The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	27282	70036	4106384	tRNA,transposase	Synechococcus_phage(50.0%)	41	NA	NA
WP_010929577.1|27282_28233_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023995007.1|28314_28650_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929578.1|28674_29109_-	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_019247164.1|29141_30359_-	thiolase family protein	NA	NA	NA	NA	NA
WP_010929580.1|30364_30862_-	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_019247165.1|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929582.1|32214_33006_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929583.1|33048_34470_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010929584.1|34625_35576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814398.1|35572_36763_-	MFS transporter	NA	NA	NA	NA	NA
WP_010929585.1|37012_37924_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_010929586.1|37925_40064_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003814404.1|40060_40600_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA	NA
WP_003814405.1|40603_41332_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_010929587.1|41318_42212_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_019247766.1|42282_42678_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003814412.1|42687_43218_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	35.4	3.7e-12
WP_010929588.1|43663_44614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929589.1|45200_45749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815265.1|45720_45957_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003815255.1|46084_46978_+	AEC family transporter	NA	NA	NA	NA	NA
WP_010929590.1|48147_49395_+	homoserine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003817748.1|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA	NA
WP_010929591.1|50141_51092_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443813.1|51134_52391_+	muropeptide transporter	NA	NA	NA	NA	NA
WP_010929592.1|53622_54357_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_019247224.1|54362_54953_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	3.2e-20
WP_003817737.1|54977_55667_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_023852650.1|55663_56425_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010929594.1|56504_57404_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_005012808.1|57497_58448_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929595.1|59248_60475_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_047122776.1|60474_60888_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010929597.1|61077_62019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248755.1|62442_63417_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929599.1|63473_64055_-	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010929600.1|64067_64370_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_029443770.1|64488_65547_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_019247832.1|65581_66853_-	TRAP transporter large permease	NA	NA	NA	NA	NA
WP_010929603.1|67482_68664_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929584.1|69085_70036_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 2
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	77634	136108	4106384	tRNA,transposase	Planktothrix_phage(22.22%)	54	NA	NA
WP_005012067.1|77634_78585_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166334.1|78659_79604_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929608.1|79600_81475_-	O-antigen biosynthesis protein WlbL	NA	A0A2P1ELS8	Moumouvirus	26.9	2.0e-23
WP_003807102.1|82822_83527_-	O-antigen biosynthesis protein WlbI	NA	NA	NA	NA	NA
WP_010929609.1|83523_84696_-	O-antigen biosynthesis protein WlbH	NA	NA	NA	NA	NA
WP_010929610.1|84891_85485_-	O-antigen biosynthesis protein WlbG	NA	NA	NA	NA	NA
WP_010929611.1|85481_86714_-	O-antigen biosynthesis protein WlbF	NA	NA	NA	NA	NA
WP_077071156.1|86731_87991_-	O-antigen biosynthesis protein WlbE	NA	NA	NA	NA	NA
WP_010929613.1|88014_89103_-	O-antigen biosynthesis protein WlbD	NA	A0A0N9R0B2	Chrysochromulina_ericina_virus	36.3	4.8e-46
WP_010929614.1|89110_90211_-	O-antigen biosynthesis protein WlbC	NA	A0A2K9L0G1	Tupanvirus	29.7	3.3e-31
WP_003807114.1|90214_90790_-	O-antigen biosynthesis protein WlbB	NA	NA	NA	NA	NA
WP_003807115.1|90793_91846_-	O-antigen biosynthesis protein WlbA	NA	NA	NA	NA	NA
WP_010929615.1|91976_92984_+	lipopolysaccharide heptosyltransferase I	NA	NA	NA	NA	NA
WP_010929616.1|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA	NA
WP_003807124.1|94288_94444_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929617.1|94468_95272_-	type III pantothenate kinase	NA	NA	NA	NA	NA
WP_010929618.1|95268_96135_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_010929619.1|96209_97340_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003807131.1|97339_98179_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	32.4	9.1e-21
WP_010929620.1|99111_99714_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_010929621.1|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003807138.1|100529_101786_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	40.5	6.2e-66
WP_010929622.1|101833_102733_+	D-amino acid aminotransferase	NA	NA	NA	NA	NA
WP_003818417.1|102808_103084_+	YbeD family protein	NA	NA	NA	NA	NA
WP_010929623.1|103091_103754_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA	NA
WP_003807146.1|103815_104817_+	lipoyl synthase	NA	NA	NA	NA	NA
WP_003807148.1|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	53.4	3.7e-47
WP_010929624.1|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_010929625.1|106330_107392_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	44.8	1.6e-78
WP_010929626.1|107427_108378_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929627.1|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_010929628.1|110552_111182_-	thiol:disulfide interchange protein DsbA/DsbL	NA	NA	NA	NA	NA
WP_010927242.1|111243_111927_-	SPOR domain-containing protein	NA	NA	NA	NA	NA
WP_023853376.1|111936_113619_-|tRNA	arginine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003815933.1|113906_114254_+	DUF1840 domain-containing protein	NA	NA	NA	NA	NA
WP_003815930.1|114344_114662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931363.1|114944_115961_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003815929.1|116036_116837_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003815927.1|116833_117709_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_010929633.1|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929634.1|119054_120095_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	6.0e-22
WP_010929635.1|120200_121022_-	phosphodiesterase	NA	NA	NA	NA	NA
WP_005012067.1|121122_122073_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014905488.1|122171_123077_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.7	9.8e-21
WP_003815918.1|123073_123907_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010929637.1|124743_125754_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_019247800.1|125750_126140_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010929638.1|127033_128287_+	amidase	NA	NA	NA	NA	NA
WP_010929639.1|128377_130078_-	2-isopropylmalate synthase	NA	NA	NA	NA	NA
WP_010929640.1|130504_131152_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023853393.1|131150_132590_+	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_003815905.1|132682_132985_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA	NA
WP_010929512.1|133012_133891_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|135157_136108_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	164892	225403	4106384	tRNA,transposase,protease	Diachasmimorpha_longicaudata_entomopoxvirus(11.11%)	51	NA	NA
WP_005015810.1|164892_165843_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929659.1|167286_168189_-	YgcG family protein	NA	NA	NA	NA	NA
WP_003815889.1|168166_168796_-	LemA family protein	NA	NA	NA	NA	NA
WP_010929660.1|169078_170509_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	29.8	5.8e-44
WP_010929661.1|170542_171172_+	LysE family transporter	NA	NA	NA	NA	NA
WP_003815895.1|171220_172828_+	peptide chain release factor 3	NA	A0A2K9L6L3	Tupanvirus	37.8	9.3e-14
WP_010929663.1|172852_173536_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815898.1|173617_174094_-	bacterioferritin	NA	NA	NA	NA	NA
WP_010929591.1|174300_175251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929664.1|176366_176894_+	META domain-containing protein	NA	NA	NA	NA	NA
WP_010929665.1|176985_177801_+	META and DUF4377 domain-containing protein	NA	NA	NA	NA	NA
WP_003808370.1|177861_178596_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_010929666.1|178633_180712_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	23.6	1.5e-27
WP_003808374.1|180961_181234_-	hypothetical protein	NA	NA	NA	NA	NA
WP_033446322.1|181335_182421_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010929668.1|182424_184329_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA	NA
WP_014486044.1|184325_188000_+	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA	NA
WP_010929670.1|188060_188624_+	dCTP deaminase	NA	S5VM63	Pseudomonas_phage	75.3	2.6e-72
WP_003808385.1|188631_189054_-	VOC family protein	NA	NA	NA	NA	NA
WP_010929671.1|189081_189501_-	VOC family protein	NA	NA	NA	NA	NA
WP_076879599.1|189529_190003_-	GNAT family N-acetyltransferase	NA	Q9AZG4	Lactococcus_phage	31.1	2.2e-11
WP_003808391.1|190102_190600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003808393.1|190754_193025_+	arginine/lysine/ornithine decarboxylase	NA	NA	NA	NA	NA
WP_010929672.1|193073_194306_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010929591.1|194404_195355_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929673.1|195457_196093_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	73.8	2.8e-83
WP_019248671.1|196089_196983_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_010929675.1|197377_198478_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_010929676.1|198559_198934_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_010929677.1|198993_201858_+	aminomethyl-transferring glycine dehydrogenase	NA	E3SN07	Prochlorococcus_phage	51.4	1.2e-261
WP_010929678.1|202002_202743_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929679.1|202812_204024_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929680.1|204052_205021_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931070.1|205634_206585_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929699.1|206741_207065_+	phosphate starvation-inducible protein	NA	NA	NA	NA	NA
WP_023853200.1|207169_208210_-	cyclase family protein	NA	NA	NA	NA	NA
WP_010929697.1|208215_208995_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA	NA
WP_003807672.1|209040_209337_-	YciI family protein	NA	NA	NA	NA	NA
WP_003807674.1|209362_209638_-	muconolactone Delta-isomerase	NA	NA	NA	NA	NA
WP_003819086.1|209694_210339_-	CoA transferase subunit B	NA	NA	NA	NA	NA
WP_010929696.1|210338_211025_-	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA	NA
WP_010929695.1|211154_212006_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929694.1|212056_212782_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010929693.1|212813_214163_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_010929692.1|214274_215207_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_033455792.1|215664_218460_-|protease	serine protease autotransporter SphB1	protease	NA	NA	NA	NA
WP_010929690.1|219053_221996_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA	NA
WP_010929689.1|222067_222787_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A0A0RPC6	Escherichia_phage	43.9	8.0e-50
WP_010929688.1|222825_223374_-	N-acetyltransferase	NA	A0A2H4J136	uncultured_Caudovirales_phage	41.7	1.2e-21
WP_010929687.1|223528_224428_+	virginiamycin B lyase	NA	NA	NA	NA	NA
WP_005012808.1|224452_225403_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	233335	286923	4106384	tRNA,transposase,protease	Bacillus_phage(25.0%)	48	NA	NA
WP_005012067.1|233335_234286_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|234372_235323_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930742.1|235319_236270_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929700.1|236368_237166_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003814363.1|238115_238526_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_003814358.1|239547_240291_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814356.1|240334_241378_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814355.1|241548_243651_+	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_003814351.1|245061_246018_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929701.1|246036_246528_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_010929702.1|246524_247880_-	polynucleotide adenylyltransferase PcnB	NA	A0A1B1IVF3	uncultured_Mediterranean_phage	36.8	3.4e-25
WP_010929703.1|247880_248579_-	HAD-IB family hydrolase	NA	NA	NA	NA	NA
WP_010929704.1|248575_249277_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA	NA
WP_003814339.1|249529_250579_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.6	5.6e-68
WP_003814337.1|250684_251626_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_010929705.1|251622_253512_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	32.8	3.3e-79
WP_003814332.1|253598_254237_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_019247543.1|254379_255765_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A2H4JCM7	uncultured_Caudovirales_phage	30.3	4.5e-17
WP_010929706.1|255695_256232_-|tRNA	bifunctional alanine racemase/tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_010929707.1|256383_257775_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_010929708.1|257791_258772_-	AEC family transporter	NA	NA	NA	NA	NA
WP_003814324.1|258907_259891_+	tripartite tricarboxylate transporter substrate binding protein BugE	NA	NA	NA	NA	NA
WP_010929709.1|259955_260855_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814321.1|260961_262716_+	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_010929710.1|262723_263848_-	CoA transferase	NA	NA	NA	NA	NA
WP_010929711.1|263861_264842_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012067.1|265572_266523_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929712.1|267082_267628_+	GbsR/MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929713.1|267711_269331_+	cytochrome d ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_004567834.1|269346_270501_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_003817696.1|270514_270640_+	cytochrome bd-I oxidase subunit CydX	NA	NA	NA	NA	NA
WP_010929714.1|270636_272388_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	23.8	3.4e-09
WP_010929715.1|272384_274064_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	27.6	3.6e-16
WP_010929716.1|274126_274675_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.1	1.3e-28
WP_010929717.1|275817_276096_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|277139_278090_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_173651708.1|278107_278254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929718.1|278367_278529_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_010929719.1|278536_278677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003815821.1|279195_279645_-|protease	ClpXP protease specificity-enhancing factor	protease	NA	NA	NA	NA
WP_003815819.1|279654_280266_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_019247426.1|280424_281279_-	cytochrome c1	NA	NA	NA	NA	NA
WP_003815816.1|281298_282681_-	cytochrome bc complex cytochrome b subunit	NA	NA	NA	NA	NA
WP_003815815.1|282745_283387_-	ubiquinol-cytochrome c reductase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_010929721.1|283526_283985_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA	NA
WP_010927226.1|284009_284786_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_014906092.1|284839_285976_+	trypsin-like peptidase domain-containing protein	NA	W5SAB9	Pithovirus	31.2	1.2e-07
WP_005015810.1|285972_286923_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	390856	448365	4106384	transposase	Orpheovirus(14.29%)	50	NA	NA
WP_005012067.1|390856_391807_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927231.1|391943_392861_+	reductase	NA	NA	NA	NA	NA
WP_003815842.1|392857_393106_+	glutaredoxin family protein	NA	NA	NA	NA	NA
WP_003815840.1|393102_394308_+	CoA transferase	NA	NA	NA	NA	NA
WP_014486045.1|394380_395376_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486046.1|395398_396619_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486047.1|396615_397260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248476.1|398990_399800_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486048.1|400104_401058_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	42.5	5.6e-59
WP_014486049.1|401156_402140_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486050.1|402066_402768_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_014486051.1|402816_403587_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_019247259.1|403583_404762_-	CoA transferase	NA	NA	NA	NA	NA
WP_014486052.1|404929_406636_-	thiamine pyrophosphate-requiring protein	NA	NA	NA	NA	NA
WP_014486053.1|406632_407529_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014486054.1|407569_409159_-	rhodanese homology domain-containing protein	NA	NA	NA	NA	NA
WP_003807867.1|409208_410201_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003807865.1|410269_410869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014486055.1|411329_412310_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010929577.1|412385_413336_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_047122777.1|413424_414339_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929782.1|414335_414995_+	LysE family translocator	NA	NA	NA	NA	NA
WP_003814709.1|415084_416008_+	alpha/beta fold hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	27.2	4.8e-07
WP_010929783.1|416013_416469_-	multidrug/biocide efflux PACE transporter	NA	NA	NA	NA	NA
WP_010929784.1|416465_417569_-	ChbG/HpnK family deacetylase	NA	NA	NA	NA	NA
WP_157734656.1|417527_417797_+	GtrA family protein	NA	NA	NA	NA	NA
WP_010927086.1|417756_419376_-	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003814720.1|419372_420431_-	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	40.5	2.8e-59
WP_033446199.1|420560_421055_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_022997984.1|421147_422125_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929785.1|422320_423526_+	sodium/glutamate symporter	NA	NA	NA	NA	NA
WP_010929786.1|423522_425034_+	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA	NA
WP_003814726.1|425049_426363_-	short-chain fatty acid transporter	NA	NA	NA	NA	NA
WP_003814728.1|426553_426733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814730.1|427142_427877_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	43.8	1.4e-41
WP_010929577.1|430321_431272_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247421.1|431403_431802_-	GTP-binding protein	NA	E4ZFJ7	Streptococcus_phage	44.3	9.0e-19
WP_003814701.1|432212_432683_-	universal stress protein	NA	NA	NA	NA	NA
WP_003820700.1|432771_433116_-	TIGR01244 family phosphatase	NA	NA	NA	NA	NA
WP_010929788.1|433215_434616_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010929789.1|436404_436923_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	38.9	2.1e-12
WP_003814694.1|437033_437789_+	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	40.8	2.9e-42
WP_003814691.1|437984_439217_+	CoA transferase	NA	NA	NA	NA	NA
WP_010929791.1|439209_439995_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_003814685.1|440061_441033_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003814681.1|441043_442021_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247419.1|442146_443319_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929793.1|443345_444374_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_003814674.1|444439_445633_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA	NA
WP_005012067.1|447414_448365_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 6
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	589370	650560	4106384	transposase,protease	uncultured_Mediterranean_phage(40.0%)	56	NA	NA
WP_005013747.1|589370_590321_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023998122.1|590817_591687_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_010931496.1|591683_592505_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_019247235.1|592703_593195_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_019247236.1|593213_594287_+	CHAD domain-containing protein	NA	NA	NA	NA	NA
WP_023853086.1|594333_595437_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_003808577.1|595512_596133_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_003808574.1|596153_596663_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	42.1	1.2e-28
WP_003808570.1|596717_596969_+	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	53.4	1.6e-18
WP_010931494.1|597032_598166_+	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA	NA
WP_003808567.1|598173_598560_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_010931493.1|598556_601076_-	AsmA family protein	NA	NA	NA	NA	NA
WP_003808563.1|601504_601843_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003808562.1|601839_602346_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_010931492.1|602407_603208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931491.1|603318_604260_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931490.1|604353_605889_-	M81 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931489.1|607568_609419_-	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	1.6e-17
WP_003808549.1|609422_610256_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931488.1|610255_611197_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931487.1|611448_612420_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931486.1|612561_614850_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003808542.1|615156_616065_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010931485.1|616119_617085_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_062810229.1|617159_618821_+	thiamine pyrophosphate-binding protein	NA	NA	NA	NA	NA
WP_010931483.1|618892_619603_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_154698388.1|619569_619734_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|619751_620702_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814152.1|621400_621784_+	membrane protein	NA	NA	NA	NA	NA
WP_010927005.1|621841_622444_+	DUF2946 family protein	NA	NA	NA	NA	NA
WP_003820995.1|622461_622863_-	DoxX family protein	NA	NA	NA	NA	NA
WP_003814158.1|622996_623890_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931481.1|623886_624468_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003814165.1|625262_625997_+	arginyltransferase	NA	NA	NA	NA	NA
WP_010931480.1|626037_627087_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_003814172.1|627234_627813_-	TIGR01841 family phasin	NA	NA	NA	NA	NA
WP_010931479.1|628199_629177_+	tripartite tricarboxylate transporter substrate binding protein BugD	NA	NA	NA	NA	NA
WP_010931478.1|629270_633665_-	dermonecrotic toxin	NA	NA	NA	NA	NA
WP_003814178.1|633865_634714_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931477.1|634872_635685_-	competence/damage-inducible protein A	NA	NA	NA	NA	NA
WP_005015810.1|635740_636691_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931453.1|636789_637590_-	EI24 domain-containing protein	NA	NA	NA	NA	NA
WP_003814185.1|637651_638035_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010931454.1|638046_639480_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.4	1.5e-52
WP_003814188.1|639686_640016_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_010931455.1|640018_640768_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010931456.1|640950_641871_+	branched-chain amino acid transaminase	NA	NA	NA	NA	NA
WP_003814195.1|641917_642130_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_010931457.1|642152_642575_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_010931458.1|642591_643692_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_010931459.1|643788_645306_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_003814203.1|645381_646221_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	48.9	1.1e-66
WP_003814205.1|646242_647124_-	cytochrome c oxidase assembly protein	NA	NA	NA	NA	NA
WP_003814206.1|647205_648300_-	porin	NA	NA	NA	NA	NA
WP_076879617.1|648593_649544_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_041166340.1|649618_650560_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	655884	702075	4106384	tRNA,transposase,terminase,tail	uncultured_Caudovirales_phage(18.18%)	51	NA	NA
WP_023995141.1|655884_656910_+|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_003814221.1|656950_657190_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_010931464.1|657259_658849_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	8.7e-65
WP_010931465.1|658848_659397_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA	NA
WP_003814226.1|659477_660050_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_010927008.1|660068_660980_-	complex I NDUFA9 subunit family protein	NA	NA	NA	NA	NA
WP_003814230.1|661053_662022_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_010931466.1|662144_663218_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.7	2.3e-08
WP_010931467.1|663222_665043_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.3	3.1e-74
WP_010930800.1|665119_666070_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446132.1|666158_666494_+	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003819076.1|666627_667278_+	carbonic anhydrase	NA	NA	NA	NA	NA
WP_010931468.1|667299_668718_-	amidase	NA	NA	NA	NA	NA
WP_019248554.1|668787_669543_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019247734.1|669511_670270_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931471.1|670280_671162_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931472.1|671178_671886_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.4	8.2e-07
WP_010931473.1|671888_672647_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.4	4.4e-14
WP_010931474.1|672856_674599_+	nitrite/sulfite reductase	NA	NA	NA	NA	NA
WP_010925795.1|674591_675116_+	DUF934 domain-containing protein	NA	NA	NA	NA	NA
WP_010931475.1|675155_675950_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_019248926.1|676117_677191_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|677289_678240_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247378.1|678491_678698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010931451.1|678769_679381_-	S24 family peptidase	NA	NA	NA	NA	NA
WP_023853179.1|679935_680187_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_161633094.1|680179_680869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853183.1|680886_681108_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|681125_682076_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247942.1|682715_683201_+|transposase	transposase	transposase	C7U0W1	Enterobacteria_phage	61.5	7.3e-39
WP_010931447.1|683187_684465_+|terminase	terminase large subunit	terminase	A0A1B1P9C9	Acinetobacter_phage	64.7	2.4e-150
WP_010931446.1|684467_685886_+	DUF4055 domain-containing protein	NA	R9TF43	Synechococcus_phage	42.1	2.2e-99
WP_010931445.1|685914_686970_+	hypothetical protein	NA	A0A0H5BBX3	Pseudomonas_phage	50.6	2.6e-97
WP_010931444.1|686975_687218_+	hypothetical protein	NA	A0A0H5AUE5	Pseudomonas_phage	53.2	5.6e-16
WP_010931443.1|687340_687943_+	hypothetical protein	NA	R9TF81	Synechococcus_phage	43.6	7.9e-27
WP_005012808.1|688371_689322_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931442.1|689996_690248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247789.1|690310_690793_+	hypothetical protein	NA	A0A2H4JE38	uncultured_Caudovirales_phage	37.1	1.8e-13
WP_010931440.1|690794_690995_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931439.1|690994_691390_+	hypothetical protein	NA	A0A2D2W284	Stenotrophomonas_phage	35.0	7.8e-07
WP_010931438.1|691386_691785_+	hypothetical protein	NA	I6PCW1	Cronobacter_phage	38.0	4.2e-16
WP_010931437.1|691781_692204_+	DUF4128 domain-containing protein	NA	NA	NA	NA	NA
WP_010931436.1|692211_692712_+	HNH endonuclease	NA	A0A1I9SEX5	Klebsiella_phage	45.1	4.4e-31
WP_010931435.1|692966_693485_+|tail	phage tail protein	tail	A0A1S5R1H0	Pseudomonas_phage	38.3	5.4e-24
WP_003813412.1|693494_693824_+|tail	phage tail assembly chaperone	tail	A0A2H4J121	uncultured_Caudovirales_phage	44.0	2.9e-15
WP_010931434.1|693841_694132_+	DUF1799 domain-containing protein	NA	A0A2H4JBP7	uncultured_Caudovirales_phage	45.2	3.7e-14
WP_010931433.1|694157_696770_+|tail	phage tail tape measure protein	tail	A0A2H4J107	uncultured_Caudovirales_phage	38.6	4.9e-105
WP_010931432.1|696779_697139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931431.1|697206_697740_+	DUF1833 family protein	NA	A5A3Q9	Burkholderia_phage	46.9	1.1e-40
WP_010931430.1|697736_698126_+	C40 family peptidase	NA	A0A0G3EYJ9	Achromobacter_phage	50.0	3.0e-35
WP_010931429.1|698118_702075_+	DUF1983 domain-containing protein	NA	A0A0B5A1N2	Achromobacter_phage	40.8	3.9e-215
>prophage 8
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	708241	762171	4106384	tRNA,transposase	Planktothrix_phage(50.0%)	46	NA	NA
WP_003814636.1|708241_709972_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.4	4.6e-11
WP_010931419.1|710024_710453_+	tol-pal system-associated acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003814641.1|710455_711136_+	protein TolQ	NA	NA	NA	NA	NA
WP_003814643.1|711135_711594_+	protein TolR	NA	NA	NA	NA	NA
WP_010931418.1|711630_712605_+	cell envelope integrity protein TolA	NA	NA	NA	NA	NA
WP_010931417.1|712621_713938_+	Tol-Pal system protein TolB	NA	NA	NA	NA	NA
WP_003814650.1|713969_714467_+	peptidoglycan-associated lipoprotein Pal	NA	NA	NA	NA	NA
WP_003814652.1|714553_715243_+	tol-pal system protein YbgF	NA	NA	NA	NA	NA
WP_010931416.1|715242_716292_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003814657.1|716288_717083_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.6	2.4e-15
WP_019247923.1|717251_717602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247922.1|717577_718135_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_005012808.1|719264_720215_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929184.1|722352_723582_+	spore maturation protein	NA	NA	NA	NA	NA
WP_003814419.1|723584_725027_-	pyruvate kinase	NA	NA	NA	NA	NA
WP_010931414.1|725131_726277_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	42.2	1.7e-41
WP_010931413.1|726308_727106_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_010931412.1|727130_728690_-	chaperone SurA	NA	NA	NA	NA	NA
WP_010931411.1|728686_731059_-	LPS-assembly protein LptD	NA	NA	NA	NA	NA
WP_010931410.1|731168_732272_+	phosphotransferase	NA	NA	NA	NA	NA
WP_010931409.1|732271_732964_+	nucleotidyltransferase family protein	NA	NA	NA	NA	NA
WP_003814436.1|733107_733809_+	membrane protein	NA	NA	NA	NA	NA
WP_003814437.1|733793_734171_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA	NA
WP_005012067.1|734902_735853_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814441.1|736012_736885_-	oxaloacetate decarboxylase	NA	NA	NA	NA	NA
WP_003814443.1|737225_737444_+	DUF1059 domain-containing protein	NA	NA	NA	NA	NA
WP_019247242.1|737483_738863_-	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_010929976.1|738904_740302_-	amidase family protein	NA	NA	NA	NA	NA
WP_010927038.1|740341_741994_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.8	6.0e-16
WP_010929977.1|741997_742882_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929978.1|742881_743823_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010929979.1|743901_745521_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929980.1|745687_746503_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003814459.1|746570_747140_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005013747.1|747140_748091_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814461.1|748745_749843_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
WP_003814462.1|749876_751142_+	saccharopine dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010929591.1|751299_752250_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929982.1|752493_753084_+	polyisoprenoid-binding protein	NA	NA	NA	NA	NA
WP_010929983.1|753099_755544_-	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_003814467.1|755663_756635_-	FecR family protein	NA	NA	NA	NA	NA
WP_023852739.1|756766_757291_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_005012067.1|757250_758201_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929984.1|758422_760618_-	DUF1156 domain-containing protein	NA	NA	NA	NA	NA
WP_010929985.1|760690_761119_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012808.1|761220_762171_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 9
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	853049	902313	4106384	holin,transposase	Vibrio_phage(33.33%)	40	NA	NA
WP_010929591.1|853049_854000_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247352.1|854017_854572_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813949.1|854573_855008_+	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003813951.1|855004_855439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003813952.1|855422_856226_-	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_003813954.1|856242_857058_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_019248500.1|857054_857870_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_010930033.1|858016_858718_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813960.1|858745_860704_-|holin	choline BCCT transporter BetT	holin	A0A2I7QNT1	Vibrio_phage	30.3	8.0e-28
WP_005013747.1|860786_861737_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930032.1|861957_862626_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_010930031.1|862749_863856_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930030.1|863868_866982_+	MexW/MexI family multidrug efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.5	4.5e-57
WP_010930029.1|866978_868472_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010926969.1|868486_869158_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_003813974.1|869201_869696_-	azurin	NA	NA	NA	NA	NA
WP_010930027.1|869836_870484_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023853163.1|870587_872636_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930025.1|872632_874645_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_010930024.1|874670_876005_+	FAD-binding oxidoreductase	NA	NA	NA	NA	NA
WP_003813981.1|876113_877106_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813982.1|877172_879257_-	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_010930023.1|879281_880253_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930022.1|880381_881413_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_077071157.1|881416_882568_-	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_076879542.1|882738_883662_+	transcriptional regulator LrhA	NA	NA	NA	NA	NA
WP_003813987.1|883739_884564_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_023994644.1|884760_885777_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003813988.1|885973_886957_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930019.1|888555_889944_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003813991.1|889974_890964_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813992.1|891074_892307_-	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003813993.1|892588_893389_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930018.1|893411_895643_-|holin	choline BCCT transporter BetT	holin	NA	NA	NA	NA
WP_010930017.1|896430_896877_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_003813996.1|896898_897645_-	triose-phosphate isomerase	NA	NA	NA	NA	NA
WP_003813997.1|897788_898766_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA	NA
WP_010930016.1|899399_900011_+	PIN domain-containing protein	NA	K4HZX4	Acidithiobacillus_phage	32.5	3.3e-12
WP_003813999.1|900004_901222_-	threonine ammonia-lyase	NA	NA	NA	NA	NA
WP_005013747.1|901362_902313_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	911925	976865	4106384	transposase	Bacillus_phage(18.18%)	58	NA	NA
WP_005012067.1|911925_912876_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930051.1|912872_914705_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.4	1.3e-27
WP_010930052.1|915103_915763_+	thiopurine S-methyltransferase	NA	NA	NA	NA	NA
WP_023852837.1|915856_916003_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809770.1|916111_916279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930054.1|916290_916971_-	DUF3313 domain-containing protein	NA	NA	NA	NA	NA
WP_010930055.1|917252_917969_+	flagellar brake protein	NA	NA	NA	NA	NA
WP_010930056.1|917983_919285_-	phospholipase A	NA	NA	NA	NA	NA
WP_029444137.1|921429_924318_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930057.1|924541_925894_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_004568140.1|925922_926444_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_003819989.1|926440_927895_+	carboxylase	NA	NA	NA	NA	NA
WP_023852826.1|927929_928178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247557.1|928283_929159_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010930060.1|929184_930240_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930061.1|930252_931044_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930062.1|931076_932447_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_005012067.1|933623_934574_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930064.1|934626_934848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810832.1|935007_935220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003810835.1|935339_936458_+	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_003810839.1|936963_937215_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930066.1|937327_938278_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810840.1|938274_938658_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_023852913.1|938712_940527_-	ABC transporter ATP-binding protein/permease	NA	W8CYL7	Bacillus_phage	27.9	5.7e-44
WP_010930068.1|940676_941504_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	47.4	1.7e-67
WP_010930069.1|941549_942530_+	aldo/keto reductase	NA	NA	NA	NA	NA
WP_003810850.1|942526_942739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003810851.1|942735_943917_-	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_019248496.1|944080_944815_+	metallophosphoesterase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	49.2	1.9e-62
WP_010930071.1|944816_947429_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003810859.1|947564_949478_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_010930072.1|950093_950504_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003810865.1|950601_951687_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_005012067.1|951785_952736_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930088.1|952732_953707_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003821497.1|953831_954743_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	27.6	4.4e-05
WP_004566317.1|955019_955412_-	type II toxin-antitoxin system HicB family antitoxin	NA	A0A0R6PJ17	Moraxella_phage	45.0	4.8e-25
WP_005012808.1|955541_956492_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930090.1|956521_956704_-	type II toxin-antitoxin system HicA family toxin	NA	A0A1L2JY37	Aeribacillus_phage	56.1	3.7e-12
WP_010930091.1|957476_958658_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930092.1|958873_959551_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_010930093.1|959547_960273_-	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA	NA
WP_010930094.1|960398_960980_-	OmpA family protein	NA	NA	NA	NA	NA
WP_010930095.1|961350_964032_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	33.5	3.2e-104
WP_010930096.1|964031_965165_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	44.0	6.4e-78
WP_010930097.1|965157_966243_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_010930098.1|966329_967229_+	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010930099.1|967225_968554_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_010930100.1|968568_969240_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_010930101.1|969427_971143_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_010930102.1|971144_971504_+	integration host factor subunit beta	NA	NA	NA	NA	NA
WP_010930103.1|971695_972010_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_010930104.1|972052_973273_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA	NA
WP_010930105.1|973269_974211_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	NA	A0A2H4N7X4	Lake_Baikal_phage	28.1	1.5e-16
WP_003821513.1|974207_975197_+	ADP-glyceromanno-heptose 6-epimerase	NA	E3SJ87	Synechococcus_phage	34.4	2.2e-26
WP_033446303.1|975231_975816_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|975914_976865_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 11
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	996265	1059416	4106384	transposase	Enterococcus_phage(16.67%)	54	NA	NA
WP_005012067.1|996265_997216_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930118.1|997320_998370_+	NADP(H)-dependent aldo-keto reductase	NA	NA	NA	NA	NA
WP_010929632.1|998507_999524_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010926548.1|1001032_1001605_-	chorismate lyase	NA	NA	NA	NA	NA
WP_010930119.1|1001664_1002396_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_029443805.1|1002447_1003365_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930121.1|1004172_1007352_+	efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_014486063.1|1007348_1008731_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_010930123.1|1008800_1009052_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_010930124.1|1009197_1009812_-	SCO family protein	NA	NA	NA	NA	NA
WP_019248379.1|1009998_1012113_-	M3 family metallopeptidase	NA	NA	NA	NA	NA
WP_003811948.1|1012188_1013040_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.8	2.1e-33
WP_010930126.1|1013036_1013663_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003817147.1|1013659_1015414_-	PAS domain S-box protein	NA	NA	NA	NA	NA
WP_010930127.1|1015706_1018412_+	pyruvate dehydrogenase (acetyl-transferring), homodimeric type	NA	NA	NA	NA	NA
WP_010930128.1|1018424_1020086_+	dihydrolipoyllysine-residue acetyltransferase	NA	NA	NA	NA	NA
WP_010930129.1|1020098_1021889_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	25.2	2.4e-39
WP_003817151.1|1022110_1023286_-	FliC/FljB family flagellin	NA	NA	NA	NA	NA
WP_010929584.1|1023328_1024279_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930130.1|1024377_1025118_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA	NA
WP_010930131.1|1025312_1027349_+	transketolase	NA	NA	NA	NA	NA
WP_010930132.1|1027366_1028377_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_010930133.1|1028494_1029688_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_010930134.1|1029717_1030491_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010930135.1|1030487_1031678_-	acetate kinase	NA	NA	NA	NA	NA
WP_003809454.1|1031703_1032642_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_010930136.1|1032638_1034987_-	DUF3141 domain-containing protein	NA	NA	NA	NA	NA
WP_010930137.1|1035141_1035783_-	glutathione transferase	NA	NA	NA	NA	NA
WP_023853531.1|1035886_1037020_-|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994624.1|1037112_1037265_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930138.1|1037296_1037845_-	DinB family protein	NA	NA	NA	NA	NA
WP_003819814.1|1037863_1038349_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930139.1|1038526_1039465_+	DnaJ domain-containing protein	NA	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	24.1	5.6e-11
WP_003809467.1|1039467_1039785_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247197.1|1039830_1040775_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_010930141.1|1042455_1043106_+	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_003809479.1|1043159_1043495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930142.1|1043491_1044352_+	M23 family metallopeptidase	NA	A0A292GJG6	Xanthomonas_phage	36.1	2.6e-15
WP_003819817.1|1044368_1044650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003809486.1|1044723_1044987_-	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_005012067.1|1045230_1046181_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811933.1|1046479_1047217_-	RNA polymerase sigma factor FliA	NA	NA	NA	NA	NA
WP_010930143.1|1047652_1047976_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA	NA
WP_003811929.1|1048010_1048571_+	flagellar transcriptional regulator FlhC	NA	NA	NA	NA	NA
WP_003811927.1|1048691_1049567_+	flagellar motor stator protein MotA	NA	NA	NA	NA	NA
WP_003817154.1|1049579_1050527_+	flagellar motor protein MotB	NA	NA	NA	NA	NA
WP_019247393.1|1050628_1050922_+	response regulator	NA	NA	NA	NA	NA
WP_010930144.1|1050948_1053006_+	chemotaxis protein CheA	NA	NA	NA	NA	NA
WP_003811919.1|1053020_1053521_+	chemotaxis protein CheW	NA	NA	NA	NA	NA
WP_010930145.1|1053594_1055301_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	41.7	1.4e-12
WP_010930146.1|1056164_1057217_+	chemotaxis response regulator protein-glutamate methylesterase	NA	NA	NA	NA	NA
WP_003811911.1|1057269_1057659_+	chemotaxis response regulator CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	33.3	5.7e-10
WP_003817162.1|1057667_1058300_+	protein phosphatase CheZ	NA	NA	NA	NA	NA
WP_010931363.1|1058399_1059416_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1065400	1125463	4106384	tRNA,holin,transposase,protease	uncultured_Mediterranean_phage(37.5%)	50	NA	NA
WP_015041211.1|1065400_1066828_-|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_010931363.1|1067765_1068782_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003809411.1|1069114_1070050_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.5	3.0e-41
WP_010930154.1|1070099_1071980_-	protein translocase subunit SecD	NA	NA	NA	NA	NA
WP_003809416.1|1072046_1072391_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	40.4	1.0e-10
WP_010930155.1|1072535_1073672_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.4	1.9e-85
WP_023853534.1|1073668_1074742_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003809423.1|1074899_1076336_+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA	NA
WP_010930157.1|1076426_1077068_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_023853536.1|1077403_1078420_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|1080462_1081413_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930160.1|1082615_1084037_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_003809431.1|1084300_1085017_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003809432.1|1085101_1085419_+	DUF883 domain-containing protein	NA	NA	NA	NA	NA
WP_003819794.1|1085459_1085873_+|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_010930161.1|1085874_1086234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023853525.1|1086276_1087821_-	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA	NA
WP_010930163.1|1087904_1088735_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_010930164.1|1088769_1089924_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_010930165.1|1089966_1090839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014486065.1|1090955_1093244_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_003809441.1|1094450_1094915_+	barstar family protein	NA	NA	NA	NA	NA
WP_005013747.1|1094941_1095892_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698393.1|1095909_1096047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930167.1|1096259_1097036_-	phosphate ABC transporter ATP-binding protein PstB	NA	G9BWD6	Planktothrix_phage	28.7	4.3e-17
WP_003809638.1|1097080_1097938_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_010930169.1|1097959_1098976_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_014486066.1|1099110_1100151_-	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	40.2	2.1e-51
WP_010930171.1|1100345_1102427_-	polyphosphate kinase 1	NA	NA	NA	NA	NA
WP_010930172.1|1102662_1104156_+	exopolyphosphatase	NA	NA	NA	NA	NA
WP_003809629.1|1104386_1105181_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003819875.1|1105401_1106760_-	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_010930173.1|1106756_1107599_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	32.5	3.2e-26
WP_010930174.1|1107617_1109504_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	M4QMW8	Micromonas_pusilla_virus	41.5	1.4e-109
WP_162096758.1|1109445_1109697_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930175.1|1109741_1110374_-	RlmE family RNA methyltransferase	NA	NA	NA	NA	NA
WP_003809618.1|1110392_1110995_+	YhbY family RNA-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|1111146_1112097_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_161633091.1|1112677_1113385_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_003812707.1|1113743_1114730_-	homoserine kinase	NA	NA	NA	NA	NA
WP_010930178.1|1114869_1115883_+|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_005012067.1|1115879_1116830_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_155120815.1|1116847_1116988_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003812703.1|1116942_1117401_-	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_003812701.1|1117437_1118751_-	YihY family inner membrane protein	NA	NA	NA	NA	NA
WP_010930180.1|1118768_1119140_+	DUF2069 domain-containing protein	NA	NA	NA	NA	NA
WP_019248549.1|1119136_1120600_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	32.5	1.7e-43
WP_010930182.1|1120740_1121469_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010930183.1|1121450_1124300_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010929591.1|1124512_1125463_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 13
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1156529	1218700	4106384	tRNA,transposase	Erysipelothrix_phage(33.33%)	50	NA	NA
WP_010930198.1|1156529_1157480_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019248935.1|1157578_1158202_-	serotype 2 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930200.1|1158375_1160658_-	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_010930201.1|1160812_1163509_-	alpha-ketoglutarate dehydrogenase	NA	NA	NA	NA	NA
WP_010930202.1|1163634_1164123_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_003813631.1|1166533_1169404_+	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA	NA
WP_010930204.1|1169449_1170664_+	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA	NA
WP_003813626.1|1170893_1172321_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.1	2.1e-41
WP_023853245.1|1172418_1173510_+	cell division protein ZapE	NA	NA	NA	NA	NA
WP_010930206.1|1173522_1174281_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003813621.1|1174368_1175271_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|1175267_1176218_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930207.1|1176347_1177331_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003813618.1|1177385_1178108_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930211.1|1179586_1180942_+|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930212.1|1181022_1183398_-	RNA-binding transcriptional accessory protein Tex	NA	NA	NA	NA	NA
WP_010930213.1|1183562_1185638_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	30.0	2.4e-75
WP_003813594.1|1185699_1186500_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_010930214.1|1186601_1187564_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_019247742.1|1187551_1188307_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA	NA
WP_010930216.1|1188414_1190052_+	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_003813586.1|1190119_1190857_+	acetoacetyl-CoA reductase	NA	NA	NA	NA	NA
WP_003813585.1|1190959_1191535_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA	NA
WP_010930217.1|1191707_1192244_+	iron transporter	NA	NA	NA	NA	NA
WP_003813580.1|1192246_1192591_+	cupredoxin domain-containing protein	NA	NA	NA	NA	NA
WP_010930218.1|1192606_1193452_+	FTR1 family protein	NA	NA	NA	NA	NA
WP_003821443.1|1193490_1194870_+	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_003813574.1|1194947_1195829_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_010929956.1|1195927_1196878_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811632.1|1196874_1197285_-	VOC family protein	NA	NA	NA	NA	NA
WP_010930219.1|1197392_1198247_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_003811636.1|1198239_1199202_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930220.1|1199247_1200372_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	28.3	1.5e-31
WP_019247966.1|1200477_1201356_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930222.1|1201480_1202260_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930223.1|1202413_1203835_+	MFS transporter	NA	NA	NA	NA	NA
WP_010930224.1|1204269_1205967_+	sodium:solute symporter family protein	NA	NA	NA	NA	NA
WP_010930225.1|1206193_1207135_-	LD-carboxypeptidase	NA	NA	NA	NA	NA
WP_010930226.1|1207461_1208208_+	aldolase	NA	NA	NA	NA	NA
WP_033446252.1|1208215_1209142_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930228.1|1209263_1210181_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003811660.1|1210220_1211174_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811662.1|1211198_1211777_+	amino acid synthesis family protein	NA	NA	NA	NA	NA
WP_010930229.1|1213450_1214059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930230.1|1214136_1214490_-	NirD/YgiW/YdeI family stress tolerance protein	NA	NA	NA	NA	NA
WP_010930231.1|1214573_1215563_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_023852977.1|1215559_1215748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076879566.1|1215765_1216716_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010927663.1|1216802_1217753_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|1217749_1218700_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 14
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1269627	1326838	4106384	transposase	Klosneuvirus(16.67%)	49	NA	NA
WP_010931070.1|1269627_1270578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931041.1|1274324_1274936_-	DUF2239 family protein	NA	NA	NA	NA	NA
WP_003812368.1|1275158_1276619_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	41.3	1.6e-97
WP_010931040.1|1276715_1278308_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.3	1.0e-17
WP_019247974.1|1278661_1278919_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003816876.1|1278920_1280261_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_010931038.1|1280356_1281046_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247976.1|1281058_1282489_+	MFS transporter	NA	NA	NA	NA	NA
WP_014905903.1|1284213_1285035_+	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931036.1|1285045_1286617_+	amidohydrolase	NA	NA	NA	NA	NA
WP_010931035.1|1286645_1287623_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931034.1|1287649_1288453_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	38.2	2.7e-30
WP_010931033.1|1288449_1289244_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003816890.1|1289251_1290487_+	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_010931032.1|1290479_1290914_+	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_005013747.1|1291663_1292614_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931031.1|1293235_1294963_-	sulfate permease	NA	NA	NA	NA	NA
WP_010931030.1|1295074_1296433_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_023853289.1|1296489_1296708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1296725_1297676_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931029.1|1297716_1298787_+	FUSC family protein	NA	NA	NA	NA	NA
WP_010931028.1|1298809_1299688_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931027.1|1299859_1300831_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010931026.1|1300993_1301836_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931025.1|1301997_1302678_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010931024.1|1302671_1303841_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010931023.1|1303837_1304869_+	alcohol dehydrogenase catalytic domain-containing protein	NA	A0A2K9L339	Tupanvirus	27.8	1.8e-26
WP_010931022.1|1304912_1306154_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931021.1|1306188_1307721_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_010931020.1|1307801_1308425_+	FMN-binding negative transcriptional regulator	NA	NA	NA	NA	NA
WP_010931019.1|1308455_1309067_+	LysE family translocator	NA	NA	NA	NA	NA
WP_010931018.1|1309102_1309573_+	DUF1801 domain-containing protein	NA	NA	NA	NA	NA
WP_019248147.1|1310004_1311009_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_010931017.1|1311045_1312560_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931016.1|1312563_1313523_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931015.1|1313551_1314355_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931014.1|1314356_1315991_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.1	2.9e-15
WP_010931013.1|1316074_1317136_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_004567322.1|1317334_1317604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931012.1|1317607_1318132_+	DNA-binding protein	NA	J9Q7G7	Salmonella_phage	32.9	6.5e-09
WP_010929591.1|1318547_1319498_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931011.1|1319494_1320529_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_003816758.1|1320637_1321276_+	DedA family protein	NA	NA	NA	NA	NA
WP_019247724.1|1321570_1321798_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003820420.1|1321920_1322634_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_005013747.1|1322878_1323829_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931009.1|1323932_1324214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931008.1|1324328_1325777_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA	NA
WP_005012808.1|1325887_1326838_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 15
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1417071	1469224	4106384	tRNA,transposase	Salmonella_phage(25.0%)	46	NA	NA
WP_005013747.1|1417071_1418022_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023999730.1|1418039_1418192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814065.1|1418188_1418542_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814063.1|1418554_1418917_+	cytochrome c	NA	NA	NA	NA	NA
WP_003814061.1|1418958_1419384_-	DUF1841 family protein	NA	NA	NA	NA	NA
WP_003814059.1|1419586_1420843_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	64.8	1.2e-11
WP_003814057.1|1421041_1422022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005015028.1|1422171_1423413_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1423511_1424462_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814052.1|1424470_1425166_-	two-component system response regulator KdpE	NA	NA	NA	NA	NA
WP_003814050.1|1427987_1428587_-	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA	NA
WP_010930950.1|1428597_1430763_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	27.1	1.2e-24
WP_010930949.1|1430786_1432571_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_017685545.1|1432570_1432660_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_003814042.1|1433354_1433627_+	DUF4212 domain-containing protein	NA	NA	NA	NA	NA
WP_003814040.1|1433626_1435693_+	cation acetate symporter	NA	NA	NA	NA	NA
WP_010929577.1|1435689_1436640_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|1436738_1437689_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015014.1|1437804_1438137_-	multidrug transporter	NA	NA	NA	NA	NA
WP_010929073.1|1438133_1438820_-	Smr/MutS family protein	NA	NA	NA	NA	NA
WP_010930948.1|1438806_1439766_-	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	40.2	3.1e-57
WP_003814032.1|1439807_1442168_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	48.0	7.6e-81
WP_010930946.1|1442167_1442800_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_010930945.1|1442901_1444242_+	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	38.9	1.6e-75
WP_010930944.1|1444288_1445644_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	47.5	1.6e-83
WP_170954289.1|1445769_1446414_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003814024.1|1446358_1446676_-	virulence factor	NA	NA	NA	NA	NA
WP_003814023.1|1446948_1447464_-	hypothetical protein	NA	T1SAR8	Salmonella_phage	44.6	5.1e-06
WP_003814022.1|1447557_1447719_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814021.1|1447734_1448490_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_019247690.1|1448828_1449035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003814020.1|1449042_1449702_-	NAAT family transporter	NA	NA	NA	NA	NA
WP_010930941.1|1449996_1452201_-	TonB-dependent alcaligin siderophore receptor FauA	NA	NA	NA	NA	NA
WP_010930940.1|1452311_1453535_-	alcaligin siderophore export MFS transporter Bcr	NA	S4TR35	Salmonella_phage	29.4	9.8e-24
WP_003814017.1|1453657_1454632_-	alcaligin siderophore biosynthesis transcriptional regulator AlcR	NA	NA	NA	NA	NA
WP_005013753.1|1454699_1455893_-	alcaligin siderophore biosynthesis protein AlcE	NA	NA	NA	NA	NA
WP_003814016.1|1455907_1456708_-	alcaligin siderophore biosynthesis protein AlcD	NA	NA	NA	NA	NA
WP_010930939.1|1456704_1458561_-	alcaligin siderophore biosynthesis protein AlcC	NA	NA	NA	NA	NA
WP_003814014.1|1458557_1459163_-	alcaligin siderophore biosynthesis protein AlcB	NA	NA	NA	NA	NA
WP_003814013.1|1459181_1460567_-	alcaligin siderophore biosynthesis protein AlcA	NA	NA	NA	NA	NA
WP_003814012.1|1461292_1462519_+	cation:proton antiporter	NA	NA	NA	NA	NA
WP_003814011.1|1462607_1463390_+	3-hydroxybutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|1463488_1464439_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814010.1|1464465_1465239_+	peroxide stress protein YaaA	NA	NA	NA	NA	NA
WP_003814009.1|1465250_1466492_+	MFS transporter	NA	NA	NA	NA	NA
WP_076879548.1|1468273_1469224_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 16
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1513149	1581235	4106384	tRNA,transposase	Streptococcus_virus(11.11%)	59	NA	NA
WP_010930416.1|1513149_1513638_+|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_019248504.1|1513755_1514334_+	DJ-1/PfpI family protein	NA	NA	NA	NA	NA
WP_010930418.1|1514439_1514808_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|1514906_1515857_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023994932.1|1515863_1516976_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA	NA
WP_010930419.1|1517662_1518865_+	MFS transporter	NA	NA	NA	NA	NA
WP_004568212.1|1518900_1519047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930420.1|1519068_1521729_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA	NA
WP_010930421.1|1521741_1525146_+	UvrD-helicase domain-containing protein	NA	NA	NA	NA	NA
WP_023995689.1|1525813_1528039_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.5	1.2e-43
WP_010930423.1|1528085_1528412_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_010930424.1|1528462_1529071_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_005013747.1|1529169_1530120_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930425.1|1530189_1530954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930426.1|1530950_1531550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930427.1|1531653_1532505_-	neutral zinc metallopeptidase	NA	A0A1I9SA48	Rhodococcus_phage	35.3	7.0e-37
WP_010928449.1|1532564_1533191_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA	NA
WP_005012067.1|1533187_1534138_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019249265.1|1534236_1535349_-	DUF1513 domain-containing protein	NA	NA	NA	NA	NA
WP_019248041.1|1535338_1536340_-	imelysin family protein	NA	NA	NA	NA	NA
WP_019247498.1|1536445_1537957_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_023853587.1|1537953_1539258_-	imelysin	NA	NA	NA	NA	NA
WP_010930431.1|1539369_1539930_-	membrane protein	NA	NA	NA	NA	NA
WP_010930432.1|1540197_1540752_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	32.0	1.7e-15
WP_010930433.1|1541207_1541423_-	dodecin domain-containing protein	NA	NA	NA	NA	NA
WP_033446228.1|1541677_1544275_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	22.6	1.5e-21
WP_010930435.1|1544271_1545459_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_010930436.1|1546117_1546732_+	serotype 3 fimbrial subunit	NA	NA	NA	NA	NA
WP_010930437.1|1546820_1547948_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA	NA
WP_033446216.1|1547959_1548865_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA	NA
WP_005012067.1|1549757_1550708_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930439.1|1550889_1551642_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_003811112.1|1551710_1552370_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_003811113.1|1552366_1553095_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	39.3	3.3e-35
WP_010930440.1|1553107_1555387_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	32.1	5.9e-06
WP_010930441.1|1555411_1555615_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_010930442.1|1555656_1556289_-	guanylate kinase	NA	A0A218KC48	Bacillus_phage	33.9	2.4e-13
WP_010930443.1|1556424_1557342_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_010930444.1|1557338_1558052_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_003811135.1|1558289_1559060_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003811137.1|1559064_1559664_-	C40 family peptidase	NA	A0A0A8WF62	Clostridium_phage	41.6	1.4e-20
WP_003811138.1|1559908_1561399_+	AMP nucleosidase	NA	NA	NA	NA	NA
WP_010926696.1|1561457_1561742_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930445.1|1561879_1562035_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003811148.1|1562307_1563234_-	YicC family protein	NA	NA	NA	NA	NA
WP_003811149.1|1563370_1564111_+	ribonuclease PH	NA	NA	NA	NA	NA
WP_010930446.1|1564277_1565654_-	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003811152.1|1565835_1566741_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930448.1|1568392_1570195_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_010930449.1|1570321_1570963_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA	NA
WP_005012808.1|1571061_1572012_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930450.1|1572033_1573254_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA	NA
WP_003811164.1|1573439_1574852_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_003811167.1|1574915_1575983_+	PAS domain-containing protein	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.5	1.1e-05
WP_010930451.1|1575982_1577470_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA	NA
WP_010930452.1|1577479_1578424_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811176.1|1578583_1579282_+	pirin family protein	NA	NA	NA	NA	NA
WP_010930453.1|1579359_1580265_+	pirin family protein	NA	NA	NA	NA	NA
WP_005012067.1|1580284_1581235_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 17
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1617184	1672775	4106384	transposase	Brazilian_cedratvirus(25.0%)	47	NA	NA
WP_005013747.1|1617184_1618135_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930486.1|1618193_1618967_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486074.1|1618959_1620516_+	LTA synthase family protein	NA	NA	NA	NA	NA
WP_005013747.1|1620512_1621463_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003810741.1|1622789_1623392_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003810743.1|1623631_1624333_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003816696.1|1624326_1625109_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	25.8	2.0e-09
WP_005012808.1|1625293_1626244_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930483.1|1626342_1627080_-	TerC family protein	NA	A0A0S4KZH7	Pseudomonas_phage	46.6	4.1e-41
WP_010926609.1|1627269_1628028_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930482.1|1628074_1629064_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930481.1|1629241_1630210_-	transporter	NA	NA	NA	NA	NA
WP_010930480.1|1631749_1632718_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010930479.1|1632726_1633668_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_010930478.1|1634141_1635152_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930477.1|1635142_1636657_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_010930476.1|1636653_1638000_+	BatD family protein	NA	NA	NA	NA	NA
WP_010930475.1|1638002_1639037_+	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_023852967.1|1639086_1640712_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	52.2	2.0e-149
WP_005012067.1|1641264_1642215_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930487.1|1642319_1643267_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247865.1|1643320_1645135_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_010930489.1|1645127_1645802_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_023995112.1|1645931_1649006_+	autotransporter SphB2	NA	NA	NA	NA	NA
WP_019247905.1|1649019_1649319_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930492.1|1649633_1650257_-	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_010930493.1|1650500_1651370_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA	NA
WP_010930494.1|1651347_1652292_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247909.1|1652377_1653304_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019247910.1|1653416_1654196_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930497.1|1654186_1655383_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_010930498.1|1655413_1656364_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_010930499.1|1656585_1657275_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930500.1|1657339_1658095_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930501.1|1658146_1659139_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930502.1|1659148_1660102_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811538.1|1660217_1661180_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_019249376.1|1662581_1663010_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005013747.1|1663006_1663957_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_170954298.1|1664250_1664988_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	68.2	1.3e-87
WP_010930504.1|1665411_1666599_-	MFS transporter	NA	NA	NA	NA	NA
WP_019249653.1|1666602_1666983_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930506.1|1668702_1669674_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930507.1|1669687_1670401_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010930508.1|1670405_1671323_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003811452.1|1671429_1671726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010929588.1|1671824_1672775_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 18
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1830542	1889812	4106384	tRNA,transposase,protease	Klosneuvirus(40.0%)	51	NA	NA
WP_005013747.1|1830542_1831493_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930573.1|1831617_1832427_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010929577.1|1832627_1833578_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930574.1|1834851_1836069_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_003818670.1|1837125_1838028_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930576.1|1838104_1838977_+	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA	NA
WP_003818672.1|1839107_1839476_+	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_010930577.1|1839533_1840580_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_010930578.1|1840775_1842032_+	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_003810623.1|1842036_1843374_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003818676.1|1843523_1844480_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247555.1|1844582_1845515_-	acyclic terpene utilization AtuA family protein	NA	NA	NA	NA	NA
WP_019247554.1|1845630_1845951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247553.1|1845943_1846303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930581.1|1846350_1847925_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003810637.1|1847977_1848922_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930582.1|1848939_1849770_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010930583.1|1849762_1851397_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	8.2e-18
WP_010930584.1|1851393_1852749_+	amidase	NA	NA	NA	NA	NA
WP_010930585.1|1853655_1855233_+	lipoprotein	NA	NA	NA	NA	NA
WP_010930586.1|1855236_1856511_+	type 4b pilus protein PilO2	NA	NA	NA	NA	NA
WP_010930587.1|1856608_1856983_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930588.1|1858698_1859832_+	general secretion pathway protein	NA	NA	NA	NA	NA
WP_003810661.1|1859869_1860475_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA	NA
WP_010930589.1|1860471_1861290_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930590.1|1861361_1863986_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	39.4	1.7e-81
WP_004568544.1|1863972_1864227_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_010930591.1|1864293_1864875_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010926757.1|1865178_1865439_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_014905757.1|1865604_1866228_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_003816734.1|1866227_1867001_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_010930593.1|1866997_1868206_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_010930594.1|1868231_1868705_-	RidA family protein	NA	NA	NA	NA	NA
WP_010930048.1|1868778_1869729_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879566.1|1869827_1870778_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930796.1|1870876_1872226_-	two-component sensor histidine kinase	NA	NA	NA	NA	NA
WP_023852900.1|1872991_1873747_+	MipA/OmpV family protein	NA	NA	NA	NA	NA
WP_010930794.1|1873839_1876722_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.1	3.7e-138
WP_003810689.1|1877044_1877470_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.2	2.1e-21
WP_004568542.1|1877497_1878646_+	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_003810693.1|1878642_1879149_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930793.1|1879155_1880451_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA	NA
WP_023995843.1|1880509_1881796_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010930791.1|1881797_1882436_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003810701.1|1882438_1883599_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA	NA
WP_003810703.1|1883625_1884981_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_010930790.1|1884984_1886055_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.7	2.5e-15
WP_003810707.1|1886193_1886430_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_010930789.1|1886517_1887624_+	GTPase HflX	NA	NA	NA	NA	NA
WP_010930788.1|1887589_1888894_+|protease	FtsH protease activity modulator HflK	protease	NA	NA	NA	NA
WP_010930787.1|1888912_1889812_+|protease	protease modulator HflC	protease	NA	NA	NA	NA
>prophage 19
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1900052	1944375	4106384	transposase	Staphylococcus_phage(25.0%)	45	NA	NA
WP_005013747.1|1900052_1901003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|1901101_1902052_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930782.1|1902251_1903337_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_003810400.1|1903352_1904114_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_170954295.1|1904110_1905070_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.6	1.7e-23
WP_010930780.1|1905132_1905633_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930779.1|1905665_1906409_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_010930778.1|1906504_1906744_-	membrane protein	NA	NA	NA	NA	NA
WP_010930777.1|1906757_1906910_-	lipoprotein	NA	NA	NA	NA	NA
WP_010930776.1|1906995_1908486_-	cytochrome c oxidase accessory protein CcoG	NA	NA	NA	NA	NA
WP_010930775.1|1908577_1909516_-	cytochrome-c oxidase, cbb3-type subunit III	NA	NA	NA	NA	NA
WP_003818560.1|1909512_1909689_-	cytochrome oxidase	NA	NA	NA	NA	NA
WP_003810383.1|1909691_1910354_-	cytochrome-c oxidase, cbb3-type subunit II	NA	NA	NA	NA	NA
WP_003810379.1|1911975_1912119_-	cbb3-type cytochrome oxidase assembly protein CcoS	NA	NA	NA	NA	NA
WP_010930774.1|1912115_1913090_-	membrane protein	NA	NA	NA	NA	NA
WP_162268682.1|1912984_1913239_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1913256_1914207_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930773.1|1914203_1915478_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	9.6e-14
WP_010930772.1|1915581_1916775_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA	NA
WP_010930771.1|1916771_1917425_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930770.1|1917421_1918858_+	dethiobiotin synthase	NA	NA	NA	NA	NA
WP_010930769.1|1918845_1919205_+	CidA/LrgA family protein	NA	NA	NA	NA	NA
WP_162268681.1|1920019_1920160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|1920177_1921128_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930768.1|1922173_1924039_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930767.1|1924296_1925817_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003816959.1|1925904_1926555_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930766.1|1927503_1928799_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_010930765.1|1928820_1929705_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930764.1|1929803_1930679_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA	NA
WP_003816964.1|1930668_1931025_-	DUF1428 domain-containing protein	NA	NA	NA	NA	NA
WP_010930763.1|1931155_1932130_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003812228.1|1932259_1932439_-	DUF3008 family protein	NA	NA	NA	NA	NA
WP_029443822.1|1932536_1933061_+	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_010930761.1|1933071_1933908_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003816971.1|1934020_1934392_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010930760.1|1934388_1934940_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_003816975.1|1934955_1936647_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.3	5.0e-42
WP_003816977.1|1936695_1937376_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014905663.1|1937623_1938088_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930758.1|1938257_1939187_+	ZIP family metal transporter	NA	NA	NA	NA	NA
WP_019247659.1|1939199_1939847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023997035.1|1939920_1941738_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.3e-37
WP_005012067.1|1941821_1942772_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929577.1|1943424_1944375_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 20
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	1974154	2038523	4106384	transposase	Vibrio_phage(20.0%)	51	NA	NA
WP_005013747.1|1974154_1975105_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005015810.1|1975326_1976277_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023852887.1|1976375_1977341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930740.1|1977478_1978378_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930739.1|1980972_1982460_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_014486081.1|1982470_1983667_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA	NA
WP_003816680.1|1983739_1985059_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010930737.1|1985055_1985931_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930736.1|1985961_1987110_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930735.1|1987127_1987442_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA	NA
WP_062810228.1|1987463_1988186_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003816690.1|1988185_1989004_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003816691.1|1989008_1989536_-	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA	NA
WP_010930733.1|1989541_1990798_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA	NA
WP_010930732.1|1991156_1992296_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930731.1|1992373_1993246_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010930730.1|1994116_1995067_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930729.1|1995026_1995662_-	membrane protein	NA	NA	NA	NA	NA
WP_010930728.1|1996021_1997344_-	isocitrate lyase	NA	NA	NA	NA	NA
WP_010930727.1|1997662_1998484_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.6	4.1e-42
WP_003810356.1|1999908_2000481_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_010930726.1|2000520_2002350_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_010930725.1|2002312_2003371_-	beta-N-acetylhexosaminidase	NA	NA	NA	NA	NA
WP_010930724.1|2003408_2003870_-	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003810344.1|2003954_2004701_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_019247651.1|2006191_2009422_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA	NA
WP_019248531.1|2009488_2010820_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_010930721.1|2011072_2011447_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010930720.1|2011549_2012728_-	patatin-like phospholipase family protein	NA	NA	NA	NA	NA
WP_003810329.1|2012738_2013329_-	DUF4136 domain-containing protein	NA	NA	NA	NA	NA
WP_003818535.1|2013439_2014246_+	TOBE domain-containing protein	NA	NA	NA	NA	NA
WP_010930719.1|2014271_2015066_-	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	25.7	5.1e-05
WP_010930718.1|2016066_2017041_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003818533.1|2017199_2017712_-	superoxide dismutase family protein	NA	Q9MC02	Salmonella_phage	52.3	1.8e-43
WP_003818532.1|2017868_2018840_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930717.1|2020584_2021391_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010930716.1|2021387_2022689_-	malonyl-CoA decarboxylase family protein	NA	NA	NA	NA	NA
WP_010930715.1|2022639_2023404_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930714.1|2023517_2024288_-	spermidine synthase	NA	NA	NA	NA	NA
WP_010930713.1|2024372_2025560_-	acetyl-CoA C-acyltransferase family protein	NA	NA	NA	NA	NA
WP_003818524.1|2025632_2026007_-	tautomerase family protein	NA	NA	NA	NA	NA
WP_003810308.1|2026107_2027370_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	36.6	6.8e-28
WP_003810306.1|2027366_2028224_-	proline/glycine betaine ABC transporter permease	NA	NA	NA	NA	NA
WP_003818523.1|2028396_2029398_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2029849_2030800_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930712.1|2032315_2033515_+	multidrug effflux MFS transporter	NA	NA	NA	NA	NA
WP_003810297.1|2033883_2034120_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_010930711.1|2034183_2034351_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_010930710.1|2034464_2036270_-	STAS domain-containing protein	NA	A0A2H4J153	uncultured_Caudovirales_phage	27.5	2.2e-19
WP_062826579.1|2036523_2037474_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2037572_2038523_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 21
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2170052	2219705	4106384	tRNA,transposase	Synechococcus_phage(15.38%)	43	NA	NA
WP_005012067.1|2170052_2171003_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_076879626.1|2171101_2173096_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	33.3	4.4e-21
WP_010930543.1|2173155_2174121_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA	NA
WP_010930542.1|2174110_2176972_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	25.5	1.0e-71
WP_010930541.1|2176974_2177481_+	lipoprotein signal peptidase	NA	NA	NA	NA	NA
WP_010930540.1|2177585_2178794_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	30.0	3.8e-36
WP_033446178.1|2178795_2179734_-	membrane protein	NA	NA	NA	NA	NA
WP_010930538.1|2179895_2180369_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012808.1|2180365_2181316_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_004566334.1|2181426_2181867_-	DUF937 domain-containing protein	NA	NA	NA	NA	NA
WP_010930537.1|2181995_2183225_-	lytic murein transglycosylase	NA	NA	NA	NA	NA
WP_004566336.1|2183263_2184085_-	ferritin-like domain-containing protein	NA	NA	NA	NA	NA
WP_029443743.1|2184138_2185290_+	N-acetyltransferase	NA	NA	NA	NA	NA
WP_010930535.1|2185381_2185870_-	DUF1854 domain-containing protein	NA	NA	NA	NA	NA
WP_019247811.1|2188420_2190970_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_010930533.1|2191040_2193614_+	cyanophycin synthetase	NA	NA	NA	NA	NA
WP_003813568.1|2193879_2194080_+	CsbD family protein	NA	NA	NA	NA	NA
WP_003813570.1|2194111_2194273_+	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_003813572.1|2194330_2194669_+	BON domain-containing protein	NA	NA	NA	NA	NA
WP_005012067.1|2194817_2195768_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247882.1|2196542_2197211_+	arylesterase	NA	NA	NA	NA	NA
WP_019247881.1|2197192_2199208_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_004568486.1|2199390_2200140_+	glycerophosphodiester phosphodiesterase	NA	A0A2H4PGQ5	Escherichia_phage	27.8	1.5e-14
WP_003816518.1|2200152_2201016_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA	NA
WP_003816520.1|2201019_2202435_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA	NA
WP_010930530.1|2202568_2203297_-	redoxin family protein	NA	A0A1D8KSL1	Synechococcus_phage	56.8	9.6e-43
WP_003811035.1|2203435_2203636_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA	NA
WP_003816523.1|2203811_2204210_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_003816525.1|2204233_2205634_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	26.5	7.3e-31
WP_010930529.1|2205752_2206505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930528.1|2206793_2207393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248494.1|2207497_2208277_-	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_003811022.1|2208273_2209158_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	49.5	4.6e-15
WP_019247478.1|2209175_2209955_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	46.9	4.8e-32
WP_010930526.1|2209939_2210698_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	51.2	1.4e-68
WP_003811015.1|2210823_2211471_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_010929632.1|2211738_2212755_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930524.1|2212852_2213893_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	51.3	6.1e-91
WP_003811011.1|2214027_2215320_+	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	36.0	1.7e-66
WP_003811007.1|2216679_2217063_+	thioredoxin family protein	NA	V9SJ74	Achromobacter_phage	25.8	8.1e-09
WP_010930523.1|2217080_2217668_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	35.8	4.7e-16
WP_005012067.1|2217705_2218656_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930048.1|2218754_2219705_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 22
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2227429	2287440	4106384	transposase,protease	uncultured_Caudovirales_phage(33.33%)	60	NA	NA
WP_005012067.1|2227429_2228380_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930522.1|2228478_2229429_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809939.1|2229425_2229698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930805.1|2229956_2232668_-	autotransporter BapA	NA	NA	NA	NA	NA
WP_010930806.1|2233322_2234780_+	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003820087.1|2234776_2235127_-	STAS domain-containing protein	NA	NA	NA	NA	NA
WP_003809933.1|2235270_2235699_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_010930807.1|2235782_2236946_+	alanine racemase	NA	NA	NA	NA	NA
WP_023995091.1|2236942_2239384_-	MFS transporter	NA	NA	NA	NA	NA
WP_010930809.1|2239468_2241490_+	SpoIIE family protein phosphatase	NA	NA	NA	NA	NA
WP_014905553.1|2241486_2242674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023995090.1|2244000_2244201_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930812.1|2244237_2244936_+	type III secretion system regulator BspR	NA	NA	NA	NA	NA
WP_003809919.1|2245110_2245713_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_010930813.1|2245733_2247536_-	SctC family type III secretion system outer membrane ring subunit BscC	NA	NA	NA	NA	NA
WP_010930814.1|2247526_2247925_-	type III secretion system protein BscW	NA	NA	NA	NA	NA
WP_010930815.1|2247921_2248971_-	SctU family type III secretion system export apparatus subunit BscU	NA	NA	NA	NA	NA
WP_010930816.1|2248967_2249768_-	SctT family type III secretion system export apparatus subunit BscT	NA	NA	NA	NA	NA
WP_010930817.1|2249779_2250046_-	SctS family type III secretion system export apparatus subunit BscS	NA	NA	NA	NA	NA
WP_004568087.1|2250051_2250723_-	SctR family type III secretion system export apparatus subunit BscR	NA	NA	NA	NA	NA
WP_010930818.1|2250719_2251799_-	SctQ family type III secretion system cytoplasmic ring protein BscQ	NA	NA	NA	NA	NA
WP_010930819.1|2251795_2252344_-	type III secretion system protein BscP	NA	NA	NA	NA	NA
WP_003820063.1|2252340_2252850_-	type III secretion system central stalk protein BscO	NA	NA	NA	NA	NA
WP_003820061.1|2252849_2254184_-	SctN family type III secretion system ATPase BscN	NA	NA	NA	NA	NA
WP_010930820.1|2254188_2254827_-	SctL family type III secretion system stator protein BscL	NA	NA	NA	NA	NA
WP_003820059.1|2254796_2255459_-	type III secretion system sorting platform protein BscK	NA	NA	NA	NA	NA
WP_010930821.1|2255451_2256276_-	SctJ family type III secretion inner membrane ring lipoprotein Bsc	NA	NA	NA	NA	NA
WP_019248576.1|2256272_2256680_-	SctI family type III secretion system inner rod subunit BscI	NA	NA	NA	NA	NA
WP_010930823.1|2256676_2257198_-	type III secretion system protein Bcr4	NA	NA	NA	NA	NA
WP_003809889.1|2257202_2257664_-	SycD/LcrH family type III secretion system chaperone BcrH2	NA	NA	NA	NA	NA
WP_010930824.1|2257687_2258896_-	type III secretion system translocon subunit BopB	NA	NA	NA	NA	NA
WP_010930825.1|2258919_2259861_-	type III secretion system translocon subunit SctB	NA	NA	NA	NA	NA
WP_004568102.1|2259908_2260394_-	SycD/LcrH family type III secretion system chaperone BcrH1	NA	NA	NA	NA	NA
WP_010930826.1|2260409_2260685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820049.1|2260706_2261324_-	type III secretion system needle tip complex Bsp22	NA	NA	NA	NA	NA
WP_010930827.1|2261487_2262585_+	SctW family type III secretion system gatekeeper subunit BopN	NA	NA	NA	NA	NA
WP_010930828.1|2262581_2262959_+	type III secretion chaperone SycN	NA	NA	NA	NA	NA
WP_010930829.1|2262963_2263374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930830.1|2263370_2263739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930831.1|2263735_2265835_+	SctV family type III secretion system export apparatus subunit BcrD	NA	NA	NA	NA	NA
WP_010930832.1|2265831_2267112_+	SctD family type III secretion system inner membrane ring subunit BscD	NA	NA	NA	NA	NA
WP_003820040.1|2267152_2267452_+	type III secretion system protein BscE	NA	NA	NA	NA	NA
WP_003809869.1|2267441_2267708_+	type III secretion system protein BscF	NA	NA	NA	NA	NA
WP_010930833.1|2267743_2268199_-	CesT family type III secretion system chaperone	NA	NA	NA	NA	NA
WP_005012067.1|2268540_2269491_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931070.1|2269589_2270540_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003809615.1|2270841_2271318_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_019247142.1|2271941_2273579_+	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	30.2	8.8e-12
WP_003809610.1|2273609_2274923_-	pyrimidine permease	NA	Q9KX94	Enterobacteria_phage	67.1	2.1e-149
WP_004568205.1|2275056_2275374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852827.1|2275474_2276797_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010929591.1|2276793_2277744_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930836.1|2278273_2279296_-	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003820286.1|2279324_2280155_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_029443740.1|2280171_2281869_-	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_010930838.1|2281933_2283010_-	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.8	1.2e-28
WP_010930839.1|2283169_2284033_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930840.1|2284063_2284633_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010930841.1|2284649_2285501_-	sulfurtransferase	NA	NA	NA	NA	NA
WP_003813142.1|2286558_2287440_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 23
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2477059	2535303	4106384	tRNA,transposase	Planktothrix_phage(28.57%)	54	NA	NA
WP_005012067.1|2477059_2478010_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930388.1|2478489_2479146_-	phosphoribosylanthranilate isomerase	NA	NA	NA	NA	NA
WP_010930387.1|2479160_2480828_-	TRAP transporter large permease subunit	NA	NA	NA	NA	NA
WP_010930386.1|2480830_2481460_-	TRAP transporter small permease subunit	NA	NA	NA	NA	NA
WP_014486072.1|2481671_2482766_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930384.1|2482910_2483723_-|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_023853502.1|2483726_2485430_-	FimV N-terminal domain protein	NA	NA	NA	NA	NA
WP_010930382.1|2485480_2486611_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010930381.1|2486797_2487874_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_010930380.1|2487955_2488606_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_010930379.1|2488620_2490024_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_004567445.1|2490307_2491126_-	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010930378.1|2491122_2491827_-	phosphate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.0	2.6e-13
WP_010930377.1|2492726_2493842_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_004567447.1|2493875_2494250_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010930376.1|2494272_2495430_-	formate dehydrogenase subunit gamma	NA	NA	NA	NA	NA
WP_003812666.1|2495442_2495676_-	lipoprotein	NA	NA	NA	NA	NA
WP_019247523.1|2496310_2499280_-	formate dehydrogenase subunit alpha	NA	NA	NA	NA	NA
WP_023853518.1|2499294_2499504_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019248667.1|2499655_2500285_-	molecular chaperone TorD family protein	NA	NA	NA	NA	NA
WP_010930373.1|2500281_2502372_-	4Fe-4S binding protein	NA	NA	NA	NA	NA
WP_010930372.1|2502395_2503076_-	DUF3306 domain-containing protein	NA	NA	NA	NA	NA
WP_003820494.1|2503072_2503633_-	DUF3305 domain-containing protein	NA	NA	NA	NA	NA
WP_004567450.1|2503639_2504737_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA	NA
WP_010930371.1|2504889_2505483_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA	NA
WP_010930370.1|2505479_2506772_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_003812685.1|2506785_2507328_+	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA	NA
WP_010930369.1|2507337_2508174_-	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003820487.1|2508207_2509269_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	42.8	2.9e-80
WP_019247210.1|2509310_2510363_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_019247209.1|2510378_2510681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012808.1|2510822_2511773_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268680.1|2511790_2511955_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930368.1|2511951_2513646_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_003809599.1|2513642_2514728_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.4e-27
WP_010930367.1|2514775_2515675_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003809593.1|2515685_2516330_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_010930366.1|2517351_2520594_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_023852833.1|2520604_2521759_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.4	3.3e-53
WP_010930364.1|2521985_2522948_+	transaldolase	NA	H6WFR1	Cyanophage	29.2	7.5e-11
WP_076879624.1|2523046_2523997_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930363.1|2524095_2525046_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930362.1|2525055_2525745_-	VIT family protein	NA	NA	NA	NA	NA
WP_003811741.1|2525804_2526242_-	PaaI family thioesterase	NA	NA	NA	NA	NA
WP_003811743.1|2526287_2527181_-	3-hydroxyisobutyrate dehydrogenase	NA	NA	NA	NA	NA
WP_003811746.1|2527228_2528401_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003811748.1|2528397_2529552_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_003811750.1|2529748_2530099_-	RnfH family protein	NA	NA	NA	NA	NA
WP_003811752.1|2530088_2530523_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_010930800.1|2530539_2531490_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811754.1|2531637_2532105_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	45.1	6.2e-27
WP_010930360.1|2532085_2533243_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	36.2	2.3e-14
WP_003811759.1|2533308_2534235_-	paraslipin	NA	NA	NA	NA	NA
WP_005012067.1|2534352_2535303_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 24
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2577580	2644080	4106384	transposase	uncultured_Caudovirales_phage(40.0%)	56	NA	NA
WP_005012067.1|2577580_2578531_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811850.1|2578900_2579473_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA	NA
WP_003811852.1|2579475_2580486_+	flagellar motor switch protein FliM	NA	NA	NA	NA	NA
WP_010930335.1|2580478_2580979_+	flagellar motor switch protein FliN	NA	NA	NA	NA	NA
WP_003811855.1|2580989_2581331_+	flagellar biosynthetic protein FliO	NA	NA	NA	NA	NA
WP_015041547.1|2581342_2582134_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA	NA
WP_003811859.1|2582150_2582420_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA	NA
WP_010930333.1|2582442_2583231_+	flagellar biosynthetic protein FliR	NA	NA	NA	NA	NA
WP_010929632.1|2583277_2584294_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_014486070.1|2584510_2585953_-	PAS domain-containing protein	NA	A0A1B0V854	Salmonella_phage	41.8	1.0e-35
WP_010930332.1|2586131_2587751_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	45.3	1.5e-08
WP_077071158.1|2587871_2589692_-	Tar ligand binding domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	67.4	5.6e-07
WP_010930330.1|2589770_2591303_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA	NA
WP_010930329.1|2591336_2592983_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA	NA
WP_010930328.1|2593052_2594075_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	A0A088F6W1	Sulfitobacter_phage	31.4	1.9e-12
WP_010930327.1|2594092_2595226_-	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA	NA
WP_010930326.1|2595228_2595918_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA	NA
WP_010930325.1|2595917_2596703_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA	NA
WP_003817181.1|2596746_2597511_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA	NA
WP_003817180.1|2597549_2598971_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_010930324.1|2599036_2599741_-	flagellar basal body rod modification protein FlgD	NA	NA	NA	NA	NA
WP_003817176.1|2599788_2600208_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA	NA
WP_010930323.1|2600220_2600628_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA	NA
WP_010930322.1|2600811_2601522_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA	NA
WP_003817172.1|2601648_2601939_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA	NA
WP_003817170.1|2601956_2602439_+	flagellar protein FlgN	NA	NA	NA	NA	NA
WP_010930321.1|2606944_2608099_-	flagellar type III secretion system protein FlhB	NA	NA	NA	NA	NA
WP_010931363.1|2608404_2609421_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010930319.1|2609667_2610456_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003812020.1|2610522_2611203_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812022.1|2611199_2611970_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	9.8e-30
WP_010930208.1|2612068_2613019_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811401.1|2613074_2613992_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_003811400.1|2614002_2615181_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA	NA
WP_010930318.1|2615200_2616196_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811396.1|2617784_2618393_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_003811393.1|2618380_2619421_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003811391.1|2619438_2620401_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_003811389.1|2620397_2621591_-	CoA transferase	NA	NA	NA	NA	NA
WP_010930317.1|2621587_2622385_-	citryl-CoA lyase	NA	NA	NA	NA	NA
WP_014486069.1|2622410_2623397_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930316.1|2623415_2625455_-	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_010930315.1|2625656_2626337_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930314.1|2626350_2627262_-	CoA ester lyase	NA	NA	NA	NA	NA
WP_003811381.1|2627258_2627837_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_010930313.1|2627975_2628881_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930312.1|2628888_2632308_+	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA	NA
WP_010930311.1|2632295_2634896_-	BP1344/BB2830 family autotransporter	NA	NA	NA	NA	NA
WP_003811375.1|2635851_2636484_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003811372.1|2636877_2637636_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003811370.1|2637632_2638835_+	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010930208.1|2639022_2639973_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930310.1|2640880_2642026_+	DUF3182 family protein	NA	NA	NA	NA	NA
WP_019247449.1|2642012_2642768_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003811361.1|2642884_2643064_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010930208.1|2643129_2644080_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 25
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2672195	2709607	4106384	transposase	Planktothrix_phage(33.33%)	39	NA	NA
WP_005012067.1|2672195_2673146_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012067.1|2673244_2674195_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811316.1|2674287_2674827_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_023852799.1|2674933_2675278_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	58.4	3.0e-31
WP_010930298.1|2675335_2676784_-	CoA transferase	NA	NA	NA	NA	NA
WP_003811313.1|2676971_2677307_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_010930297.1|2678934_2680113_+	DUF1501 domain-containing protein	NA	NA	NA	NA	NA
WP_003811310.1|2680195_2680696_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	38.4	4.7e-25
WP_010930296.1|2680805_2681507_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010930295.1|2681518_2681983_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_023852802.1|2681997_2682273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811306.1|2682269_2683046_+	lipoate--protein ligase family protein	NA	NA	NA	NA	NA
WP_010930294.1|2683074_2683902_+	DUF3298 domain-containing protein	NA	NA	NA	NA	NA
WP_010930293.1|2684027_2684498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003811301.1|2684624_2685518_+	phosphatidylserine decarboxylase	NA	NA	NA	NA	NA
WP_010930292.1|2685565_2686747_+	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA	NA
WP_003811298.1|2686759_2687575_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930291.1|2687708_2688236_-	RES family NAD+ phosphorylase	NA	NA	NA	NA	NA
WP_003811295.1|2688232_2688730_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_003811293.1|2688877_2689255_+	DUF423 domain-containing protein	NA	NA	NA	NA	NA
WP_010929584.1|2689476_2690427_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003811244.1|2690525_2691137_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_010930290.1|2691371_2692499_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930289.1|2692609_2693698_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	31.2	2.2e-19
WP_003811259.1|2693750_2694602_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA	NA
WP_003811262.1|2694621_2695503_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA	NA
WP_010930288.1|2695679_2696993_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA	NA
WP_003811267.1|2697203_2698037_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA	NA
WP_010930287.1|2698033_2698615_+	queuosine precursor transporter	NA	A0A2I7SAW6	Vibrio_phage	37.3	9.4e-17
WP_005015810.1|2698968_2699919_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010930286.1|2699934_2701050_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_077071159.1|2701152_2702079_+	high-affinity branched-chain amino acid ABC transporter permease LivH	NA	NA	NA	NA	NA
WP_010930285.1|2702078_2703317_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA	NA
WP_003811277.1|2703313_2704081_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	1.2e-14
WP_010930284.1|2704081_2704783_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.4	1.3e-17
WP_019247793.1|2704864_2705311_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010930283.1|2706200_2706839_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_005012808.1|2707607_2708558_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005012808.1|2708656_2709607_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 26
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2808734	2863251	4106384	transposase	Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)	48	NA	NA
WP_023853639.1|2808734_2809685_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931071.1|2810013_2810619_+	fimbrial major subunit FimX	NA	NA	NA	NA	NA
WP_010931072.1|2810672_2811986_-	phenylacetate--CoA ligase	NA	NA	NA	NA	NA
WP_003813284.1|2812060_2812531_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA	NA
WP_010931073.1|2812530_2813319_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA	NA
WP_010931074.1|2813329_2814982_-	phenylacetic acid degradation protein PaaN	NA	NA	NA	NA	NA
WP_010929591.1|2815069_2816020_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931075.1|2817181_2817688_-	phenylacetate-CoA oxygenase subunit PaaJ	NA	NA	NA	NA	NA
WP_003813293.1|2817684_2818449_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA	NA
WP_010931076.1|2818464_2818749_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA	NA
WP_003813298.1|2818813_2819803_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA	NA
WP_010931077.1|2819974_2820904_+	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA	NA
WP_003813302.1|2820875_2821562_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA	NA
WP_003813303.1|2821595_2822141_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	37.7	2.1e-26
WP_003813306.1|2822185_2823451_+	M48 family metallopeptidase	NA	NA	NA	NA	NA
WP_003813309.1|2823447_2824350_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA	NA
WP_019247679.1|2825531_2826476_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931079.1|2826570_2828088_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010931080.1|2828129_2829758_-	gamma-glutamyltransferase	NA	NA	NA	NA	NA
WP_003811986.1|2829865_2830747_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931081.1|2833859_2834234_+	endonuclease	NA	F4YXR7	Roseobacter_phage	54.4	2.1e-25
WP_003812004.1|2834258_2834597_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931082.1|2834640_2836275_-	NAD+ synthase	NA	A0A2L0UZF5	Agrobacterium_phage	36.6	8.3e-87
WP_010931083.1|2836313_2837660_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_003812010.1|2837767_2839189_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_010931084.1|2839258_2839843_-	nitroreductase	NA	NA	NA	NA	NA
WP_005012067.1|2839945_2840896_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931085.1|2841030_2842137_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010931086.1|2842147_2843245_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA	NA
WP_010931087.1|2843389_2844595_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA	NA
WP_010931088.1|2844601_2845123_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA	NA
WP_010931089.1|2845119_2845611_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA	NA
WP_003819740.1|2845607_2845859_-	MoaD/ThiS family protein	NA	NA	NA	NA	NA
WP_003819741.1|2845839_2846325_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA	NA
WP_010931090.1|2846460_2849922_+	DUF748 domain-containing protein	NA	NA	NA	NA	NA
WP_010931091.1|2849939_2850824_+	dienelactone hydrolase family protein	NA	NA	NA	NA	NA
WP_010931092.1|2850833_2851265_-	lipoprotein	NA	NA	NA	NA	NA
WP_003809348.1|2851511_2852015_+	peroxiredoxin	NA	M1I839	Pelagibacter_phage	44.1	1.8e-24
WP_010931094.1|2852092_2853493_+	MFS transporter	NA	NA	NA	NA	NA
WP_010931095.1|2853567_2854443_-	membrane protein	NA	NA	NA	NA	NA
WP_023853546.1|2854439_2855447_-	biotin synthase BioB	NA	NA	NA	NA	NA
WP_010931097.1|2855914_2856220_+	DUF4148 domain-containing protein	NA	NA	NA	NA	NA
WP_003819753.1|2856310_2856901_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010930525.1|2857091_2858108_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010931098.1|2858299_2860636_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	42.8	3.2e-124
WP_003812014.1|2860718_2861153_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_023995489.1|2861251_2862202_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|2862300_2863251_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 27
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2871276	2928062	4106384	transposase,protease	uncultured_Mediterranean_phage(28.57%)	41	NA	NA
WP_005012067.1|2871276_2872227_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931105.1|2873933_2874200_-	accessory factor UbiK family protein	NA	NA	NA	NA	NA
WP_003812839.1|2874907_2875246_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_010931107.1|2879799_2880402_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931108.1|2880498_2881788_+	MFS transporter	NA	NA	NA	NA	NA
WP_003812846.1|2881845_2882577_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.4e-12
WP_010931109.1|2882573_2883377_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	23.5	7.9e-14
WP_003812851.1|2883373_2884462_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_003820410.1|2884458_2885388_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003812857.1|2885536_2886682_-	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930800.1|2886703_2887654_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_154698391.1|2887671_2887830_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931110.1|2887984_2891806_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_010931111.1|2891962_2892631_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_014905522.1|2892635_2894309_-	MCE family protein	NA	NA	NA	NA	NA
WP_003820402.1|2894327_2895647_-	PqiA/YebS family transporter subunit	NA	NA	NA	NA	NA
WP_010931114.1|2895651_2897967_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	4.1e-164
WP_010931115.1|2898022_2900191_-	penicillin-binding protein 1C	NA	NA	NA	NA	NA
WP_010931116.1|2900187_2905377_-	alpha-2-macroglobulin family protein	NA	NA	NA	NA	NA
WP_003820400.1|2905466_2905781_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.8	1.2e-10
WP_003812875.1|2906008_2906254_+	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	76.6	1.3e-20
WP_003820399.1|2906348_2906867_+	DUF192 domain-containing protein	NA	A0A1B1IUW8	uncultured_Mediterranean_phage	42.2	5.1e-14
WP_010931117.1|2906966_2908172_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_019247560.1|2908287_2909685_-	chloride channel protein	NA	NA	NA	NA	NA
WP_010931119.1|2909801_2910380_-	superoxide dismutase [Fe]	NA	NA	NA	NA	NA
WP_010931120.1|2910452_2911844_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	32.0	1.4e-29
WP_005012067.1|2912011_2912962_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003812889.1|2913242_2913863_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA	NA
WP_010931122.1|2913859_2914273_+	biopolymer transporter ExbD	NA	NA	NA	NA	NA
WP_010931123.1|2914269_2915313_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA	NA
WP_003812895.1|2915368_2915557_+	Trm112 family protein	NA	NA	NA	NA	NA
WP_010931124.1|2915566_2916331_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_010931125.1|2916421_2917078_+	adenylate kinase	NA	NA	NA	NA	NA
WP_010931126.1|2917169_2917928_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_010931127.1|2917953_2919555_+	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA	NA
WP_010931128.1|2919755_2920760_+	FecR domain-containing protein	NA	NA	NA	NA	NA
WP_003812908.1|2920860_2921124_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_010931129.1|2921241_2922018_-	2-dehydro-3-deoxyglucarate aldolase	NA	NA	NA	NA	NA
WP_005012067.1|2922608_2923559_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931130.1|2925942_2927055_-	Ldh family oxidoreductase	NA	NA	NA	NA	NA
WP_005012808.1|2927111_2928062_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 28
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	2958448	3002139	4106384	transposase	Planktothrix_phage(33.33%)	41	NA	NA
WP_005012067.1|2958448_2959399_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_162268686.1|2959416_2959566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023852715.1|2959519_2960416_-	inositol monophosphatase	NA	NA	NA	NA	NA
WP_003814547.1|2962693_2964919_+	glycoside hydrolase family 31 protein	NA	NA	NA	NA	NA
WP_003814544.1|2965083_2966172_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	36.4	8.7e-32
WP_019247918.1|2966128_2966782_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931144.1|2966829_2967627_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010930176.1|2968158_2969109_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247277.1|2969183_2970338_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_005012067.1|2970394_2971345_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_003814535.1|2971443_2971749_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003820797.1|2971777_2972212_-	DUF126 domain-containing protein	NA	NA	NA	NA	NA
WP_010931147.1|2972213_2973458_-	DUF521 domain-containing protein	NA	NA	NA	NA	NA
WP_003820799.1|2973454_2974165_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_033446288.1|2974179_2975091_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931149.1|2975453_2975858_+	hypothetical protein	NA	NA	NA	NA	NA
WP_019247890.1|2975854_2976313_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_019247891.1|2976319_2977228_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_010931150.1|2977224_2978091_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_003814524.1|2978077_2978905_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_003820806.1|2978915_2980043_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.3	1.2e-23
WP_023852748.1|2981120_2982359_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931152.1|2982400_2983663_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_010931153.1|2983669_2984422_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_019248355.1|2984473_2984659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003820813.1|2984934_2985399_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA	NA
WP_003820814.1|2985430_2986090_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_010931154.1|2986234_2988343_+	AsmA family protein	NA	NA	NA	NA	NA
WP_023852714.1|2988339_2989290_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931155.1|2989393_2990014_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931156.1|2990105_2990858_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_019248356.1|2991992_2993117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_019247402.1|2993162_2993531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2993772_2994723_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247492.1|2995758_2996301_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023998107.1|2996498_2996669_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005012067.1|2996686_2997637_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997028.1|2997633_2998599_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815281.1|2998668_2999505_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	33.3	1.6e-33
WP_010931158.1|3000017_3001127_+	porin	NA	NA	NA	NA	NA
WP_005012067.1|3001188_3002139_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 30
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	3382084	3435825	4106384	transposase	Staphylococcus_phage(33.33%)	48	NA	NA
WP_023995489.1|3382084_3383035_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931336.1|3383439_3384084_-	urease accessory protein UreG	NA	NA	NA	NA	NA
WP_019247677.1|3384108_3384693_-	urease accessory protein UreF	NA	NA	NA	NA	NA
WP_014905506.1|3384793_3385411_-	urease accessory protein UreE	NA	NA	NA	NA	NA
WP_010931337.1|3385413_3387129_-	urease subunit alpha	NA	NA	NA	NA	NA
WP_010931338.1|3387125_3387434_-	urease subunit beta	NA	NA	NA	NA	NA
WP_003814828.1|3387450_3388068_-	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_010931340.1|3388112_3388415_-	urease subunit gamma	NA	NA	NA	NA	NA
WP_003814832.1|3388515_3389370_-	urease accessory protein UreD	NA	NA	NA	NA	NA
WP_124740609.1|3389557_3389782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010929281.1|3389951_3390224_+	MerR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_010929282.1|3390641_3391049_-	GFA family protein	NA	NA	NA	NA	NA
WP_010931341.1|3391418_3392213_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010927102.1|3392313_3393549_+	methylaspartate ammonia-lyase	NA	NA	NA	NA	NA
WP_003814852.1|3393617_3394634_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931342.1|3394645_3396022_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_003814856.1|3396018_3397215_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814858.1|3397211_3398750_-	SpoVR family protein	NA	NA	NA	NA	NA
WP_010931343.1|3398746_3400006_-	YeaH/YhbH family protein	NA	NA	NA	NA	NA
WP_005012067.1|3401946_3402897_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931344.1|3403663_3404758_-	CoA transferase	NA	NA	NA	NA	NA
WP_019247312.1|3404750_3406085_-	AMP-binding protein	NA	NA	NA	NA	NA
WP_003808193.1|3406038_3406722_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024000003.1|3406747_3407911_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_004566224.1|3407907_3408909_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931346.1|3408908_3409781_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010931347.1|3409777_3410527_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.8	1.9e-09
WP_010931348.1|3410523_3411315_-	ATP-binding cassette domain-containing protein	NA	A0A1M7XV31	Cedratvirus	29.4	1.7e-08
WP_010931349.1|3411311_3412451_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047122778.1|3412726_3413512_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_014486103.1|3413545_3414328_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA	NA
WP_010931351.1|3414331_3414721_+	OB-fold domain-containing protein	NA	NA	NA	NA	NA
WP_010931352.1|3415860_3416724_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_010931353.1|3416759_3417848_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_010931070.1|3417844_3418795_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247959.1|3419148_3422127_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003818344.1|3423053_3423932_+	fatty acid desaturase	NA	NA	NA	NA	NA
WP_005013747.1|3425880_3426831_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931354.1|3426827_3427295_-	ribonuclease HI	NA	J9Q745	Salmonella_phage	50.7	5.6e-36
WP_010931355.1|3427337_3428108_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010927090.1|3428128_3428929_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_010931356.1|3428939_3430349_+	transglycosylase SLT domain-containing protein	NA	NA	NA	NA	NA
WP_003814739.1|3430443_3431229_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_010931561.1|3431468_3432485_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814742.1|3432592_3432985_-	OsmC family protein	NA	NA	NA	NA	NA
WP_010931357.1|3433122_3433803_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_023994844.1|3433807_3434779_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010930179.1|3434874_3435825_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 31
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	3441980	3501278	4106384	tRNA,transposase	Acinetobacter_phage(27.27%)	48	NA	NA
WP_003820957.1|3441980_3443744_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	50.0	5.0e-162
WP_010931362.1|3443855_3444734_+	septum site-determining protein MinC	NA	NA	NA	NA	NA
WP_003814250.1|3444846_3445662_+	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_003814252.1|3445665_3445917_+	cell division topological specificity factor MinE	NA	NA	NA	NA	NA
WP_010929632.1|3446001_3447018_-|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_003814254.1|3447348_3447570_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA	NA
WP_019247693.1|3449930_3450848_-	DMT family transporter	NA	NA	NA	NA	NA
WP_019247692.1|3451345_3452554_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931365.1|3452633_3454205_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003814275.1|3454322_3455258_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_003814277.1|3455446_3456391_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	8.4e-07
WP_003814283.1|3456958_3462676_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	39.5	1.0e-195
WP_010931367.1|3462681_3463809_+	aminodeoxychorismate synthase component I	NA	S4VT78	Pandoravirus	37.8	3.8e-38
WP_003814287.1|3463864_3464491_+	aminotransferase class IV	NA	NA	NA	NA	NA
WP_010931363.1|3464762_3465779_+|transposase	IS110-like element IS1663 family transposase	transposase	NA	NA	NA	NA
WP_010927020.1|3465874_3466585_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_010931368.1|3466581_3467571_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_010931369.1|3467666_3469298_+	AMP-binding protein	NA	NA	NA	NA	NA
WP_010931370.1|3469300_3470038_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_019247745.1|3470193_3471066_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_003814298.1|3471334_3472555_+	MFS transporter	NA	NA	NA	NA	NA
WP_003814300.1|3472551_3473211_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA	NA
WP_003814302.1|3473282_3473915_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_010931372.1|3473944_3474463_+	flavin reductase family protein	NA	NA	NA	NA	NA
WP_010931373.1|3474473_3475583_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_003814312.1|3475629_3476484_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_010931374.1|3476485_3477388_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_005012067.1|3478610_3479561_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_023997720.1|3481315_3482305_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_019247413.1|3482301_3482460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010931375.1|3482480_3483269_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	53.0	5.1e-66
WP_003817833.1|3483265_3484297_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	42.7	7.4e-73
WP_003815390.1|3484315_3484879_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	62.1	1.1e-65
WP_010931376.1|3484934_3486455_-	anthranilate synthase component I	NA	S4VT78	Pandoravirus	32.1	9.0e-43
WP_010931377.1|3486718_3487423_-	phosphoglycolate phosphatase	NA	NA	NA	NA	NA
WP_003815384.1|3487430_3488168_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_003815381.1|3488273_3488648_+	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA	NA
WP_003815379.1|3488690_3489980_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_010931378.1|3489976_3491146_+	UbiH/UbiF family hydroxylase	NA	NA	NA	NA	NA
WP_010931379.1|3491142_3491982_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA	NA
WP_010931380.1|3492041_3492977_+	D-2-hydroxyacid dehydrogenase family protein	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	27.7	6.4e-15
WP_005012067.1|3492989_3493940_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931381.1|3494038_3495001_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	64.5	4.6e-93
WP_003817821.1|3495032_3495392_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_010931382.1|3495516_3496419_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	24.0	1.9e-08
WP_010931383.1|3496420_3498193_-	M61 family metallopeptidase	NA	NA	NA	NA	NA
WP_003815367.1|3498227_3499004_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_023852617.1|3500327_3501278_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
>prophage 32
NZ_CP011196	Bordetella pertussis strain H810 chromosome, complete genome	4106384	3516216	3574289	4106384	tRNA,transposase	Planktothrix_phage(12.5%)	47	NA	NA
WP_005012808.1|3516216_3517167_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010931392.1|3517295_3518429_-	M20 family metallopeptidase	NA	NA	NA	NA	NA
WP_010931393.1|3518472_3519378_-	hydrolase	NA	NA	NA	NA	NA
WP_023852622.1|3519380_3521081_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	1.0e-15
WP_010931394.1|3521077_3521998_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003817805.1|3522005_3522983_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_010931395.1|3523041_3524076_-	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA	NA
WP_003815317.1|3526050_3526287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023995266.1|3526413_3527277_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_003815315.1|3527365_3528187_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_003815313.1|3528266_3529004_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931397.1|3529000_3529993_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_003817794.1|3530106_3530769_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010931399.1|3530813_3531962_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_010931400.1|3534285_3535236_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_014486105.1|3535576_3536527_+|transposase	IS481 family transposase	transposase	NA	NA	NA	NA
WP_005013747.1|3536625_3537576_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_029443756.1|3537872_3538370_+	cupredoxin family protein	NA	NA	NA	NA	NA
WP_010931403.1|3538412_3540188_+	copper resistance system multicopper oxidase	NA	NA	NA	NA	NA
WP_010931404.1|3540195_3541062_+	copper resistance protein B	NA	NA	NA	NA	NA
WP_019249391.1|3541068_3541803_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_010931406.1|3542972_3543767_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003815296.1|3544056_3544647_+	cysteine dioxygenase	NA	NA	NA	NA	NA
WP_010931407.1|3544680_3546009_-	amidase	NA	NA	NA	NA	NA
WP_010931408.1|3546083_3547229_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_014905478.1|3547340_3548339_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_033446233.1|3548301_3548736_+	carbon monoxide dehydrogenase	NA	NA	NA	NA	NA
WP_010929974.1|3550252_3551137_+	DMT family transporter	NA	NA	NA	NA	NA
WP_010929973.1|3551133_3552339_-	cardiolipin synthase ClsB	NA	NA	NA	NA	NA
WP_010929972.1|3552335_3553196_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA	NA
WP_003807038.1|3553308_3555099_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	25.5	6.5e-08
WP_003807035.1|3555139_3555805_-	DUF502 domain-containing protein	NA	A0A2I7S9X1	Vibrio_phage	28.4	6.7e-11
WP_010929971.1|3555805_3556114_-	FmdB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010929970.1|3556279_3557566_-	putative Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_010929969.1|3558999_3559950_-|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
WP_010929968.1|3561901_3563116_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003815171.1|3563221_3564211_+	KpsF/GutQ family sugar-phosphate isomerase	NA	A0A2P0VNK5	Tetraselmis_virus	37.7	4.3e-38
WP_003815172.1|3564207_3564816_+	HAD-IIIA family hydrolase	NA	E3T535	Cafeteria_roenbergensis_virus	26.1	5.2e-10
WP_010929967.1|3564828_3565458_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_003815175.1|3565454_3566075_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA	NA
WP_003815177.1|3566106_3566898_+	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.4	9.5e-20
WP_010929966.1|3567749_3568205_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_010929965.1|3568223_3569150_+	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_010929964.1|3569203_3570490_-	cytochrome c	NA	NA	NA	NA	NA
WP_003815183.1|3571420_3572293_+	RNase adapter RapZ	NA	A0A1P8D5W0	Corynebacterium_phage	34.5	2.4e-08
WP_010929963.1|3572289_3573240_+	septal ring lytic transglycosylase RlpA family protein	NA	F5B3X9	Synechococcus_phage	47.2	6.9e-17
WP_005012067.1|3573338_3574289_+|transposase	IS481-like element IS481 family transposase	transposase	NA	NA	NA	NA
