The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	27282	70036	4110589	transposase,tRNA	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	77634	136108	4110589	transposase,tRNA	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	268400	342744	4110589	transposase	uncultured_Mediterranean_phage(15.38%)	55	NA	NA
WP_010929591.1|268400_269351_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|269347_270538_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|270659_271424_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|271510_272614_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|272805_273822_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|274103_274592_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|275935_276616_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|276677_277529_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|277525_278323_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|278426_279320_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|279331_281221_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|281557_285331_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|285327_286278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268689.1|286295_286472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929826.1|286586_287279_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|287652_288153_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|288259_289180_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|289196_289673_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|289766_291617_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|291672_292431_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|292458_293892_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|293965_294745_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|294757_295591_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|295599_296370_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|296369_297434_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|297585_300213_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|300276_302898_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|303825_304284_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|304562_306806_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|307002_309027_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|309150_310113_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|310324_311464_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|311486_312452_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|312647_313838_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|313851_314097_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|314125_316147_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|316193_317801_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|317901_319071_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|321952_322903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|322926_323985_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|324059_324434_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|324988_325939_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|327495_328341_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|328428_329592_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|330010_330982_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|331020_332448_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|332567_333359_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|333477_335931_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|336025_337135_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|337137_338547_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|338952_339087_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|339182_339554_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|339550_339823_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|339871_341563_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|341793_342744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	525106	643001	4110589	transposase,tRNA	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|525106_526057_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|526155_527106_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|527828_529103_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|529189_530272_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|530282_531095_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|531131_531458_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|531462_532023_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|532263_533256_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|533274_534270_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|534285_535662_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|535654_538036_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|538052_538442_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|538568_538799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|538903_539854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|539952_540903_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|540899_541772_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|542702_543989_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|544042_544969_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|544987_545443_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|546294_547086_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|547117_547738_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|547734_548364_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|548376_548985_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|548981_549971_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|550076_551291_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|553242_554193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|555626_556913_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|557078_557387_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|557387_558053_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|558093_559884_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|559996_560857_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|560853_562059_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|562055_562940_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|564456_564891_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|564853_565852_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|565963_567109_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|567183_568512_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|568545_569136_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|569425_570220_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|571389_572124_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|572130_572997_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|573004_574780_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|574822_575320_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|575616_576567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|576665_577616_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|577956_578907_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|581230_582379_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|582423_583086_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|583199_584192_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|584188_584926_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|585005_585827_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023995266.1|585915_586779_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|586905_587142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|589116_590151_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|590209_591187_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|591194_592115_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|592111_593812_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|593814_594720_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|594763_595897_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|596025_596976_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|597074_599144_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|599186_601289_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|601595_602672_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|602747_603632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|603814_604237_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|604246_605647_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|605689_606595_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|606693_608235_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|608269_608809_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|608821_609292_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|609429_609672_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|609788_610670_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|610742_611063_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|611914_612865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|614188_614965_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|614999_616772_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|616773_617676_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|617800_618160_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|618191_619154_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|619252_620203_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|620215_621151_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|621210_622050_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|622046_623216_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|623212_624502_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|624544_624919_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|625024_625762_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|625769_626474_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|626737_628258_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|628313_628877_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|628895_629927_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|629923_630712_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|630732_630891_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|630887_631877_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|633633_634584_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|635806_636709_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|636710_637565_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|637611_638721_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|638731_639250_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|639279_639912_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|639983_640643_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|640639_641860_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|642128_643001_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 6
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	647415	711248	4110589	transposase,tRNA	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|647415_648432_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|648703_649330_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|649385_650513_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|650518_656236_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|656803_657748_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|657936_658872_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|658989_660561_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|660640_661849_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|662346_663264_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|665624_665846_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|666176_667193_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|667277_667529_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|667532_668348_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|668460_669339_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|669450_671214_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|671329_672670_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|673739_675164_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|675163_675865_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|677369_678320_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|678415_679387_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|679391_680072_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|680209_680602_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|680709_681726_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|681965_682751_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|682845_684255_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|684265_685066_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|685086_685857_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|685899_686367_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|686363_687314_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|689262_690141_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|691067_694046_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|694399_695350_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|695346_696435_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|696470_697334_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|698473_698863_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|698866_699649_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|699682_700468_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|700743_701883_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|701879_702671_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|702667_703417_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|703413_704286_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|704285_705287_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_024000003.1|705283_706447_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|706472_707156_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|707109_708444_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|708436_709531_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|710297_711248_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	730159	807468	4110589	integrase,transposase,protease,tRNA	Bacillus_phage(20.0%)	58	777296:777314	797184:797202
WP_023995489.1|730159_731110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|731208_732684_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|734271_735159_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|735161_736103_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|736148_737714_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|739491_740817_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|740999_742457_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|742420_742918_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|742948_743920_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|743972_744410_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|744533_745202_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|745930_747034_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|747136_748414_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|748425_749451_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|749452_750823_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|750823_751960_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|752006_753932_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|753928_755050_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|755046_756201_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|756197_757328_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|757335_758901_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|758907_760290_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|760568_761180_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|761271_762687_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|762704_763415_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|763411_764734_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|764813_766775_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|766900_768214_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|768322_769621_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|769803_770712_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|770721_770931_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|770942_772622_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|772723_773677_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|773767_774595_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_077069033.1|774593_776480_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|776476_777076_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|777124_778024_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
777296:777314	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|778232_779183_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|779305_779920_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|780048_780645_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|780641_781424_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|781496_782588_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|782867_783995_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|784336_785383_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|785530_788650_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_010931302.1|788651_791603_+	restriction endonuclease subunit M	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|791618_792830_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|793013_793964_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|793980_794475_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|794478_794736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|795279_796191_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|796272_796557_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|797340_798291_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
797184:797202	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|798709_801274_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|801318_803172_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|803504_805076_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_162291319.1|806344_806500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|806517_807468_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	1062806	1155794	4110589	transposase	Bacillus_virus(30.0%)	86	NA	NA
WP_005012067.1|1062806_1063757_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1063859_1064522_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1064616_1064787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1065139_1066141_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1066143_1067340_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1067360_1068164_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1068244_1068541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1068571_1069135_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1069175_1070033_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1070040_1070790_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1070811_1071684_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1071712_1072492_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1072525_1073323_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1075977_1076370_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1076363_1077224_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1077227_1078190_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1078966_1079656_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1080516_1081467_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1081816_1082686_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1082756_1083452_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1083441_1083951_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1083947_1085168_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1085115_1086018_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1086904_1088191_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1088229_1089603_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1089641_1090343_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1090641_1091631_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1091731_1092193_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_077069034.1|1092208_1092757_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1092898_1094374_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1094479_1095571_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1095574_1096357_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1096366_1097155_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1098280_1098715_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1098711_1099722_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1099765_1100692_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1100978_1101347_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_154698394.1|1101399_1101546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853143.1|1101563_1102514_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1102558_1104985_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1105033_1105726_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1105798_1106998_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1107015_1107921_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1108036_1108966_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1108991_1110338_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1110365_1111115_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1111128_1111911_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1112103_1113054_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1113115_1114225_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1114737_1115574_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1115643_1116609_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1116605_1117556_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998107.1|1117573_1117744_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247492.1|1117941_1118484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1119519_1120470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1120711_1121080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1121125_1122250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1123384_1124137_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1124228_1124849_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1124952_1125903_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1125899_1128008_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1128152_1128812_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1128843_1129308_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1129583_1129769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1129820_1130573_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1130579_1131842_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1131883_1133122_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1134199_1135327_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1135337_1136165_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1136151_1137018_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1138384_1138789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1139151_1140063_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1140077_1140788_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1140784_1142029_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1142030_1142465_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1142493_1142799_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1142897_1143848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1143904_1145059_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1145133_1146084_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1146615_1147413_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1147460_1148114_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1148070_1149159_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1149323_1151549_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1153826_1154723_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_162268686.1|1154676_1154826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1154843_1155794_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	1186180	1257151	4110589	transposase,protease	uncultured_Mediterranean_phage(25.0%)	53	NA	NA
WP_005012808.1|1186180_1187131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1187187_1188300_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1190683_1191634_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1192224_1193001_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1193118_1193382_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1193482_1194487_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1194687_1196289_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1196314_1197073_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1197164_1197821_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1197911_1198676_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1198685_1198874_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1198929_1199973_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1199969_1200383_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1200379_1201000_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1201280_1202231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1202398_1203790_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1203862_1204441_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1204557_1205955_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1206070_1207276_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1207375_1207894_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1207988_1208234_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1208461_1208776_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1208865_1214055_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1214051_1216220_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1216275_1218591_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1218595_1219915_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1219933_1221607_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1221611_1222280_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1222436_1226258_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_154698391.1|1226412_1226571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005015810.1|1226588_1227539_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1227560_1228706_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1228854_1229784_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1229780_1230869_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1230865_1231669_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1231665_1232397_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1232454_1233744_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1233840_1234443_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1238996_1239335_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1240042_1240309_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1242015_1242966_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1242962_1244294_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1245554_1247555_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1247547_1248189_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1248185_1248593_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1248589_1249390_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1249464_1250169_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1250200_1250995_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1250991_1251942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1252040_1252991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1253089_1253524_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1253606_1255943_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1256134_1257151_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	1304545	1385420	4110589	transposase,tRNA	Bacillus_virus(25.0%)	59	NA	NA
WP_010927663.1|1304545_1305496_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1305492_1306443_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1306703_1307732_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1307811_1309110_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1309106_1309688_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1310000_1314047_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1314287_1321949_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1321945_1322896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1324035_1324509_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1324648_1325269_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1325404_1326205_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1326259_1327351_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1327372_1327816_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1327844_1328477_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1328587_1329004_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1328996_1329689_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1329795_1330170_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1330246_1331056_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1331151_1332096_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1332134_1333106_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1333196_1333634_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1333692_1334574_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1335577_1336438_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1336470_1337853_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1337849_1338869_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1339241_1339736_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1339743_1340484_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1340564_1342169_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1342208_1342997_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1344199_1345288_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1346168_1346981_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1346993_1347302_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1347419_1349150_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1349151_1350297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1350426_1351095_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1351216_1351684_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1351819_1353202_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1353198_1354323_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1354319_1356956_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1357371_1358322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1362068_1362680_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1362902_1364363_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1364459_1366052_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1366405_1366663_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1366664_1368005_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1368100_1368790_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1368802_1370233_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1371957_1372779_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1372789_1374361_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1374389_1375367_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1375393_1376197_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1376193_1376988_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1376995_1378231_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1378223_1378658_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1379407_1380358_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1380979_1382707_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1382818_1384177_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1384233_1384452_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1384469_1385420_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	1504815	1558000	4110589	transposase,tRNA	Salmonella_phage(22.22%)	47	NA	NA
WP_005013747.1|1504815_1505766_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1505783_1505936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1505932_1506286_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1506298_1506661_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1506702_1507128_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1507330_1508587_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1508785_1509766_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1509915_1511157_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1511255_1512206_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1512214_1512910_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1515731_1516331_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1516341_1518507_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1518530_1520315_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1520314_1520404_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1521098_1521371_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1521370_1523437_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1523433_1524384_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1524499_1524832_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1524828_1525515_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1525501_1526461_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1526502_1528863_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1528862_1529495_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1529596_1530937_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1530983_1532339_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1532464_1533109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1533053_1533371_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1533643_1534159_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1534252_1534414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1534429_1535185_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1535523_1535730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1535737_1536397_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1536691_1538896_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1539006_1540230_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1540352_1541327_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1541394_1542588_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1542602_1543403_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1543399_1545256_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1545252_1545858_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1545876_1547262_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1547987_1549214_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1549302_1550085_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1550183_1551134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1551160_1551934_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1551945_1553187_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1554973_1555924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930389.1|1555955_1557053_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	37.3	3.5e-20
WP_005013747.1|1557049_1558000_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	1599849	1667934	4110589	transposase,tRNA	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1599849_1600338_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1600455_1601034_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1601139_1601508_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1601606_1602557_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1602563_1603676_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1604362_1605565_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1605600_1605747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1605768_1608429_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1608441_1611846_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1612513_1614739_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1614785_1615112_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1615162_1615771_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1615869_1616820_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1616889_1617654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1617650_1618250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1618353_1619205_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1619264_1619891_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1619887_1620838_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1620936_1622049_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1622038_1623040_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1623145_1624657_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1624653_1625958_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1626069_1626630_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1626897_1627452_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1627907_1628123_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1628377_1630975_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1630971_1632159_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1632816_1633431_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1633519_1634647_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1634658_1635564_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1636456_1637407_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1637588_1638341_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1638409_1639069_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1639065_1639794_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1639806_1642086_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1642110_1642314_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1642355_1642988_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1643123_1644041_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1644037_1644751_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1644988_1645759_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1645763_1646363_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1646607_1648098_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1648156_1648441_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1648578_1648734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1649006_1649933_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1650069_1650810_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1650976_1652353_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1652534_1653440_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1655091_1656894_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1657020_1657662_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1657760_1658711_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1658732_1659953_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1660138_1661551_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1661614_1662682_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1662681_1664169_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1664178_1665123_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1665282_1665981_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1666058_1666964_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1666983_1667934_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	1703883	1759474	4110589	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1703883_1704834_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1704892_1705666_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1705658_1707215_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1707211_1708162_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1709488_1710091_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1710330_1711032_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1711025_1711808_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1711992_1712943_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1713041_1713779_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1713968_1714727_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1714773_1715763_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1715940_1716909_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1718448_1719417_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1719425_1720367_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1720840_1721851_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1721841_1723356_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1723352_1724699_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1724701_1725736_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1725785_1727411_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1727963_1728914_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1729018_1729966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1730019_1731834_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1731826_1732501_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1732630_1735705_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1735718_1736018_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1736332_1736956_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1737199_1738069_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1738046_1738991_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1739076_1740003_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1740115_1740895_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1740885_1742082_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1742112_1743063_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1743284_1743974_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1744038_1744794_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1744845_1745838_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1745847_1746801_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1746916_1747879_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1749280_1749709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1749705_1750656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1750949_1751687_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1752110_1753298_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1753301_1753682_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1755401_1756373_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1756386_1757100_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1757104_1758022_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1758128_1758425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1758523_1759474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	1962858	2007244	4110589	transposase,tRNA	Faecalibacterium_phage(25.0%)	36	NA	NA
WP_005012067.1|1962858_1963809_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930697.1|1963890_1964439_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930698.1|1964441_1964780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930699.1|1965174_1967766_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_029443737.1|1967832_1968576_+	3'-5' exonuclease	NA	A0A2K9V2V7	Faecalibacterium_phage	31.8	4.3e-06
WP_003810206.1|1968588_1968975_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_003810207.1|1968981_1969272_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_010930701.1|1969407_1969707_+	YciI family protein	NA	NA	NA	NA	NA
WP_010930702.1|1969775_1970678_+	EamA family transporter	NA	NA	NA	NA	NA
WP_010930703.1|1970681_1971452_+	anion permease	NA	NA	NA	NA	NA
WP_019248436.1|1971837_1972287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|1972354_1973305_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010926318.1|1973666_1974578_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023853568.1|1974803_1976321_+	succinate CoA transferase	NA	NA	NA	NA	NA
WP_010930705.1|1977552_1978515_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248843.1|1978603_1978852_+	DUF1127 domain-containing protein	NA	NA	NA	NA	NA
WP_047122782.1|1985409_1985853_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810239.1|1985917_1986190_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930706.1|1986186_1987134_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930707.1|1987315_1988710_+	amidase family protein	NA	NA	NA	NA	NA
WP_003810249.1|1988732_1989128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930708.1|1989124_1990384_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	45.7	1.1e-91
WP_003818514.1|1990505_1991561_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_003810254.1|1991563_1992223_-	lipoprotein	NA	NA	NA	NA	NA
WP_003818515.1|1992238_1994896_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1994973_1996176_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1996172_1996685_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1996807_1997245_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1997521_1998472_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_062826579.1|1998570_1999521_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1999774_2001580_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|2001693_2001861_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|2001924_2002161_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|2002529_2003729_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_005012067.1|2005244_2006195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929591.1|2006293_2007244_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	2203509	2259794	4110589	transposase,protease	Lake_Baikal_phage(25.0%)	51	NA	NA
WP_010929577.1|2203509_2204460_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2204660_2205470_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2205594_2206545_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2206541_2207435_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2207559_2207754_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2207753_2208095_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2208104_2209967_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2210096_2210609_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2210611_2210935_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2210936_2211347_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2211384_2212596_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2212613_2213126_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2213341_2213833_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2214085_2216122_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2216199_2217402_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2217530_2218181_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2219738_2220689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2221259_2221472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2221489_2222221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2222255_2222897_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2222889_2223558_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2225770_2226547_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2226568_2227726_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2227722_2228154_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2228150_2228954_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2228967_2229369_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2229435_2230407_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2230472_2231696_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2231923_2232874_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2232997_2235451_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2235639_2236944_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2237048_2237702_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2237704_2239015_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2239211_2239772_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2239883_2240084_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2240429_2240996_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2241079_2241283_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2241589_2241910_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2241951_2242233_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2242307_2243564_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2243946_2244276_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2245846_2246668_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2246667_2247807_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2247813_2248710_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2248706_2250632_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2250991_2253604_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2253656_2255957_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2255953_2257162_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2257423_2257798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2257794_2258745_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2258843_2259794_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	2355235	2418813	4110589	transposase,protease	uncultured_Caudovirales_phage(11.11%)	49	NA	NA
WP_010931070.1|2355235_2356186_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2356284_2357235_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2357536_2358013_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2358636_2360274_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2360304_2361618_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2361751_2362069_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2362169_2363492_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2363488_2364439_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2364968_2365991_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2366019_2366850_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2366866_2368564_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2368628_2369705_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2369864_2370728_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2370758_2371328_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2371344_2372196_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2373253_2374135_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2374209_2375199_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2375261_2376212_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2376274_2377132_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2377191_2377680_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2379252_2380443_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2380439_2382026_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2382044_2383112_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2383216_2384761_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2385180_2386755_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2386862_2387879_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2387875_2388715_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2388719_2390357_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2390353_2391304_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268683.1|2391321_2391465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930851.1|2391446_2392721_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2392750_2393041_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2393113_2394127_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2394146_2395409_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2395411_2396335_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2396331_2397825_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2397835_2398768_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2398949_2400275_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2400309_2401653_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2401725_2403246_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2403400_2404132_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2404199_2405540_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2405555_2406467_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2406457_2407051_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2407112_2407499_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2407510_2407981_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2407992_2408616_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2408636_2411384_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2417862_2418813_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	2564803	2623047	4110589	transposase,tRNA	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2564803_2565754_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2566233_2566890_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2566904_2568572_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2568574_2569204_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2569415_2570510_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2570654_2571467_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2571470_2573174_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2573224_2574355_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2574541_2575618_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2575699_2576350_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2576364_2577768_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2578051_2578870_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2578866_2579571_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2580470_2581586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2581619_2581994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2582016_2583174_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2583186_2583420_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2584054_2587024_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2587038_2587248_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2587399_2588029_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2588025_2590116_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2590139_2590820_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2590816_2591377_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2591383_2592481_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2592633_2593227_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2593223_2594516_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2594529_2595072_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2595081_2595918_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2595951_2597013_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2597054_2598107_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2598122_2598425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2598566_2599517_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2599534_2599699_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2599695_2601390_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2601386_2602472_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2602519_2603419_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2603429_2604074_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2605095_2608338_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2608348_2609503_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2609729_2610692_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2610790_2611741_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2611839_2612790_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2612799_2613489_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2613548_2613986_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2614031_2614925_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2614972_2616145_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2616141_2617296_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2617492_2617843_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2617832_2618267_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_077069037.1|2618283_2619234_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2619381_2619849_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2619829_2620987_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2621052_2621979_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2622096_2623047_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	2665327	2731827	4110589	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2665327_2666278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2666647_2667220_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2667222_2668233_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2668225_2668726_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2668736_2669078_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2669089_2669881_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2669897_2670167_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2670189_2670978_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2671024_2672041_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2672257_2673700_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2673878_2675498_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2675618_2677439_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2677517_2679050_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2679083_2680730_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2680799_2681822_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2681839_2682973_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2682975_2683665_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2683664_2684450_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2684493_2685258_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2685296_2686718_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2686783_2687488_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2687535_2687955_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2687967_2688375_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2688558_2689269_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2689395_2689686_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2689703_2690186_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2694691_2695846_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2696151_2697168_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2697414_2698203_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2698269_2698950_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2698946_2699717_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2699815_2700766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2700821_2701739_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2701749_2702928_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2702947_2703943_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2705531_2706140_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2706127_2707168_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2707185_2708148_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2708144_2709338_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2709334_2710132_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2710157_2711144_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2711162_2713202_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2713403_2714084_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2714097_2715009_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2715005_2715584_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2715722_2716628_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2716635_2720055_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2720042_2722643_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2723598_2724231_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2724624_2725383_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2725379_2726582_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2726769_2727720_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2728627_2729773_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2729759_2730515_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2730631_2730811_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2730876_2731827_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	2916328	3067977	4110589	transposase,holin,protease,tRNA	uncultured_Mediterranean_phage(15.79%)	120	NA	NA
WP_010929956.1|2916328_2917279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813574.1|2917377_2918259_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003821443.1|2918336_2919716_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930218.1|2919754_2920600_-	FTR1 family protein	NA	NA	NA	NA	NA
WP_003813580.1|2920615_2920960_-	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930217.1|2920962_2921499_-	iron transporter	NA	NA	NA	NA	NA
WP_003813585.1|2921671_2922247_-	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_003813586.1|2922349_2923087_-	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_010930216.1|2923154_2924792_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_019247742.1|2924899_2925655_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930214.1|2925642_2926605_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003813594.1|2926706_2927507_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930213.1|2927568_2929644_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_010930212.1|2929808_2932184_+	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930211.1|2932264_2933620_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2935098_2935821_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2935875_2936859_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2936988_2937939_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2937935_2938838_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2938925_2939684_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2939696_2940788_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2940885_2942313_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2942542_2943757_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2943802_2946673_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2949083_2949572_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2949697_2952394_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2952548_2954831_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2955005_2955629_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2955727_2956678_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2956724_2957279_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2957346_2958192_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2958261_2959230_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2959229_2960093_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2962925_2966852_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2967587_2970818_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2971099_2971927_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2971960_2972656_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2972648_2973929_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2973938_2974916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2974897_2976598_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2976700_2977804_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2977834_2978590_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2978596_2980117_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2980159_2980462_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2980458_2981091_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2981169_2983035_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2983031_2983826_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2983854_2984970_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2985874_2986753_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2986752_2987577_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2987744_2988695_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2988907_2991757_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2991738_2992467_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2992607_2994071_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2994067_2994439_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2994456_2995770_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2995806_2996265_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_155120815.1|2996219_2996360_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996377_2997328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2997426_2998377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2998373_2999387_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2999526_3000513_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|3000871_3001579_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|3002159_3003110_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|3003261_3003864_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|3003882_3004515_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|3004559_3004811_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|3004752_3006639_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_010930173.1|3006657_3007500_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_003819875.1|3007496_3008855_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_003809629.1|3009075_3009870_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930172.1|3010100_3011594_-	exopolyphosphatase	NA	NA	NA	NA	NA
WP_010930171.1|3011829_3013911_+	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_014486066.1|3014105_3015146_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930169.1|3015280_3016297_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_003809638.1|3016318_3017176_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930167.1|3017220_3017997_+	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_154698393.1|3018209_3018347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3018364_3019315_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|3019341_3019806_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|3021012_3023301_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|3023417_3024290_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|3024332_3025487_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|3025521_3026352_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|3026435_3027980_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|3028022_3028382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|3028383_3028797_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|3028837_3029155_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|3029239_3029956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|3030219_3031641_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_019248433.1|3031707_3034455_-	pertactin autotransporter	NA	NA	NA	NA	NA
WP_023853536.1|3034787_3035804_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|3036139_3036781_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|3036871_3038308_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3038465_3039539_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3039535_3040672_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3040816_3041161_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3041227_3043108_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3043157_3044093_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010929632.1|3044425_3045442_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3046379_3047807_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3047803_3048826_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3048815_3049289_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3049429_3050317_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3050313_3051957_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3051953_3053003_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3053791_3054808_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3054907_3055540_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3055548_3055938_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3055990_3057043_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_010930145.1|3057906_3059613_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_003811919.1|3059686_3060187_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3060201_3062259_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3062285_3062579_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3062680_3063628_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3063640_3064516_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3064636_3065197_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3065231_3065555_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3065990_3066728_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3067026_3067977_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	3076187	3138336	4110589	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3076187_3077321_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3077424_3078066_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3078220_3080569_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3080565_3081504_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3081529_3082720_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3082716_3083490_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3083519_3084713_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3084830_3085841_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3085858_3087895_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3088089_3088830_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|3088928_3089879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3089977_3090928_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3090970_3092146_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3092367_3094158_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3094170_3095832_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3095844_3098550_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3098842_3100597_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3100593_3101220_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3101216_3102068_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3102143_3104258_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3104444_3105059_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3105204_3105456_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3105525_3106908_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3106904_3110084_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_077069039.1|3110891_3111809_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3111860_3112592_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3112651_3113224_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3114732_3115749_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3115886_3116936_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3117040_3117991_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3118086_3118812_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3119022_3119403_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3119708_3120581_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3120588_3120969_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3121122_3122397_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3123884_3124793_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3125590_3126655_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3128485_3129487_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3129709_3130351_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3130433_3132260_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3132503_3133433_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3133432_3134182_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3134253_3135168_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3135187_3136333_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3136393_3137305_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3137385_3138336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	3157758	3212888	4110589	transposase	Bacillus_phage(28.57%)	48	NA	NA
WP_005012808.1|3157758_3158709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3158838_3159231_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3159507_3160419_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3160543_3161518_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3161514_3162465_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3162563_3163649_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3163746_3164157_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3164772_3166686_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3166821_3169434_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3169435_3170170_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3170333_3171515_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3171511_3171724_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3171720_3172701_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3172746_3173574_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3173723_3175538_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3175592_3175976_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3175972_3176923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3177035_3177287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3177792_3178911_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3179030_3179243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3179402_3179624_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3179676_3180627_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3181803_3183174_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3183206_3183998_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3184010_3185066_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3185091_3185967_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3186072_3186321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3186355_3187810_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3187806_3188328_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3188356_3189709_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3189932_3192821_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3194965_3196267_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3196281_3196998_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3197279_3197960_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3197971_3198139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3198247_3198394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3198487_3199147_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3199545_3201378_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010929591.1|3201374_3202325_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3203488_3205204_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3205214_3205706_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3205778_3206795_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3206962_3207742_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3207760_3208288_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3208581_3208851_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3208941_3211101_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3211221_3211941_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3211937_3212888_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	3293948	3367110	4110589	transposase	Klosneuvirus(16.67%)	56	NA	NA
WP_041337087.1|3293948_3294899_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3294895_3295915_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3295924_3298633_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3298780_3299437_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3299535_3300486_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998705.1|3300633_3301527_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_010930013.1|3301726_3303421_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010930012.1|3303455_3304382_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930011.1|3304450_3305548_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818996.1|3305566_3306430_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.9	9.6e-34
WP_010930010.1|3306441_3307224_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_004566042.1|3307220_3308339_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010930009.1|3308335_3309868_+	acyl--CoA ligase	NA	NA	NA	NA	NA
WP_003818991.1|3309908_3310916_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_023999677.1|3311060_3311783_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930007.1|3311798_3312821_-	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930006.1|3313137_3313872_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930005.1|3313956_3315702_+	acetolactate synthase	NA	NA	NA	NA	NA
WP_010930004.1|3315698_3316451_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930003.1|3316495_3317452_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818983.1|3317540_3318107_+	membrane protein	NA	NA	NA	NA	NA
WP_010930002.1|3318114_3318975_-	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_020699739.1|3319004_3319733_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.4	3.4e-32
WP_003807497.1|3319764_3320448_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930000.1|3321285_3322200_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929999.1|3322264_3323173_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929998.1|3323263_3324688_-	TolC family protein	NA	NA	NA	NA	NA
WP_010929997.1|3324689_3326012_-	cyclolysin T1SS periplasmic adaptor subunit CyaD	NA	NA	NA	NA	NA
WP_010929996.1|3326008_3328147_-	cyclolysin T1SS permease/ATPase CyaB	NA	W8CYL7	Bacillus_phage	29.2	2.7e-45
WP_010929995.1|3328224_3333345_-	bifunctional adenylate cyclase toxin/hemolysin CyaA	NA	NA	NA	NA	NA
WP_010929994.1|3333823_3334381_+	cyclolysin-activating lysine-acyltransferase	NA	NA	NA	NA	NA
WP_010929993.1|3334396_3335878_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929992.1|3338048_3339386_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929991.1|3339420_3341418_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929990.1|3341435_3343484_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010929989.1|3343614_3344481_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929988.1|3344749_3345715_-	octaprenyl diphosphate synthase	NA	NA	NA	NA	NA
WP_010929987.1|3345829_3346978_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_003807462.1|3347402_3347714_+	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_003807460.1|3347747_3348008_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_003807459.1|3348157_3349291_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_003807457.1|3349361_3350498_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	44.8	5.8e-63
WP_010925762.1|3350663_3351458_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003807452.1|3351520_3351964_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3352079_3353030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3353131_3353560_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3353632_3355828_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3356049_3357000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3356959_3357484_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3357615_3358587_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3358706_3361151_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3361166_3361757_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3362000_3362951_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3363108_3364374_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3364407_3365505_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3366159_3367110_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	3378397	3479559	4110589	tail,tRNA,protease,terminase,transposase	uncultured_Caudovirales_phage(14.29%)	109	NA	NA
WP_005012067.1|3378397_3379348_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3380079_3380457_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3380441_3381143_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3381286_3381979_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3381978_3383082_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3383191_3385564_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3385560_3387120_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3387144_3387942_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3387973_3389119_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3389223_3390666_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3390668_3391898_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3394035_3394986_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247922.1|3396115_3396673_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247923.1|3396648_3396999_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814657.1|3397167_3397962_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_010931416.1|3397958_3399008_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814652.1|3399007_3399697_-	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_003814650.1|3399783_3400281_-	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_010931417.1|3400312_3401629_-	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_010931418.1|3401645_3402620_-	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_003814643.1|3402656_3403115_-	protein TolR	NA	NA	NA	NA	NA
WP_003814641.1|3403114_3403795_-	protein TolQ	NA	NA	NA	NA	NA
WP_010931419.1|3403797_3404226_-	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814636.1|3404278_3406009_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3406074_3406647_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3406627_3407314_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3407669_3408341_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3408669_3408891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3408890_3409172_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3409168_3409684_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3409683_3410235_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3410213_3410456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3410460_3411273_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3411272_3411536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3411576_3411774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3411754_3412171_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3412175_3416132_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3416124_3416514_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3416510_3417044_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3417111_3417471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3417480_3420093_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3420118_3420409_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3420426_3420756_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3420765_3421284_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3421538_3422039_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3422046_3422469_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3422465_3422864_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3422860_3423256_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3423255_3423456_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3423457_3423940_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3424002_3424254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3424928_3425879_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3426307_3426910_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3427032_3427275_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3427280_3428336_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3428364_3429783_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3429785_3431063_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3431049_3431535_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3432174_3433125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853183.1|3433142_3433364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_161633094.1|3433381_3434071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3434063_3434315_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3434869_3435481_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3435552_3435759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3436010_3436961_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248926.1|3437059_3438133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931475.1|3438300_3439095_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010925795.1|3439134_3439659_-	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931474.1|3439651_3441394_-	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010931473.1|3441603_3442362_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931472.1|3442364_3443072_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931471.1|3443088_3443970_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019247734.1|3443980_3444739_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_019248554.1|3444707_3445463_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931468.1|3445532_3446951_+	amidase	NA	NA	NA	NA	NA
WP_003819076.1|3446972_3447623_-	carbonic anhydrase	NA	NA	NA	NA	NA
WP_033446132.1|3447756_3448092_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_010930800.1|3448180_3449131_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3449207_3451028_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3451032_3452106_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3452228_3453197_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3453270_3454182_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3454200_3454773_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3454853_3455402_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3455401_3456991_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3457060_3457300_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3457340_3458366_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3458431_3459613_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3459709_3460162_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3460171_3461512_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3461828_3462866_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3463247_3463607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3463690_3464632_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3464706_3465657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3465755_3466706_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3466999_3468094_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3468175_3469057_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3469078_3469918_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3469993_3471511_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3471607_3472708_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3472724_3473147_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3473169_3473382_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3473428_3474349_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3474531_3475281_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3475283_3475613_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3475819_3477253_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3477264_3477648_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3477709_3478510_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3478608_3479559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	3640228	3695202	4110589	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3640228_3641179_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3641295_3642363_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3642438_3645567_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3646074_3647040_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3647042_3647714_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3647870_3648830_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3648837_3649500_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3649496_3650447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3650568_3651822_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3651799_3652762_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3652893_3653388_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3653387_3654620_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3655365_3655647_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3655633_3656620_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3656763_3657168_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3657309_3660696_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3660726_3662190_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3662210_3663827_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3663912_3664572_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3664601_3665042_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3665552_3665756_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3665931_3666837_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3666935_3667886_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|3667984_3668935_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3670716_3671910_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3671975_3673004_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3673030_3674203_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3674328_3675306_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3675316_3676288_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3676354_3677140_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3677132_3678365_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3678560_3679316_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3679426_3679945_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3681733_3683134_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3683233_3683578_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3683666_3684137_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3684547_3684946_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_077069038.1|3685077_3686028_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3688472_3689207_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3689616_3689796_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3689986_3691300_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3691315_3692827_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3692823_3694029_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3694224_3695202_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	3785015	3839210	4110589	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	54	NA	NA
WP_005013747.1|3785015_3785966_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3786088_3786817_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3786913_3788092_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3788088_3788922_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3788958_3789699_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3789818_3790994_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3790990_3791944_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3791957_3792359_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3792351_3792957_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3793044_3793209_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3793325_3794174_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3794170_3794824_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3794840_3796124_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3796363_3797989_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3798082_3798484_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3798508_3798943_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3798944_3800594_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3800634_3801804_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3801806_3802670_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3806033_3806738_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3806731_3807526_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3807522_3808488_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3808491_3809412_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3809508_3810672_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3810894_3811785_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3811788_3812292_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3812334_3813333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3813329_3814280_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3814368_3814656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3814847_3815798_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3815857_3816418_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3817920_3818802_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3818915_3820118_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3820246_3822106_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3822183_3822993_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3823063_3824065_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3824096_3824957_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3825156_3826161_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3826157_3827744_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3827752_3828679_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3828701_3829328_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3829426_3830377_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3830373_3831510_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3831563_3832340_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3832364_3832823_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3832962_3833604_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3833668_3835051_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3835070_3835925_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3836083_3836695_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3836704_3837154_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3837672_3837813_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3837820_3837982_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_173651708.1|3838095_3838242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3838259_3839210_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	3849826	3910714	4110589	transposase,protease,tRNA	uncultured_Caudovirales_phage(40.0%)	50	NA	NA
WP_005012067.1|3849826_3850777_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3851507_3852488_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3852501_3853626_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3853633_3855388_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3855494_3856394_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3856458_3857442_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3857577_3858558_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3858574_3859966_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3860117_3860654_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3860584_3861970_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3862112_3862751_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_003814337.1|3864722_3865664_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3865769_3866819_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3867071_3867773_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3867769_3868468_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3868468_3869824_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3869820_3870312_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3870330_3871287_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3872697_3874800_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3874970_3876014_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3876057_3876801_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3877822_3878233_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3879182_3879980_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3880078_3881029_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3881025_3881976_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3882062_3883013_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3883127_3884129_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3884219_3884786_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3885104_3887018_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3887059_3888490_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3888602_3890015_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3890031_3890727_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3890945_3891896_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3891920_3892820_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3892974_3893523_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3893561_3894281_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3894352_3897295_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3897888_3900684_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3901141_3902074_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3902185_3903535_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3903566_3904292_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3904342_3905194_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3905323_3906010_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3906009_3906654_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3906710_3906986_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3907011_3907308_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3907353_3908133_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3908138_3909179_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3909283_3909607_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3909763_3910714_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011204	Bordetella pertussis strain I752 chromosome, complete genome	4110589	4032760	4086192	4110589	transposase	Planktothrix_phage(40.0%)	46	NA	NA
WP_010931661.1|4032760_4033711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4033880_4035107_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4035306_4036173_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4036165_4037128_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4037228_4038179_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4038277_4039228_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4039326_4040277_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4040273_4041767_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4041763_4044871_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4044867_4047936_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4047932_4049183_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4049363_4050125_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4050157_4050808_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4050810_4051650_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4051890_4052634_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4052716_4053064_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4053161_4054004_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4054048_4054936_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4054962_4055151_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4055248_4056706_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4056692_4058219_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4058237_4058705_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4058704_4059727_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4059847_4060567_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4060642_4061743_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4061744_4062935_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4063054_4064071_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4064389_4065061_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4065057_4065966_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4066177_4066825_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4070676_4071753_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4071763_4072573_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4072662_4073436_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4073436_4073601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930363.1|4073618_4074569_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4074457_4075480_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4075469_4076624_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4076663_4078076_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4078200_4079067_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4079068_4079893_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4079889_4080651_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4080731_4081418_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4081591_4082599_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4082595_4083375_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4083432_4084695_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4085241_4086192_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
