The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	27282	70036	4106397	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	77634	136108	4106397	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	164892	225403	4106397	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	233335	287972	4106397	protease,tRNA,transposase	Bacillus_phage(25.0%)	49	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929591.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|266621_267572_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268131_268677_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|268760_270380_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270395_271550_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271563_271689_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271685_273437_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273433_275113_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275175_275724_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276866_277145_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278188_279139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|279156_279303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279416_279578_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|279585_279726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|280244_280694_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280703_281315_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|281473_282328_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282347_283730_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283794_284436_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284575_285034_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285058_285835_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285888_287025_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|287021_287972_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	391905	449414	4106397	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391905_392856_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392992_393910_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393906_394155_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394151_395357_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395429_396425_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396447_397668_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397664_398309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400039_400849_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401153_402107_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402205_403189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403115_403817_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403865_404636_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404632_405811_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405978_407685_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407681_408578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408618_410208_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|410257_411250_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411318_411918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412378_413359_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413434_414385_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414473_415388_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415384_416044_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416133_417057_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417062_417518_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417514_418618_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418576_418846_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|418805_420425_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420421_421480_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421609_422104_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422196_423174_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423369_424575_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424571_426083_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426098_427412_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427602_427782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428191_428926_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431370_432321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432452_432851_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433261_433732_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433820_434165_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434264_435665_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437453_437972_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438082_438838_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439033_440266_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440258_441044_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441110_442082_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442092_443070_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443195_444368_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|444394_445423_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445488_446682_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448463_449414_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	591468	652659	4106397	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|591468_592419_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|592915_593785_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|593781_594603_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|594802_595294_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|595312_596386_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|596432_597536_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|597611_598232_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|598252_598762_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|598816_599068_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|599131_600265_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|600272_600659_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|600655_603175_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|603603_603942_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|603938_604445_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|604506_605307_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|605417_606359_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|606452_607988_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|609667_611518_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|611521_612355_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|612354_613296_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|613547_614519_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|614660_616949_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|617255_618164_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|618218_619184_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931484.1|619258_620920_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|620991_621702_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|621668_621833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|621850_622801_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|623499_623883_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|623940_624543_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|624560_624962_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|625095_625989_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|625985_626567_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|627361_628096_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|628136_629186_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|629333_629912_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|630298_631276_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|631369_635764_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|635964_636813_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|636971_637784_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|637839_638790_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|638888_639689_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|639750_640134_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|640145_641579_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|641785_642115_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|642117_642867_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|643049_643970_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|644016_644229_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|644251_644674_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|644690_645791_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|645887_647405_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|647480_648320_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|648341_649223_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|649304_650399_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|650692_651643_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|651717_652659_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	657983	704174	4106397	tail,terminase,tRNA,transposase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|657983_659009_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|659049_659289_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|659358_660948_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|660947_661496_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|661576_662149_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|662167_663079_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|663152_664121_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|664243_665317_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|665321_667142_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|667218_668169_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|668257_668593_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|668726_669377_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|669398_670817_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|670886_671642_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|671610_672369_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|672379_673261_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|673277_673985_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|673987_674746_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|674955_676698_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|676690_677215_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|677254_678049_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|678216_679290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|679388_680339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|680590_680797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|680868_681480_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|682034_682286_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|682278_682968_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|682985_683207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|683224_684175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|684814_685300_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|685286_686564_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|686566_687985_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|688013_689069_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|689074_689317_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|689439_690042_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|690470_691421_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|692095_692347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|692409_692892_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|692893_693094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|693093_693489_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|693485_693884_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|693880_694303_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|694310_694811_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|695065_695584_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|695593_695923_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|695940_696231_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|696256_698869_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|698878_699238_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|699305_699839_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|699835_700225_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|700217_704174_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	710340	764269	4106397	tRNA,transposase	Planktothrix_phage(50.0%)	45	NA	NA
WP_003814636.1|710340_712071_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|712123_712552_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|712554_713235_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|713234_713693_+	protein TolR	NA	NA	NA	NA	NA
WP_010931417.1|714719_716036_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|716067_716565_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|716651_717341_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|717340_718390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|718386_719181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|719349_719700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|719675_720233_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|721362_722313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|724450_725680_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|725682_727125_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|727229_728375_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|728406_729204_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|729228_730788_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|730784_733157_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|733266_734370_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|734369_735062_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|735205_735907_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|735891_736269_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|737000_737951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|738110_738983_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|739323_739542_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|739581_740961_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|741002_742400_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|742439_744092_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|744095_744980_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|744979_745921_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|745999_747619_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|747785_748601_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|748668_749238_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|749238_750189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|750843_751941_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|751974_753240_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|753397_754348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|754591_755182_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|755197_757642_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|757761_758733_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|758864_759389_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|759348_760299_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|760520_762716_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|762788_763217_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|763318_764269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	855147	904411	4106397	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|855147_856098_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|856115_856670_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|856671_857106_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|857102_857537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|857520_858324_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|858340_859156_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|859152_859968_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|860114_860816_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|860843_862802_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|862884_863835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|864055_864724_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|864847_865954_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|865966_869080_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|869076_870570_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|870584_871256_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|871299_871794_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|871934_872582_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|872685_874734_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|874730_876743_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|876768_878103_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|878211_879204_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|879270_881355_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|881379_882351_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|882479_883511_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|883514_884666_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|884836_885760_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|885837_886662_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|886858_887875_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|888071_889055_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|890653_892042_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|892072_893062_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|893172_894405_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|894686_895487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|895509_897741_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|898528_898975_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|898996_899743_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|899886_900864_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|901497_902109_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|902102_903320_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|903460_904411_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	914023	978963	4106397	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|914023_914974_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|914970_916803_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|917201_917861_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|917954_918101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|918209_918377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|918388_919069_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|919350_920067_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|920081_921383_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|923527_926416_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|926639_927992_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|928020_928542_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|928538_929993_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|930027_930276_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|930381_931257_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|931282_932338_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|932350_933142_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|933174_934545_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|935721_936672_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|936724_936946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|937105_937318_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|937437_938556_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|939061_939313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|939425_940376_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|940372_940756_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|940810_942625_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|942774_943602_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|943647_944628_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|944624_944837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|944833_946015_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|946178_946913_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|946914_949527_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|949662_951576_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|952191_952602_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|952699_953785_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|953883_954834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|954830_955805_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|955929_956841_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|957117_957510_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|957639_958590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|958619_958802_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|959574_960756_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|960971_961649_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|961645_962371_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|962496_963078_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|963448_966130_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|966129_967263_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|967255_968341_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|968427_969327_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|969323_970652_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|970666_971338_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|971525_973241_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|973242_973602_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|973793_974108_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|974150_975371_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|975367_976309_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|976305_977295_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|977329_977914_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|978012_978963_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	998368	1061519	4106397	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|998368_999319_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|999423_1000473_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|1000610_1001627_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1003135_1003708_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1003767_1004499_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1004550_1005468_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1006275_1009455_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1009451_1010834_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1010903_1011155_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1011300_1011915_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1012101_1014216_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1014291_1015143_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1015139_1015766_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1015762_1017517_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1017809_1020515_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1020527_1022189_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1022201_1023992_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1024213_1025389_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1025431_1026382_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1026480_1027221_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1027415_1029452_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1029469_1030480_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1030597_1031791_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1031820_1032594_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1032590_1033781_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1033806_1034745_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1034741_1037090_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1037244_1037886_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1037989_1039123_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1039215_1039368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1039399_1039948_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1039966_1040452_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1040629_1041568_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1041570_1041888_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1041933_1042878_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1044558_1045209_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1045262_1045598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1045594_1046455_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1046471_1046753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1046826_1047090_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1047333_1048284_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1048582_1049320_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1049755_1050079_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1050113_1050674_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1050794_1051670_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1051682_1052630_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1052731_1053025_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1053051_1055109_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1055123_1055624_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1055697_1057404_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1058267_1059320_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1059372_1059762_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1059770_1060403_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_023853536.1|1060502_1061519_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	1067503	1126517	4106397	holin,protease,tRNA,transposase	uncultured_Mediterranean_phage(37.5%)	49	NA	NA
WP_015041211.1|1067503_1068931_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1069868_1070885_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1071217_1072153_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1072202_1074083_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1074149_1074494_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1074638_1075775_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1075771_1076845_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1077002_1078439_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1078529_1079171_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1079506_1080523_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083669_1085091_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085354_1086071_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086155_1086473_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086513_1086927_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086928_1087288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087330_1088875_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088958_1089789_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089823_1090978_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091020_1091893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092009_1094298_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095504_1095969_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095995_1096946_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096963_1097101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097313_1098090_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098134_1098992_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099013_1100030_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100164_1101205_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101399_1103481_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103716_1105210_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105440_1106235_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106455_1107814_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107810_1108653_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108671_1110558_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110499_1110751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110795_1111428_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111446_1112049_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112200_1113151_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113731_1114439_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114797_1115784_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115923_1116937_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116933_1117884_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117901_1118042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117996_1118455_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118491_1119805_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119822_1120194_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120190_1121654_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121794_1122523_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122504_1125354_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125566_1126517_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	1317954	1386441	4106397	transposase	Planktothrix_phage(33.33%)	58	NA	NA
WP_005012808.1|1317954_1318905_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930283.1|1319673_1320312_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_019247793.1|1321201_1321648_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930284.1|1321729_1322431_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_003811277.1|1322431_1323199_-	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930285.1|1323195_1324434_-	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811272.1|1324433_1325360_-	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930286.1|1325462_1326578_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005015810.1|1326593_1327544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930287.1|1327897_1328479_-	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_003811267.1|1328475_1329309_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930288.1|1329519_1330833_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811262.1|1331009_1331891_+	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_003811259.1|1331910_1332762_+	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_010930289.1|1332814_1333903_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_010930290.1|1334013_1335141_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811244.1|1335375_1335987_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_005012808.1|1336085_1337036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811293.1|1337257_1337635_-	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_003811295.1|1337782_1338280_+	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_010930291.1|1338276_1338804_+	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811298.1|1338937_1339753_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930292.1|1339765_1340947_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811301.1|1340994_1341888_-	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930293.1|1342014_1342485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930294.1|1342610_1343438_-	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_003811306.1|1343466_1344243_-	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_023852802.1|1344239_1344515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930295.1|1344529_1344994_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930296.1|1345005_1345707_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|1345816_1346317_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930297.1|1346399_1347578_-	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811313.1|1349205_1349541_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930298.1|1349728_1351177_+	CoA transferase	NA	NA	NA	NA	NA
WP_023852799.1|1351234_1351579_+	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_003811316.1|1351685_1352225_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_005012067.1|1352317_1353268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268679.1|1353285_1353525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247530.1|1354006_1354438_-	YXWGXW repeat-containing protein	NA	NA	NA	NA	NA
WP_010930300.1|1354619_1355024_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010930301.1|1356260_1356584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247533.1|1356586_1357474_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003811322.1|1357506_1357932_-	universal stress protein	NA	NA	NA	NA	NA
WP_019247534.1|1358003_1358357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811324.1|1358596_1359103_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930302.1|1359141_1360473_-	transcriptional regulator PtsJ	NA	NA	NA	NA	NA
WP_003811326.1|1360532_1361348_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010930303.1|1361344_1362199_+	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA	NA
WP_010930304.1|1365261_1367805_-	malto-oligosyltrehalose synthase	NA	NA	NA	NA	NA
WP_010930305.1|1369171_1370926_-	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA	NA
WP_010930306.1|1370922_1373043_-	glycogen debranching protein GlgX	NA	NA	NA	NA	NA
WP_010930307.1|1373047_1375243_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA	NA
WP_010930308.1|1375239_1378581_-	maltose alpha-D-glucosyltransferase	NA	NA	NA	NA	NA
WP_010930208.1|1381383_1382334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811361.1|1382399_1382579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247449.1|1382695_1383451_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010930310.1|1383437_1384583_-	DUF3182 family protein	NA	NA	NA	NA	NA
WP_010930208.1|1385490_1386441_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	1446932	1502419	4106397	protease,transposase	Mollivirus(16.67%)	56	NA	NA
WP_005012067.1|1446932_1447883_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811846.1|1449084_1449531_-	flagellar export protein FliJ	NA	NA	NA	NA	NA
WP_019247562.1|1449523_1450999_-	flagellar protein export ATPase FliI	NA	NA	NA	NA	NA
WP_010930338.1|1450995_1451751_-	flagellar assembly protein FliH	NA	NA	NA	NA	NA
WP_003817203.1|1451743_1452754_-	flagellar motor switch protein FliG	NA	NA	NA	NA	NA
WP_010930339.1|1452743_1454420_-	flagellar M-ring protein FliF	NA	NA	NA	NA	NA
WP_010930340.1|1454732_1455065_+	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA	NA
WP_010930341.1|1455078_1455474_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930342.1|1455483_1455810_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA	NA
WP_019247563.1|1455806_1456133_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_023997203.1|1456059_1456473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930343.1|1457077_1457428_-	flagellar protein FliT	NA	NA	NA	NA	NA
WP_010930344.1|1457475_1457904_-	flagellar export chaperone FliS	NA	NA	NA	NA	NA
WP_010930345.1|1457911_1459285_-	flagellar filament capping protein FliD	NA	NA	NA	NA	NA
WP_003817216.1|1459425_1459803_-	flagellar protein FlaG	NA	NA	NA	NA	NA
WP_010930346.1|1460065_1461373_+	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_023852965.1|1461433_1462264_+	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_003811815.1|1462260_1462749_+	CvpA family protein	NA	NA	NA	NA	NA
WP_003811814.1|1462790_1464311_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	43.7	4.8e-97
WP_003811812.1|1464354_1464831_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
WP_010930348.1|1465634_1468232_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_003811806.1|1468261_1469083_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_003811803.1|1469809_1470559_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_010926570.1|1470742_1471621_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_010930349.1|1471718_1472435_+	UMP kinase	NA	NA	NA	NA	NA
WP_003811796.1|1472449_1473010_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_010930350.1|1473176_1473941_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	36.1	1.7e-18
WP_010930351.1|1473960_1474818_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003811788.1|1474814_1476014_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_010930352.1|1476053_1477388_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_010930353.1|1477440_1479777_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_003811782.1|1479902_1480466_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_010930354.1|1480474_1481566_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_003811776.1|1481637_1482093_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_010930355.1|1482093_1482888_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_010930356.1|1482884_1484066_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_003811770.1|1484052_1484658_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	40.2	8.8e-26
WP_003811768.1|1484654_1485428_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930357.1|1485439_1486267_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_010930358.1|1486428_1488792_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	35.9	2.2e-165
WP_010930359.1|1488859_1489579_-	glutamine amidotransferase	NA	NA	NA	NA	NA
WP_003811761.1|1489702_1490128_+	NfeD family protein	NA	NA	NA	NA	NA
WP_005012067.1|1490162_1491113_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811759.1|1491230_1492157_+	paraslipin	NA	NA	NA	NA	NA
WP_010930360.1|1492222_1493380_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811754.1|1493360_1493828_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930800.1|1493975_1494926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811752.1|1494942_1495377_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_003811750.1|1495366_1495717_+	RnfH family protein	NA	NA	NA	NA	NA
WP_003811748.1|1495913_1497068_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811746.1|1497064_1498237_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811743.1|1498284_1499178_+	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811741.1|1499223_1499661_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010930362.1|1499720_1500410_+	VIT family protein	NA	NA	NA	NA	NA
WP_010929577.1|1500419_1501370_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879624.1|1501468_1502419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	1701150	1756741	4106397	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1701150_1702101_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1702159_1702933_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1702925_1704482_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1704478_1705429_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1706755_1707358_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1707597_1708299_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1708292_1709075_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1709259_1710210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1710308_1711046_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1711235_1711994_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1712040_1713030_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1713207_1714176_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1715715_1716684_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1716692_1717634_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1718107_1719118_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1719108_1720623_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1720619_1721966_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1721968_1723003_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1723052_1724678_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1725230_1726181_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1726285_1727233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1727286_1729101_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1729093_1729768_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1729897_1732972_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1732985_1733285_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1733599_1734223_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1734466_1735336_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1735313_1736258_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1736343_1737270_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1737382_1738162_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1738152_1739349_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1739379_1740330_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1740551_1741241_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1741305_1742061_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1742112_1743105_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1743114_1744068_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1744183_1745146_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1746547_1746976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1746972_1747923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1748216_1748954_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1749377_1750565_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1750568_1750949_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1752668_1753640_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1753653_1754367_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1754371_1755289_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1755395_1755692_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1755790_1756741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	1778399	1870370	4106397	tRNA,transposase	Moraxella_phage(25.0%)	60	NA	NA
WP_014905945.1|1778399_1779350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1779373_1779838_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1779984_1781193_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1781236_1781674_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1781792_1783082_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1785822_1786773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1786871_1787888_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1788066_1789101_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1789097_1789724_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1789720_1790773_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1790822_1791593_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1791643_1792480_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1792675_1793416_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1793490_1794234_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1794910_1795669_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1796806_1798096_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1799706_1800954_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1800963_1802673_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1802669_1803608_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1803604_1804888_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1804891_1805374_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1805374_1806361_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1806533_1807253_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1807369_1808320_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1811505_1812855_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1812912_1813707_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1813840_1814716_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1814759_1818476_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1818484_1819114_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_010930610.1|1819540_1830313_+	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930611.1|1831075_1831810_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1831872_1834494_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1834474_1835605_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1835597_1837352_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1838669_1839170_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1839176_1840151_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1841707_1842199_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1842212_1843178_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_019247163.1|1843198_1843900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1845074_1845587_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1845665_1849289_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930622.1|1849302_1850334_-	C45 family peptidase	NA	NA	NA	NA	NA
WP_005012067.1|1850438_1851389_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809983.1|1852542_1853376_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1853389_1854148_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1854309_1855302_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1855519_1856296_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1856403_1857186_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1857312_1858899_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1858923_1859787_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1859994_1860771_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1860763_1861273_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010930629.1|1861401_1862085_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1862324_1863785_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1863804_1864449_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1864485_1865451_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1865549_1866500_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1866629_1867595_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1867694_1868960_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1869353_1870370_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	1990554	2060206	4106397	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1990554_1993212_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1993289_1994492_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1994488_1995001_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1995123_1995561_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1995837_1996788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1996886_1997837_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1998090_1999896_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2000009_2000177_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2000240_2000477_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2000845_2002045_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|2003560_2004511_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|2004962_2005964_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|2006136_2006994_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|2006990_2008253_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|2008353_2008728_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|2008800_2009988_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|2010072_2010843_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|2010956_2011721_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|2011671_2012973_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|2012969_2013776_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|2015520_2016492_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2016648_2017161_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|2017319_2018294_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|2019294_2020089_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|2020114_2020921_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|2021031_2021622_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2021632_2022811_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|2022913_2023288_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|2023540_2024872_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|2024938_2028169_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|2029659_2030406_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|2030490_2030952_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|2030989_2032048_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|2032010_2033840_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2033879_2034452_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2035876_2036698_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2037016_2038339_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2038698_2039334_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2039293_2040244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2041114_2041987_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2042064_2043204_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2043562_2044819_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2044824_2045352_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2045356_2046175_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2046174_2046897_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2046918_2047233_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2047250_2048399_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2048429_2049305_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2049301_2050621_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2050693_2051890_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2051900_2053388_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2055982_2056882_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2057019_2057985_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2058083_2059034_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2059255_2060206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2071702	2121098	4106397	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2071702_2072653_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2073790_2074087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2074261_2075614_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2075756_2076773_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2078752_2079766_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2079852_2080758_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2080914_2081259_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2081416_2081875_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2081888_2084105_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2084101_2085163_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2085191_2086166_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2086117_2086936_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2086948_2087557_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2087731_2088127_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2088145_2089585_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2089613_2089961_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2089979_2090930_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2091582_2092533_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2092616_2094434_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2094507_2095155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2095167_2096097_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2096266_2096731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2096978_2097659_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2097707_2099399_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2099414_2099966_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2099962_2100334_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2100446_2101283_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2101293_2101818_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2101915_2102095_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2102224_2103199_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2103329_2103686_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2103675_2104551_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2104649_2105534_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2105555_2106851_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2107799_2108450_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2108537_2110058_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2110315_2112181_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2113226_2114177_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2114194_2114335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2115149_2115509_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2115496_2116933_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2116929_2117583_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2117579_2118773_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2118876_2120151_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2120147_2121098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2132302	2266325	4106397	protease,tRNA,transposase	Klosneuvirus(12.5%)	117	NA	NA
WP_005013747.1|2132302_2133253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2133212_2133626_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2133910_2134210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2134619_2136902_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2137367_2137562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2137587_2139618_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2139637_2139850_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2140127_2140667_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2140780_2142076_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2142152_2143310_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2143493_2144393_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2144411_2145716_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2145681_2146788_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2146875_2147112_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2147250_2148321_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2148324_2149680_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2149706_2150867_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2150869_2151508_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2151509_2152796_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2152854_2154150_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2154156_2154663_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2154659_2155808_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2155835_2156261_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2156583_2159466_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2159558_2160314_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2161079_2162429_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2162527_2163478_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2163576_2164527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2164600_2165074_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2165099_2166308_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2166304_2167078_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2167077_2167701_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2167866_2168127_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2168430_2169012_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2169078_2169333_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2169319_2171944_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_010930589.1|2172015_2172834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810661.1|2172830_2173436_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930588.1|2173473_2174607_-	general secretion pathway protein	NA	NA	NA	NA	NA
WP_010930587.1|2176322_2176697_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930586.1|2176794_2178069_-	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930585.1|2178072_2179650_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930584.1|2180556_2181912_-	amidase	NA	NA	NA	NA	NA
WP_010930583.1|2181908_2183543_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930582.1|2183535_2184366_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003810637.1|2184383_2185328_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930581.1|2185380_2186955_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247553.1|2187002_2187362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247554.1|2187354_2187675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247555.1|2187790_2188723_+	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_003818676.1|2188825_2189782_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810623.1|2189931_2191269_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010930578.1|2191273_2192530_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930577.1|2192725_2193772_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_003818672.1|2193829_2194198_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930576.1|2194328_2195201_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818670.1|2195277_2196180_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930574.1|2197236_2198454_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_010929577.1|2199727_2200678_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929969.1|2200776_2201727_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2201927_2202737_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2202861_2203812_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2203808_2204702_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2204826_2205021_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2205020_2205362_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2205371_2207234_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2207363_2207876_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2207878_2208202_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2208203_2208614_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2208651_2209863_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2209880_2210393_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2210608_2211100_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2211352_2213389_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2213466_2214669_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2214797_2215448_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2217005_2217956_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2218526_2218739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2218756_2219488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2219522_2220164_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2220156_2220825_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2223037_2223814_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2223835_2224993_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2224989_2225421_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2225417_2226221_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2226234_2226636_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2226702_2227674_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2227739_2228963_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2229190_2230141_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2230264_2232718_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2232906_2234211_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2234315_2234969_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2234971_2236282_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2236478_2237039_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2237150_2237351_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2237696_2238263_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2238346_2238550_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2238856_2239177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2239218_2239500_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2239574_2240831_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2241213_2241543_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2243113_2243935_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2243934_2245074_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2245080_2245977_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2245973_2247899_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2248258_2250871_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2250923_2253224_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2253220_2254429_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2254690_2255065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2255061_2256012_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2256110_2258105_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2258164_2259130_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2259119_2261981_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2261983_2262490_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2262594_2263803_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2263804_2264743_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2264904_2265378_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2265374_2266325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2352503	2416081	4106397	protease,transposase	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2352503_2353454_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2353755_2354232_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2354855_2356493_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2356523_2357837_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2357970_2358288_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2358388_2359711_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2359707_2360658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2360756_2361707_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2362236_2363259_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2363287_2364118_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2364134_2365832_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2365896_2366973_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2367132_2367996_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2368026_2368596_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2368612_2369464_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2370521_2371403_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2371477_2372467_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2372529_2373480_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2373542_2374400_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2374459_2374948_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2376520_2377711_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2377707_2379294_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2379312_2380380_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2380484_2382029_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2382448_2384023_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2384130_2385147_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2385143_2385983_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2385987_2387625_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2387621_2388572_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2388589_2388733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2388714_2389989_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2390018_2390309_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2390381_2391395_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2391414_2392677_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2392679_2393603_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2393599_2395093_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2395103_2396036_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2396217_2397543_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2397577_2398921_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2398993_2400514_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2400668_2401400_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2401467_2402808_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2402823_2403735_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2403725_2404319_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2404380_2404767_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2404778_2405249_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2405260_2405884_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2405904_2408652_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2415130_2416081_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2688067	2728736	4106397	tRNA,transposase	Salmonella_phage(33.33%)	42	NA	NA
WP_010929591.1|2688067_2689018_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004567479.1|2689128_2689311_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931004.1|2689410_2690007_-	lipoprotein	NA	NA	NA	NA	NA
WP_010931005.1|2690190_2691282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812822.1|2691781_2692192_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931006.1|2692250_2692592_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	42.2	2.8e-13
WP_010931007.1|2692597_2695015_-|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010926359.1|2695027_2696050_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2H4UW22	Bodo_saltans_virus	38.6	1.0e-26
WP_003812832.1|2696124_2696484_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_003812834.1|2696499_2696697_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_010929584.1|2697032_2697983_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003816756.1|2698177_2698627_+	dUTP diphosphatase	NA	S4TNT3	Salmonella_phage	67.2	3.7e-45
WP_005012808.1|2698623_2699574_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931008.1|2699684_2701133_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931009.1|2701247_2701529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|2701632_2702583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820420.1|2702827_2703541_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_019247724.1|2703663_2703891_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003816758.1|2704185_2704824_-	DedA family protein	NA	NA	NA	NA	NA
WP_010931011.1|2704932_2705967_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_010929591.1|2705963_2706914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931012.1|2707329_2707854_-	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_004567322.1|2707857_2708127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931013.1|2708325_2709387_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010931014.1|2709470_2711105_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931015.1|2711106_2711910_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931016.1|2711938_2712898_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931017.1|2712901_2714416_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248147.1|2714452_2715457_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931018.1|2715888_2716359_-	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_010931019.1|2716394_2717006_-	LysE family translocator	NA	NA	NA	NA	NA
WP_010931020.1|2717036_2717660_-	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931021.1|2717740_2719273_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931022.1|2719307_2720549_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931023.1|2720592_2721624_-	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931024.1|2721620_2722790_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931025.1|2722783_2723464_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|2723625_2724468_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931027.1|2724630_2725602_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931028.1|2725773_2726652_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931029.1|2726674_2727745_-	FUSC family protein	NA	NA	NA	NA	NA
WP_005013747.1|2727785_2728736_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2732847	2814982	4106397	tRNA,transposase	Bacillus_virus(25.0%)	60	NA	NA
WP_005013747.1|2732847_2733798_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931032.1|2734547_2734982_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003816890.1|2734974_2736210_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931033.1|2736217_2737012_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931034.1|2737008_2737812_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931035.1|2737838_2738816_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931036.1|2738844_2740416_-	amidohydrolase	NA	NA	NA	NA	NA
WP_014905903.1|2740426_2741248_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|2742972_2744403_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931038.1|2744415_2745105_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|2745200_2746541_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_019247974.1|2746542_2746800_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931040.1|2747153_2748746_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_003812368.1|2748842_2750303_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931041.1|2750525_2751137_+	DUF2239 family protein	NA	NA	NA	NA	NA
WP_010931070.1|2754883_2755834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931042.1|2756249_2758886_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_014486086.1|2758882_2760007_-	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_019247521.1|2760003_2761386_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810957.1|2761521_2761989_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019249399.1|2762907_2764053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931046.1|2764054_2765785_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_004568502.1|2765902_2766211_-	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931047.1|2766223_2767036_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931048.1|2767916_2769005_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931049.1|2770207_2770996_+	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931050.1|2771035_2772640_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931051.1|2772720_2773461_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247407.1|2773468_2773963_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931052.1|2774335_2775355_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931053.1|2775351_2776734_-	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931054.1|2776766_2777627_-	amidohydrolase	NA	NA	NA	NA	NA
WP_029443733.1|2778630_2779512_+	NRDE family protein	NA	NA	NA	NA	NA
WP_003810921.1|2779570_2780008_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_003816577.1|2780098_2781070_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931057.1|2781108_2782053_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_010931058.1|2782148_2782958_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931059.1|2783034_2783409_-	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931060.1|2783515_2784208_-	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_003810909.1|2784200_2784617_-|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931061.1|2784727_2785360_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_010931062.1|2785388_2785832_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_003810897.1|2785853_2786945_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931063.1|2786999_2787800_-	aldolase	NA	NA	NA	NA	NA
WP_010931064.1|2787935_2788556_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931065.1|2788695_2789169_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2790308_2791259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931066.1|2791255_2798917_-	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_010931067.1|2799157_2803204_-	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_003816847.1|2803516_2804098_+	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931068.1|2804094_2805393_+	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010931069.1|2805472_2806501_+	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931070.1|2806761_2807712_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|2807708_2808659_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2808975_2809581_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2809634_2810948_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2811022_2811493_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2811492_2812281_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2812291_2813944_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2814031_2814982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2838907	2886615	4106397	transposase	Pelagibacter_phage(25.0%)	40	NA	NA
WP_005012067.1|2838907_2839858_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2839992_2841099_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2841109_2842207_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2842351_2843557_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2843563_2844085_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2844081_2844573_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2844569_2844821_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2844801_2845287_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2845422_2848884_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2848901_2849786_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2849795_2850227_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2850473_2850977_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2851054_2852455_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2852529_2853405_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2853401_2854409_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2854876_2855182_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2855272_2855863_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2856053_2857070_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2857261_2859598_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2859680_2860115_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2860213_2861164_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2861262_2862213_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931099.1|2862209_2863004_-	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_010931100.1|2863035_2863740_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931101.1|2863814_2864615_-	SURF1 family protein	NA	NA	NA	NA	NA
WP_003809276.1|2864611_2865019_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_003819722.1|2865015_2865657_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_010931102.1|2865649_2867650_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010931103.1|2868910_2870242_+	MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2870238_2871189_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2872895_2873162_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2873869_2874208_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2878760_2879363_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2879459_2880749_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2880806_2881538_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2881534_2882338_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2882334_2883423_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2883419_2884349_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2884497_2885643_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2885664_2886615_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2894612	2958360	4106397	protease,transposase	uncultured_Mediterranean_phage(22.22%)	56	NA	NA
WP_010931114.1|2894612_2896928_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2896983_2899152_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2899148_2904338_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2904427_2904742_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2904969_2905215_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2905309_2905828_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2905927_2907133_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2907248_2908646_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2908762_2909341_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2909413_2910805_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2910972_2911923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2912203_2912824_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2912820_2913234_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2913230_2914274_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2914329_2914518_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2914527_2915292_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2915382_2916039_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2916130_2916889_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2916914_2918516_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2918716_2919721_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2919821_2920085_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2920202_2920979_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2921569_2922520_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2924903_2926016_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_010929584.1|2926072_2927023_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268685.1|2927040_2927307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813070.1|2927231_2927453_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_010931131.1|2927666_2929073_-	threonine synthase	NA	NA	NA	NA	NA
WP_003813074.1|2929069_2930374_-	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_010931132.1|2930370_2931558_-	alanine transaminase	NA	NA	NA	NA	NA
WP_003813077.1|2931774_2932227_+	Xcc1710-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813079.1|2932229_2932694_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023853657.1|2932773_2934453_+	PhoH family protein	NA	A0A2I7SAD7	Vibrio_phage	36.7	7.3e-70
WP_003813085.1|2934557_2935535_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA	NA
WP_010931134.1|2935614_2936583_+	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_003813089.1|2936603_2937977_-	replicative DNA helicase	NA	C7BGG1	Burkholderia_phage	58.2	4.0e-135
WP_003813091.1|2937973_2938810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931135.1|2938926_2939382_-	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_003813094.1|2939397_2939670_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_003813095.1|2939762_2940086_-	primosomal replication protein N	NA	NA	NA	NA	NA
WP_010926331.1|2940133_2940514_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003813103.1|2940733_2941531_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA	NA
WP_010931136.1|2941687_2943550_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA	NA
WP_003820295.1|2943599_2944511_-	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_003813109.1|2944515_2944782_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_010931137.1|2944868_2945738_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931138.1|2945873_2946839_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813114.1|2947009_2948020_+	acyltransferase family protein	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	24.6	3.6e-16
WP_010931139.1|2948167_2949319_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA	NA
WP_003814555.1|2950461_2951934_-	magnesium transporter	NA	NA	NA	NA	NA
WP_003814554.1|2951944_2952355_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_010929220.1|2952418_2953465_-	YeiH family putative sulfate export transporter	NA	NA	NA	NA	NA
WP_003814552.1|2953571_2954450_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931140.1|2954463_2955660_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852727.1|2955736_2957413_+	long-chain-fatty-acid--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	28.1	9.3e-33
WP_005012067.1|2957409_2958360_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	2967119	3011640	4106397	transposase	Bacillus_virus(20.0%)	43	NA	NA
WP_010930176.1|2967119_2968070_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2968144_2969299_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2969355_2970306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2970404_2970710_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2970738_2971173_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2971174_2972419_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2972415_2973126_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2973140_2974052_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2974414_2974819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2974815_2975274_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2975280_2976189_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2976185_2977052_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2977038_2977866_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2977876_2979004_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2980081_2981320_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2981361_2982624_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2982630_2983383_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2983434_2983620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2983895_2984360_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2984391_2985051_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2985195_2987304_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2987300_2988251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2988354_2988975_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2989066_2989819_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2990953_2992078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2992123_2992492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2992733_2993684_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2994719_2995262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2995459_2995630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929591.1|2995647_2996598_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2996594_2997560_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2997629_2998466_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|2998978_3000088_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3000149_3001100_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931159.1|3001292_3002075_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931160.1|3002088_3002838_-	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931161.1|3002865_3004212_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931162.1|3004237_3005167_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003819549.1|3005282_3006188_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931163.1|3006205_3007405_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_077069051.1|3007477_3008170_-	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	6.2e-07
WP_010931165.1|3008218_3010645_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_023853143.1|3010689_3011640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	3381046	3434787	4106397	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_077069052.1|3381046_3381997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3382401_3383046_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3383070_3383655_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3383755_3384373_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3384375_3386091_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3386087_3386396_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3386412_3387030_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3387074_3387377_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3387477_3388332_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3388519_3388744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3388913_3389186_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3389603_3390011_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3390380_3391175_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3391275_3392511_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3392579_3393596_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3393607_3394984_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3394980_3396177_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3396173_3397712_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3397708_3398968_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3400908_3401859_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3402625_3403720_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3403712_3405047_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3405000_3405684_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808195.1|3405709_3406873_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3406869_3407871_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3407870_3408743_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3408739_3409489_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3409485_3410277_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3410273_3411413_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3411688_3412474_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3412507_3413290_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3413293_3413683_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3414822_3415686_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3415721_3416810_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3416806_3417757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3418110_3421089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3422015_3422894_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3424842_3425793_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3425789_3426257_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3426299_3427070_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3427090_3427891_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3427901_3429311_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3429405_3430191_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3430430_3431447_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3431554_3431947_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3432084_3432765_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3432769_3433741_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3433836_3434787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	3440942	3500242	4106397	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3440942_3442706_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3442817_3443696_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3443808_3444624_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3444627_3444879_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3444963_3445980_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3446310_3446532_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3448892_3449810_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3450307_3451516_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3451595_3453167_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3453284_3454220_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3454408_3455353_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3455920_3461638_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3461643_3462771_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3462826_3463453_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3463724_3464741_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3464836_3465547_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3465543_3466533_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3466628_3468260_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3468262_3469000_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3469155_3470028_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3470296_3471517_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3471513_3472173_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3472244_3472877_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3472906_3473425_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3473435_3474545_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3474591_3475446_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3475447_3476350_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3477572_3478523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3480279_3481269_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3481265_3481424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3481444_3482233_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3482229_3483261_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3483279_3483843_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3483898_3485419_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3485682_3486387_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3486394_3487132_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3487237_3487612_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3487654_3488944_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3488940_3490110_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3490106_3490946_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3491005_3491941_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3491953_3492904_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3493002_3493965_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3493996_3494356_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3494480_3495383_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3495384_3497157_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3497191_3497968_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3499291_3500242_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011205	Bordetella pertussis strain I763 chromosome, complete genome	4106397	3515180	3573253	4106397	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3515180_3516131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3516259_3517393_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3517436_3518342_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3518344_3520045_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3520041_3520962_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3520969_3521947_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3522005_3523040_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3525014_3525251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931396.1|3525377_3526241_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3526329_3527151_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3527230_3527968_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3527964_3528957_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3529070_3529733_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3529777_3530926_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3533249_3534200_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3534540_3535491_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3535589_3536540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3536836_3537334_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3537376_3539152_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3539159_3540026_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3540032_3540767_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3541936_3542731_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3543020_3543611_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3543644_3544973_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3545047_3546193_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3546304_3547303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3547265_3547700_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3549216_3550101_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3550097_3551303_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3551299_3552160_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3552272_3554063_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3554103_3554769_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3554769_3555078_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3555243_3556530_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3557963_3558914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3560865_3562080_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3562185_3563175_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3563171_3563780_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3563792_3564422_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3564418_3565039_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3565070_3565862_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3566713_3567169_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3567187_3568114_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3568167_3569454_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3570384_3571257_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3571253_3572204_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3572302_3573253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
