The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	27282	70036	4108484	tRNA,transposase	Synechococcus_phage(50.0%)	42	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_023852754.1|43346_43646_-	DUF1974 domain-containing protein	NA	NA	NA	NA	NA
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	membrane protein	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010929596.1|60474_60894_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	77634	136108	4108484	tRNA,transposase	Planktothrix_phage(22.22%)	53	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	polysaccharide biosynthesis protein	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	DUF2837 family protein	NA	NA	NA	NA	NA
WP_003807104.1|83523_84630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	sugar transferase	NA	NA	NA	NA	NA
WP_023853419.1|85481_86669_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	NA	NA	NA	NA
WP_010929612.1|86731_87991_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_023853421.1|101866_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_010929591.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_023853394.1|132700_132985_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	164893	219510	4108484	tRNA,protease,transposase	Diachasmimorpha_longicaudata_entomopoxvirus(14.29%)	47	NA	NA
WP_005015810.1|164893_165844_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167287_168190_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168167_168797_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169079_170510_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170543_171173_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171221_172829_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172853_173537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173618_174095_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174301_175252_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176367_176895_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176986_177802_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177862_178597_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178634_180713_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180962_181235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181336_182422_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182425_184330_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184326_188001_+	DUF490 domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188061_188625_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188632_189055_-	glyoxalase	NA	NA	NA	NA	NA
WP_010929671.1|189082_189502_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA	NA
WP_077274090.1|189530_189977_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	29.4	1.2e-08
WP_003808391.1|190103_190601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190755_193026_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_019249381.1|193101_194307_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194405_195356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195458_196094_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196090_196984_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197378_198479_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198560_198935_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198994_201859_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202003_202744_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202813_204025_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204053_205022_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|205635_206586_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|206684_207635_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|207791_208115_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|208219_209260_-	cyclase	NA	NA	NA	NA	NA
WP_010929697.1|209265_210045_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|210090_210387_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|210412_210688_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|210744_211389_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|211388_212075_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_033446325.1|212273_213056_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|213106_213832_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|213863_215213_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|215324_216257_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|216714_219510_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
>prophage 4
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	225502	287973	4108484	tRNA,protease,transposase	Bacillus_phage(25.0%)	54	NA	NA
WP_005012808.1|225502_226453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818947.1|226671_227367_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247308.1|227383_228796_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010929684.1|228908_230339_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929683.1|230380_232294_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929682.1|232612_233179_+	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929681.1|233269_234271_+	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_005012067.1|234385_235336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|235422_236373_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|236369_237320_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|237418_238216_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|239165_239576_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA	NA
WP_003814358.1|240597_241341_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|241384_242428_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|242598_244701_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|246111_247068_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|247086_247578_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|247574_248930_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|248930_249629_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|249625_250327_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|250579_251629_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|251734_252676_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|252672_254562_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|254648_255287_+	membrane protein	NA	NA	NA	NA	NA
WP_019247543.1|255429_256815_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|256745_257282_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|257433_258825_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|258841_259822_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|259957_260941_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|261005_261905_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|262011_263766_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|263773_264898_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|264911_265892_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|266622_267573_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|268132_268678_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852659.1|268803_270381_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|270396_271551_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|271564_271690_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|271686_273438_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|273434_275114_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|275176_275725_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|276867_277146_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|278189_279140_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077068974.1|279126_279342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|279417_279579_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|280245_280695_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|280704_281316_-	stringent starvation protein A	NA	NA	NA	NA	NA
WP_010929720.1|281474_282323_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|282348_283731_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|283795_284437_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|284576_285035_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|285059_285836_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|285889_287026_+|protease	trypsin-like serine protease	protease	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005012067.1|287022_287973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	391906	449415	4108484	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|391906_392857_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|392993_393911_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|393907_394156_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|394152_395358_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|395430_396426_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|396448_397669_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|397665_398310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|400040_400850_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|401154_402108_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|402206_403190_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|403116_403818_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|403866_404637_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|404633_405812_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|405979_407686_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|407682_408579_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|408619_410209_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003807867.1|410258_411251_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|411319_411919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|412379_413360_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|413435_414386_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|414474_415389_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|415385_416045_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|416134_417058_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|417063_417519_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|417515_418619_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|418577_418847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010927086.1|418806_420426_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|420422_421481_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|421610_422105_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|422197_423175_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|423370_424576_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|424572_426084_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|426099_427413_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|427603_427783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|428192_428927_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|431371_432322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|432453_432852_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|433262_433733_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|433821_434166_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|434265_435666_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|437454_437973_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|438083_438839_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|439034_440267_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|440259_441045_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|441111_442083_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|442093_443071_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|443196_444369_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010929793.1|444395_445424_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|445489_446683_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|448464_449415_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	590420	651610	4108484	protease,transposase	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|590420_591371_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446133.1|591846_592737_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|592733_593555_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|593753_594245_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|594263_595337_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|595383_596487_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|596562_597183_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|597203_597713_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|597767_598019_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|598082_599216_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|599223_599610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931493.1|599606_602126_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|602554_602893_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|602889_603396_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|603457_604258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|604368_605310_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|605403_606939_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|608618_610469_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|610472_611306_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|611305_612247_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|612498_613470_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|613611_615900_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|616206_617115_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|617169_618135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|618209_619871_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|619942_620653_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|620619_620784_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|620801_621752_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|622450_622834_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|622891_623494_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|623511_623913_-	DoxX family protein	NA	NA	NA	NA	NA
WP_010931482.1|624028_624940_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|624936_625518_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|626312_627047_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|627087_628137_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|628284_628863_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|629249_630227_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|630320_634715_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|634915_635764_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|635922_636735_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|636790_637741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|637839_638640_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|638701_639085_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_033446148.1|639096_640449_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	2.1e-51
WP_003814188.1|640736_641066_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|641068_641818_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|642000_642921_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|642967_643180_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|643202_643625_+	SnoaL-like domain-containing protein	NA	NA	NA	NA	NA
WP_010931458.1|643641_644742_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|644838_646356_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|646431_647271_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_033446149.1|647292_648165_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|648255_649350_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|649643_650594_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|650668_651610_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	656934	703125	4108484	tRNA,tail,transposase,terminase	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|656934_657960_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|658000_658240_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|658309_659899_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|659898_660447_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|660527_661100_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|661118_662030_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|662103_663072_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|663194_664268_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|664272_666093_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_005015810.1|666169_667120_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|667208_667544_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|667677_668328_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|668349_669768_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|669837_670593_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|670561_671320_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|671330_672212_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|672228_672936_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|672938_673697_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|673906_675649_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|675641_676166_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|676205_677000_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|677167_678241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|678339_679290_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|679541_679748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|679819_680431_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|680985_681237_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_161633094.1|681229_681919_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|681936_682158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|682175_683126_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|683765_684251_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|684237_685515_+|terminase	terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|685517_686936_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|686964_688020_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|688025_688268_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|688390_688993_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|689421_690372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|691046_691298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|691360_691843_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_162096760.1|691856_692045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|692044_692440_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|692436_692835_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|692831_693254_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|693261_693762_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|694016_694535_+	hypothetical protein	NA	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|694544_694874_+	hypothetical protein	NA	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|694891_695182_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|695207_697820_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|697829_698189_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|698256_698790_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|698786_699176_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|699168_703125_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	709291	763221	4108484	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|709291_711022_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|711074_711503_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|711505_712186_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|712185_712644_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|712680_713655_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|713671_714988_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|715019_715517_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|715603_716293_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|716292_717342_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|717338_718133_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|718301_718652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|718627_719185_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|720314_721265_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|723402_724632_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|724634_726077_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|726181_727327_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|727358_728156_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|728180_729740_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|729736_732109_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|732218_733322_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|733321_734014_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|734157_734859_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|734843_735221_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|735952_736903_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|737062_737935_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|738275_738494_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|738533_739913_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|739954_741352_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|741391_743044_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|743047_743932_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|743931_744873_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|744951_746571_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|746737_747553_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|747620_748190_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|748190_749141_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|749795_750893_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|750926_752192_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|752349_753300_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|753543_754134_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|754149_756594_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|756713_757685_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|757816_758341_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|758300_759251_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|759472_761668_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_020699729.1|761740_762148_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|762270_763221_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	885810	953786	4108484	transposase	Bacillus_phage(33.33%)	56	NA	NA
WP_023994644.1|885810_886827_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|887023_888007_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|889605_890994_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|891024_892014_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|892124_893357_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|893638_894439_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|894461_896693_-	BCCT family transporter	NA	NA	NA	NA	NA
WP_010930017.1|897480_897927_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|897948_898695_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|898838_899816_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|900449_901061_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|901054_902272_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|902412_903363_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814000.1|903359_904079_-	lipoprotein	NA	NA	NA	NA	NA
WP_003821234.1|904199_906359_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814002.1|906449_906719_-	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_005019401.1|906807_907014_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814003.1|907012_907540_+	lipoprotein	NA	NA	NA	NA	NA
WP_003814004.1|907558_908338_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930015.1|908505_909522_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814006.1|909594_910086_-	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_003814007.1|910096_911812_-	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_005012067.1|912975_913926_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|913922_915755_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|916153_916813_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930054.1|917340_918021_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|918302_919019_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|919033_920335_-	phospholipase	NA	NA	NA	NA	NA
WP_029444137.1|922479_925368_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|925591_926944_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|926972_927494_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|927490_928945_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|928979_929228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|929333_930209_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|930234_931290_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|931302_932094_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|932126_933497_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|934673_935624_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|935676_935898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|936057_936270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|936389_937508_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810837.1|937604_937820_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810839.1|938013_938265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|938377_939328_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|939324_939708_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|939762_941577_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|941726_942554_+	oxidoreductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|942599_943580_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|943576_943789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|943785_944967_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|945130_945865_+	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|945866_948479_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|948614_950528_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|951143_951554_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|951651_952737_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|952835_953786_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	997315	1069832	4108484	tRNA,transposase	Enterococcus_phage(14.29%)	60	NA	NA
WP_005012067.1|997315_998266_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|998370_999420_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|999557_1000574_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1002082_1002655_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1002714_1003446_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1003497_1004415_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1005222_1008402_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1008398_1009781_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1009850_1010102_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1010247_1010862_-	SCO family protein	NA	NA	NA	NA	NA
WP_010930125.1|1011048_1013109_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1013238_1014090_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1014086_1014713_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1014709_1016464_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1016756_1019462_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1019474_1021136_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1021148_1022939_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1023160_1024336_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1024378_1025329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1025427_1026168_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1026362_1028399_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1028416_1029427_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1029544_1030738_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1030767_1031541_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1031537_1032728_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1032753_1033692_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1033688_1036037_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1036191_1036833_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023994624.1|1038162_1038315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1038346_1038895_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_003819814.1|1038913_1039399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1039576_1040515_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1040517_1040835_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1040880_1041825_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1043505_1044156_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1044209_1044545_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1044541_1045402_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1045418_1045700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1045773_1046037_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1046280_1047231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1047529_1048267_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1048702_1049026_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1049060_1049621_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1049741_1050617_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1050629_1051577_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1051678_1051972_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1051998_1054056_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1054070_1054571_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1054644_1056351_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1057214_1058267_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1058319_1058709_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1058717_1059350_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1059449_1060466_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003819773.1|1061296_1062304_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_014486064.1|1062300_1063944_-	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930149.1|1063940_1064828_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003809396.1|1064968_1065442_-	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930151.1|1065431_1066454_-	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_015041211.1|1066450_1067878_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1068815_1069832_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1073585	1135661	4108484	tRNA,holin,transposase	Catovirus(20.0%)	53	NA	NA
WP_010930155.1|1073585_1074722_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1074718_1075792_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1075949_1077386_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1077476_1078118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1078453_1079470_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1081512_1082463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1083665_1085087_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1085350_1086067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1086151_1086469_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1086509_1086923_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1086924_1087284_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1087326_1088871_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1088954_1089785_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1089819_1090974_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1091016_1091889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1092005_1094294_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1095500_1095965_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1095991_1096942_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1096959_1097097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1097309_1098086_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1098130_1098988_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1099009_1100026_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1100160_1101201_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1101395_1103477_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1103712_1105206_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1105436_1106231_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1106451_1107810_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1107806_1108649_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1108667_1110554_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1110495_1110747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1110791_1111424_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1111442_1112045_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1112196_1113147_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1113727_1114435_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1114793_1115780_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1115919_1116933_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1116929_1117880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1117897_1118038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1117992_1118451_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1118487_1119801_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1119818_1120190_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1120186_1121650_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1121790_1122519_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1122500_1125350_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1125562_1126513_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930184.1|1126680_1127505_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010930185.1|1127504_1128383_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930186.1|1129287_1130403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699602.1|1130431_1131226_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930188.1|1131222_1133088_+	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_003812436.1|1133166_1133799_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930189.1|1133795_1134098_-	membrane protein	NA	NA	NA	NA	NA
WP_010930190.1|1134140_1135661_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
>prophage 12
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1153231	1219750	4108484	tRNA,transposase	Erysipelothrix_phage(33.33%)	54	NA	NA
WP_023853221.1|1153231_1155028_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248398.1|1155027_1155996_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816844.1|1156065_1156911_+	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_003812405.1|1156978_1157533_+	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_010930198.1|1157579_1158530_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930199.1|1158628_1159261_-	fimbrial protein	NA	NA	NA	NA	NA
WP_010930200.1|1159425_1161708_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1161862_1164559_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1164684_1165173_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1167583_1170454_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1170499_1171714_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1171943_1173371_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1173468_1174560_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1174572_1175331_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1175418_1176321_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1176317_1177268_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1177397_1178381_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1178435_1179158_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1180636_1181992_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1182072_1184448_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_010930213.1|1184612_1186688_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_033446255.1|1186749_1187544_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1187651_1188614_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1188601_1189357_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1189464_1191102_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1191169_1191907_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1192009_1192585_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1192757_1193294_+	membrane protein	NA	NA	NA	NA	NA
WP_033451623.1|1193326_1193641_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1193656_1194502_+	membrane protein	NA	NA	NA	NA	NA
WP_003821443.1|1194540_1195920_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1195997_1196879_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1196977_1197928_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1197924_1198335_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1198442_1199297_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1199289_1200252_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1200297_1201422_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1201527_1202406_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1202530_1203310_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1203463_1204885_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1205319_1207017_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1207243_1208185_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1208511_1209258_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1209265_1210192_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1210313_1211231_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1211270_1212224_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1212248_1212827_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1214500_1215109_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1215186_1215540_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1215623_1216613_-	succinylglutamate desuccinylase	NA	NA	NA	NA	NA
WP_023852977.1|1216609_1216798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1216815_1217766_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1217852_1218803_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1218799_1219750_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1270678	1327888	4108484	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1270678_1271629_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1275375_1275987_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1276209_1277670_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1277766_1279359_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1279712_1279970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1279971_1281312_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1281407_1282097_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1282109_1283540_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1285264_1286086_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1286096_1287668_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1287696_1288674_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1288700_1289504_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1289500_1290295_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1290302_1291538_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_019247978.1|1291551_1291965_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_019247980.1|1292275_1292593_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1292714_1293665_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1294286_1296014_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1296125_1297484_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1297540_1297759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1297776_1298727_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1298767_1299838_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1299860_1300739_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1300910_1301882_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1302044_1302887_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1303048_1303729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931024.1|1303722_1304892_+	NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_010931023.1|1304888_1305920_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931021.1|1307238_1308771_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1308851_1309475_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1309505_1310117_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1310152_1310623_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1311054_1312059_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1312095_1313610_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1313613_1314573_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1314601_1315405_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1315406_1317041_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1317124_1318186_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1318384_1318654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1318657_1319182_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1319597_1320548_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1320544_1321579_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1321687_1322326_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1322620_1322848_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1322970_1323684_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1323928_1324879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023853496.1|1325018_1325264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1325378_1326827_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1326937_1327888_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1419170	1471323	4108484	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1419170_1420121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1420138_1420291_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1420287_1420641_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1420653_1421016_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1421057_1421483_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1421685_1422942_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1423140_1424121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1424270_1425512_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1425610_1426561_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1426569_1427265_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1430086_1430686_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1430696_1432862_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1432885_1434670_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1434669_1434759_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1435453_1435726_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1435725_1437792_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1437788_1438739_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1438837_1439788_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1439903_1440236_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1440232_1440919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930948.1|1440905_1441865_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_010930947.1|1441897_1444267_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1444266_1444899_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1445000_1446341_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1446387_1447743_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_005014990.1|1448033_1448270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1448457_1448775_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1449047_1449563_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814021.1|1449833_1450589_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1450927_1451134_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1451141_1451801_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1452095_1454300_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1454410_1455634_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1455756_1456731_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1456798_1457992_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1458006_1458807_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1458803_1460660_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1460656_1461262_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1461280_1462666_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1463391_1464618_+	transporter	NA	NA	NA	NA	NA
WP_003814011.1|1464706_1465489_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1465587_1466538_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1466564_1467338_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1467349_1468591_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1470372_1471323_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1515248	1583336	4108484	tRNA,transposase	Streptococcus_virus(11.11%)	57	NA	NA
WP_010930416.1|1515248_1515737_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1515854_1516433_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1516538_1516907_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1517005_1517956_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1517962_1519075_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1519761_1520964_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930420.1|1521167_1523828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930421.1|1523840_1527245_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1527912_1530138_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1530184_1530511_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1530561_1531170_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1531268_1532219_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1532288_1533053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446226.1|1533049_1533586_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1533752_1534604_-	membrane protein	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1534663_1535290_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1535286_1536237_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1536335_1537448_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1537437_1538439_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1538544_1540056_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1540052_1541357_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1541468_1542029_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1542296_1542851_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1543306_1543522_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1543776_1546374_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1546370_1547558_+	cupin	NA	NA	NA	NA	NA
WP_010930436.1|1548218_1548833_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_023994740.1|1548921_1550043_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1550060_1550966_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1551858_1552809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1552990_1553743_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1553811_1554471_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1554467_1555196_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1555208_1557488_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1557512_1557716_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1557757_1558390_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1558525_1559443_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1559439_1560153_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1560390_1561161_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1561165_1561765_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1562009_1563500_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1563558_1563843_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003811148.1|1564408_1565335_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1565471_1566212_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1566378_1567755_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1567936_1568842_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1570493_1572296_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_003811159.1|1572413_1573064_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1573162_1574113_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1574134_1575355_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1575540_1576953_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1577016_1578084_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1578083_1579571_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1579580_1580525_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1580684_1581383_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1581460_1582366_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1582385_1583336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1619285	1674876	4108484	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1619285_1620236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1620294_1621068_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1621060_1622617_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1622613_1623564_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1624890_1625493_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1625732_1626434_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1626427_1627210_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1627394_1628345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1628443_1629181_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1629370_1630129_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1630175_1631165_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1631342_1632311_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1633850_1634819_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1634827_1635769_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1636242_1637253_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1637243_1638758_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1638754_1640101_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930475.1|1640103_1641138_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1641187_1642813_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1643365_1644316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1644420_1645368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1645421_1647236_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1647228_1647903_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1648032_1651107_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1651120_1651420_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1651734_1652358_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010930493.1|1652601_1653471_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1653448_1654393_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1654478_1655405_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1655517_1656297_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1656287_1657484_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1657514_1658465_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1658686_1659376_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1659440_1660196_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1660247_1661240_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1661249_1662203_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1662318_1663281_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1664682_1665111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1665107_1666058_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930503.1|1666351_1667074_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1667512_1668700_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930505.1|1668703_1669054_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1670803_1671775_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1671788_1672502_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1672506_1673424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1673530_1673827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|1673925_1674876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1832643	1891913	4108484	tRNA,protease,transposase	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1832643_1833594_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1833718_1834528_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010929577.1|1834728_1835679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1836952_1838170_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1839226_1840129_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1840205_1841078_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1841208_1841577_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1841634_1842681_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1842876_1844133_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1844137_1845475_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1845624_1846581_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1846683_1847616_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1847731_1848052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1848044_1848404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1848451_1850026_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1850078_1851023_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1851040_1851871_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1851863_1853498_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1853494_1854850_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1855756_1857334_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1857337_1858612_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1858709_1859084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1860799_1861933_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1861970_1862576_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1862572_1863391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1863462_1866087_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1866073_1866328_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1866394_1866976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1867279_1867540_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1867705_1868329_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1868328_1869102_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1869098_1870307_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1870332_1870806_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1870879_1871830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1871928_1872879_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1872977_1874327_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1875092_1875848_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1875940_1878823_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1879145_1879571_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1879598_1880747_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1880743_1881250_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033446257.1|1881265_1882552_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_033446258.1|1882601_1883897_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1883898_1884537_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023852925.1|1884542_1885700_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1885726_1887082_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1887085_1888156_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1888294_1888531_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1888618_1889725_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1889690_1890995_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1891013_1891913_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 18
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1902153	1946476	4108484	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1902153_1903104_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1903202_1904153_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1904352_1905438_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1905453_1906215_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930781.1|1906211_1907135_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.6e-23
WP_019248115.1|1907233_1907758_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1907766_1908510_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1908605_1908845_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1908858_1909011_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1909096_1910587_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1910678_1911617_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1911613_1911790_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1911792_1912455_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1914076_1914220_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1914216_1915191_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1915085_1915340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1915357_1916308_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1916304_1917579_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1917682_1918876_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1918872_1919526_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1919522_1920959_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1920946_1921306_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1922120_1922261_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1922278_1923229_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1924274_1926140_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1926397_1927918_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1928005_1928656_-	flavodoxin family protein	NA	NA	NA	NA	NA
WP_010930766.1|1929604_1930900_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1930921_1931806_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1931904_1932780_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1932769_1933126_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1933256_1934231_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1934360_1934540_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1934637_1935162_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1935172_1936009_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1936121_1936493_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1936489_1937041_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1937056_1938748_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1938796_1939477_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1939724_1940189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1940358_1941288_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1941300_1941948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1942021_1943839_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1943922_1944873_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1945525_1946476_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	1976249	2040618	4108484	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1976249_1977200_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1977421_1978372_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1978470_1979436_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1979573_1980473_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1983067_1984555_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1984565_1985762_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1985834_1987154_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1987150_1988026_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1988056_1989205_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1989222_1989537_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1989558_1990281_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1990280_1991099_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1991103_1991631_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1991636_1992893_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1993251_1994391_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1994468_1995341_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1996211_1997162_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1997121_1997757_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1998116_1999439_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1999757_2000579_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|2002003_2002576_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2002615_2004445_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2004407_2005466_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2005503_2005965_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2006049_2006796_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2008286_2011517_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2011583_2012915_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2013167_2013542_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2013644_2014823_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2014833_2015424_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2015534_2016341_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2016366_2017161_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2018161_2019136_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2019294_2019807_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2019963_2020935_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2022679_2023486_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010930716.1|2023482_2024784_-	malonyl-CoA decarboxylase	NA	NA	NA	NA	NA
WP_010930715.1|2024734_2025499_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2025612_2026383_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2026467_2027655_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2027727_2028102_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_003810308.1|2028202_2029465_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2029461_2030319_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2030491_2031493_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2031944_2032895_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446265.1|2034458_2035610_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2035978_2036215_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2036278_2036446_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_023853105.1|2036559_2038455_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.3e-19
WP_062826579.1|2038618_2039569_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2039667_2040618_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	2172147	2221800	4108484	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2172147_2173098_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2173196_2175191_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2175250_2176216_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2176205_2179067_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2179069_2179576_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2179680_2180889_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2180890_2181829_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2181990_2182464_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2182460_2183411_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2183521_2183962_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2184090_2185320_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2185358_2186180_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2186233_2187385_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2187476_2187965_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2190515_2193065_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2193135_2195709_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2195974_2196175_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2196206_2196368_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2196425_2196764_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2196912_2197863_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2198637_2199306_+	arylesterase	NA	NA	NA	NA	NA
WP_010930531.1|2199287_2201243_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_004568486.1|2201485_2202235_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2202247_2203111_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2203114_2204530_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2204663_2205392_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2205530_2205731_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2205906_2206305_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2206328_2207729_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2207847_2208600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003816527.1|2208888_2209566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2209592_2210372_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2210368_2211253_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2211270_2212050_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2212034_2212793_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_023852762.1|2212930_2213566_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2213833_2214850_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2214947_2215988_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2216122_2217415_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2218774_2219158_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2219175_2219763_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2219800_2220751_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2220849_2221800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	2478111	2536355	4108484	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2478111_2479062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2479541_2480198_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2480212_2481880_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2481882_2482512_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2482723_2483818_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2483962_2484775_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_010930383.1|2484778_2486362_-	membrane protein	NA	NA	NA	NA	NA
WP_010930382.1|2486532_2487663_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2487849_2488926_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2489007_2489658_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2489672_2491076_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2491359_2492178_-	solute-binding protein	NA	NA	NA	NA	NA
WP_010930378.1|2492174_2492879_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2493778_2494894_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2494927_2495302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2495324_2496482_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2496494_2496728_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2497362_2500332_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2500346_2500556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2500707_2501337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023994978.1|2501333_2503391_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2503447_2504128_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2504124_2504685_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2504691_2505789_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2505941_2506535_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2506531_2507824_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2507837_2508380_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2508389_2509226_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2509259_2510321_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2510362_2511415_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2511430_2511733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2511874_2512825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2512842_2513007_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2513003_2514698_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2514694_2515780_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2515827_2516727_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2516737_2517382_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2518403_2521646_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2521656_2522811_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2523037_2524000_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2524098_2525049_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2525147_2526098_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2526107_2526797_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2526856_2527294_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2527339_2528233_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2528280_2529453_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2529449_2530604_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003811750.1|2530800_2531151_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2531140_2531575_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2531591_2532542_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2532689_2533157_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2533137_2534295_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2534360_2535287_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2535404_2536355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	2578632	2645132	4108484	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2578632_2579583_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2579952_2580525_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2580527_2581538_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2581530_2582031_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2582041_2582383_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_010930334.1|2582451_2583186_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2583202_2583472_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2583494_2584283_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2584329_2585346_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2585562_2587005_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2587183_2588803_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2588923_2590744_-	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2590822_2592355_-	flagellar hook-associated protein 3	NA	NA	NA	NA	NA
WP_010930329.1|2592388_2594035_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2594104_2595127_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2595144_2596278_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2596280_2596970_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2596969_2597755_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2597798_2598563_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2598601_2600023_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2600088_2600793_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2600840_2601260_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2601272_2601680_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2601863_2602574_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2602700_2602991_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2603008_2603491_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2607996_2609151_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2609456_2610473_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2610719_2611508_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2611574_2612255_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2612251_2613022_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2613120_2614071_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2614126_2615044_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2615054_2616233_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2616252_2617248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2618836_2619445_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2619432_2620473_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2620490_2621453_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2621449_2622643_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2622639_2623437_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2623462_2624449_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2624467_2626507_-	acetyl-CoA synthetase	NA	NA	NA	NA	NA
WP_010930315.1|2626708_2627389_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2627402_2628314_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2628310_2628889_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2629027_2629933_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2629940_2633360_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2633347_2635948_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2636903_2637536_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2637929_2638688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811370.1|2638684_2639887_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2640074_2641025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2641932_2643078_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2643064_2643820_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2643936_2644116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2644181_2645132_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 23
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	2673247	2710659	4108484	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2673247_2674198_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2674296_2675247_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2675339_2675879_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2675985_2676330_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2676387_2677836_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2678023_2678359_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2679986_2681165_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2681247_2681748_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2681857_2682559_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA	NA
WP_010930295.1|2682570_2683035_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2683049_2683325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2683321_2684098_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2684126_2684954_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2685079_2685550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2685676_2686570_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2686617_2687799_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2687811_2688627_-	exported protein	NA	NA	NA	NA	NA
WP_010930291.1|2688760_2689288_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2689284_2689782_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2689929_2690307_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2690528_2691479_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2691577_2692189_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2692423_2693551_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2693661_2694750_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2694802_2695654_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2695673_2696555_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2696731_2698045_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2698255_2699089_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2699085_2699667_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2700020_2700971_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2700986_2702102_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003811272.1|2702204_2703131_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2703130_2704369_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2704365_2705133_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2705133_2705835_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2705916_2706363_-	glutamate racemase	NA	NA	NA	NA	NA
WP_010930283.1|2707252_2707891_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2708659_2709610_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2709708_2710659_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	2809786	2864303	4108484	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2809786_2810737_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2811065_2811671_+	fimbrial protein	NA	NA	NA	NA	NA
WP_010931072.1|2811724_2813038_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2813112_2813583_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2813582_2814371_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2814381_2816034_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2816121_2817072_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2818233_2818740_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2818736_2819501_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2819516_2819801_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2819865_2820855_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2821026_2821956_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2821927_2822614_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2822647_2823193_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2823237_2824503_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2824499_2825402_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2826583_2827528_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2827622_2829140_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2829181_2830810_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2830917_2831799_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2834911_2835286_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2835310_2835649_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2835692_2837327_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2837365_2838712_-	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_003812010.1|2838819_2840241_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2840310_2840895_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2840997_2841948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2842082_2843189_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2843199_2844297_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2844441_2845647_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2845653_2846175_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_023853551.1|2846171_2846654_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2846659_2846911_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2846891_2847377_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2847512_2850974_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2850991_2851876_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2851885_2852317_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2852563_2853067_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2853144_2854545_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2854619_2855495_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2855491_2856499_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2856966_2857272_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2857362_2857953_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2858143_2859160_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2859351_2861688_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2861770_2862205_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2862303_2863254_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2863352_2864303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	2872328	2929114	4108484	protease,transposase	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2872328_2873279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2874985_2875252_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2875959_2876298_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2880851_2881454_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2881550_2882840_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2882897_2883629_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2883625_2884429_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2884425_2885514_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2885510_2886440_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2886588_2887734_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2887755_2888706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2888723_2888882_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2889036_2892858_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2893014_2893683_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2893687_2895361_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2895379_2896699_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2896703_2899019_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2899074_2901243_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_023853340.1|2901239_2906420_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2906518_2906833_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2907060_2907306_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2907400_2907919_+	hypothetical protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2908018_2909224_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2909339_2910737_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2910853_2911432_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2911504_2912896_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2913063_2914014_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2914294_2914915_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2914911_2915325_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2915321_2916365_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2916420_2916609_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2916618_2917383_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2917473_2918130_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2918221_2918980_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2919005_2920607_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2920807_2921812_+	DUF4880 domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2921912_2922176_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2922293_2923070_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2923660_2924611_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2926994_2928107_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2928163_2929114_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	2959500	3003191	4108484	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2959500_2960451_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2960468_2960618_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2960571_2961468_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2963745_2965971_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2966135_2967224_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2967180_2967834_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2967881_2968679_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2969210_2970161_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994659.1|2970241_2971390_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2971446_2972397_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2972495_2972801_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2972829_2973264_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2973265_2974510_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2974506_2975217_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2975231_2976143_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2976505_2976910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2976906_2977365_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247891.1|2977371_2978280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931150.1|2978276_2979143_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2979129_2979957_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2979967_2981095_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2982172_2983411_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2983452_2984715_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2984721_2985474_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2985525_2985711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2985986_2986451_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2986482_2987142_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2987286_2989395_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2989391_2990342_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2990445_2991066_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820818.1|2991169_2991910_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2993044_2994169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2994214_2994583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2994824_2995775_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2996810_2997353_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2997550_2997721_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2997738_2998689_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931157.1|2998685_2999594_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2999720_3000557_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3001069_3002179_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3002240_3003191_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	3383135	3436876	4108484	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3383135_3384086_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3384490_3385135_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3385159_3385744_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3385844_3386462_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3386464_3388180_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3388176_3388485_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3388501_3389119_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3389163_3389466_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3389566_3390421_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3390608_3390833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3391002_3391275_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3391692_3392100_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3392469_3393264_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3393364_3394600_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3394668_3395685_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3395696_3397073_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3397069_3398266_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3398262_3399801_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3399797_3401057_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3402997_3403948_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3404714_3405809_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3405801_3407136_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3407089_3407773_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3407798_3408962_-	acyl-CoA dehydrogenase C-terminal domain protein	NA	NA	NA	NA	NA
WP_004566224.1|3408958_3409960_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3409959_3410832_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3410828_3411578_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3411574_3412366_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3412362_3413502_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3413777_3414563_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3414596_3415379_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3415382_3415772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931352.1|3416911_3417775_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931353.1|3417810_3418899_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3418895_3419846_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3420199_3423178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3424104_3424983_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3426931_3427882_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3427878_3428346_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3428388_3429159_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|3429179_3429980_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3429990_3431400_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3431494_3432280_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3432519_3433536_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3433643_3434036_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3434173_3434854_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3434858_3435830_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3435925_3436876_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	3443031	3502329	4108484	tRNA,transposase	Acinetobacter_phage(27.27%)	47	NA	NA
WP_003820957.1|3443031_3444795_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3444906_3445785_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3445897_3446713_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3446716_3446968_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3447052_3448069_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3448399_3448621_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3450981_3451899_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3452396_3453605_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3453684_3455256_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3455373_3456309_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3456497_3457442_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3458009_3463727_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3463732_3464860_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3464915_3465542_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|3465813_3466830_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3466925_3467636_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3467632_3468622_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3468717_3470349_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3470351_3471089_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3471244_3472117_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_023852703.1|3472466_3473606_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3473602_3474262_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3474333_3474966_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3474995_3475514_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3475524_3476634_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3476680_3477535_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3477536_3478439_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3479661_3480612_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3482366_3483356_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931375.1|3483531_3484320_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3484316_3485348_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3485366_3485930_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3485985_3487506_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3487769_3488474_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_023852620.1|3488481_3489210_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3489324_3489699_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3489741_3491031_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3491027_3492197_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3492193_3493033_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3493092_3494028_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3494040_3494991_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3495089_3496052_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3496083_3496443_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3496567_3497470_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3497471_3499244_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3499278_3500055_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3501378_3502329_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	3517267	3575340	4108484	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3517267_3518218_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3518346_3519480_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3519523_3520429_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3520431_3522132_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3522128_3523049_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3523056_3524034_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3524092_3525127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815317.1|3527101_3527338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3527464_3528328_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3528416_3529238_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3529317_3530055_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931397.1|3530051_3531044_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_010931398.1|3531196_3531820_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3531864_3533013_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931400.1|3535336_3536287_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3536627_3537578_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3537676_3538627_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3538923_3539421_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3539463_3541239_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3541246_3542113_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3542119_3542854_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3544023_3544818_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3545107_3545698_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3545731_3547060_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3547134_3548280_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3548391_3549390_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3549352_3549787_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3551303_3552188_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3552184_3553390_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3553386_3554247_-	endonuclease	NA	NA	NA	NA	NA
WP_003807038.1|3554359_3556150_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_033446243.1|3556190_3556835_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	8.5e-11
WP_010929971.1|3556856_3557165_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3557330_3558617_-	membrane protein	NA	NA	NA	NA	NA
WP_010929969.1|3560050_3561001_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3562952_3564167_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3564272_3565262_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3565258_3565867_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3565879_3566509_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3566505_3567126_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3567157_3567949_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3568800_3569256_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_010929965.1|3569274_3570201_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3570254_3571541_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3572471_3573344_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3573340_3574291_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3574389_3575340_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011202	Bordetella pertussis strain I602 chromosome, complete genome	4108484	4007552	4072464	4108484	transposase	Planktothrix_phage(40.0%)	60	NA	NA
WP_039249574.1|4007552_4008038_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_153302797.1|4008126_4008264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931647.1|4008256_4009237_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019248461.1|4009503_4010313_+	pertussis toxin ADP-ribosyltransferase subunit PtxA	NA	NA	NA	NA	NA
WP_014906114.1|4010352_4011033_+	pertussis toxin binding subunit PtxB	NA	NA	NA	NA	NA
WP_010929491.1|4011026_4011485_+	pertussis toxin subunit 4	NA	NA	NA	NA	NA
WP_023853616.1|4011496_4011859_+	pertussis toxin binding subunit PtxD	NA	NA	NA	NA	NA
WP_010931651.1|4011941_4012625_+	pertussis toxin binding subunit PtxE	NA	NA	NA	NA	NA
WP_010929493.1|4012680_4012989_+	type IV secretion system protein PtlA	NA	NA	NA	NA	NA
WP_010929494.1|4013007_4013322_+	type IV secretion system protein PtlB	NA	NA	NA	NA	NA
WP_010931652.1|4013318_4015793_+	type IV secretion system protein PtlC	NA	NA	NA	NA	NA
WP_010931653.1|4015800_4017192_+	type IV secretion system protein PtlD	NA	NA	NA	NA	NA
WP_010929497.1|4017188_4017374_+	type IV secretion system protein PtlI	NA	NA	NA	NA	NA
WP_010929498.1|4017352_4018054_+	type IV secretion system peptidoglycanase PtlE	NA	NA	NA	NA	NA
WP_010931654.1|4018050_4018872_+	type IV secretion system protein PtlF	NA	NA	NA	NA	NA
WP_010931655.1|4018852_4019977_+	type IV secretion system protein PtlG	NA	NA	NA	NA	NA
WP_010929500.1|4019969_4020989_+	type IV secretion system protein PtlH	NA	NA	NA	NA	NA
WP_010931656.1|4021194_4022085_-	DMT family transporter	NA	NA	NA	NA	NA
WP_010929501.1|4022329_4023121_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815873.1|4023203_4023578_+	DUF1232 domain-containing protein	NA	NA	NA	NA	NA
WP_010931658.1|4023555_4024965_+	DUF2868 domain-containing protein	NA	NA	NA	NA	NA
WP_003815876.1|4024957_4026340_+	GTPase/DUF3482 domain-containing protein	NA	A0A0R6PHS5	Moraxella_phage	38.9	9.9e-57
WP_003815878.1|4026674_4028279_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931659.1|4028356_4029328_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931660.1|4029338_4030265_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931661.1|4030655_4031606_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4031775_4033002_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4033201_4034068_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4034060_4035023_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4035123_4036074_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4036172_4037123_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4037221_4038172_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4038168_4039662_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4039658_4042766_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4042762_4045831_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4045827_4047078_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_023853184.1|4047258_4048011_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_010931667.1|4048052_4048697_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010931668.1|4048705_4049686_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4049785_4050529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815049.1|4050611_4050959_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4051056_4051899_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4051943_4052831_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4052857_4053046_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4053143_4054601_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4054587_4056114_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4056132_4056600_-	membrane protein	NA	NA	NA	NA	NA
WP_010931671.1|4056599_4057622_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003815064.1|4057742_4058483_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.7	4.4e-35
WP_003815066.1|4058537_4059638_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4059639_4060830_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4060949_4061966_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4062284_4062956_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4062952_4063861_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4064072_4064720_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_033446142.1|4068580_4069648_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4069658_4070468_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023999981.1|4070557_4071331_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_023853189.1|4071331_4071496_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929577.1|4071513_4072464_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
