2991543_2992494_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2992597_2993218_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2993321_2994062_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2995196_2996321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2996366_2996735_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996976_2997927_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2998962_2999505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2999890_3000841_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|3000837_3001746_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|3001872_3002709_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3003221_3004331_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3004392_3005343_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3005535_3006318_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247888.1|3006331_3007096_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.5	3.1e-12
WP_010931161.1|3007108_3008455_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3008480_3009410_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3009525_3010431_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3010448_3011648_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010931164.1|3011720_3012413_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931165.1|3012461_3014888_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3014932_3015883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809026.1|3016099_3016468_-	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_003809025.1|3016754_3017681_+	VOC family protein	NA	NA	NA	NA	NA
WP_010931167.1|3017724_3018735_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_010931168.1|3018731_3019166_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931169.1|3020291_3021080_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931170.1|3021089_3021872_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931171.1|3021875_3022967_-	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931172.1|3023072_3024548_+	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931173.1|3024689_3025238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809010.1|3025253_3025715_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931174.1|3025815_3026805_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931175.1|3027103_3027805_+	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931176.1|3027843_3029217_-	amidase	NA	NA	NA	NA	NA
WP_023997744.1|3029255_3030542_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	3127926	3191761	4112738	protease,tRNA,transposase	Pseudomonas_phage(30.0%)	55	NA	NA
WP_005015810.1|3127926_3128877_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122802.1|3129022_3130147_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	33.3	3.8e-38
WP_023853315.1|3130352_3130916_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_003814871.1|3131910_3132393_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003814873.1|3132550_3133798_-	serine hydroxymethyltransferase	NA	A0A219YCZ0	Aeromonas_phage	52.7	1.1e-99
WP_003820605.1|3134018_3134675_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_003814877.1|3134710_3135940_-|tRNA	tyrosine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_005012067.1|3136207_3137158_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931221.1|3137249_3138665_+	M23 family metallopeptidase	NA	A8ATH6	Listeria_phage	46.9	1.9e-18
WP_010931222.1|3138670_3139807_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA	NA
WP_003814883.1|3139876_3140248_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	56.9	4.7e-30
WP_010931223.1|3140335_3141082_-	membrane protein	NA	NA	NA	NA	NA
WP_003820599.1|3141118_3142183_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA	NA
WP_010931224.1|3142371_3142764_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_010927106.1|3142773_3143202_-	50S ribosomal protein L13	NA	NA	NA	NA	NA
WP_004567739.1|3143497_3144595_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004567741.1|3144936_3146301_-|protease	metalloprotease PmbA	protease	NA	NA	NA	NA
WP_023853313.1|3146359_3146911_+	ribosome-associated protein	NA	NA	NA	NA	NA
WP_010931226.1|3146924_3147599_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931227.1|3148855_3149665_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.9	2.6e-33
WP_010931228.1|3149667_3150504_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003820594.1|3150518_3151211_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_003820593.1|3151222_3151612_-	VOC family protein	NA	NA	NA	NA	NA
WP_003820592.1|3151717_3153106_-	ATP-dependent RNA helicase DbpA	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	33.5	4.6e-54
WP_010931229.1|3153222_3154719_-	membrane protein	NA	NA	NA	NA	NA
WP_010931230.1|3155015_3155690_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3155788_3156739_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931231.1|3156735_3159195_-	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_033446281.1|3159330_3160737_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010931233.1|3160740_3161928_-	MFS transporter	NA	NA	NA	NA	NA
WP_023998238.1|3161996_3162506_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814925.1|3162707_3163160_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247415.1|3163721_3166784_+	indolepyruvate ferredoxin oxidoreductase family protein	NA	NA	NA	NA	NA
WP_010931235.1|3167089_3170017_+	ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4P767	Pseudomonas_phage	43.9	3.4e-171
WP_003814929.1|3170038_3171235_+	ribonucleotide-diphosphate reductase subunit beta	NA	A0A2H4P762	Pseudomonas_phage	28.9	1.0e-33
WP_010931236.1|3171552_3172080_+	histone H1-like DNA-binding protein	NA	NA	NA	NA	NA
WP_023853329.1|3172233_3172794_+	YggT family protein	NA	NA	NA	NA	NA
WP_023853325.1|3172801_3174256_-	D-alanine--poly(phosphoribitol) ligase	NA	A0A2K9L3I8	Tupanvirus	25.1	7.3e-26
WP_010931239.1|3174275_3175403_-	membrane-bound O-acyltransferase	NA	A0A125RNP0	Pseudomonas_phage	30.8	3.7e-25
WP_019248818.1|3175532_3176708_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003814943.1|3176685_3176925_-	acyl carrier protein	NA	NA	NA	NA	NA
WP_010931240.1|3177205_3177709_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010931241.1|3177881_3178823_-	carbohydrate kinase family protein	NA	NA	NA	NA	NA
WP_010931242.1|3178834_3179932_-	DUF3426 domain-containing protein	NA	NA	NA	NA	NA
WP_003814951.1|3180897_3182244_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003814952.1|3182253_3182703_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003814953.1|3182792_3183227_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_023853327.1|3183305_3183854_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_003814955.1|3183936_3185307_+	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010931244.1|3185317_3185911_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_014486102.1|3185982_3187866_+	RNB domain-containing ribonuclease	NA	NA	NA	NA	NA
WP_010931246.1|3187903_3188803_+	TonB family protein	NA	NA	NA	NA	NA
WP_010931247.1|3188799_3189663_+	shikimate dehydrogenase	NA	NA	NA	NA	NA
WP_010929853.1|3189761_3190712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3190810_3191761_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	3239905	3255142	4112738	protease,transposase	Erwinia_phage(100.0%)	15	NA	NA
WP_005012808.1|3239905_3240856_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814611.1|3241300_3241612_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003820745.1|3241611_3242142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3242304_3243255_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3243353_3244304_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820744.1|3244593_3245058_+	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA	NA
WP_010931270.1|3245072_3246578_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA	NA
WP_010931271.1|3246831_3248439_+	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814620.1|3248494_3249400_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_005013747.1|3249840_3250791_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3250889_3251840_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853416.1|3251921_3252503_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA	NA
WP_003807161.1|3252927_3253233_+	copper-binding protein	NA	NA	NA	NA	NA
WP_003807162.1|3253246_3254581_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A191ZC11	Erwinia_phage	29.6	3.5e-43
WP_010931291.1|3254602_3255142_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
>prophage 32
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	3273565	3338449	4112738	protease,transposase,tRNA,integrase,holin	Tupanvirus(12.5%)	49	3266959:3266977	3339717:3339735
3266959:3266977	attL	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
WP_010931277.1|3273565_3273901_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003807199.1|3273900_3274743_+	methylenetetrahydrofolate reductase [NAD(P)H]	NA	NA	NA	NA	NA
WP_005013747.1|3274841_3275792_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818443.1|3275856_3276828_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003818444.1|3276891_3277911_-	histone deacetylase family protein	NA	A0A2K9L473	Tupanvirus	31.7	3.4e-22
WP_003807204.1|3277912_3279286_-	MHS family MFS transporter	NA	NA	NA	NA	NA
WP_010931276.1|3279563_3280244_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_010931275.1|3280319_3282383_+	lytic transglycosylase domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	36.6	5.3e-14
WP_010931274.1|3282379_3283474_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	A0A0F6YPT7	Sinorhizobium_phage	50.5	2.4e-50
WP_004566001.1|3283488_3284748_-	SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853440.1|3284767_3286456_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.9	1.6e-48
WP_003818450.1|3286730_3287483_-	uracil-DNA glycosylase	NA	A0A1Y0B680	Bovine_alphaherpesvirus	47.5	2.5e-46
WP_005012808.1|3287621_3288572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443788.1|3288884_3290363_+	phospholipase D family protein	NA	NA	NA	NA	NA
WP_010931293.1|3290369_3291479_-	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.5e-23
WP_003808339.1|3291490_3292171_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003808340.1|3292192_3292948_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925959.1|3293083_3293968_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931294.1|3294055_3294637_+	CGNR zinc finger domain-containing protein	NA	NA	NA	NA	NA
WP_004566249.1|3294897_3295197_-	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_010931296.1|3295348_3295828_-	membrane protein	NA	NA	NA	NA	NA
WP_023853362.1|3296547_3297984_-	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003808356.1|3297980_3298484_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3298499_3299450_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814148.1|3299977_3300751_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814146.1|3300883_3301894_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931298.1|3302045_3303701_-	gamma-glutamyltransferase family protein	NA	NA	NA	NA	NA
WP_003814142.1|3303755_3304097_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931299.1|3304110_3305550_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814139.1|3305682_3306498_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3306691_3307642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443749.1|3309029_3309977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905961.1|3310203_3310944_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3311029_3311980_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905963.1|3313421_3314993_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247179.1|3315325_3317179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247178.1|3317223_3319788_+	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3320206_3321157_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|3324022_3324517_-	DUF4276 family protein	NA	NA	NA	NA	NA
WP_010931070.1|3324533_3325484_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879586.1|3325470_3325671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931301.1|3325667_3326879_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931302.1|3326894_3329846_-	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_019247951.1|3329847_3332604_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931304.1|3333114_3334161_-	Fic family protein	NA	NA	NA	NA	NA
WP_010931305.1|3334502_3335630_-|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931306.1|3335909_3337001_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931307.1|3337073_3337856_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931308.1|3337852_3338449_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
3339717:3339735	attR	GGCCAGCGCGCGGGCGCGC	NA	NA	NA	NA
>prophage 33
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	3387387	3441128	4112738	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3387387_3388338_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3388742_3389387_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3389411_3389996_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3390096_3390714_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3390716_3392432_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3392428_3392737_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3392753_3393371_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3393415_3393718_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3393818_3394673_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3394860_3395085_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3395254_3395527_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3395944_3396352_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3396721_3397516_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3397616_3398852_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3398920_3399937_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3399948_3401325_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3401321_3402518_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3402514_3404053_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3404049_3405309_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3407249_3408200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3408966_3410061_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3410053_3411388_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3411341_3412025_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3412050_3413214_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_004566224.1|3413210_3414212_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3414211_3415084_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3415080_3415830_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3415826_3416618_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3416614_3417754_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3418029_3418815_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3418848_3419631_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3419634_3420024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3421163_3422027_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3422062_3423151_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3423147_3424098_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3424451_3427430_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3428356_3429235_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3431183_3432134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3432130_3432598_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3432640_3433411_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3433431_3434232_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3434242_3435652_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3435746_3436532_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3436771_3437788_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3437895_3438288_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3438425_3439106_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3439110_3440082_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3440177_3441128_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 34
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	3447283	3506583	4112738	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3447283_3449047_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3449158_3450037_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3450149_3450965_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3450968_3451220_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3451304_3452321_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3452651_3452873_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3455233_3456151_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3456648_3457857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3457936_3459508_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3459625_3460561_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3460749_3461694_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3462261_3467979_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3467984_3469112_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3469167_3469794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3470065_3471082_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3471177_3471888_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3471884_3472874_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3472969_3474601_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3474603_3475341_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3475496_3476369_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3476718_3477858_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3477854_3478514_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3478585_3479218_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3479247_3479766_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3479776_3480886_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3480932_3481787_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3481788_3482691_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3483913_3484864_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3486620_3487610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3487785_3488574_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3488570_3489602_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3489620_3490184_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3490239_3491760_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3492023_3492728_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3492735_3493464_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3493578_3493953_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3493995_3495285_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3495281_3496451_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3496447_3497287_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3497346_3498282_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3498294_3499245_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3499343_3500306_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3500337_3500697_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3500821_3501724_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3501725_3503498_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3503532_3504309_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3505632_3506583_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 35
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	3521521	3579594	4112738	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3521521_3522472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3522600_3523734_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3523777_3524683_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3524685_3526386_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3526382_3527303_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3527310_3528288_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3528346_3529381_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3531355_3531592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3531718_3532582_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3532670_3533492_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3533571_3534309_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3534305_3535298_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3535450_3536074_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3536118_3537267_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3539590_3540541_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3540881_3541832_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3541930_3542881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3543177_3543675_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3543717_3545493_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3545500_3546367_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3546373_3547108_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3548277_3549072_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3549361_3549952_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3549985_3551314_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3551388_3552534_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3552645_3553644_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3553606_3554041_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3555557_3556442_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3556438_3557644_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3557640_3558501_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3558613_3560404_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3560444_3561089_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3561110_3561419_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3561584_3562871_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3564304_3565255_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3567206_3568421_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3568526_3569516_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3569512_3570121_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3570133_3570763_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3570759_3571380_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3571411_3572203_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3573054_3573510_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3573528_3574455_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3574508_3575795_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3576725_3577598_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3577594_3578545_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3578643_3579594_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 37
NZ_CP011207	Bordetella pertussis strain I944 chromosome, complete genome	4112738	4011806	4076718	4112738	transposase	Planktothrix_phage(40.0%)	59	NA	NA
WP_039249574.1|4011806_4012292_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4012380_4012518_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4012510_4013491_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4013757_4014567_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4014606_4015287_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4015280_4015739_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4015750_4016113_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4016195_4016879_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4016934_4017243_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4017261_4017576_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4017572_4020047_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4020054_4021446_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4021442_4021628_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4021606_4022308_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4022304_4023126_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4023106_4024231_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4024223_4025243_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4025448_4026339_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4026583_4027375_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4027457_4027832_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4027809_4029219_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4029211_4030594_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4030928_4032533_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4032610_4033582_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4033592_4034519_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4034909_4035860_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4036029_4037256_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4037455_4038322_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4038314_4039277_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4039377_4040328_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4040426_4041377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4041475_4042426_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4042422_4043916_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4043912_4047020_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4047016_4050085_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4050081_4051332_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4051512_4052265_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4052306_4052951_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4052959_4053940_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4054039_4054783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4054865_4055213_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4055310_4056153_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4056197_4057085_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4057111_4057300_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4057397_4058855_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4058841_4060368_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4060386_4060854_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4060853_4061876_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4061996_4062737_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4062791_4063892_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4063893_4065084_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4065203_4066220_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4066538_4067210_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4067206_4068115_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4068326_4068974_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4072834_4073902_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4073912_4074722_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4074811_4075585_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4075767_4076718_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
