The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	27282	70036	4105954	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010930363.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	232666	307010	4105954	transposase	uncultured_Mediterranean_phage(15.38%)	54	NA	NA
WP_010929591.1|232666_233617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931563.1|233613_234804_-	voltage-gated potassium channel protein	NA	NA	NA	NA	NA
WP_010931562.1|234925_235690_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA	NA
WP_003807735.1|235776_236880_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_010931561.1|237071_238088_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815102.1|238369_238858_+	D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	34.1	1.6e-17
WP_003817656.1|240201_240882_-	protein-L-isoaspartate O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	34.8	3.5e-15
WP_010931560.1|240943_241795_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_010931559.1|241791_242589_-	thiazole synthase	NA	NA	NA	NA	NA
WP_010931558.1|242692_243586_-	cobalamin-binding protein	NA	NA	NA	NA	NA
WP_010931557.1|243597_245487_-	TonB-dependent receptor	NA	A0A0P0I887	Acinetobacter_phage	30.8	7.6e-07
WP_010931556.1|245823_249597_+	methionine synthase	NA	A0A140XBC7	Dickeya_phage	50.8	8.6e-10
WP_010929591.1|249593_250544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929826.1|250852_251545_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	41.6	6.3e-36
WP_003818232.1|251918_252419_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA	NA
WP_023853391.1|252525_253446_+	bestrophin	NA	NA	NA	NA	NA
WP_010929823.1|253462_253939_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929822.1|254032_255883_+	biosynthetic-type acetolactate synthase large subunit	NA	E4WLQ6	Ostreococcus_tauri_virus	30.4	2.2e-59
WP_010929821.1|255938_256697_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929820.1|256724_258158_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003818225.1|258231_259011_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929819.1|259023_259857_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_020699616.1|259865_260636_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.9	8.1e-24
WP_010929818.1|260635_261700_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929817.1|261851_264479_-	DNA topoisomerase III	NA	A0A0G2YA05	Acanthamoeba_polyphaga_mimivirus	25.4	6.1e-23
WP_010929816.1|264542_267164_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA	NA
WP_003815964.1|268091_268550_-	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_010929815.1|268828_271072_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA	NA
WP_010929814.1|271268_273293_-	TRAP transporter permease	NA	NA	NA	NA	NA
WP_010929813.1|273416_274379_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929812.1|274590_275730_+	DSD1 family PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010929811.1|275752_276718_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_004565905.1|276913_278104_+	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	26.7	4.4e-21
WP_003815955.1|278117_278363_+	DUF1653 domain-containing protein	NA	NA	NA	NA	NA
WP_010929810.1|278391_280413_-	acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha	NA	NA	NA	NA	NA
WP_003815953.1|280459_282067_-	methylcrotonoyl-CoA carboxylase	NA	A0A1B2ITV7	Pike_perch_iridovirus	57.3	5.4e-22
WP_010929808.1|282167_283337_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|286218_287169_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929807.1|287192_288251_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_003818201.1|288325_288700_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|289254_290205_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929833.1|291761_292607_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929834.1|292694_293858_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010929835.1|294276_295248_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929836.1|295286_296714_-	amidase	NA	NA	NA	NA	NA
WP_023853625.1|296833_297625_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929838.1|297743_300197_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.8	2.3e-112
WP_010929839.1|300291_301401_-	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	32.6	1.2e-41
WP_010929554.1|301403_302813_-	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_003816025.1|303218_303353_+	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_003816026.1|303448_303820_+	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_003816027.1|303816_304089_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	52.2	7.0e-15
WP_010927254.1|304137_305829_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_005012067.1|306059_307010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	489373	607268	4105954	tRNA,transposase	Acinetobacter_phage(22.22%)	102	NA	NA
WP_005012067.1|489373_490324_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929956.1|490422_491373_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929957.1|492095_493370_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_003807618.1|493456_494539_+	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.7	3.3e-07
WP_010929958.1|494549_495362_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010929959.1|495398_495725_+	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA	NA
WP_003807624.1|495729_496290_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_003819054.1|496530_497523_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929960.1|497541_498537_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_023853194.1|498552_499929_+	FAD binding domain-containing protein	NA	A0A0P0IVM8	Acinetobacter_phage	37.3	2.4e-18
WP_010929962.1|499921_502303_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_019247263.1|502319_502709_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_020699695.1|502835_503066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|503170_504121_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929963.1|504219_505170_-	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_003815183.1|505166_506039_-	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929964.1|506969_508256_+	cytochrome c	NA	NA	NA	NA	NA
WP_010929965.1|508309_509236_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929966.1|509254_509710_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003815177.1|510561_511353_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_003815175.1|511384_512005_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_010929967.1|512001_512631_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815172.1|512643_513252_-	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_003815171.1|513248_514238_-	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_010929968.1|514343_515558_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|517509_518460_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929970.1|519893_521180_+	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929971.1|521345_521654_+	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_003807035.1|521654_522320_+	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_003807038.1|522360_524151_+|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_010929972.1|524263_525124_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_010929973.1|525120_526326_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929974.1|526322_527207_-	DMT family transporter	NA	NA	NA	NA	NA
WP_033446233.1|528723_529158_-	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_014905478.1|529120_530119_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931408.1|530230_531376_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931407.1|531450_532779_+	amidase	NA	NA	NA	NA	NA
WP_003815296.1|532812_533403_-	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931406.1|533692_534487_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249391.1|535656_536391_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931404.1|536397_537264_-	copper resistance protein B	NA	NA	NA	NA	NA
WP_010931403.1|537271_539047_-	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_029443756.1|539089_539587_-	cupredoxin family protein	NA	NA	NA	NA	NA
WP_005013747.1|539883_540834_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|540932_541883_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931400.1|542223_543174_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931399.1|545497_546646_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003817794.1|546690_547353_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931397.1|547466_548459_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003815313.1|548455_549193_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815315.1|549272_550094_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931396.1|550182_551046_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815317.1|551172_551409_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931395.1|553383_554418_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003817805.1|554476_555454_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931394.1|555461_556382_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_023852622.1|556378_558079_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931393.1|558081_558987_+	hydrolase	NA	NA	NA	NA	NA
WP_010931392.1|559030_560164_+	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_005012808.1|560292_561243_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931391.1|561341_563411_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	37.3	2.6e-101
WP_019247688.1|563453_565556_-	primosomal protein N'	NA	NA	NA	NA	NA
WP_010931389.1|565862_566939_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_010931388.1|567014_567899_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003815341.1|568081_568504_-	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA	NA
WP_010931387.1|568513_569914_-	F0F1 ATP synthase subunit beta	NA	NA	NA	NA	NA
WP_003817813.1|569956_570862_-	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA	NA
WP_010931386.1|570960_572502_-	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA	NA
WP_003815348.1|572536_573076_-	F0F1 ATP synthase subunit delta	NA	NA	NA	NA	NA
WP_010931385.1|573088_573559_-	F0F1 ATP synthase subunit B	NA	NA	NA	NA	NA
WP_003815363.1|573696_573939_-	F0F1 ATP synthase subunit C	NA	NA	NA	NA	NA
WP_003815364.1|574055_574937_-	F0F1 ATP synthase subunit A	NA	NA	NA	NA	NA
WP_003815365.1|575009_575330_-	ATP synthase subunit I	NA	NA	NA	NA	NA
WP_023852617.1|576181_577132_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003815367.1|578455_579232_-	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_010931383.1|579266_581039_+	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931382.1|581040_581943_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_003817821.1|582067_582427_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931381.1|582458_583421_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_005012067.1|583519_584470_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931380.1|584482_585418_-	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_010931379.1|585477_586317_-	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931378.1|586313_587483_-	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_003815379.1|587479_588769_-	murein transglycosylase A	NA	NA	NA	NA	NA
WP_003815381.1|588811_589186_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815384.1|589291_590029_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_010931377.1|590036_590741_+	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_010931376.1|591004_592525_+	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_003815390.1|592580_593144_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_003817833.1|593162_594194_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_010931375.1|594190_594979_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_019247413.1|594999_595158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997720.1|595154_596144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|597900_598851_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931374.1|600073_600976_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814312.1|600977_601832_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931373.1|601878_602988_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931372.1|602998_603517_-	flavin reductase family protein	NA	NA	NA	NA	NA
WP_003814302.1|603546_604179_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_003814300.1|604250_604910_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814298.1|604906_606127_-	MFS transporter	NA	NA	NA	NA	NA
WP_019247745.1|606395_607268_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
>prophage 5
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	611682	675515	4105954	tRNA,transposase	Pandoravirus(12.5%)	47	NA	NA
WP_010931363.1|611682_612699_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814287.1|612970_613597_-	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931367.1|613652_614780_-	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814283.1|614785_620503_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_003814277.1|621070_622015_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814275.1|622203_623139_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_010931365.1|623256_624828_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247692.1|624907_626116_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_019247693.1|626613_627531_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003814254.1|629891_630113_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_010929632.1|630443_631460_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814252.1|631544_631796_-	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_003814250.1|631799_632615_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_010931362.1|632727_633606_-	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003820957.1|633717_635481_-|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931361.1|635596_636937_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_010927010.1|638006_639431_-	HAMP domain-containing protein	NA	NA	NA	NA	NA
WP_003814239.1|639430_640132_-	response regulator	NA	W8CYM9	Bacillus_phage	36.6	5.6e-32
WP_010930179.1|641636_642587_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994844.1|642682_643654_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931357.1|643658_644339_-	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_003814742.1|644476_644869_+	OsmC family protein	NA	NA	NA	NA	NA
WP_010931561.1|644976_645993_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814739.1|646232_647018_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931356.1|647112_648522_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_010927090.1|648532_649333_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931355.1|649353_650124_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010931354.1|650166_650634_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_005013747.1|650630_651581_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818344.1|653529_654408_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_019247959.1|655334_658313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931070.1|658666_659617_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931353.1|659613_660702_-	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931352.1|660737_661601_-	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931351.1|662740_663130_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_014486103.1|663133_663916_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_047122778.1|663949_664735_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931349.1|665010_666150_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931348.1|666146_666938_+	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931347.1|666934_667684_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931346.1|667680_668553_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_004566224.1|668552_669554_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003808195.1|669550_670714_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003808193.1|670739_671423_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247312.1|671376_672711_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931344.1|672703_673798_+	CoA transferase	NA	NA	NA	NA	NA
WP_005012067.1|674564_675515_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	694426	771735	4105954	integrase,tRNA,transposase,protease	Bacillus_phage(20.0%)	57	741563:741581	761451:761469
WP_023995489.1|694426_695377_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931335.1|695475_696951_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931334.1|698538_699426_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931333.1|699428_700370_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931332.1|700415_701981_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931331.1|703758_705084_-	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931330.1|705266_706724_+	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	21.1	7.6e-15
WP_003816386.1|706687_707185_-	dihydrofolate reductase	NA	A0A140HLG8	Bacillus_phage	38.9	3.0e-24
WP_010931328.1|707215_708187_-	thymidylate synthase	NA	J7KKN7	Erwinia_phage	33.3	4.8e-50
WP_003808444.1|708239_708677_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931327.1|708800_709469_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA	NA
WP_003808448.1|710197_711301_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_171024626.1|711403_712681_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	NA	NA	NA	NA	NA
WP_010930472.1|712692_713718_+	Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC	NA	A0A2K9L4U8	Tupanvirus	44.2	4.7e-72
WP_010931325.1|713719_715090_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931324.1|715090_716227_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931323.1|716273_718199_+	asparagine synthase (glutamine-hydrolyzing)	NA	A0A2K9R7N5	Dishui_lake_phycodnavirus	29.0	1.0e-27
WP_010931322.1|718195_719317_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010931321.1|719313_720468_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_010931320.1|720464_721595_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_003808462.1|721602_723168_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010931319.1|723174_724557_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	31.6	6.2e-51
WP_003808465.1|724835_725447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931317.1|725538_726954_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818936.1|726971_727682_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010931316.1|727678_729001_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_010931315.1|729080_731042_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_003818932.1|731167_732481_-	fumarylacetoacetase	NA	NA	NA	NA	NA
WP_003818930.1|732589_733888_-	homogentisate 1,2-dioxygenase	NA	NA	NA	NA	NA
WP_010931314.1|734070_734979_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003808487.1|734988_735198_-	DUF2783 domain-containing protein	NA	NA	NA	NA	NA
WP_003808489.1|735209_736889_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931313.1|736990_737944_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010925978.1|738034_738862_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	NA	NA	NA	NA
WP_010931312.1|738860_740747_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003818921.1|740743_741343_+	lipoprotein localization protein LolB	NA	NA	NA	NA	NA
WP_010931311.1|741391_742291_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA	NA
741563:741581	attL	CTGCCTGGCGTGGCCGAGT	NA	NA	NA	NA
WP_010931310.1|742499_743450_+	ribose-phosphate pyrophosphokinase	NA	A0A2K9L8D8	Tupanvirus	35.5	7.3e-43
WP_029443719.1|743572_744187_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA	NA
WP_010931308.1|744315_744912_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931307.1|744908_745691_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010931306.1|745763_746855_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_010931305.1|747134_748262_+|integrase	site-specific integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	33.6	1.4e-48
WP_010931304.1|748603_749650_+	Fic family protein	NA	NA	NA	NA	NA
WP_010931303.1|749797_752917_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA	NA
WP_023994585.1|752918_755870_+	DNA methylase	NA	G8I4P9	Mycobacterium_phage	25.1	2.9e-21
WP_010931301.1|755885_757097_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|757280_758231_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274087.1|758247_758742_+	DUF4276 family protein	NA	NA	NA	NA	NA
WP_019247740.1|758745_759003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248455.1|759546_760458_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_029443992.1|760539_760824_+	ATP-dependent helicase	NA	A0A1V0SIN4	Klosneuvirus	34.1	6.8e-05
WP_005012067.1|761607_762558_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
761451:761469	attR	ACTCGGCCACGCCAGGCAG	NA	NA	NA	NA
WP_019247178.1|762976_765541_-	autotransporter domain-containing protein	NA	NA	NA	NA	NA
WP_019247179.1|765585_767439_-	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA	NA
WP_014905963.1|767771_769343_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|770784_771735_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1018718	1120062	4105954	tRNA,transposase	Bacillus_virus(27.27%)	92	NA	NA
WP_003813026.1|1018718_1019834_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_003813022.1|1019934_1020753_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010931185.1|1020850_1021462_-	glutathione S-transferase	NA	NA	NA	NA	NA
WP_010931184.1|1021621_1022998_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	47.5	2.2e-109
WP_003813017.1|1023060_1023519_+	cytochrome c	NA	NA	NA	NA	NA
WP_003813013.1|1023603_1024299_-	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA	NA
WP_003813010.1|1024360_1024642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931182.1|1025204_1025957_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_003813006.1|1026001_1027078_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_005012067.1|1027074_1028025_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486100.1|1028127_1028790_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019249309.1|1028884_1029055_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247599.1|1029407_1030409_+	amidase	NA	NA	NA	NA	NA
WP_003818702.1|1030411_1031608_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486098.1|1031628_1032432_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247598.1|1032512_1032809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247597.1|1032839_1033403_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014486097.1|1033443_1034301_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003818698.1|1034308_1035058_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	6.2e-29
WP_014486096.1|1035079_1035952_+	polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_014486095.1|1035980_1036760_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486094.1|1036793_1037591_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003808978.1|1040245_1040638_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486091.1|1040631_1041492_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003818691.1|1041495_1042458_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014486089.1|1043234_1043924_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	4.8e-12
WP_010930208.1|1044784_1045735_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931181.1|1046084_1046954_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010926062.1|1047024_1047720_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010931179.1|1047709_1048219_+	nucleoside deaminase	NA	NA	NA	NA	NA
WP_010931178.1|1048215_1049436_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931177.1|1049383_1050286_-	transcriptional regulator GcvA	NA	NA	NA	NA	NA
WP_023997744.1|1051172_1052459_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931176.1|1052497_1053871_+	amidase	NA	NA	NA	NA	NA
WP_010931175.1|1053909_1054611_-	riboflavin synthase	NA	NA	NA	NA	NA
WP_010931174.1|1054909_1055899_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003809010.1|1055999_1056461_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931173.1|1056476_1057025_-	cysteine dioxygenase family protein	NA	NA	NA	NA	NA
WP_010931172.1|1057166_1058642_-	acyl--CoA ligase	NA	Q75ZG1	Hepacivirus	25.6	3.0e-35
WP_010931171.1|1058747_1059839_+	DUF2817 domain-containing protein	NA	NA	NA	NA	NA
WP_010931170.1|1059842_1060625_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931169.1|1060634_1061423_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.0	1.1e-33
WP_010931168.1|1062548_1062983_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_010931167.1|1062979_1063990_-	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_003809025.1|1064033_1064960_-	VOC family protein	NA	NA	NA	NA	NA
WP_003809026.1|1065246_1065615_+	DUF861 domain-containing protein	NA	NA	NA	NA	NA
WP_023853143.1|1065831_1066782_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931165.1|1066826_1069253_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	33.8	1.2e-86
WP_010931164.1|1069301_1069994_+	HD domain-containing protein	NA	A0A1D6Y7U0	Golden_Marseillevirus	29.9	4.7e-07
WP_010931163.1|1070066_1071266_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_003819549.1|1071283_1072189_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931162.1|1072304_1073234_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010931161.1|1073259_1074606_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931160.1|1074633_1075383_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	26.4	1.2e-11
WP_010931159.1|1075396_1076179_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1076371_1077322_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931158.1|1077383_1078493_-	porin	NA	NA	NA	NA	NA
WP_003815281.1|1079005_1079842_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_023997028.1|1079911_1080877_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1080873_1081824_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|1082209_1082752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1083787_1084738_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247402.1|1084979_1085348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019248356.1|1085393_1086518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931156.1|1087652_1088405_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931155.1|1088496_1089117_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852714.1|1089220_1090171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931154.1|1090167_1092276_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003820814.1|1092420_1093080_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_003820813.1|1093111_1093576_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_019248355.1|1093851_1094037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931153.1|1094088_1094841_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931152.1|1094847_1096110_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_023852748.1|1096151_1097390_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_003820806.1|1098467_1099595_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_003814524.1|1099605_1100433_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_010931150.1|1100419_1101286_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010931149.1|1102652_1103057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446288.1|1103419_1104331_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003820799.1|1104345_1105056_+	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931147.1|1105052_1106297_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820797.1|1106298_1106733_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_003814535.1|1106761_1107067_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_005012067.1|1107165_1108116_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|1108172_1109327_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_010930176.1|1109401_1110352_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931144.1|1110883_1111681_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247918.1|1111728_1112382_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003814544.1|1112338_1113427_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_003814547.1|1113591_1115817_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_023852715.1|1118094_1118991_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_005012067.1|1119111_1120062_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1150448	1221419	4105954	transposase,protease	uncultured_Mediterranean_phage(25.0%)	52	NA	NA
WP_005012808.1|1150448_1151399_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|1151455_1152568_+	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012067.1|1154951_1155902_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931129.1|1156492_1157269_+	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_003812908.1|1157386_1157650_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931128.1|1157750_1158755_-	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_010931127.1|1158955_1160557_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931126.1|1160582_1161341_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931125.1|1161432_1162089_-	adenylate kinase	NA	NA	NA	NA	NA
WP_010931124.1|1162179_1162944_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003812895.1|1162953_1163142_-	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931123.1|1163197_1164241_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_010931122.1|1164237_1164651_-	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_003812889.1|1164647_1165268_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_005012067.1|1165548_1166499_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931120.1|1166666_1168058_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_010931119.1|1168130_1168709_+	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_019247560.1|1168825_1170223_+	chloride channel protein	NA	NA	NA	NA	NA
WP_010931117.1|1170338_1171544_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_003820399.1|1171643_1172162_-	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_003812875.1|1172256_1172502_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820400.1|1172729_1173044_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_010931116.1|1173133_1178323_+	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_010931115.1|1178319_1180488_+	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931114.1|1180543_1182859_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_003820402.1|1182863_1184183_+	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_014905522.1|1184201_1185875_+	MCE family protein	NA	NA	NA	NA	NA
WP_010931111.1|1185879_1186548_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010931110.1|1186704_1190526_+	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930800.1|1190856_1191807_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812857.1|1191828_1192974_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|1193122_1194052_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812851.1|1194048_1195137_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_010931109.1|1195133_1195937_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812846.1|1195933_1196665_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931108.1|1196722_1198012_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931107.1|1198108_1198711_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812839.1|1203264_1203603_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931105.1|1204310_1204577_+	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_005012067.1|1206283_1207234_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931103.1|1207230_1208562_-	MFS transporter	NA	NA	NA	NA	NA
WP_010931102.1|1209822_1211823_+	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003819722.1|1211815_1212457_+	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA	NA
WP_003809276.1|1212453_1212861_+	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA	NA
WP_010931101.1|1212857_1213658_+	SURF1 family protein	NA	NA	NA	NA	NA
WP_010931100.1|1213732_1214437_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931099.1|1214468_1215263_+	N-formylglutamate deformylase	NA	NA	NA	NA	NA
WP_005013747.1|1215259_1216210_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995489.1|1216308_1217259_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812014.1|1217357_1217792_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_010931098.1|1217874_1220211_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_010930525.1|1220402_1221419_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1268813	1349688	4105954	tRNA,transposase	Bacillus_virus(25.0%)	58	NA	NA
WP_010927663.1|1268813_1269764_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1269760_1270711_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931069.1|1270971_1272000_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010931068.1|1272079_1273378_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_003816847.1|1273374_1273956_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010931067.1|1274268_1278315_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	67.4	6.3e-160
WP_010931066.1|1278555_1286217_+	hemagglutinin repeat-containing protein	NA	A0A0R6PJK4	Moraxella_phage	30.9	7.3e-24
WP_005012067.1|1286213_1287164_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931065.1|1288303_1288777_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931064.1|1288916_1289537_-	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931063.1|1289672_1290473_+	aldolase	NA	NA	NA	NA	NA
WP_003810897.1|1290527_1291619_+	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_010931062.1|1291640_1292084_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_010931061.1|1292112_1292745_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA	NA
WP_003810909.1|1292855_1293272_+|tRNA	aminoacyl-tRNA hydrolase	tRNA	NA	NA	NA	NA
WP_010931060.1|1293264_1293957_+	DUF2238 domain-containing protein	NA	NA	NA	NA	NA
WP_010931059.1|1294063_1294438_+	MAPEG family protein	NA	NA	NA	NA	NA
WP_010931058.1|1294514_1295324_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931057.1|1295419_1296364_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA	NA
WP_003816577.1|1296402_1297374_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003810921.1|1297464_1297902_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443733.1|1297960_1298842_-	NRDE family protein	NA	NA	NA	NA	NA
WP_010931054.1|1299845_1300706_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931053.1|1300738_1302121_+	FAD-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	28.4	7.9e-30
WP_010931052.1|1302117_1303137_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247407.1|1303509_1304004_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931051.1|1304011_1304752_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931050.1|1304832_1306437_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_010931049.1|1306476_1307265_-	DeoR family transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.4	2.0e-22
WP_010931048.1|1308467_1309556_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.1	9.7e-15
WP_010931047.1|1310436_1311249_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_004568502.1|1311261_1311570_+	DUF2160 domain-containing protein	NA	NA	NA	NA	NA
WP_010931046.1|1311687_1313418_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019249399.1|1313419_1314565_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931044.1|1314694_1315363_-	DUF502 domain-containing protein	NA	NA	NA	NA	NA
WP_003810957.1|1315484_1315952_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_019247521.1|1316087_1317470_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_014486086.1|1317466_1318591_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010931042.1|1318587_1321224_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010931070.1|1321639_1322590_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1326336_1326948_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1327170_1328631_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1328727_1330320_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1330673_1330931_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1330932_1332273_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1332368_1333058_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1333070_1334501_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1336225_1337047_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1337057_1338629_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1338657_1339635_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1339661_1340465_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1340461_1341256_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1341263_1342499_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1342491_1342926_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1343675_1344626_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1345247_1346975_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1347086_1348445_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_005013747.1|1348737_1349688_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1468533	1520686	4105954	tRNA,transposase	Salmonella_phage(25.0%)	45	NA	NA
WP_005013747.1|1468533_1469484_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814065.1|1469650_1470004_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1470016_1470379_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1470420_1470846_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1471048_1472305_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1472503_1473484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1473633_1474875_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1474973_1475924_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1475932_1476628_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1479449_1480049_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1480059_1482225_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1482248_1484033_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1484032_1484122_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1484816_1485089_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1485088_1487155_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1487151_1488102_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1488200_1489151_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1489266_1489599_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1489595_1490282_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1490268_1491228_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1491269_1493630_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1493629_1494262_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1494363_1495704_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1495750_1497106_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1497231_1497876_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1497820_1498138_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1498410_1498926_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1499019_1499181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1499196_1499952_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1500290_1500497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1500504_1501164_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1501458_1503663_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1503773_1504997_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1505119_1506094_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1506161_1507355_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1507369_1508170_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1508166_1510023_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1510019_1510625_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1510643_1512029_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1512754_1513981_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1514069_1514852_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1514950_1515901_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1515927_1516701_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1516712_1517954_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1519735_1520686_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1564611	1632697	4105954	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1564611_1565100_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1565217_1565796_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1565901_1566270_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1566368_1567319_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1567325_1568438_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1569124_1570327_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1570362_1570509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1570530_1573191_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1573203_1576608_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1577275_1579501_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1579547_1579874_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1579924_1580533_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1580631_1581582_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1581651_1582416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1582412_1583012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1583115_1583967_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1584026_1584653_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1584649_1585600_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1585698_1586811_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1586800_1587802_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1587907_1589419_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1589415_1590720_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1590831_1591392_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1591659_1592214_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1592669_1592885_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1593139_1595737_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1595733_1596921_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1597579_1598194_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1598282_1599410_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1599421_1600327_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1601219_1602170_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1602351_1603104_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1603172_1603832_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1603828_1604557_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1604569_1606849_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1606873_1607077_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1607118_1607751_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1607886_1608804_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1608800_1609514_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1609751_1610522_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1610526_1611126_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1611370_1612861_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1612919_1613204_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1613341_1613497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1613769_1614696_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1614832_1615573_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1615739_1617116_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1617297_1618203_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1619854_1621657_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1621783_1622425_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1622523_1623474_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1623495_1624716_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1624901_1626314_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1626377_1627445_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1627444_1628932_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1628941_1629886_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1630045_1630744_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1630821_1631727_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1631746_1632697_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1668646	1724237	4105954	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1668646_1669597_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1669655_1670429_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1670421_1671978_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1671974_1672925_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1674251_1674854_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1675093_1675795_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1675788_1676571_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1676755_1677706_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1677804_1678542_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1678731_1679490_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1679536_1680526_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1680703_1681672_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1683211_1684180_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1684188_1685130_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1685603_1686614_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1686604_1688119_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1688115_1689462_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1689464_1690499_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1690548_1692174_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1692726_1693677_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1693781_1694729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1694782_1696597_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1696589_1697264_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1697393_1700468_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1700481_1700781_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1701095_1701719_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1701962_1702832_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1702809_1703754_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1703839_1704766_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1704878_1705658_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1705648_1706845_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1706875_1707826_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1708047_1708737_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1708801_1709557_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1709608_1710601_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1710610_1711564_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1711679_1712642_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1714043_1714472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1714468_1715419_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1715712_1716450_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1716873_1718061_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1718064_1718445_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1720164_1721136_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1721149_1721863_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1721867_1722785_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1722891_1723188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1723286_1724237_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1745895	1837866	4105954	tRNA,transposase	Moraxella_phage(25.0%)	60	NA	NA
WP_005012067.1|1745895_1746846_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905945.1|1746944_1747895_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810867.1|1747918_1748383_-	GatB/YqeY domain-containing protein	NA	A0A0K2FLI9	Brevibacillus_phage	32.4	3.9e-05
WP_010930799.1|1748529_1749738_+	NO-inducible flavohemoprotein	NA	NA	NA	NA	NA
WP_010930798.1|1749781_1750219_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930797.1|1750337_1751627_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_010930048.1|1754367_1755318_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930595.1|1755416_1756433_-	folate-binding protein YgfZ	NA	NA	NA	NA	NA
WP_010930596.1|1756611_1757646_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_003811733.1|1757642_1758269_+	dTMP kinase	NA	A0A1L2BX49	Bacteriophage	35.1	1.6e-22
WP_010930597.1|1758265_1759318_+	DNA polymerase III subunit delta'	NA	NA	NA	NA	NA
WP_010930598.1|1759367_1760138_+	TatD family hydrolase	NA	NA	NA	NA	NA
WP_010930599.1|1760188_1761025_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA	NA
WP_010930600.1|1761220_1761961_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930601.1|1762035_1762779_+	glutamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_020699606.1|1763455_1764214_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	6.7e-31
WP_003811716.1|1765351_1766641_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_010930602.1|1768251_1769499_-	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930603.1|1769508_1771218_-	thiamine pyrophosphate-binding protein	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	27.3	5.9e-35
WP_003811709.1|1771214_1772153_-	citrate lyase subunit beta	NA	NA	NA	NA	NA
WP_003811706.1|1772149_1773433_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010930604.1|1773436_1773919_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930605.1|1773919_1774906_-	DctP family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003811701.1|1775078_1775798_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|1775914_1776865_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930606.1|1780050_1781400_+	amidase	NA	NA	NA	NA	NA
WP_010930607.1|1781457_1782252_+	putative hydro-lyase	NA	NA	NA	NA	NA
WP_003816497.1|1782385_1783261_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_014486076.1|1783304_1787021_-	virulence factors two-component system sensor histidine kinase BvgS	NA	A0A1V0SGX0	Hokovirus	32.0	4.2e-33
WP_010930609.1|1787029_1787659_-	virulence factors two-component system response regulator BvgA	NA	NA	NA	NA	NA
WP_010930610.1|1788085_1798858_+	filamentous hemagglutinin/adhesin	NA	A0A0R6PJK4	Moraxella_phage	32.5	3.6e-29
WP_010930611.1|1799620_1800355_+	molecular chaperone FimB	NA	NA	NA	NA	NA
WP_010930612.1|1800417_1803039_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA	NA
WP_019247160.1|1803019_1804150_+	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_010930614.1|1804142_1805897_+	filamentous hemagglutinin transporter protein FhaC	NA	NA	NA	NA	NA
WP_010930615.1|1807214_1807715_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930616.1|1807721_1808696_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930617.1|1810252_1810744_-	TRAP transporter small permease	NA	NA	NA	NA	NA
WP_010930618.1|1810757_1811723_-	TRAP transporter substrate-binding protein DctP	NA	NA	NA	NA	NA
WP_019247163.1|1811743_1812445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930620.1|1813619_1814132_+	winged helix DNA-binding protein	NA	NA	NA	NA	NA
WP_010930621.1|1814210_1817834_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930622.1|1817847_1818879_-	C45 family peptidase	NA	NA	NA	NA	NA
WP_003809983.1|1820038_1820872_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_010930623.1|1820885_1821644_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930624.1|1821805_1822798_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930625.1|1823015_1823792_-	RNA methyltransferase	NA	NA	NA	NA	NA
WP_010930626.1|1823899_1824682_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003809992.1|1824808_1826395_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	42.0	1.9e-35
WP_010930627.1|1826419_1827283_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_019247344.1|1827490_1828267_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_003809999.1|1828259_1828769_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010930629.1|1828897_1829581_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930630.1|1829820_1831281_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2K9L6B7	Tupanvirus	27.9	2.5e-34
WP_003820119.1|1831300_1831945_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA	NA
WP_003810007.1|1831981_1832947_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_023997643.1|1833045_1833996_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930632.1|1834125_1835091_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_010930633.1|1835190_1836456_+	aspartate kinase	NA	NA	NA	NA	NA
WP_010929632.1|1836849_1837866_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	1958051	2027703	4105954	tRNA,transposase	Staphylococcus_phage(16.67%)	55	NA	NA
WP_003818515.1|1958051_1960709_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	39.0	3.3e-173
WP_010930709.1|1960786_1961989_-	MFS transporter	NA	NA	NA	NA	NA
WP_003810260.1|1961985_1962498_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247822.1|1962620_1963058_-	HU family DNA-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|1963334_1964285_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077069014.1|1964383_1965334_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930710.1|1965587_1967393_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_010930711.1|1967506_1967674_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003810297.1|1967737_1967974_-	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930712.1|1968342_1969542_-	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_010929591.1|1971057_1972008_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003818523.1|1972459_1973461_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810306.1|1973633_1974491_+	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003810308.1|1974487_1975750_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003818524.1|1975850_1976225_+	tautomerase family protein	NA	NA	NA	NA	NA
WP_010930713.1|1976297_1977485_+	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_010930714.1|1977569_1978340_+	spermidine synthase	NA	NA	NA	NA	NA
WP_010930715.1|1978453_1979218_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930716.1|1979168_1980470_+	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930717.1|1980466_1981273_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003818532.1|1983017_1983989_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003818533.1|1984145_1984658_+	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_010930718.1|1984816_1985791_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930719.1|1986791_1987586_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_003818535.1|1987611_1988418_-	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_003810329.1|1988528_1989119_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|1989129_1990308_+	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_010930721.1|1990410_1990785_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_019248531.1|1991037_1992369_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_019247651.1|1992435_1995666_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_003810344.1|1997156_1997903_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_010930724.1|1997987_1998449_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_010930725.1|1998486_1999545_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930726.1|1999507_2001337_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_003810356.1|2001376_2001949_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930727.1|2003373_2004195_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_010930728.1|2004513_2005836_+	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930729.1|2006195_2006831_+	membrane protein	NA	NA	NA	NA	NA
WP_010930730.1|2006790_2007741_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930731.1|2008611_2009484_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930732.1|2009561_2010701_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930733.1|2011059_2012316_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_003816691.1|2012321_2012849_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_003816690.1|2012853_2013672_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816687.1|2013671_2014394_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930735.1|2014415_2014730_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930736.1|2014747_2015896_+	CoA transferase	NA	NA	NA	NA	NA
WP_010930737.1|2015926_2016802_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816680.1|2016798_2018118_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_014486081.1|2018190_2019387_-	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_010930739.1|2019397_2020885_-	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_010930740.1|2023479_2024379_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023852887.1|2024516_2025482_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005015810.1|2025580_2026531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2026752_2027703_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2039199	2088595	4105954	transposase	Erysipelothrix_phage(16.67%)	45	NA	NA
WP_005013747.1|2039199_2040150_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812172.1|2041287_2041584_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247707.1|2041758_2043111_+	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.6	2.9e-45
WP_010930153.1|2043253_2044270_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930748.1|2046249_2047263_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_010930749.1|2047349_2048255_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003812179.1|2048411_2048756_+	exported protein	NA	NA	NA	NA	NA
WP_010930750.1|2048913_2049372_+	(2Fe-2S)-binding protein	NA	NA	NA	NA	NA
WP_010930751.1|2049385_2051602_+	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA	NA
WP_003812183.1|2051598_2052660_+	XdhC family protein	NA	NA	NA	NA	NA
WP_010930752.1|2052688_2053663_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930753.1|2053614_2054433_-	hypothetical protein	NA	A0A1B1INV8	uncultured_Mediterranean_phage	28.8	2.3e-16
WP_003812191.1|2054445_2055054_-	LON peptidase substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930754.1|2055228_2055624_+	VOC family protein	NA	NA	NA	NA	NA
WP_010930755.1|2055642_2057082_+	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	37.4	7.4e-55
WP_003812199.1|2057110_2057458_+	GFA family protein	NA	NA	NA	NA	NA
WP_010929577.1|2057476_2058427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2059079_2060030_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997035.1|2060113_2061931_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_019247659.1|2062004_2062652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|2062664_2063594_-	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_014905663.1|2063763_2064228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003816977.1|2064475_2065156_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003816975.1|2065204_2066896_+	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_010930760.1|2066911_2067463_-	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816971.1|2067459_2067831_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930761.1|2067943_2068780_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_029443822.1|2068790_2069315_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|2069412_2069592_+	DUF3008 family protein	NA	NA	NA	NA	NA
WP_010930763.1|2069721_2070696_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003816964.1|2070826_2071183_+	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930764.1|2071172_2072048_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010930765.1|2072146_2073031_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930766.1|2073052_2074348_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_003816959.1|2075296_2075947_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930767.1|2076034_2077555_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930768.1|2077812_2079678_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|2080723_2081674_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268681.1|2081691_2081832_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930769.1|2082646_2083006_-	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_010930770.1|2082993_2084430_-	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930771.1|2084426_2085080_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930772.1|2085076_2086270_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930773.1|2086373_2087648_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_005012067.1|2087644_2088595_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2099799	2140490	4105954	tRNA,transposase,protease	Klosneuvirus(25.0%)	37	NA	NA
WP_005013747.1|2099799_2100750_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2100848_2101799_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122784.1|2101758_2102172_-	transcriptional regulator	NA	A0A222YXG1	Escherichia_phage	59.0	3.8e-36
WP_003816708.1|2102456_2102756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930783.1|2103165_2105448_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	30.1	3.2e-36
WP_124740709.1|2105913_2106108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930784.1|2106133_2108164_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.9	1.0e-65
WP_006218592.1|2108183_2108396_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003810720.1|2108673_2109213_-	phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023852902.1|2109326_2110622_-	adenylosuccinate synthase	NA	A0A160ER07	Powai_lake_megavirus	33.5	3.0e-63
WP_010930786.1|2110698_2111856_-	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_010930787.1|2112039_2112939_-|protease	protease modulator HflC	protease	NA	NA	NA	NA
WP_010930788.1|2112957_2114262_-|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930789.1|2114227_2115334_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003810707.1|2115421_2115658_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930790.1|2115796_2116867_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810703.1|2116870_2118226_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003810701.1|2118252_2119413_-	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_010930791.1|2119415_2120054_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_023995843.1|2120055_2121342_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930793.1|2121400_2122696_-	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_003810693.1|2122702_2123209_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004568542.1|2123205_2124354_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810689.1|2124381_2124807_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_010930794.1|2125129_2128012_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_023852900.1|2128104_2128860_-	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930796.1|2129625_2130975_+	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_076879566.1|2131073_2132024_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2132122_2133073_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930594.1|2133146_2133620_+	RidA family protein	NA	NA	NA	NA	NA
WP_010930593.1|2133645_2134854_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_003816734.1|2134850_2135624_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_014905757.1|2135623_2136247_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_010926757.1|2136412_2136673_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_010930591.1|2136976_2137558_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004568544.1|2137624_2137879_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930590.1|2137865_2140490_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
>prophage 18
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2168273	2233822	4105954	tRNA,transposase,protease	Lake_Baikal_phage(20.0%)	58	NA	NA
WP_010929577.1|2168273_2169224_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|2169424_2170234_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_005013747.1|2170358_2171309_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930572.1|2171305_2172199_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_003812452.1|2172323_2172518_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_003812453.1|2172517_2172859_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_010930571.1|2172868_2174731_-	Fe-S protein assembly chaperone HscA	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	42.4	3.0e-101
WP_003812456.1|2174860_2175373_-	Fe-S protein assembly co-chaperone HscB	NA	NA	NA	NA	NA
WP_003812458.1|2175375_2175699_-	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	52.8	6.8e-25
WP_003812460.1|2175700_2176111_-	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	79.0	7.5e-53
WP_010930570.1|2176148_2177360_-	IscS subfamily cysteine desulfurase	NA	NA	NA	NA	NA
WP_003812463.1|2177377_2177890_-	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_010930569.1|2178105_2178597_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_010930568.1|2178849_2180886_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_019247244.1|2180963_2182166_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_010930566.1|2182294_2182945_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	3.3e-10
WP_005012067.1|2184502_2185453_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247934.1|2186023_2186236_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247935.1|2186253_2186985_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812478.1|2187019_2187661_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010930565.1|2187653_2188322_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010930564.1|2190534_2191311_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930563.1|2191332_2192490_-	thiolase	NA	NA	NA	NA	NA
WP_003812491.1|2192486_2192918_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_015063637.1|2192914_2193718_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930561.1|2193731_2194133_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010930560.1|2194199_2195171_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930559.1|2195236_2196460_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247936.1|2196687_2197638_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930557.1|2197761_2200215_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.0	1.5e-220
WP_010930556.1|2200403_2201708_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	53.8	3.2e-129
WP_003812508.1|2201812_2202466_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.5	6.8e-56
WP_010930555.1|2202468_2203779_-	trigger factor	NA	NA	NA	NA	NA
WP_010930554.1|2203975_2204536_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.0e-23
WP_010930553.1|2204647_2204848_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.4	7.4e-14
WP_003812519.1|2205193_2205760_-	DUF924 family protein	NA	NA	NA	NA	NA
WP_010930551.1|2205843_2206047_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	1.6e-16
WP_003812524.1|2206353_2206674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003812526.1|2206715_2206997_-	membrane protein	NA	NA	NA	NA	NA
WP_010930550.1|2207071_2208328_-	autotransporter Phg	NA	NA	NA	NA	NA
WP_010930549.1|2208710_2209040_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003812536.1|2210610_2211432_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_010930548.1|2211431_2212571_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_019247938.1|2212577_2213474_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_010930546.1|2213470_2215396_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	31.8	1.1e-66
WP_010926400.1|2215755_2218368_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_003812546.1|2218420_2220721_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	35.9	9.9e-110
WP_003812548.1|2220717_2221926_-	fatty acid desaturase	NA	NA	NA	NA	NA
WP_010930545.1|2222187_2222562_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2222558_2223509_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2223607_2225602_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2225661_2226627_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2226616_2229478_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2229480_2229987_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2230091_2231300_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2231301_2232240_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2232401_2232875_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2232871_2233822_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 19
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2319999	2383577	4105954	transposase,protease	uncultured_Caudovirales_phage(11.11%)	48	NA	NA
WP_010931070.1|2319999_2320950_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2321251_2321728_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2322351_2323989_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2324019_2325333_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2325466_2325784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2325884_2327207_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2327203_2328154_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2328252_2329203_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2329732_2330755_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2330783_2331614_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2331630_2333328_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2333392_2334469_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2334628_2335492_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2335522_2336092_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2336108_2336960_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2338017_2338899_+|protease	protease HtpX	protease	NA	NA	NA	NA
WP_010930842.1|2338973_2339963_-	quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930843.1|2340025_2340976_-	DMT family transporter	NA	NA	NA	NA	NA
WP_003813147.1|2341038_2341896_+	DMT family transporter	NA	NA	NA	NA	NA
WP_003813149.1|2341955_2342444_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930844.1|2344016_2345207_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930845.1|2345203_2346790_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010930846.1|2346808_2347876_-	tartrate dehydrogenase	NA	NA	NA	NA	NA
WP_010930847.1|2347980_2349525_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	25.4	3.1e-14
WP_010930848.1|2349944_2351519_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930849.1|2351626_2352643_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003813165.1|2352639_2353479_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930850.1|2353483_2355121_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	3.6e-21
WP_005013747.1|2355117_2356068_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930851.1|2356210_2357485_+	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	1.6e-24
WP_010930852.1|2357514_2357805_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_047122810.1|2357877_2358891_+	histone deacetylase family protein	NA	A0A2K9L4C2	Tupanvirus	35.2	1.7e-42
WP_010930854.1|2358910_2360173_+	Zn-dependent hydrolase	NA	NA	NA	NA	NA
WP_010930855.1|2360175_2361099_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010930856.1|2361095_2362589_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930857.1|2362599_2363532_-	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_076879554.1|2363713_2365039_+	aspartate aminotransferase family protein	NA	A0A1C9EHH3	Mycobacterium_phage	22.5	1.8e-07
WP_023853659.1|2365073_2366417_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_023853666.1|2366489_2368010_-	DUF853 domain-containing protein	NA	A0A248XCZ8	Klebsiella_phage	44.9	1.7e-78
WP_010930861.1|2368164_2368896_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010930862.1|2368963_2370304_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_010930863.1|2370319_2371231_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_010930864.1|2371221_2371815_+	nicotinate (nicotinamide) nucleotide adenylyltransferase	NA	NA	NA	NA	NA
WP_003813196.1|2371876_2372263_+	ribosome silencing factor	NA	NA	NA	NA	NA
WP_003813199.1|2372274_2372745_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_010930865.1|2372756_2373380_+	septum formation inhibitor Maf	NA	NA	NA	NA	NA
WP_010930866.1|2373400_2376148_-	autotransporter Vag8	NA	NA	NA	NA	NA
WP_005012808.1|2382626_2383577_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2528518	2586762	4105954	tRNA,transposase	Planktothrix_phage(28.57%)	53	NA	NA
WP_005012067.1|2528518_2529469_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2529948_2530605_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2530619_2532287_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2532289_2532919_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2533130_2534225_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2534369_2535182_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2535185_2536889_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2536939_2538070_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2538256_2539333_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2539414_2540065_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2540079_2541483_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2541766_2542585_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2542581_2543286_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2544185_2545301_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2545334_2545709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2545731_2546889_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2546901_2547135_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2547769_2550739_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2550753_2550963_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2551114_2551744_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2551740_2553831_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2553854_2554535_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2554531_2555092_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2555098_2556196_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2556348_2556942_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2556938_2558231_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2558244_2558787_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2558796_2559633_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2559666_2560728_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2560769_2561822_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2561837_2562140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2562281_2563232_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930368.1|2563410_2565105_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2565101_2566187_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2566234_2567134_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2567144_2567789_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2568810_2572053_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2572063_2573218_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2573444_2574407_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_005013747.1|2574505_2575456_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2575554_2576505_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2576514_2577204_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2577263_2577701_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2577746_2578640_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2578687_2579860_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2579856_2581011_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2581207_2581558_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2581547_2581982_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2581998_2582949_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2583096_2583564_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2583544_2584702_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2584767_2585694_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2585811_2586762_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2629041	2695541	4105954	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2629041_2629992_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2630361_2630934_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2630936_2631947_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2631939_2632440_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2632450_2632792_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2632803_2633595_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2633611_2633881_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2633903_2634692_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2634738_2635755_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2635971_2637414_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2637592_2639212_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_010930331.1|2639332_2641153_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	52.6	6.4e-11
WP_010930330.1|2641231_2642764_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2642797_2644444_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2644513_2645536_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2645553_2646687_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2646689_2647379_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2647378_2648164_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2648207_2648972_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2649010_2650432_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2650497_2651202_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2651249_2651669_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2651681_2652089_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2652272_2652983_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2653109_2653400_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2653417_2653900_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2658405_2659560_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2659865_2660882_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2661128_2661917_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2661983_2662664_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2662660_2663431_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2663529_2664480_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2664535_2665453_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2665463_2666642_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2666661_2667657_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2669245_2669854_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2669841_2670882_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2670899_2671862_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2671858_2673052_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2673048_2673846_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2673871_2674858_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2674876_2676916_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2677117_2677798_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2677811_2678723_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2678719_2679298_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2679436_2680342_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2680349_2683769_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2683756_2686357_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2687312_2687945_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2688338_2689097_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2689093_2690296_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2690483_2691434_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2692341_2693487_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2693473_2694229_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2694345_2694525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2694590_2695541_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2893880	2967205	4105954	tRNA,transposase,protease	Catovirus(22.22%)	52	NA	NA
WP_010930211.1|2893880_2895236_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003813618.1|2896714_2897437_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930207.1|2897491_2898475_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|2898604_2899555_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813621.1|2899551_2900454_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930206.1|2900541_2901300_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023853245.1|2901312_2902404_-	cell division protein ZapE	NA	NA	NA	NA	NA
WP_003813626.1|2902501_2903929_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_010930204.1|2904158_2905373_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813631.1|2905418_2908289_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930202.1|2910699_2911188_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930201.1|2911313_2914010_+	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930200.1|2914164_2916447_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_019248935.1|2916620_2917244_+	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930198.1|2917342_2918293_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812405.1|2918339_2918894_-	transcription elongation factor GreB	NA	NA	NA	NA	NA
WP_003816844.1|2918961_2919807_-	PHP domain-containing protein	NA	NA	NA	NA	NA
WP_019248398.1|2919876_2920845_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_023995083.1|2920844_2921708_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010930196.1|2924540_2928467_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010930194.1|2929202_2932433_-	autotransporter SphB3	NA	NA	NA	NA	NA
WP_010928340.1|2932714_2933542_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_003812422.1|2933575_2934271_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	38.6	7.0e-35
WP_019247537.1|2934263_2935544_-	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930192.1|2935553_2936531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930191.1|2936512_2938213_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.3	1.3e-50
WP_010926448.1|2938315_2939419_+	peptide chain release factor 2	NA	NA	NA	NA	NA
WP_010926447.1|2939449_2940205_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930190.1|2940211_2941732_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	36.0	1.2e-82
WP_010930189.1|2941774_2942077_+	membrane protein	NA	NA	NA	NA	NA
WP_003812436.1|2942073_2942706_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930188.1|2942784_2944650_-	long-chain fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	23.3	9.3e-50
WP_020699602.1|2944646_2945441_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	23.3	1.2e-11
WP_010930186.1|2945469_2946585_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930185.1|2947489_2948368_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930184.1|2948367_2949192_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	22.7	1.0e-08
WP_010929591.1|2949359_2950310_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930183.1|2950522_2953372_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930182.1|2953353_2954082_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_019248549.1|2954222_2955686_-	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930180.1|2955682_2956054_-	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|2956071_2957385_+	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_003812703.1|2957421_2957880_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2957992_2958943_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930178.1|2958939_2959953_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_003812707.1|2960092_2961079_+	homoserine kinase	NA	NA	NA	NA	NA
WP_161633091.1|2961437_2962145_-	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|2962725_2963676_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809618.1|2963827_2964430_-	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010930175.1|2964448_2965081_+	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_162096758.1|2965125_2965377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930174.1|2965318_2967205_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
>prophage 23
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	2978930	3028650	4105954	holin,tRNA,transposase	uncultured_Mediterranean_phage(60.0%)	43	NA	NA
WP_005013747.1|2978930_2979881_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809441.1|2979907_2980372_-	barstar family protein	NA	NA	NA	NA	NA
WP_014486065.1|2981578_2983867_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930165.1|2983983_2984856_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930164.1|2984898_2986053_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930163.1|2986087_2986918_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_023853525.1|2987001_2988546_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930161.1|2988588_2988948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819794.1|2988949_2989363_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003809432.1|2989403_2989721_-	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003809431.1|2989805_2990522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930160.1|2990785_2992207_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_005015810.1|2994879_2995830_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633096.1|2995809_2996064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853536.1|2996402_2997419_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930157.1|2997754_2998396_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003809423.1|2998486_2999923_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_023853534.1|3000080_3001154_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_010930155.1|3001150_3002287_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_003809416.1|3002431_3002776_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930154.1|3002842_3004723_+	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809411.1|3004772_3005708_+	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010931363.1|3006040_3007057_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_015041211.1|3007994_3009422_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010930151.1|3009418_3010441_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.4	8.7e-50
WP_003809396.1|3010430_3010904_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_010930149.1|3011044_3011932_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_014486064.1|3011928_3013572_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA	NA
WP_010930148.1|3013568_3014618_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010931363.1|3015406_3016423_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003817162.1|3016522_3017155_-	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_003811911.1|3017163_3017553_-	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_010930146.1|3017605_3018658_-	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_023995045.1|3019521_3020286_-	Tar ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_003811919.1|3020359_3020860_-	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930144.1|3020874_3022932_-	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_019247393.1|3022958_3023252_-	response regulator	NA	NA	NA	NA	NA
WP_003817154.1|3023353_3024301_-	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_003811927.1|3024313_3025189_-	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003811929.1|3025309_3025870_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_010930143.1|3025904_3026228_-	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811933.1|3026663_3027401_+	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_005012067.1|3027699_3028650_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3036860	3099015	4105954	transposase	Erysipelothrix_phage(20.0%)	46	NA	NA
WP_023853531.1|3036860_3037994_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930137.1|3038097_3038739_+	glutathione transferase	NA	NA	NA	NA	NA
WP_010930136.1|3038893_3041242_+	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_003809454.1|3041238_3042177_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930135.1|3042202_3043393_+	acetate kinase	NA	NA	NA	NA	NA
WP_010930134.1|3043389_3044163_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930133.1|3044192_3045386_-	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930132.1|3045503_3046514_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930131.1|3046531_3048568_-	transketolase	NA	NA	NA	NA	NA
WP_010930130.1|3048762_3049503_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010929969.1|3049601_3050552_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929584.1|3050650_3051601_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003817151.1|3051643_3052819_+	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010930129.1|3053040_3054831_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_010930128.1|3054843_3056505_-	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930127.1|3056517_3059223_-	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_003817147.1|3059515_3061270_+	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930126.1|3061266_3061893_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003811948.1|3061889_3062741_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_019248379.1|3062816_3064931_+	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_010930124.1|3065117_3065732_+	SCO family protein	NA	NA	NA	NA	NA
WP_010930123.1|3065877_3066129_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_014486063.1|3066198_3067581_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930121.1|3067577_3070757_-	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_029443805.1|3071564_3072482_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930119.1|3072533_3073265_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_010926548.1|3073324_3073897_+	chorismate lyase	NA	NA	NA	NA	NA
WP_010929632.1|3075405_3076422_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|3076559_3077609_-	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_005012067.1|3077713_3078664_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813314.1|3078759_3079485_-	CoA pyrophosphatase	NA	NA	NA	NA	NA
WP_003813315.1|3079695_3080076_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_014905652.1|3080381_3081254_+	EamA family transporter	NA	NA	NA	NA	NA
WP_023852686.1|3081261_3081642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852693.1|3081795_3083070_-	PA0069 family radical SAM protein	NA	NA	NA	NA	NA
WP_010930113.1|3084557_3085466_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA	NA
WP_010930112.1|3086263_3087328_-	sulfate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.3	3.8e-24
WP_170954292.1|3089164_3090166_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003813333.1|3090388_3091030_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_003821527.1|3091112_3092939_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010930111.1|3093182_3094112_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_010930110.1|3094111_3094861_-	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_003821521.1|3094932_3095847_-	histone deacetylase family protein	NA	A0A2K9KZC4	Tupanvirus	34.7	9.8e-45
WP_010930108.1|3095866_3097012_+	lytic murein transglycosylase B	NA	NA	NA	NA	NA
WP_014486062.1|3097072_3097984_-	cysteine synthase CysM	NA	A0A1X9I5K7	Streptococcus_phage	38.8	8.0e-47
WP_005012067.1|3098064_3099015_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3118437	3173567	4105954	transposase	Bacillus_phage(28.57%)	48	NA	NA
WP_005012808.1|3118437_3119388_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566317.1|3119517_3119910_+	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_003821497.1|3120186_3121098_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_010930088.1|3121222_3122197_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|3122193_3123144_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810865.1|3123242_3124328_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_010930072.1|3124425_3124836_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810859.1|3125451_3127365_+	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930071.1|3127500_3130113_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_019248496.1|3130114_3130849_-	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_003810851.1|3131012_3132194_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_003810850.1|3132190_3132403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930069.1|3132399_3133380_-	aldo/keto reductase	NA	NA	NA	NA	NA
WP_010930068.1|3133425_3134253_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_023852913.1|3134402_3136217_+	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_003810840.1|3136271_3136655_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930066.1|3136651_3137602_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810839.1|3137714_3137966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|3138471_3139590_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810832.1|3139709_3139922_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930064.1|3140081_3140303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3140355_3141306_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930062.1|3142482_3143853_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_010930061.1|3143885_3144677_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930060.1|3144689_3145745_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019247557.1|3145770_3146646_-	amidohydrolase	NA	NA	NA	NA	NA
WP_023852826.1|3146751_3147000_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003819989.1|3147034_3148489_-	carboxylase	NA	NA	NA	NA	NA
WP_004568140.1|3148485_3149007_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_010930057.1|3149035_3150388_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029444137.1|3150611_3153500_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930056.1|3155644_3156946_+	phospholipase A	NA	NA	NA	NA	NA
WP_010930055.1|3156960_3157677_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930054.1|3157958_3158639_+	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_003809770.1|3158650_3158818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023852837.1|3158926_3159073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930052.1|3159166_3159826_-	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_010930051.1|3160224_3162057_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_005012067.1|3162053_3163004_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814007.1|3164167_3165883_+	acetolactate synthase 3 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	30.3	3.1e-60
WP_003814006.1|3165893_3166385_+	acetolactate synthase small subunit	NA	NA	NA	NA	NA
WP_010930015.1|3166457_3167474_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_003814004.1|3167641_3168421_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003814003.1|3168439_3168967_-	lipoprotein	NA	NA	NA	NA	NA
WP_003814002.1|3169260_3169530_+	30S ribosomal protein S15	NA	NA	NA	NA	NA
WP_003821234.1|3169620_3171780_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA	NA
WP_003814000.1|3171900_3172620_+	lipoprotein	NA	NA	NA	NA	NA
WP_005013747.1|3172616_3173567_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3189152	3261165	4105954	holin,transposase	Leptospira_phage(20.0%)	60	NA	NA
WP_023994644.1|3189152_3190169_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813987.1|3190365_3191190_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_076879542.1|3191267_3192191_-	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_010930021.1|3192361_3193513_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010930022.1|3193516_3194548_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_010930023.1|3194676_3195648_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|3195672_3197757_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_003813981.1|3197823_3198816_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930024.1|3198924_3200259_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_010930025.1|3200284_3202297_-	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023853163.1|3202293_3204342_-	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930027.1|3204445_3205093_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003813974.1|3205233_3205728_+	azurin	NA	NA	NA	NA	NA
WP_010926969.1|3205771_3206443_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930029.1|3206457_3207951_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930030.1|3207947_3211061_-	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930031.1|3211073_3212180_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930032.1|3212303_3212972_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|3213192_3214143_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813960.1|3214225_3216184_+|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_010930033.1|3216211_3216913_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019248500.1|3217059_3217875_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_003813954.1|3217871_3218687_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_003813952.1|3218703_3219507_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813951.1|3219490_3219925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003813949.1|3219921_3220356_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_019247352.1|3220357_3220912_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929591.1|3220929_3221880_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930034.1|3222192_3223350_+	porin	NA	NA	NA	NA	NA
WP_003813943.1|3223538_3223898_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA	NA
WP_003813941.1|3223934_3224411_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA	NA
WP_010926963.1|3224485_3225109_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA	NA
WP_010930035.1|3225111_3226368_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA	NA
WP_003813932.1|3226413_3226908_+	NADH-quinone oxidoreductase subunit NuoE	NA	NA	NA	NA	NA
WP_003813930.1|3226904_3228272_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA	NA
WP_010930036.1|3228287_3230615_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA	NA
WP_003813926.1|3230614_3231688_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA	NA
WP_003813924.1|3231709_3232198_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA	NA
WP_003813921.1|3232215_3232863_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA	NA
WP_003813920.1|3232859_3233168_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA	NA
WP_010930037.1|3233185_3235198_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA	NA
WP_019247436.1|3235194_3236697_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA	NA
WP_019248505.1|3236707_3238192_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA	NA
WP_003813915.1|3238208_3238538_+	DUF2818 family protein	NA	NA	NA	NA	NA
WP_010930039.1|3238838_3241070_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003813909.1|3241281_3243552_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010930041.1|3243664_3244183_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930042.1|3244192_3244969_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813904.1|3244965_3246756_-	acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	2.0e-25
WP_010930044.1|3246815_3247796_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930045.1|3247933_3248851_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930046.1|3248979_3249840_-	phosphoserine phosphatase SerB	NA	NA	NA	NA	NA
WP_010926959.1|3249875_3253331_-	transcription-repair coupling factor	NA	NA	NA	NA	NA
WP_003813895.1|3253360_3254044_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003813893.1|3254040_3254529_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_041337087.1|3254627_3255578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003813068.1|3255574_3256594_-	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	35.7	1.5e-49
WP_010930049.1|3256603_3259312_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	24.0	2.8e-15
WP_010930050.1|3259459_3260116_+	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|3260214_3261165_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3312758	3355665	4105954	transposase	Planktothrix_phage(50.0%)	34	NA	NA
WP_005012808.1|3312758_3313709_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929985.1|3313810_3314239_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929984.1|3314311_3316507_+	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3316728_3317679_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852739.1|3317638_3318163_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_003814467.1|3318294_3319266_+	FecR family protein	NA	NA	NA	NA	NA
WP_010929983.1|3319385_3321830_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_010929982.1|3321845_3322436_-	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|3322679_3323630_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814462.1|3323787_3325053_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814461.1|3325086_3326184_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_005013747.1|3326838_3327789_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814459.1|3327789_3328359_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929980.1|3328426_3329242_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929979.1|3329408_3331028_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929978.1|3331106_3332048_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929977.1|3332047_3332932_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010927038.1|3332935_3334588_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929976.1|3334627_3336025_+	amidase family protein	NA	NA	NA	NA	NA
WP_019247242.1|3336066_3337446_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_003814443.1|3337485_3337704_-	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_003814441.1|3338044_3338917_+	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_005012067.1|3339076_3340027_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814437.1|3340758_3341136_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_003814436.1|3341120_3341822_-	membrane protein	NA	NA	NA	NA	NA
WP_010931409.1|3341965_3342658_-	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_010931410.1|3342657_3343761_-	phosphotransferase	NA	NA	NA	NA	NA
WP_010931411.1|3343870_3346243_+	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931412.1|3346239_3347799_+	chaperone SurA	NA	NA	NA	NA	NA
WP_010931413.1|3347823_3348621_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931414.1|3348652_3349798_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_003814419.1|3349902_3351345_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_010929184.1|3351347_3352577_-	spore maturation protein	NA	NA	NA	NA	NA
WP_005012808.1|3354714_3355665_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3364957	3397640	4105954	tail,tRNA,terminase,transposase	uncultured_Caudovirales_phage(21.05%)	41	NA	NA
WP_003814636.1|3364957_3366688_-|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_003814635.1|3366753_3367326_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_010931420.1|3367306_3367993_+	response regulator	NA	NA	NA	NA	NA
WP_010931421.1|3368348_3369020_+	SOS response-associated peptidase	NA	Q5QF62	Pseudomonas_virus	39.9	4.7e-36
WP_010931422.1|3369348_3369570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010926433.1|3369569_3369851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931423.1|3369847_3370363_-	DUF2514 family protein	NA	NA	NA	NA	NA
WP_010931424.1|3370362_3370914_-	lysozyme	NA	NA	NA	NA	NA
WP_010931425.1|3370892_3371135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931426.1|3371139_3371952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926428.1|3371951_3372215_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124740660.1|3372255_3372453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931428.1|3372433_3372850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931429.1|3372854_3376811_-	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
WP_010931430.1|3376803_3377193_-	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931431.1|3377189_3377723_-	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931432.1|3377790_3378150_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931433.1|3378159_3380772_-|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931434.1|3380797_3381088_-	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_003813412.1|3381105_3381435_-|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931435.1|3381444_3381963_-|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_010931436.1|3382217_3382718_-	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931437.1|3382725_3383148_-	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931438.1|3383144_3383543_-	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931439.1|3383539_3383935_-	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931440.1|3383934_3384135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|3384136_3384619_-	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931442.1|3384681_3384933_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|3385607_3386558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931443.1|3386986_3387589_-	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_010931444.1|3387711_3387954_-	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931445.1|3387959_3389015_-	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931446.1|3389043_3390462_-	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931447.1|3390464_3391742_-|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_019247942.1|3391728_3392214_-|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_005012067.1|3392853_3393804_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633094.1|3394060_3394750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853179.1|3394742_3394994_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931451.1|3395548_3396160_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_019247378.1|3396231_3396438_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|3396689_3397640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 29
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3408859	3455178	4105954	tRNA,transposase,protease	Bacillus_phage(40.0%)	44	NA	NA
WP_010930800.1|3408859_3409810_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931467.1|3409886_3411707_+	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010931466.1|3411711_3412785_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_003814230.1|3412907_3413876_+	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010927008.1|3413949_3414861_+	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814226.1|3414879_3415452_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010931465.1|3415532_3416081_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_010931464.1|3416080_3417670_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_003814221.1|3417739_3417979_-	DNA-binding protein	NA	NA	NA	NA	NA
WP_023995141.1|3418019_3419045_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814217.1|3419110_3420292_-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase	NA	NA	NA	NA	NA
WP_010931463.1|3420388_3420841_+	membrane protein	NA	NA	NA	NA	NA
WP_010931462.1|3420850_3422191_-	aminopeptidase P N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931461.1|3422507_3423545_+	sodium:calcium antiporter	NA	NA	NA	NA	NA
WP_003814209.1|3423926_3424286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041166340.1|3424369_3425311_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879617.1|3425385_3426336_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814206.1|3426629_3427724_+	porin	NA	NA	NA	NA	NA
WP_003814205.1|3427805_3428687_+	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814203.1|3428708_3429548_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_010931459.1|3429623_3431141_+|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_010931458.1|3431237_3432338_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931457.1|3432354_3432777_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_003814195.1|3432799_3433012_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931456.1|3433058_3433979_-	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_010931455.1|3434161_3434911_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003814188.1|3434913_3435243_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931454.1|3435449_3436883_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814185.1|3436894_3437278_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931453.1|3437339_3438140_+	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_005015810.1|3438238_3439189_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931477.1|3439244_3440057_+	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_003814178.1|3440215_3441064_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931478.1|3441264_3445659_+	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_010931479.1|3445752_3446730_-	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_003814172.1|3447116_3447695_+	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931480.1|3447842_3448892_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814165.1|3448932_3449667_-	arginyltransferase	NA	NA	NA	NA	NA
WP_010931481.1|3450461_3451043_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814158.1|3451039_3451933_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003820995.1|3452066_3452468_+	DoxX family protein	NA	NA	NA	NA	NA
WP_010927005.1|3452485_3453088_-	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003814152.1|3453145_3453529_-	membrane protein	NA	NA	NA	NA	NA
WP_005012067.1|3454227_3455178_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3599858	3654832	4105954	transposase	Lake_Baikal_phage(20.0%)	44	NA	NA
WP_005012067.1|3599858_3600809_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929827.1|3600925_3601993_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_019247670.1|3602068_3605197_-	Rne/Rng family ribonuclease	NA	NA	NA	NA	NA
WP_023853155.1|3605704_3606670_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_010929830.1|3606672_3607344_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_010929831.1|3607500_3608460_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA	NA
WP_003821340.1|3608467_3609130_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA	NA
WP_005013747.1|3609126_3610077_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929806.1|3610198_3611452_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929805.1|3611429_3612392_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929804.1|3612523_3613018_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_010929803.1|3613017_3614250_+	CoA transferase	NA	NA	NA	NA	NA
WP_019247316.1|3614995_3615277_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929802.1|3615263_3616250_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929801.1|3616393_3616798_+	RidA family protein	NA	NA	NA	NA	NA
WP_010929800.1|3616939_3620326_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929799.1|3620356_3621820_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_019248869.1|3621840_3623457_+	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010929797.1|3623542_3624202_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929796.1|3624231_3624672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929795.1|3625182_3625386_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	58.2	5.8e-14
WP_010929794.1|3625561_3626467_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929577.1|3626565_3627516_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3627614_3628565_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814674.1|3630346_3631540_-	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_010929793.1|3631605_3632634_-	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_019247419.1|3632660_3633833_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003814681.1|3633958_3634936_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814685.1|3634946_3635918_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929791.1|3635984_3636770_-	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814691.1|3636762_3637995_-	CoA transferase	NA	NA	NA	NA	NA
WP_003814694.1|3638190_3638946_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_010929789.1|3639056_3639575_+	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_010929788.1|3641363_3642764_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_003820700.1|3642863_3643208_+	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_003814701.1|3643296_3643767_+	universal stress protein	NA	NA	NA	NA	NA
WP_019247421.1|3644177_3644576_+	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_010929577.1|3644707_3645658_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814730.1|3648102_3648837_+	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_003814728.1|3649246_3649426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814726.1|3649616_3650930_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929786.1|3650945_3652457_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_010929785.1|3652453_3653659_-	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_022997984.1|3653854_3654832_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3744645	3798840	4105954	transposase,protease	Paramecium_bursaria_Chlorella_virus(14.29%)	53	NA	NA
WP_005013747.1|3744645_3745596_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814960.1|3745718_3746447_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_010929739.1|3746543_3747722_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_010929738.1|3747718_3748552_+	symmetrical bis(5'-nucleosyl)-tetraphosphatase	NA	NA	NA	NA	NA
WP_010929737.1|3748588_3749329_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929736.1|3749448_3750624_-	dihydroorotase	NA	NA	NA	NA	NA
WP_003820560.1|3750620_3751574_-	aspartate carbamoyltransferase catalytic subunit	NA	A7RB08	Paramecium_bursaria_Chlorella_virus	35.8	2.5e-30
WP_010929735.1|3751587_3751989_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_010927118.1|3751981_3752587_-	YqgE/AlgH family protein	NA	NA	NA	NA	NA
WP_003814980.1|3752674_3752839_-	rubredoxin	NA	NA	NA	NA	NA
WP_010929734.1|3752955_3753804_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_003814984.1|3753800_3754454_+	thiamine phosphate synthase	NA	NA	NA	NA	NA
WP_010929733.1|3754470_3755754_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_010929732.1|3755993_3757619_+	DUF342 domain-containing protein	NA	NA	NA	NA	NA
WP_003814990.1|3757712_3758114_-	RidA family protein	NA	NA	NA	NA	NA
WP_003814993.1|3758138_3758573_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814996.1|3758574_3760224_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	31.2	2.6e-56
WP_010929731.1|3760264_3761434_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929730.1|3761436_3762300_-	enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010929729.1|3765663_3766368_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.2	1.1e-16
WP_003815010.1|3766361_3767156_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	23.5	2.6e-09
WP_003815011.1|3767152_3768118_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815013.1|3768121_3769042_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815015.1|3769138_3770302_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929728.1|3770524_3771415_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003815019.1|3771418_3771922_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929727.1|3771964_3772963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930048.1|3772959_3773910_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_111735998.1|3773998_3774286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|3774477_3775428_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566083.1|3775487_3776048_+	5'-3'-deoxyribonucleotidase	NA	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	30.8	3.2e-14
WP_004566082.1|3777550_3778432_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929725.1|3778545_3779748_+	MFS transporter	NA	NA	NA	NA	NA
WP_003819105.1|3779876_3781736_-	dihydroxy-acid dehydratase	NA	NA	NA	NA	NA
WP_003819104.1|3781813_3782623_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929724.1|3782693_3783695_+	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_003807710.1|3783726_3784587_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010929723.1|3784786_3785791_+	alpha/beta hydrolase	NA	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	31.5	7.5e-30
WP_003819100.1|3785787_3787374_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003807706.1|3787382_3788309_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA	NA
WP_003807705.1|3788331_3788958_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_005015810.1|3789056_3790007_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014906092.1|3790003_3791140_-	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_010927226.1|3791193_3791970_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_010929721.1|3791994_3792453_-	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_003815815.1|3792592_3793234_+	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_003815816.1|3793298_3794681_+	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_019247426.1|3794700_3795555_+	cytochrome c1	NA	NA	NA	NA	NA
WP_003815819.1|3795713_3796325_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815821.1|3796334_3796784_+|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_010929719.1|3797302_3797443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|3797450_3797612_-	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|3797889_3798840_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	3809456	3870345	4105954	tRNA,transposase,protease	uncultured_Caudovirales_phage(33.33%)	51	NA	NA
WP_010929591.1|3809456_3810407_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929711.1|3811137_3812118_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929710.1|3812131_3813256_+	CoA transferase	NA	NA	NA	NA	NA
WP_003814321.1|3813263_3815018_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929709.1|3815124_3816024_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814324.1|3816088_3817072_-	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929708.1|3817207_3818188_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929707.1|3818204_3819596_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929706.1|3819747_3820284_+|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_019247543.1|3820214_3821600_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_003814332.1|3821742_3822381_-	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_010929705.1|3822467_3824357_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814337.1|3824353_3825295_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003814339.1|3825400_3826450_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_010929704.1|3826702_3827404_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_010929703.1|3827400_3828099_+	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929702.1|3828099_3829455_+	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929701.1|3829451_3829943_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_003814351.1|3829961_3830918_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814355.1|3832328_3834431_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814356.1|3834601_3835645_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814358.1|3835688_3836432_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814363.1|3837453_3837864_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_010929700.1|3838813_3839611_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930742.1|3839709_3840660_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|3840656_3841607_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|3841693_3842644_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929681.1|3842758_3843760_-	HindIII family type II restriction endonuclease	NA	NA	NA	NA	NA
WP_010929682.1|3843850_3844417_-	preprotein translocase subunit SecD	NA	NA	NA	NA	NA
WP_010929683.1|3844735_3846649_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA	NA
WP_010929684.1|3846690_3848121_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_019247308.1|3848233_3849646_-	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003818947.1|3849662_3850358_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|3850576_3851527_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929687.1|3851551_3852451_-	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_010929688.1|3852605_3853154_+	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929689.1|3853192_3853912_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929690.1|3853983_3856926_+	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_033455792.1|3857519_3860315_+|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929692.1|3860772_3861705_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929693.1|3861816_3863166_+	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929694.1|3863197_3863923_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929695.1|3863973_3864825_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929696.1|3864954_3865641_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_003819086.1|3865640_3866285_+	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_003807674.1|3866341_3866617_+	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003807672.1|3866642_3866939_+	YciI family protein	NA	NA	NA	NA	NA
WP_010929697.1|3866984_3867764_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_023853200.1|3867769_3868810_+	cyclase family protein	NA	NA	NA	NA	NA
WP_010929699.1|3868914_3869238_-	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_010931070.1|3869394_3870345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 33
NZ_CP011200	Bordetella pertussis strain I373 chromosome, complete genome	4105954	4028125	4081557	4105954	transposase	Planktothrix_phage(40.0%)	45	NA	NA
WP_010931661.1|4028125_4029076_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931662.1|4029245_4030472_+	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA	NA
WP_010931663.1|4030671_4031538_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003815027.1|4031530_4032493_+	Nudix family hydrolase	NA	A0A221LFJ1	Barns_Ness_breadcrumb_sponge_sobemo-like_virus	53.4	1.9e-06
WP_010927663.1|4032593_4033544_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|4033642_4034593_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|4034691_4035642_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994937.1|4035638_4037132_-	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_003815032.1|4037128_4040236_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931665.1|4040232_4043301_-	MdtB/MuxB family multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_010931666.1|4043297_4044548_-	MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_003815038.1|4044728_4045490_-	cell division protein ZapD	NA	NA	NA	NA	NA
WP_019247320.1|4045522_4046173_-	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003820519.1|4046175_4047015_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_003815047.1|4047255_4047999_+	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003815049.1|4048081_4048429_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003815051.1|4048526_4049369_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_003815053.1|4049413_4050301_-	segregation/condensation protein A	NA	NA	NA	NA	NA
WP_003815055.1|4050327_4050516_-	DUF3460 family protein	NA	NA	NA	NA	NA
WP_010931669.1|4050613_4052071_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_010931670.1|4052057_4053584_+	glycerol kinase GlpK	NA	NA	NA	NA	NA
WP_003815061.1|4053602_4054070_-	CopD family protein	NA	NA	NA	NA	NA
WP_010931671.1|4054069_4055092_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_169507388.1|4055212_4055932_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.9	4.7e-34
WP_003815066.1|4056007_4057108_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815068.1|4057109_4058300_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003815070.1|4058419_4059436_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	42.1	1.0e-71
WP_003815073.1|4059754_4060426_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	38.2	9.5e-29
WP_010927126.1|4060422_4061331_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_010931672.1|4061542_4062190_+	chemoreceptor glutamine deamidase CheD	NA	NA	NA	NA	NA
WP_010931673.1|4066041_4067118_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_003815084.1|4067128_4067938_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815086.1|4068027_4068801_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010930363.1|4068983_4069934_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_077274100.1|4069822_4070845_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931674.1|4070834_4071989_+	CoA transferase	NA	NA	NA	NA	NA
WP_010931675.1|4072028_4073441_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247370.1|4073565_4074432_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931677.1|4074433_4075258_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023853488.1|4075254_4076016_+	nitroreductase	NA	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	31.0	2.0e-19
WP_003808010.1|4076096_4076783_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931679.1|4076956_4077964_+	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA	NA
WP_003819309.1|4077960_4078740_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931680.1|4078797_4080060_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929591.1|4080606_4081557_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
