The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	27282	70035	4106407	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45199_45748_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45719_45956_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46083_46977_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48146_49394_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49390_50005_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50140_51091_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51133_52390_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53621_54356_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54361_54952_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54976_55666_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55662_56424_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56503_57403_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57496_58447_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59247_60474_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60473_60887_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61076_62018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62441_63416_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63472_64054_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64066_64369_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64487_65546_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65580_66852_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67481_68663_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|69084_70035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	77633	136107	4106407	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77633_78584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78658_79603_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79599_81474_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82821_83526_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83522_84695_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84890_85484_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85480_86713_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_010929612.1|86730_87990_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88013_89102_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89109_90210_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90213_90789_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90792_91845_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91975_92983_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92984_94271_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94287_94443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94467_95271_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95267_96134_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96208_97339_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97338_98178_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99110_99713_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99742_100396_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100528_101785_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101832_102732_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102807_103083_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103090_103753_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103814_104816_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104830_105379_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105436_106333_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106329_107391_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107426_108377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109276_110470_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110551_111181_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111242_111926_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111935_113618_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113905_114253_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114343_114661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114943_115960_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116035_116836_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116832_117708_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117718_119011_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119053_120094_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120199_121021_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121121_122072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122170_123076_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123072_123906_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124742_125753_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125749_126139_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127032_128286_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128376_130077_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130503_131151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131149_132589_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132681_132984_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133011_133890_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135156_136107_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	164892	225403	4106407	protease,tRNA,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	233335	286923	4106407	protease,tRNA,transposase	Bacillus_phage(25.0%)	47	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077069018.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	390856	448365	4106407	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	589370	650561	4106407	protease,transposase	uncultured_Mediterranean_phage(40.0%)	55	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590817_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592704_593196_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593214_594288_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594334_595438_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595513_596134_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596154_596664_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596718_596970_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597033_598167_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598174_598561_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598557_601077_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601505_601844_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601840_602347_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602408_603209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603319_604261_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604354_605890_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607569_609420_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609423_610257_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610256_611198_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611449_612421_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612562_614851_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615157_616066_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616120_617086_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617160_618822_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618893_619604_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|619752_620703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621401_621785_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621842_622445_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622462_622864_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622997_623891_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623887_624469_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625263_625998_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626038_627088_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627235_627814_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628200_629178_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629271_633666_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633866_634715_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634873_635686_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635741_636692_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636790_637591_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637652_638036_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638047_639481_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639687_640017_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640019_640769_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640951_641872_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641918_642131_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642153_642576_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642592_643693_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643789_645307_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645382_646222_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646243_647125_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647206_648301_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648594_649545_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649619_650561_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	655885	702076	4106407	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(18.18%)	50	NA	NA
WP_023995141.1|655885_656911_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656951_657191_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657260_658850_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658849_659398_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659478_660051_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660069_660981_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661054_662023_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662145_663219_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663223_665044_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665120_666071_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666159_666495_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666628_667279_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667300_668719_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668788_669544_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669512_670271_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670281_671163_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671179_671887_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671889_672648_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672857_674600_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674592_675117_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675156_675951_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676118_677192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677290_678241_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678492_678699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678770_679382_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679936_680188_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680180_680870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681126_682077_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682716_683202_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683188_684466_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684468_685887_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685915_686971_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686976_687219_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687341_687944_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688372_689323_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689997_690249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690311_690794_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690795_690996_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690995_691391_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691387_691786_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691782_692205_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692212_692713_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692967_693486_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693495_693825_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693842_694133_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694158_696771_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696780_697140_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697207_697741_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697737_698127_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698119_702076_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	708242	763221	4106407	tRNA,transposase	Planktothrix_phage(50.0%)	47	NA	NA
WP_003814636.1|708242_709973_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710025_710454_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710456_711137_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711136_711595_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711631_712606_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712622_713939_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713970_714468_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714554_715244_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715243_716293_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716289_717084_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717252_717603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717578_718136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719265_720216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722353_723583_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723585_725028_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725132_726278_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726309_727107_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727131_728691_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728687_731060_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731169_732273_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732272_732965_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733108_733810_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733794_734172_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734903_735854_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|761740_762169_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	814814	886827	4106407	holin,transposase	Acinetobacter_phage(20.0%)	60	NA	NA
WP_010931070.1|814814_815765_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930050.1|815863_816520_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930049.1|816667_819376_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_003813068.1|819385_820405_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_041337087.1|820401_821352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813893.1|821450_821939_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_003813895.1|821935_822619_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010926959.1|822648_826104_+	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_010930046.1|826139_827000_+	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010930045.1|827128_828046_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930044.1|828183_829164_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813904.1|829223_831014_+	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930042.1|831010_831787_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930041.1|831796_832315_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003813909.1|832427_834698_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930039.1|834909_837141_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813915.1|837441_837771_-	DUF2818 family protein	NA	NA	NA	NA	NA
WP_019248505.1|837787_839272_-	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_019247436.1|839282_840785_-	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_010930037.1|840781_842794_-	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_003813920.1|842811_843120_-	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_003813921.1|843116_843764_-	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813924.1|843781_844270_-	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813926.1|844291_845365_-	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_010930036.1|845364_847692_-	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813930.1|847707_849075_-	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_003813932.1|849071_849566_-	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_010930035.1|849611_850868_-	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_010926963.1|850870_851494_-	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_003813941.1|851568_852045_-	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_003813943.1|852081_852441_-	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_010930034.1|852629_853787_-	porin	NA	NA	NA	NA	NA
WP_010929591.1|854099_855050_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|855067_855622_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|855623_856058_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|856054_856489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|856472_857276_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|857292_858108_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|858104_858920_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|859066_859768_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|859795_861754_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|861836_862787_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|863007_863676_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|863799_864906_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|864918_868032_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|868028_869522_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|869536_870208_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|870251_870746_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|870886_871534_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|871637_873686_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|873682_875695_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|875720_877055_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|877163_878156_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|878222_880307_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|880331_881303_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|881431_882463_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930021.1|882466_883618_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|883788_884712_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|884789_885614_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	894461	957542	4106407	holin,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_010930018.1|894461_896693_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|916906_917053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|917161_917329_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|953782_954757_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|954881_955793_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|956069_956462_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|956591_957542_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	976964	1047253	4106407	transposase	Streptococcus_phage(14.29%)	56	NA	NA
WP_005012067.1|976964_977915_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486062.1|977995_978907_+	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_010930108.1|978967_980113_-	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_003821521.1|980132_981047_+	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930110.1|981118_981868_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_010930111.1|981867_982797_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_003821527.1|983040_984867_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003813333.1|984949_985591_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_170954292.1|985813_986815_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930112.1|988651_989716_+	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_010930113.1|990513_991422_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_023852693.1|992909_994184_+	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_023852686.1|994337_994718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014905652.1|994725_995598_-	EamA family transporter	NA	NA	NA	NA	NA
WP_003813315.1|995903_996284_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_003813314.1|996494_997220_+	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998370_999420_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999557_1000574_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002082_1002655_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002714_1003446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010930121.1|1005244_1008424_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008420_1009803_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009872_1010124_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010269_1010884_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1011070_1013185_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013260_1014112_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014108_1014735_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014731_1016486_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016778_1019484_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019496_1021158_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021170_1022961_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023182_1024358_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024400_1025351_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025449_1026190_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026384_1028421_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028438_1029449_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029566_1030760_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030789_1031563_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031559_1032750_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032775_1033714_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033710_1036059_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036213_1036855_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1036958_1038092_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1038184_1038337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038368_1038917_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1038935_1039421_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039598_1040537_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040539_1040857_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040902_1041847_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043527_1044178_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044231_1044567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044563_1045424_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045440_1045722_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045795_1046059_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046302_1047253_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1059471	1117902	4106407	protease,tRNA,holin,transposase	uncultured_Mediterranean_phage(37.5%)	48	NA	NA
WP_010931363.1|1059471_1060488_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930148.1|1061276_1062326_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062322_1063966_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063962_1064850_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064990_1065464_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065453_1066476_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066472_1067900_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068837_1069854_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1070186_1071122_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1071171_1073052_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1073118_1073463_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1073607_1074744_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074740_1075814_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075971_1077408_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077498_1078140_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078475_1079492_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081534_1082485_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083687_1085109_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085372_1086089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086173_1086491_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086531_1086945_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086946_1087306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087348_1088893_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088976_1089807_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089841_1090996_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091038_1091911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092027_1094316_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095522_1095987_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1096013_1096964_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096981_1097119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097331_1098108_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098152_1099010_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099031_1100048_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100182_1101223_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101417_1103499_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103734_1105228_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105458_1106253_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106473_1107832_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107828_1108671_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108689_1110576_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110517_1110769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110813_1111446_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111464_1112067_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112218_1113169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113749_1114457_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114815_1115802_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115941_1116955_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116951_1117902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1157601	1219772	4106407	tRNA,transposase	Erysipelothrix_phage(33.33%)	49	NA	NA
WP_010930198.1|1157601_1158552_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1158650_1159274_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1159447_1161730_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161884_1164581_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164706_1165195_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167605_1170476_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170521_1171736_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171965_1173393_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173490_1174582_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174594_1175353_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175440_1176343_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176339_1177290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177419_1178403_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178457_1179180_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180658_1182014_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182094_1184470_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1184634_1186710_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1186771_1187572_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187673_1188636_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188623_1189379_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189486_1191124_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191191_1191929_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192031_1192607_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192779_1193316_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1193318_1193663_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193678_1194524_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1194562_1195942_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1196019_1196901_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196999_1197950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197946_1198357_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198464_1199319_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199311_1200274_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200319_1201444_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201549_1202428_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202552_1203332_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203485_1204907_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205341_1207039_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207265_1208207_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208533_1209280_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209287_1210214_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210335_1211253_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211292_1212246_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212270_1212849_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214522_1215131_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215208_1215562_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215645_1216635_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_076879566.1|1216837_1217788_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217874_1218825_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218821_1219772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1270700	1327911	4106407	transposase	Klosneuvirus(16.67%)	48	NA	NA
WP_010931070.1|1270700_1271651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275397_1276009_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276231_1277692_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277788_1279381_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279734_1279992_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279993_1281334_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281429_1282119_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282131_1283562_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285286_1286108_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286118_1287690_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287718_1288696_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288722_1289526_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289522_1290317_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290324_1291560_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1291552_1291987_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1292736_1293687_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294308_1296036_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296147_1297506_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1297798_1298749_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298789_1299860_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299882_1300761_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300932_1301904_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302066_1302909_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303070_1303751_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1303744_1304914_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1304910_1305942_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1305985_1307227_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1307261_1308794_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308874_1309498_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309528_1310140_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310175_1310646_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311077_1312082_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312118_1313633_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313636_1314596_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314624_1315428_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315429_1317064_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317147_1318209_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318407_1318677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318680_1319205_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319620_1320571_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320567_1321602_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321710_1322349_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322643_1322871_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322993_1323707_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323951_1324902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1325005_1325287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325401_1326850_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326960_1327911_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1418144	1470297	4106407	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1418144_1419095_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1419261_1419615_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1419627_1419990_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1420031_1420457_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1420659_1421916_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1422114_1423095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1423244_1424486_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1424584_1425535_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1425543_1426239_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1429060_1429660_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1429670_1431836_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1431859_1433644_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1433643_1433733_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1434427_1434700_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1434699_1436766_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1436762_1437713_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1437811_1438762_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1438877_1439210_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1439206_1439893_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1439879_1440839_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1440880_1443241_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1443240_1443873_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1443974_1445315_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1445361_1446717_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1446842_1447487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1447431_1447749_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1448021_1448537_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1448630_1448792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1448807_1449563_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1449901_1450108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1450115_1450775_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1451069_1453274_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1453384_1454608_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1454730_1455705_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1455772_1456966_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1456980_1457781_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1457777_1459634_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1459630_1460236_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1460254_1461640_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1462365_1463592_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1463680_1464463_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1464561_1465512_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1465538_1466312_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1466323_1467565_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1469346_1470297_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1514222	1582308	4106407	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1514222_1514711_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1514828_1515407_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1515512_1515881_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1515979_1516930_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1516936_1518049_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1518735_1519938_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1519973_1520120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1520141_1522802_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1522814_1526219_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1526886_1529112_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1529158_1529485_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1529535_1530144_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1530242_1531193_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1531262_1532027_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1532023_1532623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1532726_1533578_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1533637_1534264_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1534260_1535211_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1535309_1536422_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1536411_1537413_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1537518_1539030_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1539026_1540331_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1540442_1541003_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1541270_1541825_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1542280_1542496_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1542750_1545348_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1545344_1546532_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1547190_1547805_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1547893_1549021_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1549032_1549938_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1550830_1551781_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1551962_1552715_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1552783_1553443_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1553439_1554168_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1554180_1556460_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1556484_1556688_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1556729_1557362_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1557497_1558415_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1558411_1559125_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1559362_1560133_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1560137_1560737_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1560981_1562472_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1562530_1562815_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1562952_1563108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1563380_1564307_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1564443_1565184_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1565350_1566727_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1566908_1567814_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1569465_1571268_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1571394_1572036_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1572134_1573085_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1573106_1574327_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1574512_1575925_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1575988_1577056_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1577055_1578543_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1578552_1579497_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1579656_1580355_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1580432_1581338_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1581357_1582308_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1618257	1673848	4106407	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1618257_1619208_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1619266_1620040_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1620032_1621589_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1621585_1622536_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1623862_1624465_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1624704_1625406_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1625399_1626182_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1626366_1627317_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1627415_1628153_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1628342_1629101_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1629147_1630137_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1630314_1631283_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1632822_1633791_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1633799_1634741_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1635214_1636225_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1636215_1637730_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1637726_1639073_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1639075_1640110_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1640159_1641785_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1642337_1643288_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1643392_1644340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1644393_1646208_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1646200_1646875_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1647004_1650079_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1650092_1650392_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1650706_1651330_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1651573_1652443_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1652420_1653365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1653450_1654377_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1654489_1655269_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1655259_1656456_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1656486_1657437_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1657658_1658348_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1658412_1659168_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1659219_1660212_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1660221_1661175_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1661290_1662253_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1663654_1664083_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1664079_1665030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1665323_1666061_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1666484_1667672_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1667675_1668056_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1669775_1670747_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1670760_1671474_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1671478_1672396_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1672502_1672799_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1672897_1673848_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1831615	1890885	4106407	protease,tRNA,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1831615_1832566_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1832690_1833500_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1833700_1834651_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1835924_1837142_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1838198_1839101_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1839177_1840050_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1840180_1840549_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1840606_1841653_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1841848_1843105_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1843109_1844447_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1844596_1845553_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1845655_1846588_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1846703_1847024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1847016_1847376_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1847423_1848998_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1849050_1849995_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1850012_1850843_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1850835_1852470_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1852466_1853822_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1854728_1856306_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1856309_1857584_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1857681_1858056_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1859771_1860905_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1860942_1861548_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1861544_1862363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1862434_1865059_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1865045_1865300_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1865366_1865948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1866251_1866512_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1866677_1867301_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1867300_1868074_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1868070_1869279_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1869304_1869778_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1869851_1870802_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1870900_1871851_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1871949_1873299_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1874064_1874820_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1874912_1877795_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1878117_1878543_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1878570_1879719_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1879715_1880222_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1880228_1881524_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1881582_1882869_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1882870_1883509_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1883511_1884672_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1884698_1886054_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1886057_1887128_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1887266_1887503_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1887590_1888697_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1888662_1889967_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1889985_1890885_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1901125	1945448	4106407	transposase	Staphylococcus_phage(25.0%)	44	NA	NA
WP_005013747.1|1901125_1902076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1902174_1903125_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1903324_1904410_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1904425_1905187_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1905183_1906143_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1906205_1906706_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1906738_1907482_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1907577_1907817_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1907830_1907983_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1908068_1909559_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1909650_1910589_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1910585_1910762_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1910764_1911427_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1913048_1913192_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1913188_1914163_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|1914329_1915280_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1915276_1916551_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1916654_1917848_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1917844_1918498_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1918494_1919931_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1919918_1920278_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1921092_1921233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1921250_1922201_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1923246_1925112_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1925369_1926890_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1926977_1927628_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1928576_1929872_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1929893_1930778_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1930876_1931752_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1931741_1932098_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1932228_1933203_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1933332_1933512_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1933609_1934134_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1934144_1934981_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1935093_1935465_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1935461_1936013_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1936028_1937720_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1937768_1938449_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1938696_1939161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1939330_1940260_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1940272_1940920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1940993_1942811_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1942894_1943845_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1944497_1945448_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	1975221	2039590	4106407	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1975221_1976172_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1976393_1977344_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1977442_1978408_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1978545_1979445_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1982039_1983527_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1983537_1984734_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1984806_1986126_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1986122_1986998_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1987028_1988177_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1988194_1988509_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1988530_1989253_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1989252_1990071_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1990075_1990603_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1990608_1991865_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1992223_1993363_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1993440_1994313_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1995183_1996134_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1996093_1996729_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1997088_1998411_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1998729_1999551_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2000975_2001548_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2001587_2003417_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2003379_2004438_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2004475_2004937_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2005021_2005768_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2007258_2010489_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2010555_2011887_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2012139_2012514_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2012616_2013795_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2013805_2014396_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2014506_2015313_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2015338_2016133_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2017133_2018108_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2018266_2018779_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2018935_2019907_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2021651_2022458_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2022454_2023756_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2023706_2024471_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2024584_2025355_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2025439_2026627_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2026699_2027074_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2027174_2028437_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2028433_2029291_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2029463_2030465_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2030916_2031867_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2033382_2034582_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2034950_2035187_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2035250_2035418_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2035531_2037337_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2037590_2038541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2038639_2039590_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	2171119	2220772	4106407	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2171119_2172070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2172168_2174163_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2174222_2175188_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2175177_2178039_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2178041_2178548_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2178652_2179861_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2179862_2180801_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2180962_2181436_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2181432_2182383_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2182493_2182934_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2183062_2184292_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2184330_2185152_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2185205_2186357_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2186448_2186937_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2189487_2192037_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2192107_2194681_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2194946_2195147_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2195178_2195340_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2195397_2195736_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2195884_2196835_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2197609_2198278_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2198259_2200275_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2200457_2201207_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2201219_2202083_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2202086_2203502_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2203635_2204364_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2204502_2204703_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2204878_2205277_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2205300_2206701_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2206819_2207572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2207860_2208460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2208564_2209344_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2209340_2210225_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2210242_2211022_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2211006_2211765_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2211890_2212538_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2212805_2213822_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2213919_2214960_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2215094_2216387_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2217746_2218130_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2218147_2218735_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2218772_2219723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2219821_2220772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	2477079	2535323	4106407	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2477079_2478030_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478509_2479166_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479180_2480848_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480850_2481480_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481691_2482786_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482930_2483743_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483746_2485450_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485500_2486631_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486817_2487894_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487975_2488626_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488640_2490044_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490327_2491146_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491142_2491847_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492746_2493862_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493895_2494270_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494292_2495450_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495462_2495696_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496330_2499300_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499314_2499524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499675_2500305_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500301_2502392_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502415_2503096_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503092_2503653_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503659_2504757_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504909_2505503_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505499_2506792_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506805_2507348_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507357_2508194_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508227_2509289_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509330_2510383_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510398_2510701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510842_2511793_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2511971_2513666_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513662_2514748_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514795_2515695_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515705_2516350_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517371_2520614_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520624_2521779_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2522005_2522968_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523066_2524017_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524115_2525066_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525075_2525765_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525824_2526262_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526307_2527201_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527248_2528421_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528417_2529572_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2529768_2530119_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530108_2530543_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530559_2531510_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531657_2532125_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532105_2533263_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533328_2534255_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534372_2535323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	2577601	2644101	4106407	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577601_2578552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578921_2579494_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579496_2580507_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580499_2581000_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2581010_2581352_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581363_2582155_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582171_2582441_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582463_2583252_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583298_2584315_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584531_2585974_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586152_2587772_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2587892_2589713_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2589791_2591324_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591357_2593004_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593073_2594096_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594113_2595247_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595249_2595939_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595938_2596724_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596767_2597532_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597570_2598992_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599057_2599762_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599809_2600229_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600241_2600649_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600832_2601543_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601669_2601960_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601977_2602460_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606965_2608120_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608425_2609442_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609688_2610477_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610543_2611224_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611220_2611991_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612089_2613040_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613095_2614013_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614023_2615202_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615221_2616217_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617805_2618414_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618401_2619442_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619459_2620422_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620418_2621612_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621608_2622406_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622431_2623418_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623436_2625476_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625677_2626358_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626371_2627283_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627279_2627858_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627996_2628902_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628909_2632329_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632316_2634917_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635872_2636505_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636898_2637657_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637653_2638856_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639043_2639994_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640901_2642047_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642033_2642789_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642905_2643085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643150_2644101_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	2672216	2709628	4106407	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672216_2673167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673265_2674216_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674308_2674848_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674954_2675299_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675356_2676805_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676992_2677328_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678955_2680134_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680216_2680717_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680826_2681528_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2681539_2682004_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2682018_2682294_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682290_2683067_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683095_2683923_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684048_2684519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684645_2685539_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685586_2686768_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686780_2687596_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2687729_2688257_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688253_2688751_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688898_2689276_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689497_2690448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690546_2691158_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691392_2692520_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692630_2693719_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693771_2694623_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694642_2695524_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695700_2697014_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697224_2698058_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698054_2698636_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698989_2699940_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699955_2701071_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2701173_2702100_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702099_2703338_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703334_2704102_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704102_2704804_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704885_2705332_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2706221_2706860_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707628_2708579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708677_2709628_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	2808755	2863272	4106407	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808755_2809706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810034_2810640_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810693_2812007_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812081_2812552_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812551_2813340_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813350_2815003_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815090_2816041_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817202_2817709_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817705_2818470_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818485_2818770_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818834_2819824_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819995_2820925_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820896_2821583_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821616_2822162_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822206_2823472_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823468_2824371_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825552_2826497_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826591_2828109_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828150_2829779_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829886_2830768_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833880_2834255_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834279_2834618_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834661_2836296_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836334_2837681_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837788_2839210_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839279_2839864_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839966_2840917_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841051_2842158_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842168_2843266_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843410_2844616_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844622_2845144_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845140_2845632_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845628_2845880_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845860_2846346_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846481_2849943_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849960_2850845_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850854_2851286_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851532_2852036_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852113_2853514_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853588_2854464_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854460_2855468_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855935_2856241_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856331_2856922_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857112_2858129_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858320_2860657_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860739_2861174_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861272_2862223_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862321_2863272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	2871297	2928082	4106407	protease,transposase	uncultured_Mediterranean_phage(28.57%)	40	NA	NA
WP_005012067.1|2871297_2872248_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873954_2874221_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874928_2875267_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879819_2880422_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880518_2881808_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881865_2882597_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882593_2883397_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883393_2884482_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884478_2885408_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885556_2886702_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886723_2887674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931110.1|2888004_2891826_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891982_2892651_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892655_2894329_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894347_2895667_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895671_2897987_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898042_2900211_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900207_2905397_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905486_2905801_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906028_2906274_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906368_2906887_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906986_2908192_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908307_2909705_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909821_2910400_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910472_2911864_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912031_2912982_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913262_2913883_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913879_2914293_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914289_2915333_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915388_2915577_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915586_2916351_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916441_2917098_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917189_2917948_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917973_2919575_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919775_2920780_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920880_2921144_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921261_2922038_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922628_2923579_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925962_2927075_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927131_2928082_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	2958468	3002159	4106407	transposase	Planktothrix_phage(33.33%)	40	NA	NA
WP_005012067.1|2958468_2959419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852715.1|2959539_2960436_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962713_2964939_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965103_2966192_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966148_2966802_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966849_2967647_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968178_2969129_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969203_2970358_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970414_2971365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971463_2971769_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971797_2972232_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972233_2973478_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973474_2974185_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974199_2975111_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975473_2975878_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975874_2976333_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976339_2977248_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977244_2978111_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978097_2978925_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978935_2980063_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981140_2982379_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982420_2983683_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983689_2984442_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984493_2984679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984954_2985419_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985450_2986110_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986254_2988363_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988359_2989310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989413_2990034_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990125_2990878_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2992012_2993137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993182_2993551_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993792_2994743_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995778_2996321_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996518_2996689_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996706_2997657_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997653_2998619_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998688_2999525_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000037_3001147_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001208_3002159_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	3382107	3435848	4106407	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382107_3383058_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383462_3384107_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384131_3384716_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384816_3385434_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385436_3387152_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387148_3387457_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387473_3388091_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388135_3388438_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388538_3389393_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389580_3389805_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389974_3390247_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390664_3391072_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391441_3392236_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392336_3393572_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393640_3394657_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394668_3396045_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396041_3397238_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397234_3398773_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398769_3400029_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401969_3402920_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403686_3404781_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404773_3406108_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406061_3406745_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406770_3407934_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407930_3408932_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408931_3409804_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409800_3410550_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410546_3411338_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411334_3412474_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412749_3413535_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413568_3414351_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414354_3414744_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415883_3416747_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416782_3417871_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417867_3418818_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419171_3422150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423076_3423955_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425903_3426854_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426850_3427318_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427360_3428131_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428151_3428952_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428962_3430372_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430466_3431252_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431491_3432508_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432615_3433008_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433145_3433826_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433830_3434802_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434897_3435848_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	3442003	3501301	4106407	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3442003_3443767_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443878_3444757_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444869_3445685_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445688_3445940_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446024_3447041_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447371_3447593_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449953_3450871_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451368_3452577_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452656_3454228_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454345_3455281_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455469_3456414_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456981_3462699_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462704_3463832_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463887_3464514_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464785_3465802_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465897_3466608_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466604_3467594_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467689_3469321_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469323_3470061_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470216_3471089_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471357_3472578_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472574_3473234_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473305_3473938_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473967_3474486_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474496_3475606_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475652_3476507_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476508_3477411_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478633_3479584_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481338_3482328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482324_3482483_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482503_3483292_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483288_3484320_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484338_3484902_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484957_3486478_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486741_3487446_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487453_3488191_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488296_3488671_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488713_3490003_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489999_3491169_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491165_3492005_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492064_3493000_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3493012_3493963_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494061_3495024_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495055_3495415_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495539_3496442_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496443_3498216_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498250_3499027_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500350_3501301_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	3516239	3574312	4106407	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516239_3517190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517318_3518452_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518495_3519401_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519403_3521104_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521100_3522021_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522028_3523006_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523064_3524099_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526073_3526310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526436_3527300_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527388_3528210_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528289_3529027_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3529023_3530016_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530129_3530792_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530836_3531985_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534308_3535259_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535599_3536550_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536648_3537599_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537895_3538393_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538435_3540211_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540218_3541085_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541091_3541826_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542995_3543790_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544079_3544670_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544703_3546032_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546106_3547252_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547363_3548362_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548324_3548759_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550275_3551160_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551156_3552362_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552358_3553219_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553331_3555122_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555162_3555828_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555828_3556137_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556302_3557589_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3559022_3559973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561924_3563139_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563244_3564234_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564230_3564839_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564851_3565481_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565477_3566098_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566129_3566921_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567772_3568228_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568246_3569173_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569226_3570513_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571443_3572316_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572312_3573263_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573361_3574312_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011203	Bordetella pertussis strain I730 chromosome, complete genome	4106407	4028578	4082010	4106407	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4028578_4029529_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029698_4030925_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4031124_4031991_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031983_4032946_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4033046_4033997_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4034095_4035046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4035144_4036095_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4036091_4037585_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037581_4040689_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040685_4043754_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043750_4045001_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4045181_4045943_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045975_4046626_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046628_4047468_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047708_4048452_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048534_4048882_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048979_4049822_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049866_4050754_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050780_4050969_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4051066_4052524_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052510_4054037_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4054055_4054523_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054522_4055545_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055665_4056385_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056460_4057561_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057562_4058753_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058872_4059889_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4060207_4060879_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060875_4061784_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061995_4062643_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066494_4067571_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067581_4068391_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4068480_4069254_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4069436_4070387_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4070275_4071298_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4071287_4072442_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072481_4073894_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4074018_4074885_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074886_4075711_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075707_4076469_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076549_4077236_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4077409_4078417_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4078413_4079193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4079250_4080513_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4081059_4082010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
